Multiple sequence alignment - TraesCS4A01G419400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G419400 chr4A 100.000 4142 0 0 1 4142 689846478 689850619 0.000000e+00 7649.0
1 TraesCS4A01G419400 chr4A 82.051 117 17 4 3746 3859 690133940 690134055 3.410000e-16 97.1
2 TraesCS4A01G419400 chr4A 92.308 65 4 1 3748 3812 689675243 689675180 1.590000e-14 91.6
3 TraesCS4A01G419400 chr7D 92.407 3872 145 58 1 3814 35184942 35181162 0.000000e+00 5384.0
4 TraesCS4A01G419400 chr7D 91.379 58 4 1 3746 3803 35248765 35248821 1.230000e-10 78.7
5 TraesCS4A01G419400 chr7A 95.532 2708 92 18 500 3191 35398237 35395543 0.000000e+00 4303.0
6 TraesCS4A01G419400 chr7A 84.370 691 42 28 3188 3860 35395507 35394865 5.880000e-173 617.0
7 TraesCS4A01G419400 chr7A 100.000 77 0 0 323 399 35398359 35398283 4.320000e-30 143.0
8 TraesCS4A01G419400 chr7A 83.125 160 5 6 1 159 35398638 35398500 4.350000e-25 126.0
9 TraesCS4A01G419400 chr7A 84.746 118 12 5 3746 3859 35489357 35489472 3.380000e-21 113.0
10 TraesCS4A01G419400 chr5D 97.886 804 17 0 2039 2842 338408935 338409738 0.000000e+00 1391.0
11 TraesCS4A01G419400 chr5D 97.761 804 18 0 2039 2842 476457089 476456286 0.000000e+00 1386.0
12 TraesCS4A01G419400 chr5D 91.176 102 6 1 1084 1185 476457772 476457674 7.220000e-28 135.0
13 TraesCS4A01G419400 chr5D 90.196 102 7 1 1084 1185 338408253 338408351 3.360000e-26 130.0
14 TraesCS4A01G419400 chr5B 96.823 661 21 0 2039 2699 269952234 269951574 0.000000e+00 1105.0
15 TraesCS4A01G419400 chr5B 91.389 511 37 5 2688 3191 269948154 269947644 0.000000e+00 693.0
16 TraesCS4A01G419400 chr5B 89.905 317 24 6 3188 3503 269947297 269946988 6.450000e-108 401.0
17 TraesCS4A01G419400 chr5B 95.833 72 2 1 1115 1185 269952880 269952809 9.410000e-22 115.0
18 TraesCS4A01G419400 chr6B 92.481 133 4 5 384 512 45065648 45065518 7.070000e-43 185.0
19 TraesCS4A01G419400 chr4B 93.162 117 5 3 381 496 605377195 605377309 7.120000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G419400 chr4A 689846478 689850619 4141 False 7649.00 7649 100.00000 1 4142 1 chr4A.!!$F1 4141
1 TraesCS4A01G419400 chr7D 35181162 35184942 3780 True 5384.00 5384 92.40700 1 3814 1 chr7D.!!$R1 3813
2 TraesCS4A01G419400 chr7A 35394865 35398638 3773 True 1297.25 4303 90.75675 1 3860 4 chr7A.!!$R1 3859
3 TraesCS4A01G419400 chr5D 338408253 338409738 1485 False 760.50 1391 94.04100 1084 2842 2 chr5D.!!$F1 1758
4 TraesCS4A01G419400 chr5D 476456286 476457772 1486 True 760.50 1386 94.46850 1084 2842 2 chr5D.!!$R1 1758
5 TraesCS4A01G419400 chr5B 269946988 269952880 5892 True 578.50 1105 93.48750 1115 3503 4 chr5B.!!$R1 2388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 492 0.036577 CCCAGCAGATCGATCCATCC 60.037 60.0 21.66 7.80 0.00 3.51 F
835 888 0.110147 CGTCGATCGATCTACAGCCC 60.110 60.0 22.50 3.74 42.86 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1663 3.809171 CCGAACTCGACGATGTCCTCG 62.809 61.905 0.00 6.33 43.98 4.63 R
3249 7314 0.593773 CAAAACAAACTCCGGCGGTG 60.594 55.000 27.32 26.06 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 2.516888 CCCTGTCCACGACCCAACT 61.517 63.158 0.00 0.00 0.00 3.16
179 200 3.782244 GCTCGTTCACTGCTGGCG 61.782 66.667 0.00 0.00 0.00 5.69
180 201 3.114616 CTCGTTCACTGCTGGCGG 61.115 66.667 0.00 0.00 0.00 6.13
181 202 3.573772 CTCGTTCACTGCTGGCGGA 62.574 63.158 8.50 0.00 0.00 5.54
203 230 3.050275 AAGGCTCAACGGAAGCGC 61.050 61.111 0.00 0.00 0.00 5.92
256 283 1.888172 CGTACGCCACCAACACCAA 60.888 57.895 0.52 0.00 0.00 3.67
257 284 1.650363 GTACGCCACCAACACCAAC 59.350 57.895 0.00 0.00 0.00 3.77
258 285 1.096386 GTACGCCACCAACACCAACA 61.096 55.000 0.00 0.00 0.00 3.33
259 286 0.816018 TACGCCACCAACACCAACAG 60.816 55.000 0.00 0.00 0.00 3.16
260 287 1.821759 CGCCACCAACACCAACAGA 60.822 57.895 0.00 0.00 0.00 3.41
263 290 1.032014 CCACCAACACCAACAGAAGG 58.968 55.000 0.00 0.00 0.00 3.46
264 291 1.409521 CCACCAACACCAACAGAAGGA 60.410 52.381 0.00 0.00 0.00 3.36
274 301 1.211457 CAACAGAAGGAGGAGGATGGG 59.789 57.143 0.00 0.00 0.00 4.00
399 450 1.745264 CTCGCTCCTTCTCCCATCC 59.255 63.158 0.00 0.00 0.00 3.51
400 451 1.753368 CTCGCTCCTTCTCCCATCCC 61.753 65.000 0.00 0.00 0.00 3.85
401 452 2.825264 GCTCCTTCTCCCATCCCG 59.175 66.667 0.00 0.00 0.00 5.14
402 453 2.825264 CTCCTTCTCCCATCCCGC 59.175 66.667 0.00 0.00 0.00 6.13
403 454 2.768344 TCCTTCTCCCATCCCGCC 60.768 66.667 0.00 0.00 0.00 6.13
404 455 2.770048 CCTTCTCCCATCCCGCCT 60.770 66.667 0.00 0.00 0.00 5.52
405 456 2.812619 CCTTCTCCCATCCCGCCTC 61.813 68.421 0.00 0.00 0.00 4.70
406 457 3.154473 TTCTCCCATCCCGCCTCG 61.154 66.667 0.00 0.00 0.00 4.63
423 474 3.567797 GCCTCAGCGCGTCAATCC 61.568 66.667 8.43 0.00 0.00 3.01
425 476 2.125552 CTCAGCGCGTCAATCCCA 60.126 61.111 8.43 0.00 0.00 4.37
426 477 2.125552 TCAGCGCGTCAATCCCAG 60.126 61.111 8.43 0.00 0.00 4.45
428 479 4.393155 AGCGCGTCAATCCCAGCA 62.393 61.111 8.43 0.00 0.00 4.41
430 481 2.125552 CGCGTCAATCCCAGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
431 482 1.522355 CGCGTCAATCCCAGCAGAT 60.522 57.895 0.00 0.00 0.00 2.90
433 484 1.493950 GCGTCAATCCCAGCAGATCG 61.494 60.000 0.00 0.00 0.00 3.69
435 486 1.269988 CGTCAATCCCAGCAGATCGAT 60.270 52.381 0.00 0.00 0.00 3.59
437 488 1.345741 TCAATCCCAGCAGATCGATCC 59.654 52.381 21.66 7.65 0.00 3.36
441 492 0.036577 CCCAGCAGATCGATCCATCC 60.037 60.000 21.66 7.80 0.00 3.51
450 501 2.332332 TCGATCCATCCATCCATCCT 57.668 50.000 0.00 0.00 0.00 3.24
520 571 3.461773 CCCGCGGTCTCTCCACAT 61.462 66.667 26.12 0.00 35.57 3.21
733 785 4.640771 ACTTCCTCTTTTGGCATCAGTA 57.359 40.909 0.00 0.00 0.00 2.74
737 789 4.526970 TCCTCTTTTGGCATCAGTAATCC 58.473 43.478 0.00 0.00 0.00 3.01
834 887 0.866427 TCGTCGATCGATCTACAGCC 59.134 55.000 22.50 4.51 44.01 4.85
835 888 0.110147 CGTCGATCGATCTACAGCCC 60.110 60.000 22.50 3.74 42.86 5.19
864 917 5.063438 TCGCCTCATACAATTCTTTTCTTCG 59.937 40.000 0.00 0.00 0.00 3.79
865 918 5.063438 CGCCTCATACAATTCTTTTCTTCGA 59.937 40.000 0.00 0.00 0.00 3.71
866 919 6.238211 CGCCTCATACAATTCTTTTCTTCGAT 60.238 38.462 0.00 0.00 0.00 3.59
867 920 7.475840 GCCTCATACAATTCTTTTCTTCGATT 58.524 34.615 0.00 0.00 0.00 3.34
917 970 5.233902 CGAATAGCAGAGAAATTCCTGACTG 59.766 44.000 13.21 8.45 32.37 3.51
920 973 3.015327 GCAGAGAAATTCCTGACTGCAT 58.985 45.455 18.95 0.00 46.30 3.96
921 974 4.194640 GCAGAGAAATTCCTGACTGCATA 58.805 43.478 18.95 0.00 46.30 3.14
922 975 4.034975 GCAGAGAAATTCCTGACTGCATAC 59.965 45.833 18.95 0.00 46.30 2.39
923 976 4.269603 CAGAGAAATTCCTGACTGCATACG 59.730 45.833 5.83 0.00 32.37 3.06
1188 1249 2.150837 GTCGGCGCTCTACAACGTC 61.151 63.158 7.64 0.00 0.00 4.34
3166 6878 5.358442 GGGCGAGCTCTTTCTATATCTATCA 59.642 44.000 12.85 0.00 0.00 2.15
3173 6885 6.675971 GCTCTTTCTATATCTATCACCGGTCG 60.676 46.154 2.59 0.00 0.00 4.79
3249 7314 1.384742 GTCTCGTCGCCGTTTAGTTTC 59.615 52.381 0.00 0.00 35.01 2.78
3250 7315 1.001487 TCTCGTCGCCGTTTAGTTTCA 60.001 47.619 0.00 0.00 35.01 2.69
3251 7316 1.123756 CTCGTCGCCGTTTAGTTTCAC 59.876 52.381 0.00 0.00 35.01 3.18
3315 7381 3.621268 CGTCAGTCCACTGTTTCTTTCAA 59.379 43.478 6.61 0.00 44.12 2.69
3317 7383 4.636206 GTCAGTCCACTGTTTCTTTCAACT 59.364 41.667 6.61 0.00 44.12 3.16
3381 7447 9.341899 GTACTATGTTTCTTTCGATTGCAATTT 57.658 29.630 14.33 0.00 0.00 1.82
3448 7514 1.222936 GGCTGTGAGTGGAGATGGG 59.777 63.158 0.00 0.00 0.00 4.00
3450 7516 1.222936 CTGTGAGTGGAGATGGGGC 59.777 63.158 0.00 0.00 0.00 5.80
3503 7573 5.011738 TCCCTGTCGACTGTAATTTTCTCTT 59.988 40.000 17.92 0.00 0.00 2.85
3504 7574 5.348997 CCCTGTCGACTGTAATTTTCTCTTC 59.651 44.000 17.92 0.00 0.00 2.87
3505 7575 6.159988 CCTGTCGACTGTAATTTTCTCTTCT 58.840 40.000 17.92 0.00 0.00 2.85
3506 7576 6.309251 CCTGTCGACTGTAATTTTCTCTTCTC 59.691 42.308 17.92 0.00 0.00 2.87
3507 7577 6.982852 TGTCGACTGTAATTTTCTCTTCTCT 58.017 36.000 17.92 0.00 0.00 3.10
3510 7580 8.452534 GTCGACTGTAATTTTCTCTTCTCTCTA 58.547 37.037 8.70 0.00 0.00 2.43
3530 7601 5.333581 TCTAGAGTTCAGACCAGGAAATGA 58.666 41.667 0.00 0.00 0.00 2.57
3540 7614 4.594920 AGACCAGGAAATGAACAGAGAAGA 59.405 41.667 0.00 0.00 0.00 2.87
3581 7659 2.738846 TGCTTTCTGTGCGATTCTCTTC 59.261 45.455 0.00 0.00 0.00 2.87
3590 7668 5.932661 TGTGCGATTCTCTTCTATCTATCG 58.067 41.667 0.00 0.00 38.24 2.92
3592 7670 6.019152 GTGCGATTCTCTTCTATCTATCGAC 58.981 44.000 0.00 0.00 37.62 4.20
3593 7671 5.163943 TGCGATTCTCTTCTATCTATCGACG 60.164 44.000 0.00 0.00 37.62 5.12
3635 7721 0.458543 CTCTGGGTCGATCAACCACG 60.459 60.000 4.94 0.00 41.40 4.94
3689 7775 2.332514 CACCCTGCACGCACTTTG 59.667 61.111 0.00 0.00 0.00 2.77
3729 7818 1.597700 GCGATATTCTGCGTCGTCCG 61.598 60.000 0.00 0.00 37.66 4.79
3791 7887 2.687805 GCCGAGGTTTTTCGAGGCC 61.688 63.158 0.00 0.00 43.03 5.19
3815 7916 3.782523 TCTAGATTGGATTCCTGCTTGGT 59.217 43.478 3.95 0.00 37.07 3.67
3816 7917 2.731572 AGATTGGATTCCTGCTTGGTG 58.268 47.619 3.95 0.00 37.07 4.17
3817 7918 2.309755 AGATTGGATTCCTGCTTGGTGA 59.690 45.455 3.95 0.00 37.07 4.02
3818 7919 2.673775 TTGGATTCCTGCTTGGTGAA 57.326 45.000 3.95 0.00 37.07 3.18
3819 7920 2.205022 TGGATTCCTGCTTGGTGAAG 57.795 50.000 3.95 0.00 37.07 3.02
3820 7921 1.704628 TGGATTCCTGCTTGGTGAAGA 59.295 47.619 3.95 0.00 37.07 2.87
3821 7922 2.108075 TGGATTCCTGCTTGGTGAAGAA 59.892 45.455 3.95 0.00 37.07 2.52
3822 7923 2.751806 GGATTCCTGCTTGGTGAAGAAG 59.248 50.000 0.00 0.00 34.80 2.85
3823 7924 3.560025 GGATTCCTGCTTGGTGAAGAAGA 60.560 47.826 0.00 0.00 37.03 2.87
3824 7925 3.576078 TTCCTGCTTGGTGAAGAAGAA 57.424 42.857 0.00 0.00 37.03 2.52
3832 7939 4.690280 GCTTGGTGAAGAAGAAGAGAAGAG 59.310 45.833 0.00 0.00 0.00 2.85
3848 7955 0.322008 AGAGGAGGCGGCAAAGAAAG 60.322 55.000 13.08 0.00 0.00 2.62
3849 7956 0.321653 GAGGAGGCGGCAAAGAAAGA 60.322 55.000 13.08 0.00 0.00 2.52
3851 7958 0.958822 GGAGGCGGCAAAGAAAGAAA 59.041 50.000 13.08 0.00 0.00 2.52
3852 7959 1.335964 GGAGGCGGCAAAGAAAGAAAC 60.336 52.381 13.08 0.00 0.00 2.78
3853 7960 0.310854 AGGCGGCAAAGAAAGAAACG 59.689 50.000 13.08 0.00 0.00 3.60
3854 7961 0.663269 GGCGGCAAAGAAAGAAACGG 60.663 55.000 3.07 0.00 0.00 4.44
3855 7962 1.275471 GCGGCAAAGAAAGAAACGGC 61.275 55.000 0.00 0.00 0.00 5.68
3856 7963 0.663269 CGGCAAAGAAAGAAACGGCC 60.663 55.000 0.00 0.00 36.62 6.13
3857 7964 0.387565 GGCAAAGAAAGAAACGGCCA 59.612 50.000 2.24 0.00 39.66 5.36
3860 7967 2.545742 GCAAAGAAAGAAACGGCCACAT 60.546 45.455 2.24 0.00 0.00 3.21
3861 7968 3.052036 CAAAGAAAGAAACGGCCACATG 58.948 45.455 2.24 0.00 0.00 3.21
3862 7969 2.270352 AGAAAGAAACGGCCACATGA 57.730 45.000 2.24 0.00 0.00 3.07
3863 7970 2.795329 AGAAAGAAACGGCCACATGAT 58.205 42.857 2.24 0.00 0.00 2.45
3864 7971 2.489329 AGAAAGAAACGGCCACATGATG 59.511 45.455 2.24 0.00 0.00 3.07
3865 7972 0.527565 AAGAAACGGCCACATGATGC 59.472 50.000 2.24 0.50 0.00 3.91
3866 7973 1.226379 GAAACGGCCACATGATGCG 60.226 57.895 2.24 1.09 0.00 4.73
3867 7974 3.340953 AAACGGCCACATGATGCGC 62.341 57.895 2.24 0.00 0.00 6.09
3868 7975 4.783621 ACGGCCACATGATGCGCT 62.784 61.111 9.73 0.00 0.00 5.92
3869 7976 3.945434 CGGCCACATGATGCGCTC 61.945 66.667 9.73 4.27 0.00 5.03
3870 7977 3.589881 GGCCACATGATGCGCTCC 61.590 66.667 9.73 0.00 0.00 4.70
3871 7978 3.945434 GCCACATGATGCGCTCCG 61.945 66.667 9.73 0.72 0.00 4.63
3885 7992 4.988744 TCCGCGAGAGGAGAAGAT 57.011 55.556 8.23 0.00 34.92 2.40
3886 7993 2.409399 TCCGCGAGAGGAGAAGATG 58.591 57.895 8.23 0.00 34.92 2.90
3887 7994 1.299773 CCGCGAGAGGAGAAGATGC 60.300 63.158 8.23 0.00 0.00 3.91
3888 7995 1.732917 CGCGAGAGGAGAAGATGCT 59.267 57.895 0.00 0.00 0.00 3.79
3889 7996 0.102120 CGCGAGAGGAGAAGATGCTT 59.898 55.000 0.00 0.00 0.00 3.91
3890 7997 1.851658 GCGAGAGGAGAAGATGCTTC 58.148 55.000 0.00 0.00 0.00 3.86
3891 7998 1.863624 GCGAGAGGAGAAGATGCTTCG 60.864 57.143 0.00 0.00 35.02 3.79
3892 7999 1.268999 CGAGAGGAGAAGATGCTTCGG 60.269 57.143 0.00 0.00 31.37 4.30
3893 8000 1.754226 GAGAGGAGAAGATGCTTCGGT 59.246 52.381 0.00 0.00 0.00 4.69
3894 8001 2.952978 GAGAGGAGAAGATGCTTCGGTA 59.047 50.000 0.00 0.00 0.00 4.02
3895 8002 2.691011 AGAGGAGAAGATGCTTCGGTAC 59.309 50.000 0.00 0.00 0.00 3.34
3896 8003 2.427453 GAGGAGAAGATGCTTCGGTACA 59.573 50.000 0.00 0.00 0.00 2.90
3897 8004 2.428890 AGGAGAAGATGCTTCGGTACAG 59.571 50.000 0.00 0.00 0.00 2.74
3898 8005 2.197577 GAGAAGATGCTTCGGTACAGC 58.802 52.381 0.00 0.00 37.82 4.40
3899 8006 0.924090 GAAGATGCTTCGGTACAGCG 59.076 55.000 0.00 0.00 40.45 5.18
3900 8007 0.530744 AAGATGCTTCGGTACAGCGA 59.469 50.000 0.00 0.00 40.45 4.93
3901 8008 0.179134 AGATGCTTCGGTACAGCGAC 60.179 55.000 2.55 0.00 40.45 5.19
3902 8009 0.179134 GATGCTTCGGTACAGCGACT 60.179 55.000 2.55 0.00 40.45 4.18
3903 8010 0.179134 ATGCTTCGGTACAGCGACTC 60.179 55.000 2.55 0.00 40.45 3.36
3904 8011 1.516603 GCTTCGGTACAGCGACTCC 60.517 63.158 2.55 0.00 0.00 3.85
3905 8012 1.226323 CTTCGGTACAGCGACTCCG 60.226 63.158 2.55 7.01 43.65 4.63
3906 8013 1.919956 CTTCGGTACAGCGACTCCGT 61.920 60.000 2.55 0.00 42.95 4.69
3907 8014 1.518056 TTCGGTACAGCGACTCCGTT 61.518 55.000 2.55 0.00 42.95 4.44
3908 8015 1.513586 CGGTACAGCGACTCCGTTC 60.514 63.158 0.00 0.00 38.45 3.95
3909 8016 1.153881 GGTACAGCGACTCCGTTCC 60.154 63.158 0.00 0.00 38.24 3.62
3910 8017 1.593296 GGTACAGCGACTCCGTTCCT 61.593 60.000 0.00 0.00 38.24 3.36
3911 8018 0.243095 GTACAGCGACTCCGTTCCTT 59.757 55.000 0.00 0.00 38.24 3.36
3912 8019 0.524862 TACAGCGACTCCGTTCCTTC 59.475 55.000 0.00 0.00 38.24 3.46
3913 8020 1.446272 CAGCGACTCCGTTCCTTCC 60.446 63.158 0.00 0.00 38.24 3.46
3914 8021 1.906824 AGCGACTCCGTTCCTTCCA 60.907 57.895 0.00 0.00 38.24 3.53
3915 8022 1.446272 GCGACTCCGTTCCTTCCAG 60.446 63.158 0.00 0.00 38.24 3.86
3916 8023 1.965219 CGACTCCGTTCCTTCCAGT 59.035 57.895 0.00 0.00 0.00 4.00
3917 8024 0.388649 CGACTCCGTTCCTTCCAGTG 60.389 60.000 0.00 0.00 0.00 3.66
3918 8025 0.966920 GACTCCGTTCCTTCCAGTGA 59.033 55.000 0.00 0.00 0.00 3.41
3919 8026 1.343465 GACTCCGTTCCTTCCAGTGAA 59.657 52.381 0.00 0.00 0.00 3.18
3920 8027 1.344763 ACTCCGTTCCTTCCAGTGAAG 59.655 52.381 0.00 0.00 46.29 3.02
3934 8041 0.163788 GTGAAGGCACATGTCGTTCG 59.836 55.000 17.69 2.27 44.51 3.95
3935 8042 0.249699 TGAAGGCACATGTCGTTCGT 60.250 50.000 17.69 1.42 32.71 3.85
3936 8043 0.438830 GAAGGCACATGTCGTTCGTC 59.561 55.000 0.00 0.00 0.00 4.20
3937 8044 0.249699 AAGGCACATGTCGTTCGTCA 60.250 50.000 0.00 0.00 0.00 4.35
3938 8045 0.249699 AGGCACATGTCGTTCGTCAA 60.250 50.000 0.00 0.00 0.00 3.18
3939 8046 0.584396 GGCACATGTCGTTCGTCAAA 59.416 50.000 0.00 0.00 0.00 2.69
3940 8047 1.658968 GCACATGTCGTTCGTCAAAC 58.341 50.000 0.00 0.00 34.31 2.93
3949 8056 0.507358 GTTCGTCAAACGCTCTGACC 59.493 55.000 6.56 0.00 42.21 4.02
3950 8057 0.599204 TTCGTCAAACGCTCTGACCC 60.599 55.000 6.56 0.00 42.21 4.46
3951 8058 1.006102 CGTCAAACGCTCTGACCCT 60.006 57.895 6.56 0.00 40.11 4.34
3952 8059 0.600255 CGTCAAACGCTCTGACCCTT 60.600 55.000 6.56 0.00 40.11 3.95
3953 8060 1.336517 CGTCAAACGCTCTGACCCTTA 60.337 52.381 6.56 0.00 40.11 2.69
3954 8061 2.067013 GTCAAACGCTCTGACCCTTAC 58.933 52.381 1.66 0.00 37.77 2.34
3955 8062 1.068474 CAAACGCTCTGACCCTTACG 58.932 55.000 0.00 0.00 0.00 3.18
3956 8063 0.963962 AAACGCTCTGACCCTTACGA 59.036 50.000 0.00 0.00 0.00 3.43
3957 8064 1.183549 AACGCTCTGACCCTTACGAT 58.816 50.000 0.00 0.00 0.00 3.73
3958 8065 1.183549 ACGCTCTGACCCTTACGATT 58.816 50.000 0.00 0.00 0.00 3.34
3959 8066 1.549170 ACGCTCTGACCCTTACGATTT 59.451 47.619 0.00 0.00 0.00 2.17
3960 8067 2.028385 ACGCTCTGACCCTTACGATTTT 60.028 45.455 0.00 0.00 0.00 1.82
3961 8068 2.603560 CGCTCTGACCCTTACGATTTTC 59.396 50.000 0.00 0.00 0.00 2.29
3962 8069 3.676324 CGCTCTGACCCTTACGATTTTCT 60.676 47.826 0.00 0.00 0.00 2.52
3963 8070 4.439700 CGCTCTGACCCTTACGATTTTCTA 60.440 45.833 0.00 0.00 0.00 2.10
3964 8071 5.044558 GCTCTGACCCTTACGATTTTCTAG 58.955 45.833 0.00 0.00 0.00 2.43
3965 8072 5.593010 CTCTGACCCTTACGATTTTCTAGG 58.407 45.833 0.00 0.00 0.00 3.02
3966 8073 5.021458 TCTGACCCTTACGATTTTCTAGGT 58.979 41.667 0.00 0.00 0.00 3.08
3967 8074 5.482878 TCTGACCCTTACGATTTTCTAGGTT 59.517 40.000 0.00 0.00 0.00 3.50
3968 8075 6.013984 TCTGACCCTTACGATTTTCTAGGTTT 60.014 38.462 0.00 0.00 0.00 3.27
3969 8076 5.935789 TGACCCTTACGATTTTCTAGGTTTG 59.064 40.000 0.00 0.00 0.00 2.93
3970 8077 5.872963 ACCCTTACGATTTTCTAGGTTTGT 58.127 37.500 0.00 0.00 0.00 2.83
3971 8078 6.301486 ACCCTTACGATTTTCTAGGTTTGTT 58.699 36.000 0.00 0.00 0.00 2.83
3972 8079 6.206048 ACCCTTACGATTTTCTAGGTTTGTTG 59.794 38.462 0.00 0.00 0.00 3.33
3973 8080 6.206048 CCCTTACGATTTTCTAGGTTTGTTGT 59.794 38.462 0.00 0.00 0.00 3.32
3974 8081 7.295930 CCTTACGATTTTCTAGGTTTGTTGTC 58.704 38.462 0.00 0.00 0.00 3.18
3975 8082 7.041644 CCTTACGATTTTCTAGGTTTGTTGTCA 60.042 37.037 0.00 0.00 0.00 3.58
3976 8083 6.687081 ACGATTTTCTAGGTTTGTTGTCAA 57.313 33.333 0.00 0.00 0.00 3.18
3977 8084 6.725246 ACGATTTTCTAGGTTTGTTGTCAAG 58.275 36.000 0.00 0.00 34.88 3.02
3978 8085 6.540914 ACGATTTTCTAGGTTTGTTGTCAAGA 59.459 34.615 0.00 0.00 34.88 3.02
3979 8086 6.851330 CGATTTTCTAGGTTTGTTGTCAAGAC 59.149 38.462 0.00 0.00 34.88 3.01
3980 8087 6.445357 TTTTCTAGGTTTGTTGTCAAGACC 57.555 37.500 0.00 5.08 36.23 3.85
3981 8088 3.724374 TCTAGGTTTGTTGTCAAGACCG 58.276 45.455 0.00 0.00 38.49 4.79
3982 8089 1.675552 AGGTTTGTTGTCAAGACCGG 58.324 50.000 0.00 0.00 38.49 5.28
3983 8090 0.030235 GGTTTGTTGTCAAGACCGGC 59.970 55.000 0.00 0.00 34.88 6.13
3984 8091 0.316689 GTTTGTTGTCAAGACCGGCG 60.317 55.000 0.00 0.00 34.88 6.46
3985 8092 0.462225 TTTGTTGTCAAGACCGGCGA 60.462 50.000 9.30 0.00 34.88 5.54
3986 8093 1.155424 TTGTTGTCAAGACCGGCGAC 61.155 55.000 9.30 3.95 0.00 5.19
3987 8094 2.029964 TTGTCAAGACCGGCGACC 59.970 61.111 9.30 0.00 0.00 4.79
3988 8095 2.504274 TTGTCAAGACCGGCGACCT 61.504 57.895 9.30 0.99 0.00 3.85
3989 8096 2.432628 GTCAAGACCGGCGACCTG 60.433 66.667 9.30 2.20 0.00 4.00
3990 8097 4.373116 TCAAGACCGGCGACCTGC 62.373 66.667 9.30 0.00 45.38 4.85
4005 8112 2.823593 TGCCGATGCATGAACCGG 60.824 61.111 17.70 17.70 44.23 5.28
4006 8113 2.513666 GCCGATGCATGAACCGGA 60.514 61.111 24.22 0.00 44.29 5.14
4007 8114 2.537560 GCCGATGCATGAACCGGAG 61.538 63.158 24.22 3.65 44.29 4.63
4008 8115 1.143838 CCGATGCATGAACCGGAGA 59.856 57.895 17.24 0.00 44.29 3.71
4009 8116 0.461870 CCGATGCATGAACCGGAGAA 60.462 55.000 17.24 0.00 44.29 2.87
4010 8117 1.368641 CGATGCATGAACCGGAGAAA 58.631 50.000 9.46 0.00 0.00 2.52
4011 8118 1.737236 CGATGCATGAACCGGAGAAAA 59.263 47.619 9.46 0.00 0.00 2.29
4012 8119 2.476185 CGATGCATGAACCGGAGAAAAC 60.476 50.000 9.46 0.00 0.00 2.43
4013 8120 2.270352 TGCATGAACCGGAGAAAACT 57.730 45.000 9.46 0.00 0.00 2.66
4014 8121 3.410631 TGCATGAACCGGAGAAAACTA 57.589 42.857 9.46 0.00 0.00 2.24
4015 8122 3.334691 TGCATGAACCGGAGAAAACTAG 58.665 45.455 9.46 0.00 0.00 2.57
4016 8123 2.096013 GCATGAACCGGAGAAAACTAGC 59.904 50.000 9.46 0.00 0.00 3.42
4017 8124 3.600388 CATGAACCGGAGAAAACTAGCT 58.400 45.455 9.46 0.00 0.00 3.32
4018 8125 3.314541 TGAACCGGAGAAAACTAGCTC 57.685 47.619 9.46 0.00 0.00 4.09
4019 8126 2.631062 TGAACCGGAGAAAACTAGCTCA 59.369 45.455 9.46 0.00 32.83 4.26
4020 8127 3.260884 TGAACCGGAGAAAACTAGCTCAT 59.739 43.478 9.46 0.00 32.83 2.90
4021 8128 3.252974 ACCGGAGAAAACTAGCTCATG 57.747 47.619 9.46 0.00 32.83 3.07
4022 8129 2.567615 ACCGGAGAAAACTAGCTCATGT 59.432 45.455 9.46 0.00 32.83 3.21
4023 8130 3.008049 ACCGGAGAAAACTAGCTCATGTT 59.992 43.478 9.46 0.00 32.83 2.71
4024 8131 3.372206 CCGGAGAAAACTAGCTCATGTTG 59.628 47.826 0.00 0.00 32.83 3.33
4025 8132 3.372206 CGGAGAAAACTAGCTCATGTTGG 59.628 47.826 0.00 0.00 32.83 3.77
4026 8133 4.579869 GGAGAAAACTAGCTCATGTTGGA 58.420 43.478 0.00 0.00 32.83 3.53
4027 8134 5.189180 GGAGAAAACTAGCTCATGTTGGAT 58.811 41.667 0.00 0.00 32.83 3.41
4028 8135 5.065731 GGAGAAAACTAGCTCATGTTGGATG 59.934 44.000 0.00 0.00 32.83 3.51
4029 8136 4.946157 AGAAAACTAGCTCATGTTGGATGG 59.054 41.667 0.00 0.00 0.00 3.51
4030 8137 2.338577 ACTAGCTCATGTTGGATGGC 57.661 50.000 0.00 0.00 0.00 4.40
4031 8138 1.561076 ACTAGCTCATGTTGGATGGCA 59.439 47.619 0.00 0.00 0.00 4.92
4032 8139 1.945394 CTAGCTCATGTTGGATGGCAC 59.055 52.381 0.00 0.00 0.00 5.01
4033 8140 0.682209 AGCTCATGTTGGATGGCACC 60.682 55.000 0.00 0.00 0.00 5.01
4034 8141 0.682209 GCTCATGTTGGATGGCACCT 60.682 55.000 0.00 0.00 0.00 4.00
4035 8142 1.100510 CTCATGTTGGATGGCACCTG 58.899 55.000 0.00 0.00 0.00 4.00
4036 8143 0.405198 TCATGTTGGATGGCACCTGT 59.595 50.000 0.00 0.00 0.00 4.00
4037 8144 0.813184 CATGTTGGATGGCACCTGTC 59.187 55.000 0.00 0.00 0.00 3.51
4038 8145 0.405198 ATGTTGGATGGCACCTGTCA 59.595 50.000 0.00 0.00 0.00 3.58
4039 8146 0.250858 TGTTGGATGGCACCTGTCAG 60.251 55.000 0.00 0.00 30.80 3.51
4040 8147 0.962356 GTTGGATGGCACCTGTCAGG 60.962 60.000 17.88 17.88 42.49 3.86
4041 8148 2.439156 GGATGGCACCTGTCAGGC 60.439 66.667 19.40 5.66 39.63 4.85
4042 8149 2.673523 GATGGCACCTGTCAGGCT 59.326 61.111 19.40 3.48 39.63 4.58
4043 8150 1.748122 GATGGCACCTGTCAGGCTG 60.748 63.158 19.40 16.13 39.63 4.85
4044 8151 3.278072 ATGGCACCTGTCAGGCTGG 62.278 63.158 19.40 9.88 39.63 4.85
4048 8155 3.252284 ACCTGTCAGGCTGGTGGG 61.252 66.667 19.40 15.44 45.97 4.61
4049 8156 3.252284 CCTGTCAGGCTGGTGGGT 61.252 66.667 15.73 0.00 0.00 4.51
4050 8157 2.033141 CTGTCAGGCTGGTGGGTG 59.967 66.667 15.73 0.00 0.00 4.61
4051 8158 2.447572 TGTCAGGCTGGTGGGTGA 60.448 61.111 15.73 0.00 0.00 4.02
4052 8159 2.348998 GTCAGGCTGGTGGGTGAG 59.651 66.667 15.73 0.00 0.00 3.51
4053 8160 2.930019 TCAGGCTGGTGGGTGAGG 60.930 66.667 15.73 0.00 0.00 3.86
4054 8161 2.930019 CAGGCTGGTGGGTGAGGA 60.930 66.667 6.61 0.00 0.00 3.71
4055 8162 2.125912 AGGCTGGTGGGTGAGGAT 59.874 61.111 0.00 0.00 0.00 3.24
4056 8163 1.542375 AGGCTGGTGGGTGAGGATT 60.542 57.895 0.00 0.00 0.00 3.01
4057 8164 1.379044 GGCTGGTGGGTGAGGATTG 60.379 63.158 0.00 0.00 0.00 2.67
4058 8165 1.380302 GCTGGTGGGTGAGGATTGT 59.620 57.895 0.00 0.00 0.00 2.71
4059 8166 0.618458 GCTGGTGGGTGAGGATTGTA 59.382 55.000 0.00 0.00 0.00 2.41
4060 8167 1.679032 GCTGGTGGGTGAGGATTGTAC 60.679 57.143 0.00 0.00 0.00 2.90
4061 8168 0.611200 TGGTGGGTGAGGATTGTACG 59.389 55.000 0.00 0.00 0.00 3.67
4062 8169 0.611714 GGTGGGTGAGGATTGTACGT 59.388 55.000 0.00 0.00 0.00 3.57
4063 8170 1.826720 GGTGGGTGAGGATTGTACGTA 59.173 52.381 0.00 0.00 0.00 3.57
4064 8171 2.417787 GGTGGGTGAGGATTGTACGTAC 60.418 54.545 18.90 18.90 0.00 3.67
4065 8172 1.473677 TGGGTGAGGATTGTACGTACG 59.526 52.381 20.18 15.01 0.00 3.67
4066 8173 1.474077 GGGTGAGGATTGTACGTACGT 59.526 52.381 25.98 25.98 0.00 3.57
4067 8174 2.682856 GGGTGAGGATTGTACGTACGTA 59.317 50.000 23.60 23.60 0.00 3.57
4068 8175 3.242870 GGGTGAGGATTGTACGTACGTAG 60.243 52.174 27.48 0.00 0.00 3.51
4069 8176 3.357897 GTGAGGATTGTACGTACGTAGC 58.642 50.000 27.48 20.82 0.00 3.58
4070 8177 2.030823 TGAGGATTGTACGTACGTAGCG 59.969 50.000 27.48 13.51 0.00 4.26
4071 8178 2.279741 AGGATTGTACGTACGTAGCGA 58.720 47.619 27.48 20.36 0.00 4.93
4072 8179 2.286294 AGGATTGTACGTACGTAGCGAG 59.714 50.000 27.48 5.45 0.00 5.03
4073 8180 2.285220 GGATTGTACGTACGTAGCGAGA 59.715 50.000 27.48 12.36 0.00 4.04
4074 8181 3.530049 GATTGTACGTACGTAGCGAGAG 58.470 50.000 27.48 0.00 0.00 3.20
4075 8182 1.996292 TGTACGTACGTAGCGAGAGT 58.004 50.000 27.48 1.19 0.00 3.24
4076 8183 3.145212 TGTACGTACGTAGCGAGAGTA 57.855 47.619 27.48 2.77 0.00 2.59
4077 8184 3.706698 TGTACGTACGTAGCGAGAGTAT 58.293 45.455 27.48 0.00 0.00 2.12
4078 8185 4.855531 TGTACGTACGTAGCGAGAGTATA 58.144 43.478 27.48 1.40 0.00 1.47
4079 8186 5.461526 TGTACGTACGTAGCGAGAGTATAT 58.538 41.667 27.48 0.00 0.00 0.86
4080 8187 5.569441 TGTACGTACGTAGCGAGAGTATATC 59.431 44.000 27.48 11.81 0.00 1.63
4081 8188 3.923461 ACGTACGTAGCGAGAGTATATCC 59.077 47.826 21.41 0.00 0.00 2.59
4082 8189 3.305629 CGTACGTAGCGAGAGTATATCCC 59.694 52.174 7.22 0.00 0.00 3.85
4083 8190 2.344950 ACGTAGCGAGAGTATATCCCG 58.655 52.381 0.00 0.00 0.00 5.14
4084 8191 2.028658 ACGTAGCGAGAGTATATCCCGA 60.029 50.000 0.00 0.00 0.00 5.14
4085 8192 2.604011 CGTAGCGAGAGTATATCCCGAG 59.396 54.545 0.00 0.00 0.00 4.63
4086 8193 2.116827 AGCGAGAGTATATCCCGAGG 57.883 55.000 0.00 0.00 0.00 4.63
4087 8194 1.629353 AGCGAGAGTATATCCCGAGGA 59.371 52.381 0.00 0.00 35.55 3.71
4088 8195 2.011222 GCGAGAGTATATCCCGAGGAG 58.989 57.143 0.00 0.00 34.05 3.69
4089 8196 2.011222 CGAGAGTATATCCCGAGGAGC 58.989 57.143 0.00 0.00 34.05 4.70
4090 8197 2.355310 CGAGAGTATATCCCGAGGAGCT 60.355 54.545 0.00 0.00 34.05 4.09
4091 8198 3.692690 GAGAGTATATCCCGAGGAGCTT 58.307 50.000 0.00 0.00 34.05 3.74
4092 8199 4.083565 GAGAGTATATCCCGAGGAGCTTT 58.916 47.826 0.00 0.00 34.05 3.51
4093 8200 3.829601 AGAGTATATCCCGAGGAGCTTTG 59.170 47.826 0.00 0.00 34.05 2.77
4094 8201 2.300437 AGTATATCCCGAGGAGCTTTGC 59.700 50.000 0.00 0.00 34.05 3.68
4095 8202 1.131638 ATATCCCGAGGAGCTTTGCA 58.868 50.000 0.00 0.00 34.05 4.08
4096 8203 0.178068 TATCCCGAGGAGCTTTGCAC 59.822 55.000 0.00 0.00 34.05 4.57
4097 8204 1.841302 ATCCCGAGGAGCTTTGCACA 61.841 55.000 0.00 0.00 34.05 4.57
4098 8205 1.377725 CCCGAGGAGCTTTGCACAT 60.378 57.895 0.00 0.00 0.00 3.21
4099 8206 1.651240 CCCGAGGAGCTTTGCACATG 61.651 60.000 0.00 0.00 0.00 3.21
4100 8207 0.957395 CCGAGGAGCTTTGCACATGT 60.957 55.000 0.00 0.00 0.00 3.21
4101 8208 1.675714 CCGAGGAGCTTTGCACATGTA 60.676 52.381 0.00 0.00 0.00 2.29
4102 8209 1.394917 CGAGGAGCTTTGCACATGTAC 59.605 52.381 0.00 0.00 0.00 2.90
4103 8210 2.704572 GAGGAGCTTTGCACATGTACT 58.295 47.619 0.00 0.00 0.00 2.73
4104 8211 2.675348 GAGGAGCTTTGCACATGTACTC 59.325 50.000 0.00 0.00 0.00 2.59
4105 8212 1.740025 GGAGCTTTGCACATGTACTCC 59.260 52.381 0.00 4.87 35.83 3.85
4106 8213 1.394917 GAGCTTTGCACATGTACTCCG 59.605 52.381 0.00 0.00 0.00 4.63
4107 8214 1.156736 GCTTTGCACATGTACTCCGT 58.843 50.000 0.00 0.00 0.00 4.69
4108 8215 1.135972 GCTTTGCACATGTACTCCGTG 60.136 52.381 0.00 0.00 36.08 4.94
4109 8216 1.464608 CTTTGCACATGTACTCCGTGG 59.535 52.381 0.00 0.00 34.14 4.94
4110 8217 0.682292 TTGCACATGTACTCCGTGGA 59.318 50.000 0.00 6.15 34.14 4.02
4111 8218 0.037697 TGCACATGTACTCCGTGGAC 60.038 55.000 0.00 0.00 34.14 4.02
4112 8219 0.037697 GCACATGTACTCCGTGGACA 60.038 55.000 0.00 0.00 34.14 4.02
4113 8220 1.996292 CACATGTACTCCGTGGACAG 58.004 55.000 0.00 0.00 34.14 3.51
4114 8221 0.246635 ACATGTACTCCGTGGACAGC 59.753 55.000 0.00 0.00 34.14 4.40
4115 8222 0.460284 CATGTACTCCGTGGACAGCC 60.460 60.000 0.00 0.00 0.00 4.85
4116 8223 0.902984 ATGTACTCCGTGGACAGCCA 60.903 55.000 0.00 0.00 43.47 4.75
4132 8239 2.368655 GCCACGAGCATTTTGGATTT 57.631 45.000 0.00 0.00 42.97 2.17
4133 8240 1.994779 GCCACGAGCATTTTGGATTTG 59.005 47.619 0.00 0.00 42.97 2.32
4134 8241 2.609350 CCACGAGCATTTTGGATTTGG 58.391 47.619 0.00 0.00 31.39 3.28
4135 8242 2.609350 CACGAGCATTTTGGATTTGGG 58.391 47.619 0.00 0.00 0.00 4.12
4136 8243 2.029110 CACGAGCATTTTGGATTTGGGT 60.029 45.455 0.00 0.00 0.00 4.51
4137 8244 2.632512 ACGAGCATTTTGGATTTGGGTT 59.367 40.909 0.00 0.00 0.00 4.11
4138 8245 3.253230 CGAGCATTTTGGATTTGGGTTC 58.747 45.455 0.00 0.00 0.00 3.62
4139 8246 3.599343 GAGCATTTTGGATTTGGGTTCC 58.401 45.455 0.00 0.00 0.00 3.62
4140 8247 2.028203 AGCATTTTGGATTTGGGTTCCG 60.028 45.455 0.00 0.00 35.94 4.30
4141 8248 2.934801 GCATTTTGGATTTGGGTTCCGG 60.935 50.000 0.00 0.00 35.94 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 180 2.091112 CCAGCAGTGAACGAGCTCG 61.091 63.158 33.45 33.45 46.33 5.03
160 181 2.386660 GCCAGCAGTGAACGAGCTC 61.387 63.158 2.73 2.73 36.26 4.09
161 182 2.358003 GCCAGCAGTGAACGAGCT 60.358 61.111 0.00 0.00 39.63 4.09
162 183 3.782244 CGCCAGCAGTGAACGAGC 61.782 66.667 0.00 0.00 0.00 5.03
163 184 3.114616 CCGCCAGCAGTGAACGAG 61.115 66.667 0.00 0.00 0.00 4.18
164 185 3.611674 TCCGCCAGCAGTGAACGA 61.612 61.111 0.00 0.00 0.00 3.85
165 186 3.414700 GTCCGCCAGCAGTGAACG 61.415 66.667 0.00 0.00 0.00 3.95
166 187 3.414700 CGTCCGCCAGCAGTGAAC 61.415 66.667 0.00 0.00 0.00 3.18
179 200 3.423154 CGTTGAGCCTTGGCGTCC 61.423 66.667 5.95 0.90 0.00 4.79
180 201 3.423154 CCGTTGAGCCTTGGCGTC 61.423 66.667 5.95 5.27 0.00 5.19
181 202 3.469863 TTCCGTTGAGCCTTGGCGT 62.470 57.895 5.95 0.00 0.00 5.68
214 241 0.462581 GCAAGGCGTGAGATGGATGA 60.463 55.000 4.11 0.00 0.00 2.92
215 242 0.463295 AGCAAGGCGTGAGATGGATG 60.463 55.000 4.11 0.00 0.00 3.51
216 243 0.254178 AAGCAAGGCGTGAGATGGAT 59.746 50.000 4.11 0.00 0.00 3.41
217 244 0.391661 GAAGCAAGGCGTGAGATGGA 60.392 55.000 4.11 0.00 0.00 3.41
218 245 1.699656 CGAAGCAAGGCGTGAGATGG 61.700 60.000 4.11 0.00 0.00 3.51
256 283 0.419459 ACCCATCCTCCTCCTTCTGT 59.581 55.000 0.00 0.00 0.00 3.41
257 284 0.835941 CACCCATCCTCCTCCTTCTG 59.164 60.000 0.00 0.00 0.00 3.02
258 285 0.719015 TCACCCATCCTCCTCCTTCT 59.281 55.000 0.00 0.00 0.00 2.85
259 286 0.833949 GTCACCCATCCTCCTCCTTC 59.166 60.000 0.00 0.00 0.00 3.46
260 287 0.621862 GGTCACCCATCCTCCTCCTT 60.622 60.000 0.00 0.00 0.00 3.36
263 290 2.435693 CCGGTCACCCATCCTCCTC 61.436 68.421 0.00 0.00 0.00 3.71
264 291 2.365635 CCGGTCACCCATCCTCCT 60.366 66.667 0.00 0.00 0.00 3.69
319 350 0.179029 GCTTTATAGGAGGCCCGCAA 60.179 55.000 0.00 0.00 37.58 4.85
320 351 1.450211 GCTTTATAGGAGGCCCGCA 59.550 57.895 0.00 0.00 37.58 5.69
406 457 3.567797 GGATTGACGCGCTGAGGC 61.568 66.667 5.73 0.00 0.00 4.70
407 458 2.892425 GGGATTGACGCGCTGAGG 60.892 66.667 5.73 0.00 0.00 3.86
408 459 2.125552 TGGGATTGACGCGCTGAG 60.126 61.111 5.73 0.00 0.00 3.35
409 460 2.125552 CTGGGATTGACGCGCTGA 60.126 61.111 5.73 0.00 0.00 4.26
410 461 3.869272 GCTGGGATTGACGCGCTG 61.869 66.667 5.73 1.02 0.00 5.18
411 462 4.393155 TGCTGGGATTGACGCGCT 62.393 61.111 5.73 0.00 34.38 5.92
416 467 2.411904 GATCGATCTGCTGGGATTGAC 58.588 52.381 18.29 0.00 38.49 3.18
423 474 0.683412 TGGATGGATCGATCTGCTGG 59.317 55.000 23.96 0.00 0.00 4.85
425 476 1.554160 GGATGGATGGATCGATCTGCT 59.446 52.381 23.96 9.64 40.51 4.24
426 477 1.277273 TGGATGGATGGATCGATCTGC 59.723 52.381 23.96 11.79 40.51 4.26
428 479 2.770802 GGATGGATGGATGGATCGATCT 59.229 50.000 23.96 6.10 40.51 2.75
430 481 2.770802 GAGGATGGATGGATGGATCGAT 59.229 50.000 0.00 0.00 0.00 3.59
431 482 2.182827 GAGGATGGATGGATGGATCGA 58.817 52.381 0.00 0.00 0.00 3.59
433 484 2.504996 GAGGAGGATGGATGGATGGATC 59.495 54.545 0.00 0.00 0.00 3.36
435 486 1.485786 GGAGGAGGATGGATGGATGGA 60.486 57.143 0.00 0.00 0.00 3.41
437 488 1.907936 GAGGAGGAGGATGGATGGATG 59.092 57.143 0.00 0.00 0.00 3.51
441 492 2.818921 CTAGGAGGAGGAGGATGGATG 58.181 57.143 0.00 0.00 0.00 3.51
450 501 2.203224 CGCTCGCTAGGAGGAGGA 60.203 66.667 9.44 0.00 43.36 3.71
507 558 1.032657 AGTCGGATGTGGAGAGACCG 61.033 60.000 0.00 0.00 44.09 4.79
508 559 0.457851 CAGTCGGATGTGGAGAGACC 59.542 60.000 0.00 0.00 39.54 3.85
510 561 1.819288 GTTCAGTCGGATGTGGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
511 562 1.468224 CGTTCAGTCGGATGTGGAGAG 60.468 57.143 0.00 0.00 0.00 3.20
513 564 1.078759 GCGTTCAGTCGGATGTGGAG 61.079 60.000 0.00 0.00 0.00 3.86
517 568 2.126071 CGGCGTTCAGTCGGATGT 60.126 61.111 0.00 0.00 45.57 3.06
733 785 2.370189 GGGTGATGAGATTCCGAGGATT 59.630 50.000 0.00 0.00 0.00 3.01
737 789 3.491342 TCTAGGGTGATGAGATTCCGAG 58.509 50.000 0.00 0.00 0.00 4.63
791 844 4.394795 CAGCGAAGAAGAAAATAACGGTG 58.605 43.478 0.00 0.00 40.18 4.94
792 845 4.062991 ACAGCGAAGAAGAAAATAACGGT 58.937 39.130 0.00 0.00 0.00 4.83
797 850 4.089493 CGACGAACAGCGAAGAAGAAAATA 59.911 41.667 0.00 0.00 44.57 1.40
834 887 3.947834 AGAATTGTATGAGGCGAAAAGGG 59.052 43.478 0.00 0.00 0.00 3.95
835 888 5.567138 AAGAATTGTATGAGGCGAAAAGG 57.433 39.130 0.00 0.00 0.00 3.11
867 920 4.109693 GGCGGCGGCGATGAAAAA 62.110 61.111 36.87 0.00 41.24 1.94
880 933 1.762222 CTATTCGTTTCTGGCGGCGG 61.762 60.000 12.43 12.43 0.00 6.13
881 934 1.636340 CTATTCGTTTCTGGCGGCG 59.364 57.895 0.51 0.51 0.00 6.46
882 935 1.352056 GCTATTCGTTTCTGGCGGC 59.648 57.895 0.00 0.00 0.00 6.53
883 936 0.652592 CTGCTATTCGTTTCTGGCGG 59.347 55.000 0.00 0.00 0.00 6.13
917 970 2.225491 TCTGTTTCTTTGTGCCGTATGC 59.775 45.455 0.00 0.00 41.77 3.14
920 973 4.966965 TTTTCTGTTTCTTTGTGCCGTA 57.033 36.364 0.00 0.00 0.00 4.02
921 974 3.859411 TTTTCTGTTTCTTTGTGCCGT 57.141 38.095 0.00 0.00 0.00 5.68
922 975 5.717038 AATTTTTCTGTTTCTTTGTGCCG 57.283 34.783 0.00 0.00 0.00 5.69
923 976 7.307493 AGAAATTTTTCTGTTTCTTTGTGCC 57.693 32.000 4.80 0.00 45.27 5.01
956 1010 1.566231 AGAAAGCTAATCCACTGGGGG 59.434 52.381 0.00 0.00 37.22 5.40
1494 1663 3.809171 CCGAACTCGACGATGTCCTCG 62.809 61.905 0.00 6.33 43.98 4.63
3249 7314 0.593773 CAAAACAAACTCCGGCGGTG 60.594 55.000 27.32 26.06 0.00 4.94
3250 7315 1.730451 CCAAAACAAACTCCGGCGGT 61.730 55.000 27.32 4.04 0.00 5.68
3251 7316 1.007849 CCAAAACAAACTCCGGCGG 60.008 57.895 22.51 22.51 0.00 6.13
3375 7441 2.488153 AGAGCCGGAGTAAACAAATTGC 59.512 45.455 5.05 0.00 0.00 3.56
3381 7447 1.053424 ACCAAGAGCCGGAGTAAACA 58.947 50.000 5.05 0.00 0.00 2.83
3448 7514 2.703007 AGGAGATTGAGACCACATAGCC 59.297 50.000 0.00 0.00 0.00 3.93
3450 7516 3.885901 TCGAGGAGATTGAGACCACATAG 59.114 47.826 0.00 0.00 0.00 2.23
3503 7573 3.847184 TCCTGGTCTGAACTCTAGAGAGA 59.153 47.826 26.57 15.32 44.74 3.10
3505 7575 4.659529 TTCCTGGTCTGAACTCTAGAGA 57.340 45.455 26.57 2.97 0.00 3.10
3506 7576 5.420421 TCATTTCCTGGTCTGAACTCTAGAG 59.580 44.000 18.49 18.49 0.00 2.43
3507 7577 5.333581 TCATTTCCTGGTCTGAACTCTAGA 58.666 41.667 0.00 0.00 0.00 2.43
3510 7580 4.103153 TGTTCATTTCCTGGTCTGAACTCT 59.897 41.667 24.65 0.00 44.84 3.24
3530 7601 8.146412 CCAATTTCTTTTTGGATCTTCTCTGTT 58.854 33.333 0.00 0.00 45.35 3.16
3540 7614 3.328505 CAGCGCCAATTTCTTTTTGGAT 58.671 40.909 2.29 0.00 45.35 3.41
3592 7670 3.883744 AAAGCAGCCACGAGGACCG 62.884 63.158 1.86 0.00 45.44 4.79
3593 7671 2.032681 AAAGCAGCCACGAGGACC 59.967 61.111 1.86 0.00 36.89 4.46
3635 7721 1.424493 CGCTCGAGGTTTCCAGATGC 61.424 60.000 15.58 0.00 0.00 3.91
3689 7775 1.121407 AAGCAGCCAACCTTTTCCCC 61.121 55.000 0.00 0.00 0.00 4.81
3736 7825 2.820037 GCTCTTCTTTCCGGCCGG 60.820 66.667 39.13 39.13 0.00 6.13
3737 7826 1.811679 GAGCTCTTCTTTCCGGCCG 60.812 63.158 21.04 21.04 0.00 6.13
3738 7827 1.811679 CGAGCTCTTCTTTCCGGCC 60.812 63.158 12.85 0.00 0.00 6.13
3775 7871 0.727398 GATGGCCTCGAAAAACCTCG 59.273 55.000 3.32 0.00 40.25 4.63
3791 7887 4.760715 CCAAGCAGGAATCCAATCTAGATG 59.239 45.833 5.86 0.76 41.22 2.90
3815 7916 3.513515 GCCTCCTCTTCTCTTCTTCTTCA 59.486 47.826 0.00 0.00 0.00 3.02
3816 7917 3.428862 CGCCTCCTCTTCTCTTCTTCTTC 60.429 52.174 0.00 0.00 0.00 2.87
3817 7918 2.495669 CGCCTCCTCTTCTCTTCTTCTT 59.504 50.000 0.00 0.00 0.00 2.52
3818 7919 2.099405 CGCCTCCTCTTCTCTTCTTCT 58.901 52.381 0.00 0.00 0.00 2.85
3819 7920 1.136110 CCGCCTCCTCTTCTCTTCTTC 59.864 57.143 0.00 0.00 0.00 2.87
3820 7921 1.190643 CCGCCTCCTCTTCTCTTCTT 58.809 55.000 0.00 0.00 0.00 2.52
3821 7922 1.326951 GCCGCCTCCTCTTCTCTTCT 61.327 60.000 0.00 0.00 0.00 2.85
3822 7923 1.142965 GCCGCCTCCTCTTCTCTTC 59.857 63.158 0.00 0.00 0.00 2.87
3823 7924 1.194781 TTGCCGCCTCCTCTTCTCTT 61.195 55.000 0.00 0.00 0.00 2.85
3824 7925 1.194781 TTTGCCGCCTCCTCTTCTCT 61.195 55.000 0.00 0.00 0.00 3.10
3832 7939 0.958822 TTTCTTTCTTTGCCGCCTCC 59.041 50.000 0.00 0.00 0.00 4.30
3848 7955 1.226379 CGCATCATGTGGCCGTTTC 60.226 57.895 0.00 0.00 0.00 2.78
3849 7956 2.876955 CGCATCATGTGGCCGTTT 59.123 55.556 0.00 0.00 0.00 3.60
3851 7958 4.783621 AGCGCATCATGTGGCCGT 62.784 61.111 11.47 0.00 0.00 5.68
3852 7959 3.945434 GAGCGCATCATGTGGCCG 61.945 66.667 11.47 0.00 0.00 6.13
3853 7960 3.589881 GGAGCGCATCATGTGGCC 61.590 66.667 11.47 0.00 0.00 5.36
3854 7961 3.945434 CGGAGCGCATCATGTGGC 61.945 66.667 11.47 0.00 0.00 5.01
3868 7975 1.729470 GCATCTTCTCCTCTCGCGGA 61.729 60.000 6.13 1.01 0.00 5.54
3869 7976 1.299773 GCATCTTCTCCTCTCGCGG 60.300 63.158 6.13 0.00 0.00 6.46
3870 7977 0.102120 AAGCATCTTCTCCTCTCGCG 59.898 55.000 0.00 0.00 0.00 5.87
3871 7978 1.851658 GAAGCATCTTCTCCTCTCGC 58.148 55.000 0.00 0.00 0.00 5.03
3872 7979 1.268999 CCGAAGCATCTTCTCCTCTCG 60.269 57.143 5.22 0.00 0.00 4.04
3873 7980 1.754226 ACCGAAGCATCTTCTCCTCTC 59.246 52.381 5.22 0.00 0.00 3.20
3874 7981 1.859302 ACCGAAGCATCTTCTCCTCT 58.141 50.000 5.22 0.00 0.00 3.69
3875 7982 2.427453 TGTACCGAAGCATCTTCTCCTC 59.573 50.000 5.22 0.00 0.00 3.71
3876 7983 2.428890 CTGTACCGAAGCATCTTCTCCT 59.571 50.000 5.22 0.00 0.00 3.69
3877 7984 2.815478 CTGTACCGAAGCATCTTCTCC 58.185 52.381 5.22 0.00 0.00 3.71
3878 7985 2.197577 GCTGTACCGAAGCATCTTCTC 58.802 52.381 5.22 0.00 40.52 2.87
3879 7986 1.469940 CGCTGTACCGAAGCATCTTCT 60.470 52.381 4.74 0.00 40.86 2.85
3880 7987 0.924090 CGCTGTACCGAAGCATCTTC 59.076 55.000 4.74 0.00 40.86 2.87
3881 7988 0.530744 TCGCTGTACCGAAGCATCTT 59.469 50.000 4.74 0.00 40.86 2.40
3882 7989 0.179134 GTCGCTGTACCGAAGCATCT 60.179 55.000 4.74 0.00 40.86 2.90
3883 7990 0.179134 AGTCGCTGTACCGAAGCATC 60.179 55.000 4.74 0.00 40.86 3.91
3884 7991 0.179134 GAGTCGCTGTACCGAAGCAT 60.179 55.000 4.74 0.00 40.86 3.79
3885 7992 1.211969 GAGTCGCTGTACCGAAGCA 59.788 57.895 4.74 0.00 40.86 3.91
3886 7993 1.516603 GGAGTCGCTGTACCGAAGC 60.517 63.158 0.00 0.00 39.17 3.86
3887 7994 1.226323 CGGAGTCGCTGTACCGAAG 60.226 63.158 0.00 0.00 46.94 3.79
3888 7995 1.518056 AACGGAGTCGCTGTACCGAA 61.518 55.000 11.27 0.00 45.00 4.30
3889 7996 1.915614 GAACGGAGTCGCTGTACCGA 61.916 60.000 11.27 0.00 45.00 4.69
3890 7997 1.513586 GAACGGAGTCGCTGTACCG 60.514 63.158 0.00 0.00 45.00 4.02
3891 7998 1.153881 GGAACGGAGTCGCTGTACC 60.154 63.158 0.00 0.00 45.00 3.34
3892 7999 0.243095 AAGGAACGGAGTCGCTGTAC 59.757 55.000 0.00 0.00 45.00 2.90
3893 8000 0.524862 GAAGGAACGGAGTCGCTGTA 59.475 55.000 0.00 0.00 45.00 2.74
3894 8001 1.289380 GAAGGAACGGAGTCGCTGT 59.711 57.895 0.00 0.00 45.00 4.40
3895 8002 1.446272 GGAAGGAACGGAGTCGCTG 60.446 63.158 0.00 0.00 45.00 5.18
3896 8003 1.878656 CTGGAAGGAACGGAGTCGCT 61.879 60.000 0.00 0.00 45.00 4.93
3897 8004 1.446272 CTGGAAGGAACGGAGTCGC 60.446 63.158 0.00 0.00 45.00 5.19
3898 8005 0.388649 CACTGGAAGGAACGGAGTCG 60.389 60.000 0.00 0.00 38.28 4.18
3899 8006 0.966920 TCACTGGAAGGAACGGAGTC 59.033 55.000 0.00 0.00 38.28 3.36
3900 8007 1.344763 CTTCACTGGAAGGAACGGAGT 59.655 52.381 0.00 0.00 45.41 3.85
3901 8008 2.086054 CTTCACTGGAAGGAACGGAG 57.914 55.000 0.00 0.00 45.52 4.63
3910 8017 1.877680 CGACATGTGCCTTCACTGGAA 60.878 52.381 1.15 0.00 43.49 3.53
3911 8018 0.320683 CGACATGTGCCTTCACTGGA 60.321 55.000 1.15 0.00 43.49 3.86
3912 8019 0.603707 ACGACATGTGCCTTCACTGG 60.604 55.000 1.15 0.00 43.49 4.00
3913 8020 1.195448 GAACGACATGTGCCTTCACTG 59.805 52.381 1.15 0.00 43.49 3.66
3914 8021 1.512926 GAACGACATGTGCCTTCACT 58.487 50.000 1.15 0.00 43.49 3.41
3915 8022 0.163788 CGAACGACATGTGCCTTCAC 59.836 55.000 1.15 0.00 43.40 3.18
3916 8023 0.249699 ACGAACGACATGTGCCTTCA 60.250 50.000 1.15 0.00 0.00 3.02
3917 8024 0.438830 GACGAACGACATGTGCCTTC 59.561 55.000 1.15 0.00 0.00 3.46
3918 8025 0.249699 TGACGAACGACATGTGCCTT 60.250 50.000 1.15 0.00 0.00 4.35
3919 8026 0.249699 TTGACGAACGACATGTGCCT 60.250 50.000 1.15 0.00 0.00 4.75
3920 8027 0.584396 TTTGACGAACGACATGTGCC 59.416 50.000 1.15 0.00 0.00 5.01
3921 8028 1.658968 GTTTGACGAACGACATGTGC 58.341 50.000 1.15 0.00 0.00 4.57
3930 8037 0.507358 GGTCAGAGCGTTTGACGAAC 59.493 55.000 4.46 0.00 46.05 3.95
3931 8038 0.599204 GGGTCAGAGCGTTTGACGAA 60.599 55.000 4.46 0.00 46.05 3.85
3932 8039 1.006571 GGGTCAGAGCGTTTGACGA 60.007 57.895 4.46 0.00 46.05 4.20
3933 8040 0.600255 AAGGGTCAGAGCGTTTGACG 60.600 55.000 1.64 0.00 44.56 4.35
3934 8041 2.067013 GTAAGGGTCAGAGCGTTTGAC 58.933 52.381 12.50 9.03 43.25 3.18
3935 8042 1.336517 CGTAAGGGTCAGAGCGTTTGA 60.337 52.381 12.50 0.00 0.00 2.69
3936 8043 1.068474 CGTAAGGGTCAGAGCGTTTG 58.932 55.000 12.50 3.31 0.00 2.93
3937 8044 0.963962 TCGTAAGGGTCAGAGCGTTT 59.036 50.000 12.50 3.45 38.47 3.60
3938 8045 1.183549 ATCGTAAGGGTCAGAGCGTT 58.816 50.000 11.98 11.98 38.47 4.84
3939 8046 1.183549 AATCGTAAGGGTCAGAGCGT 58.816 50.000 0.00 0.00 38.47 5.07
3940 8047 2.295253 AAATCGTAAGGGTCAGAGCG 57.705 50.000 0.00 0.00 38.47 5.03
3941 8048 3.863041 AGAAAATCGTAAGGGTCAGAGC 58.137 45.455 0.00 0.00 38.47 4.09
3942 8049 5.127356 ACCTAGAAAATCGTAAGGGTCAGAG 59.873 44.000 0.00 0.00 38.47 3.35
3943 8050 5.021458 ACCTAGAAAATCGTAAGGGTCAGA 58.979 41.667 0.00 0.00 38.47 3.27
3944 8051 5.340439 ACCTAGAAAATCGTAAGGGTCAG 57.660 43.478 0.00 0.00 38.47 3.51
3945 8052 5.750352 AACCTAGAAAATCGTAAGGGTCA 57.250 39.130 0.00 0.00 38.47 4.02
3946 8053 5.936372 ACAAACCTAGAAAATCGTAAGGGTC 59.064 40.000 0.00 0.00 38.47 4.46
3947 8054 5.872963 ACAAACCTAGAAAATCGTAAGGGT 58.127 37.500 0.00 0.00 38.47 4.34
3948 8055 6.206048 ACAACAAACCTAGAAAATCGTAAGGG 59.794 38.462 0.00 0.00 38.47 3.95
3949 8056 7.041644 TGACAACAAACCTAGAAAATCGTAAGG 60.042 37.037 0.00 0.00 38.47 2.69
3950 8057 7.857569 TGACAACAAACCTAGAAAATCGTAAG 58.142 34.615 0.00 0.00 0.00 2.34
3951 8058 7.789273 TGACAACAAACCTAGAAAATCGTAA 57.211 32.000 0.00 0.00 0.00 3.18
3952 8059 7.711772 TCTTGACAACAAACCTAGAAAATCGTA 59.288 33.333 0.00 0.00 35.49 3.43
3953 8060 6.540914 TCTTGACAACAAACCTAGAAAATCGT 59.459 34.615 0.00 0.00 35.49 3.73
3954 8061 6.851330 GTCTTGACAACAAACCTAGAAAATCG 59.149 38.462 0.00 0.00 35.49 3.34
3955 8062 7.139392 GGTCTTGACAACAAACCTAGAAAATC 58.861 38.462 3.08 0.00 35.49 2.17
3956 8063 6.238648 CGGTCTTGACAACAAACCTAGAAAAT 60.239 38.462 3.08 0.00 35.49 1.82
3957 8064 5.065474 CGGTCTTGACAACAAACCTAGAAAA 59.935 40.000 3.08 0.00 35.49 2.29
3958 8065 4.573201 CGGTCTTGACAACAAACCTAGAAA 59.427 41.667 3.08 0.00 35.49 2.52
3959 8066 4.124238 CGGTCTTGACAACAAACCTAGAA 58.876 43.478 3.08 0.00 35.49 2.10
3960 8067 3.493699 CCGGTCTTGACAACAAACCTAGA 60.494 47.826 0.00 0.00 35.49 2.43
3961 8068 2.806244 CCGGTCTTGACAACAAACCTAG 59.194 50.000 0.00 0.00 35.49 3.02
3962 8069 2.841215 CCGGTCTTGACAACAAACCTA 58.159 47.619 0.00 0.00 35.49 3.08
3963 8070 1.675552 CCGGTCTTGACAACAAACCT 58.324 50.000 0.00 0.00 35.49 3.50
3964 8071 0.030235 GCCGGTCTTGACAACAAACC 59.970 55.000 1.90 0.00 35.49 3.27
3965 8072 0.316689 CGCCGGTCTTGACAACAAAC 60.317 55.000 1.90 0.00 35.49 2.93
3966 8073 0.462225 TCGCCGGTCTTGACAACAAA 60.462 50.000 1.90 0.00 35.49 2.83
3967 8074 1.144276 TCGCCGGTCTTGACAACAA 59.856 52.632 1.90 0.00 34.65 2.83
3968 8075 1.593209 GTCGCCGGTCTTGACAACA 60.593 57.895 1.90 0.00 32.91 3.33
3969 8076 2.315386 GGTCGCCGGTCTTGACAAC 61.315 63.158 1.90 0.00 34.32 3.32
3970 8077 2.029964 GGTCGCCGGTCTTGACAA 59.970 61.111 1.90 0.00 34.32 3.18
3971 8078 2.915659 AGGTCGCCGGTCTTGACA 60.916 61.111 1.90 0.00 34.32 3.58
3972 8079 2.432628 CAGGTCGCCGGTCTTGAC 60.433 66.667 1.90 6.52 0.00 3.18
3973 8080 4.373116 GCAGGTCGCCGGTCTTGA 62.373 66.667 1.90 0.00 32.94 3.02
3989 8096 2.513666 TCCGGTTCATGCATCGGC 60.514 61.111 12.58 1.63 41.98 5.54
3990 8097 0.461870 TTCTCCGGTTCATGCATCGG 60.462 55.000 11.12 11.12 43.42 4.18
3991 8098 1.368641 TTTCTCCGGTTCATGCATCG 58.631 50.000 0.00 0.00 0.00 3.84
3992 8099 2.749621 AGTTTTCTCCGGTTCATGCATC 59.250 45.455 0.00 0.00 0.00 3.91
3993 8100 2.795329 AGTTTTCTCCGGTTCATGCAT 58.205 42.857 0.00 0.00 0.00 3.96
3994 8101 2.270352 AGTTTTCTCCGGTTCATGCA 57.730 45.000 0.00 0.00 0.00 3.96
3995 8102 2.096013 GCTAGTTTTCTCCGGTTCATGC 59.904 50.000 0.00 0.00 0.00 4.06
3996 8103 3.600388 AGCTAGTTTTCTCCGGTTCATG 58.400 45.455 0.00 0.00 0.00 3.07
3997 8104 3.260884 TGAGCTAGTTTTCTCCGGTTCAT 59.739 43.478 0.00 0.00 0.00 2.57
3998 8105 2.631062 TGAGCTAGTTTTCTCCGGTTCA 59.369 45.455 0.00 0.00 0.00 3.18
3999 8106 3.314541 TGAGCTAGTTTTCTCCGGTTC 57.685 47.619 0.00 0.00 0.00 3.62
4000 8107 3.008049 ACATGAGCTAGTTTTCTCCGGTT 59.992 43.478 0.00 0.00 0.00 4.44
4001 8108 2.567615 ACATGAGCTAGTTTTCTCCGGT 59.432 45.455 0.00 0.00 0.00 5.28
4002 8109 3.252974 ACATGAGCTAGTTTTCTCCGG 57.747 47.619 0.00 0.00 0.00 5.14
4003 8110 3.372206 CCAACATGAGCTAGTTTTCTCCG 59.628 47.826 0.00 0.00 0.00 4.63
4004 8111 4.579869 TCCAACATGAGCTAGTTTTCTCC 58.420 43.478 0.00 0.00 0.00 3.71
4005 8112 5.065731 CCATCCAACATGAGCTAGTTTTCTC 59.934 44.000 0.00 0.00 0.00 2.87
4006 8113 4.946157 CCATCCAACATGAGCTAGTTTTCT 59.054 41.667 0.00 0.00 0.00 2.52
4007 8114 4.439289 GCCATCCAACATGAGCTAGTTTTC 60.439 45.833 0.00 0.00 0.00 2.29
4008 8115 3.445096 GCCATCCAACATGAGCTAGTTTT 59.555 43.478 0.00 0.00 0.00 2.43
4009 8116 3.019564 GCCATCCAACATGAGCTAGTTT 58.980 45.455 0.00 0.00 0.00 2.66
4010 8117 2.025981 TGCCATCCAACATGAGCTAGTT 60.026 45.455 0.00 0.00 0.00 2.24
4011 8118 1.561076 TGCCATCCAACATGAGCTAGT 59.439 47.619 0.00 0.00 0.00 2.57
4012 8119 1.945394 GTGCCATCCAACATGAGCTAG 59.055 52.381 0.00 0.00 0.00 3.42
4013 8120 1.408683 GGTGCCATCCAACATGAGCTA 60.409 52.381 0.00 0.00 0.00 3.32
4014 8121 0.682209 GGTGCCATCCAACATGAGCT 60.682 55.000 0.00 0.00 0.00 4.09
4015 8122 0.682209 AGGTGCCATCCAACATGAGC 60.682 55.000 0.00 0.00 31.91 4.26
4016 8123 1.100510 CAGGTGCCATCCAACATGAG 58.899 55.000 0.00 0.00 31.91 2.90
4017 8124 0.405198 ACAGGTGCCATCCAACATGA 59.595 50.000 0.00 0.00 31.91 3.07
4018 8125 0.813184 GACAGGTGCCATCCAACATG 59.187 55.000 0.00 0.00 31.91 3.21
4019 8126 0.405198 TGACAGGTGCCATCCAACAT 59.595 50.000 0.00 0.00 31.91 2.71
4020 8127 0.250858 CTGACAGGTGCCATCCAACA 60.251 55.000 0.00 0.00 31.91 3.33
4021 8128 0.962356 CCTGACAGGTGCCATCCAAC 60.962 60.000 13.84 0.00 0.00 3.77
4022 8129 1.379916 CCTGACAGGTGCCATCCAA 59.620 57.895 13.84 0.00 0.00 3.53
4023 8130 3.080641 CCTGACAGGTGCCATCCA 58.919 61.111 13.84 0.00 0.00 3.41
4024 8131 2.439156 GCCTGACAGGTGCCATCC 60.439 66.667 22.58 0.23 37.80 3.51
4025 8132 1.748122 CAGCCTGACAGGTGCCATC 60.748 63.158 22.58 4.94 37.80 3.51
4026 8133 2.353958 CAGCCTGACAGGTGCCAT 59.646 61.111 22.58 1.79 37.80 4.40
4027 8134 3.957586 CCAGCCTGACAGGTGCCA 61.958 66.667 22.58 0.00 37.80 4.92
4028 8135 3.958860 ACCAGCCTGACAGGTGCC 61.959 66.667 22.58 6.43 36.66 5.01
4031 8138 3.252284 CCCACCAGCCTGACAGGT 61.252 66.667 22.58 7.04 39.08 4.00
4032 8139 3.252284 ACCCACCAGCCTGACAGG 61.252 66.667 17.83 17.83 38.80 4.00
4033 8140 2.033141 CACCCACCAGCCTGACAG 59.967 66.667 0.00 0.00 0.00 3.51
4034 8141 2.447572 TCACCCACCAGCCTGACA 60.448 61.111 0.00 0.00 0.00 3.58
4035 8142 2.348998 CTCACCCACCAGCCTGAC 59.651 66.667 0.00 0.00 0.00 3.51
4036 8143 2.770868 ATCCTCACCCACCAGCCTGA 62.771 60.000 0.00 0.00 0.00 3.86
4037 8144 1.856539 AATCCTCACCCACCAGCCTG 61.857 60.000 0.00 0.00 0.00 4.85
4038 8145 1.542375 AATCCTCACCCACCAGCCT 60.542 57.895 0.00 0.00 0.00 4.58
4039 8146 1.379044 CAATCCTCACCCACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
4040 8147 0.618458 TACAATCCTCACCCACCAGC 59.382 55.000 0.00 0.00 0.00 4.85
4041 8148 1.405526 CGTACAATCCTCACCCACCAG 60.406 57.143 0.00 0.00 0.00 4.00
4042 8149 0.611200 CGTACAATCCTCACCCACCA 59.389 55.000 0.00 0.00 0.00 4.17
4043 8150 0.611714 ACGTACAATCCTCACCCACC 59.388 55.000 0.00 0.00 0.00 4.61
4044 8151 2.733227 CGTACGTACAATCCTCACCCAC 60.733 54.545 24.50 0.00 0.00 4.61
4045 8152 1.473677 CGTACGTACAATCCTCACCCA 59.526 52.381 24.50 0.00 0.00 4.51
4046 8153 1.474077 ACGTACGTACAATCCTCACCC 59.526 52.381 21.41 0.00 0.00 4.61
4047 8154 2.927553 ACGTACGTACAATCCTCACC 57.072 50.000 21.41 0.00 0.00 4.02
4048 8155 3.357897 GCTACGTACGTACAATCCTCAC 58.642 50.000 23.60 0.00 0.00 3.51
4049 8156 2.030823 CGCTACGTACGTACAATCCTCA 59.969 50.000 23.60 2.74 0.00 3.86
4050 8157 2.285220 TCGCTACGTACGTACAATCCTC 59.715 50.000 23.60 7.82 0.00 3.71
4051 8158 2.279741 TCGCTACGTACGTACAATCCT 58.720 47.619 23.60 0.00 0.00 3.24
4052 8159 2.285220 TCTCGCTACGTACGTACAATCC 59.715 50.000 23.60 9.43 0.00 3.01
4053 8160 3.000724 ACTCTCGCTACGTACGTACAATC 59.999 47.826 23.60 11.87 0.00 2.67
4054 8161 2.932614 ACTCTCGCTACGTACGTACAAT 59.067 45.455 23.60 14.51 0.00 2.71
4055 8162 2.337583 ACTCTCGCTACGTACGTACAA 58.662 47.619 23.60 11.47 0.00 2.41
4056 8163 1.996292 ACTCTCGCTACGTACGTACA 58.004 50.000 23.60 7.39 0.00 2.90
4057 8164 5.003967 GGATATACTCTCGCTACGTACGTAC 59.996 48.000 23.60 15.90 0.00 3.67
4058 8165 5.096169 GGATATACTCTCGCTACGTACGTA 58.904 45.833 25.41 25.41 0.00 3.57
4059 8166 3.923461 GGATATACTCTCGCTACGTACGT 59.077 47.826 25.98 25.98 0.00 3.57
4060 8167 3.305629 GGGATATACTCTCGCTACGTACG 59.694 52.174 15.01 15.01 0.00 3.67
4061 8168 3.305629 CGGGATATACTCTCGCTACGTAC 59.694 52.174 0.00 0.00 41.83 3.67
4062 8169 3.515630 CGGGATATACTCTCGCTACGTA 58.484 50.000 0.00 0.00 41.83 3.57
4063 8170 2.344950 CGGGATATACTCTCGCTACGT 58.655 52.381 0.00 0.00 41.83 3.57
4070 8177 3.359695 AGCTCCTCGGGATATACTCTC 57.640 52.381 0.00 0.00 0.00 3.20
4071 8178 3.818295 AAGCTCCTCGGGATATACTCT 57.182 47.619 0.00 0.00 0.00 3.24
4072 8179 3.615351 GCAAAGCTCCTCGGGATATACTC 60.615 52.174 0.00 0.00 0.00 2.59
4073 8180 2.300437 GCAAAGCTCCTCGGGATATACT 59.700 50.000 0.00 0.00 0.00 2.12
4074 8181 2.037251 TGCAAAGCTCCTCGGGATATAC 59.963 50.000 0.00 0.00 0.00 1.47
4075 8182 2.037251 GTGCAAAGCTCCTCGGGATATA 59.963 50.000 0.00 0.00 0.00 0.86
4076 8183 1.131638 TGCAAAGCTCCTCGGGATAT 58.868 50.000 0.00 0.00 0.00 1.63
4077 8184 0.178068 GTGCAAAGCTCCTCGGGATA 59.822 55.000 0.00 0.00 0.00 2.59
4078 8185 1.078143 GTGCAAAGCTCCTCGGGAT 60.078 57.895 0.00 0.00 0.00 3.85
4079 8186 1.841302 ATGTGCAAAGCTCCTCGGGA 61.841 55.000 0.00 0.00 0.00 5.14
4080 8187 1.377725 ATGTGCAAAGCTCCTCGGG 60.378 57.895 0.00 0.00 0.00 5.14
4081 8188 0.957395 ACATGTGCAAAGCTCCTCGG 60.957 55.000 0.00 0.00 0.00 4.63
4082 8189 1.394917 GTACATGTGCAAAGCTCCTCG 59.605 52.381 9.11 0.00 0.00 4.63
4083 8190 2.675348 GAGTACATGTGCAAAGCTCCTC 59.325 50.000 16.62 0.00 0.00 3.71
4084 8191 2.616510 GGAGTACATGTGCAAAGCTCCT 60.617 50.000 16.62 0.00 38.30 3.69
4085 8192 1.740025 GGAGTACATGTGCAAAGCTCC 59.260 52.381 16.62 9.75 35.00 4.70
4086 8193 1.394917 CGGAGTACATGTGCAAAGCTC 59.605 52.381 16.62 4.28 0.00 4.09
4087 8194 1.270839 ACGGAGTACATGTGCAAAGCT 60.271 47.619 16.62 0.00 41.94 3.74
4088 8195 1.135972 CACGGAGTACATGTGCAAAGC 60.136 52.381 16.62 2.56 41.61 3.51
4089 8196 1.464608 CCACGGAGTACATGTGCAAAG 59.535 52.381 16.62 8.57 41.61 2.77
4090 8197 1.070914 TCCACGGAGTACATGTGCAAA 59.929 47.619 16.62 0.00 41.61 3.68
4091 8198 0.682292 TCCACGGAGTACATGTGCAA 59.318 50.000 16.62 0.00 41.61 4.08
4092 8199 0.037697 GTCCACGGAGTACATGTGCA 60.038 55.000 16.62 0.00 41.61 4.57
4093 8200 0.037697 TGTCCACGGAGTACATGTGC 60.038 55.000 9.11 7.34 41.61 4.57
4094 8201 1.996292 CTGTCCACGGAGTACATGTG 58.004 55.000 9.11 0.23 41.61 3.21
4095 8202 0.246635 GCTGTCCACGGAGTACATGT 59.753 55.000 2.69 2.69 41.61 3.21
4096 8203 0.460284 GGCTGTCCACGGAGTACATG 60.460 60.000 0.00 0.00 41.61 3.21
4097 8204 0.902984 TGGCTGTCCACGGAGTACAT 60.903 55.000 0.00 0.00 41.61 2.29
4098 8205 1.532078 TGGCTGTCCACGGAGTACA 60.532 57.895 0.00 0.00 41.61 2.90
4099 8206 3.373226 TGGCTGTCCACGGAGTAC 58.627 61.111 0.00 0.00 41.61 2.73
4107 8214 0.537143 AAAATGCTCGTGGCTGTCCA 60.537 50.000 5.00 0.00 42.39 4.02
4108 8215 0.109597 CAAAATGCTCGTGGCTGTCC 60.110 55.000 5.00 0.00 42.39 4.02
4109 8216 0.109597 CCAAAATGCTCGTGGCTGTC 60.110 55.000 5.00 0.00 42.39 3.51
4110 8217 0.537143 TCCAAAATGCTCGTGGCTGT 60.537 50.000 5.00 0.00 42.39 4.40
4111 8218 0.813184 ATCCAAAATGCTCGTGGCTG 59.187 50.000 5.00 0.00 42.39 4.85
4112 8219 1.549203 AATCCAAAATGCTCGTGGCT 58.451 45.000 5.00 0.00 42.39 4.75
4113 8220 1.994779 CAAATCCAAAATGCTCGTGGC 59.005 47.619 0.00 0.00 42.22 5.01
4114 8221 2.609350 CCAAATCCAAAATGCTCGTGG 58.391 47.619 0.00 0.00 0.00 4.94
4115 8222 2.029110 ACCCAAATCCAAAATGCTCGTG 60.029 45.455 0.00 0.00 0.00 4.35
4116 8223 2.247358 ACCCAAATCCAAAATGCTCGT 58.753 42.857 0.00 0.00 0.00 4.18
4117 8224 3.253230 GAACCCAAATCCAAAATGCTCG 58.747 45.455 0.00 0.00 0.00 5.03
4118 8225 3.599343 GGAACCCAAATCCAAAATGCTC 58.401 45.455 0.00 0.00 36.92 4.26
4119 8226 2.028203 CGGAACCCAAATCCAAAATGCT 60.028 45.455 0.00 0.00 36.74 3.79
4120 8227 2.345876 CGGAACCCAAATCCAAAATGC 58.654 47.619 0.00 0.00 36.74 3.56
4121 8228 2.971307 CCGGAACCCAAATCCAAAATG 58.029 47.619 0.00 0.00 36.74 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.