Multiple sequence alignment - TraesCS4A01G418900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G418900 chr4A 100.000 4743 0 0 1 4743 688951250 688955992 0 8722
1 TraesCS4A01G418900 chr4A 98.902 4282 44 2 1 4280 596694119 596698399 0 7644
2 TraesCS4A01G418900 chr4A 98.155 4282 74 3 1 4280 632782105 632777827 0 7465
3 TraesCS4A01G418900 chr4A 99.558 453 2 0 4291 4743 542635655 542636107 0 826
4 TraesCS4A01G418900 chr1B 99.182 4281 32 2 1 4280 167208818 167213096 0 7709
5 TraesCS4A01G418900 chr7B 99.159 4281 35 1 1 4280 359272125 359276405 0 7705
6 TraesCS4A01G418900 chr5A 98.901 4278 37 6 1 4273 591649132 591653404 0 7631
7 TraesCS4A01G418900 chr2A 98.271 4280 72 2 1 4280 165596861 165601138 0 7492
8 TraesCS4A01G418900 chr6A 97.921 4280 86 3 1 4280 366115461 366119737 0 7408
9 TraesCS4A01G418900 chr6A 97.896 4277 82 7 1 4271 354540960 354536686 0 7393
10 TraesCS4A01G418900 chr5B 97.852 4283 87 5 1 4280 321586522 321590802 0 7395
11 TraesCS4A01G418900 chrUn 100.000 453 0 0 4291 4743 56617406 56617858 0 837
12 TraesCS4A01G418900 chrUn 100.000 453 0 0 4291 4743 414073412 414072960 0 837
13 TraesCS4A01G418900 chrUn 99.779 453 1 0 4291 4743 245815523 245815071 0 832
14 TraesCS4A01G418900 chrUn 99.779 453 1 0 4291 4743 371626463 371626915 0 832
15 TraesCS4A01G418900 chrUn 99.558 453 2 0 4291 4743 417657049 417656597 0 826
16 TraesCS4A01G418900 chr7A 99.778 451 1 0 4291 4741 550289482 550289032 0 828
17 TraesCS4A01G418900 chr6B 99.558 453 2 0 4291 4743 228719484 228719936 0 826
18 TraesCS4A01G418900 chr6B 99.558 453 2 0 4291 4743 429214419 429214871 0 826
19 TraesCS4A01G418900 chr4B 99.558 453 2 0 4291 4743 415371646 415371194 0 826


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G418900 chr4A 688951250 688955992 4742 False 8722 8722 100.000 1 4743 1 chr4A.!!$F3 4742
1 TraesCS4A01G418900 chr4A 596694119 596698399 4280 False 7644 7644 98.902 1 4280 1 chr4A.!!$F2 4279
2 TraesCS4A01G418900 chr4A 632777827 632782105 4278 True 7465 7465 98.155 1 4280 1 chr4A.!!$R1 4279
3 TraesCS4A01G418900 chr1B 167208818 167213096 4278 False 7709 7709 99.182 1 4280 1 chr1B.!!$F1 4279
4 TraesCS4A01G418900 chr7B 359272125 359276405 4280 False 7705 7705 99.159 1 4280 1 chr7B.!!$F1 4279
5 TraesCS4A01G418900 chr5A 591649132 591653404 4272 False 7631 7631 98.901 1 4273 1 chr5A.!!$F1 4272
6 TraesCS4A01G418900 chr2A 165596861 165601138 4277 False 7492 7492 98.271 1 4280 1 chr2A.!!$F1 4279
7 TraesCS4A01G418900 chr6A 366115461 366119737 4276 False 7408 7408 97.921 1 4280 1 chr6A.!!$F1 4279
8 TraesCS4A01G418900 chr6A 354536686 354540960 4274 True 7393 7393 97.896 1 4271 1 chr6A.!!$R1 4270
9 TraesCS4A01G418900 chr5B 321586522 321590802 4280 False 7395 7395 97.852 1 4280 1 chr5B.!!$F1 4279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 615 2.477893 AAATGTGTGGGGGCCTGGA 61.478 57.895 0.84 0.0 0.00 3.86 F
1142 1145 3.197766 TCATTTCTGCTAACCCTGTCGAT 59.802 43.478 0.00 0.0 0.00 3.59 F
1421 1424 2.048222 CGCTCAGAAAGGCGGTCA 60.048 61.111 0.00 0.0 46.42 4.02 F
1569 1572 2.262915 CGAAGCCGACCAAGCTCT 59.737 61.111 0.00 0.0 40.49 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1424 0.182775 AAGGGTCGTGGACAAGCTTT 59.817 50.0 0.0 0.0 33.68 3.51 R
3152 3162 6.116126 ACCTTCGAGCATAAGAAATAGCTTT 58.884 36.0 0.0 0.0 37.48 3.51 R
3158 3168 6.415573 AGGTTTACCTTCGAGCATAAGAAAT 58.584 36.0 0.0 0.0 46.09 2.17 R
3924 3934 0.250901 CCTAAGCACAGGCACCTTGT 60.251 55.0 0.0 0.0 44.61 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.617274 GCCACTTCCCTTCGTGCAC 61.617 63.158 6.82 6.82 0.00 4.57
309 310 2.856988 AGGTTGCCGGGGAAGGAA 60.857 61.111 2.18 0.00 0.00 3.36
614 615 2.477893 AAATGTGTGGGGGCCTGGA 61.478 57.895 0.84 0.00 0.00 3.86
1142 1145 3.197766 TCATTTCTGCTAACCCTGTCGAT 59.802 43.478 0.00 0.00 0.00 3.59
1421 1424 2.048222 CGCTCAGAAAGGCGGTCA 60.048 61.111 0.00 0.00 46.42 4.02
1569 1572 2.262915 CGAAGCCGACCAAGCTCT 59.737 61.111 0.00 0.00 40.49 4.09
3924 3934 4.751767 AATGTCCTTTGCAGGTTCAAAA 57.248 36.364 0.00 0.00 41.69 2.44
3995 4005 2.165437 GTGAGAGGATCGCTCTTCACTT 59.835 50.000 20.68 3.97 42.67 3.16
4024 4034 6.998673 AGGATTTTTATAACTTAGGCGAGCAT 59.001 34.615 0.00 0.00 0.00 3.79
4317 4328 3.650647 ACGAAGTTGCCATGGATGT 57.349 47.368 18.40 0.00 37.78 3.06
4319 4330 1.003580 ACGAAGTTGCCATGGATGTCT 59.996 47.619 18.40 4.61 37.78 3.41
4320 4331 2.086869 CGAAGTTGCCATGGATGTCTT 58.913 47.619 18.40 13.19 0.00 3.01
4321 4332 2.096496 CGAAGTTGCCATGGATGTCTTC 59.904 50.000 18.40 19.35 0.00 2.87
4322 4333 2.134789 AGTTGCCATGGATGTCTTCC 57.865 50.000 18.40 0.00 45.69 3.46
4337 4348 3.982829 TCCGACTGGAGTCTCGTG 58.017 61.111 5.30 0.00 42.66 4.35
4339 4350 0.536687 TCCGACTGGAGTCTCGTGTT 60.537 55.000 5.30 0.00 42.66 3.32
4340 4351 0.387367 CCGACTGGAGTCTCGTGTTG 60.387 60.000 5.30 0.00 42.66 3.33
4341 4352 1.004277 CGACTGGAGTCTCGTGTTGC 61.004 60.000 5.30 0.00 42.66 4.17
4344 4355 1.287730 CTGGAGTCTCGTGTTGCAGC 61.288 60.000 0.00 0.00 0.00 5.25
4345 4356 1.005630 GGAGTCTCGTGTTGCAGCT 60.006 57.895 1.17 0.00 0.00 4.24
4346 4357 1.287730 GGAGTCTCGTGTTGCAGCTG 61.288 60.000 10.11 10.11 0.00 4.24
4347 4358 0.598680 GAGTCTCGTGTTGCAGCTGT 60.599 55.000 16.64 0.00 0.00 4.40
4348 4359 0.598680 AGTCTCGTGTTGCAGCTGTC 60.599 55.000 16.64 8.39 0.00 3.51
4349 4360 1.661509 TCTCGTGTTGCAGCTGTCG 60.662 57.895 16.64 12.29 0.00 4.35
4350 4361 1.951130 CTCGTGTTGCAGCTGTCGT 60.951 57.895 16.64 0.00 0.00 4.34
4351 4362 2.150809 CTCGTGTTGCAGCTGTCGTG 62.151 60.000 16.64 9.60 0.00 4.35
4352 4363 2.633657 GTGTTGCAGCTGTCGTGG 59.366 61.111 16.64 0.00 0.00 4.94
4353 4364 1.887242 GTGTTGCAGCTGTCGTGGA 60.887 57.895 16.64 0.00 0.00 4.02
4354 4365 1.887242 TGTTGCAGCTGTCGTGGAC 60.887 57.895 16.64 6.02 0.00 4.02
4355 4366 1.595382 GTTGCAGCTGTCGTGGACT 60.595 57.895 16.64 0.00 33.15 3.85
4356 4367 0.319555 GTTGCAGCTGTCGTGGACTA 60.320 55.000 16.64 0.00 33.15 2.59
4357 4368 0.608130 TTGCAGCTGTCGTGGACTAT 59.392 50.000 16.64 0.00 33.15 2.12
4358 4369 0.173481 TGCAGCTGTCGTGGACTATC 59.827 55.000 16.64 0.00 33.15 2.08
4359 4370 0.457851 GCAGCTGTCGTGGACTATCT 59.542 55.000 16.64 0.00 33.15 1.98
4360 4371 1.535015 GCAGCTGTCGTGGACTATCTC 60.535 57.143 16.64 0.00 33.15 2.75
4361 4372 1.018148 AGCTGTCGTGGACTATCTCG 58.982 55.000 0.00 0.00 33.15 4.04
4362 4373 0.592754 GCTGTCGTGGACTATCTCGC 60.593 60.000 0.00 0.00 33.15 5.03
4363 4374 0.733150 CTGTCGTGGACTATCTCGCA 59.267 55.000 0.00 0.00 33.15 5.10
4364 4375 1.132453 CTGTCGTGGACTATCTCGCAA 59.868 52.381 0.00 0.00 33.15 4.85
4365 4376 1.132453 TGTCGTGGACTATCTCGCAAG 59.868 52.381 0.00 0.00 33.15 4.01
4366 4377 0.738975 TCGTGGACTATCTCGCAAGG 59.261 55.000 0.00 0.00 38.47 3.61
4367 4378 0.872021 CGTGGACTATCTCGCAAGGC 60.872 60.000 0.00 0.00 38.47 4.35
4368 4379 0.461961 GTGGACTATCTCGCAAGGCT 59.538 55.000 0.00 0.00 38.47 4.58
4369 4380 0.461548 TGGACTATCTCGCAAGGCTG 59.538 55.000 0.00 0.00 38.47 4.85
4370 4381 0.747255 GGACTATCTCGCAAGGCTGA 59.253 55.000 0.00 0.00 38.47 4.26
4371 4382 1.137086 GGACTATCTCGCAAGGCTGAA 59.863 52.381 0.00 0.00 38.47 3.02
4372 4383 2.468831 GACTATCTCGCAAGGCTGAAG 58.531 52.381 0.00 0.00 38.47 3.02
4373 4384 1.137872 ACTATCTCGCAAGGCTGAAGG 59.862 52.381 0.00 0.00 38.47 3.46
4374 4385 0.179073 TATCTCGCAAGGCTGAAGGC 60.179 55.000 0.00 0.00 41.43 4.35
4383 4394 3.512516 GCTGAAGGCCGCCACATC 61.513 66.667 13.15 7.52 34.27 3.06
4384 4395 2.270205 CTGAAGGCCGCCACATCT 59.730 61.111 13.15 0.00 0.00 2.90
4385 4396 1.817099 CTGAAGGCCGCCACATCTC 60.817 63.158 13.15 0.58 0.00 2.75
4386 4397 2.892425 GAAGGCCGCCACATCTCG 60.892 66.667 13.15 0.00 0.00 4.04
4390 4401 3.643978 GCCGCCACATCTCGCATC 61.644 66.667 0.00 0.00 0.00 3.91
4391 4402 3.333189 CCGCCACATCTCGCATCG 61.333 66.667 0.00 0.00 0.00 3.84
4392 4403 2.278792 CGCCACATCTCGCATCGA 60.279 61.111 0.00 0.00 0.00 3.59
4393 4404 2.580470 CGCCACATCTCGCATCGAC 61.580 63.158 0.00 0.00 0.00 4.20
4394 4405 1.227089 GCCACATCTCGCATCGACT 60.227 57.895 0.00 0.00 0.00 4.18
4395 4406 1.211818 GCCACATCTCGCATCGACTC 61.212 60.000 0.00 0.00 0.00 3.36
4396 4407 0.932123 CCACATCTCGCATCGACTCG 60.932 60.000 0.00 0.00 0.00 4.18
4397 4408 0.028110 CACATCTCGCATCGACTCGA 59.972 55.000 3.06 3.06 41.13 4.04
4398 4409 0.028242 ACATCTCGCATCGACTCGAC 59.972 55.000 2.53 0.00 39.18 4.20
4399 4410 0.989315 CATCTCGCATCGACTCGACG 60.989 60.000 2.53 4.22 39.18 5.12
4400 4411 2.703425 ATCTCGCATCGACTCGACGC 62.703 60.000 9.41 9.41 41.69 5.19
4401 4412 3.441808 CTCGCATCGACTCGACGCT 62.442 63.158 16.61 0.00 42.93 5.07
4402 4413 3.013990 CGCATCGACTCGACGCTC 61.014 66.667 16.61 0.56 42.93 5.03
4403 4414 2.405594 GCATCGACTCGACGCTCT 59.594 61.111 12.08 0.00 41.86 4.09
4404 4415 1.936880 GCATCGACTCGACGCTCTG 60.937 63.158 12.08 3.68 41.86 3.35
4405 4416 1.297967 CATCGACTCGACGCTCTGG 60.298 63.158 2.53 0.00 39.18 3.86
4406 4417 3.114647 ATCGACTCGACGCTCTGGC 62.115 63.158 2.53 0.00 39.18 4.85
4407 4418 4.838486 CGACTCGACGCTCTGGCC 62.838 72.222 0.00 0.00 34.44 5.36
4408 4419 3.444805 GACTCGACGCTCTGGCCT 61.445 66.667 3.32 0.00 34.44 5.19
4409 4420 3.691744 GACTCGACGCTCTGGCCTG 62.692 68.421 3.32 2.92 34.44 4.85
4410 4421 3.443925 CTCGACGCTCTGGCCTGA 61.444 66.667 12.29 12.29 34.44 3.86
4411 4422 3.408501 CTCGACGCTCTGGCCTGAG 62.409 68.421 29.97 29.97 37.16 3.35
4412 4423 4.504916 CGACGCTCTGGCCTGAGG 62.505 72.222 33.21 25.89 34.82 3.86
4413 4424 3.071206 GACGCTCTGGCCTGAGGA 61.071 66.667 33.21 13.37 34.82 3.71
4414 4425 3.073735 ACGCTCTGGCCTGAGGAG 61.074 66.667 33.21 21.26 34.82 3.69
4415 4426 2.757508 CGCTCTGGCCTGAGGAGA 60.758 66.667 33.21 14.67 34.82 3.71
4416 4427 2.899505 GCTCTGGCCTGAGGAGAC 59.100 66.667 33.21 17.62 34.82 3.36
4417 4428 1.986757 GCTCTGGCCTGAGGAGACA 60.987 63.158 33.21 3.50 34.82 3.41
4418 4429 1.896694 CTCTGGCCTGAGGAGACAC 59.103 63.158 27.50 0.00 0.00 3.67
4419 4430 0.614415 CTCTGGCCTGAGGAGACACT 60.614 60.000 27.50 0.00 0.00 3.55
4420 4431 0.178921 TCTGGCCTGAGGAGACACTT 60.179 55.000 8.48 0.00 0.00 3.16
4421 4432 0.248843 CTGGCCTGAGGAGACACTTC 59.751 60.000 0.65 0.00 0.00 3.01
4422 4433 0.471780 TGGCCTGAGGAGACACTTCA 60.472 55.000 0.65 0.00 33.64 3.02
4445 4456 3.056628 GACCTTGAGTCGCTGATGG 57.943 57.895 0.00 0.00 35.30 3.51
4446 4457 1.078848 ACCTTGAGTCGCTGATGGC 60.079 57.895 0.00 0.00 37.64 4.40
4447 4458 1.817099 CCTTGAGTCGCTGATGGCC 60.817 63.158 0.00 0.00 37.74 5.36
4448 4459 1.817099 CTTGAGTCGCTGATGGCCC 60.817 63.158 0.00 0.00 37.74 5.80
4449 4460 3.664025 TTGAGTCGCTGATGGCCCG 62.664 63.158 0.00 0.00 37.74 6.13
4455 4466 2.751436 GCTGATGGCCCGCTTGAA 60.751 61.111 0.00 0.00 34.27 2.69
4456 4467 3.056313 GCTGATGGCCCGCTTGAAC 62.056 63.158 0.00 0.00 34.27 3.18
4457 4468 1.675310 CTGATGGCCCGCTTGAACA 60.675 57.895 0.00 0.00 0.00 3.18
4458 4469 1.926511 CTGATGGCCCGCTTGAACAC 61.927 60.000 0.00 0.00 0.00 3.32
4459 4470 3.039202 GATGGCCCGCTTGAACACG 62.039 63.158 0.00 0.00 0.00 4.49
4460 4471 3.545124 ATGGCCCGCTTGAACACGA 62.545 57.895 0.00 0.00 0.00 4.35
4461 4472 2.746277 GGCCCGCTTGAACACGAT 60.746 61.111 0.00 0.00 0.00 3.73
4462 4473 2.750888 GGCCCGCTTGAACACGATC 61.751 63.158 0.00 0.00 0.00 3.69
4463 4474 2.750888 GCCCGCTTGAACACGATCC 61.751 63.158 0.00 0.00 0.00 3.36
4464 4475 2.106683 CCCGCTTGAACACGATCCC 61.107 63.158 0.00 0.00 0.00 3.85
4465 4476 1.079127 CCGCTTGAACACGATCCCT 60.079 57.895 0.00 0.00 0.00 4.20
4466 4477 1.361668 CCGCTTGAACACGATCCCTG 61.362 60.000 0.00 0.00 0.00 4.45
4467 4478 1.361668 CGCTTGAACACGATCCCTGG 61.362 60.000 0.00 0.00 0.00 4.45
4468 4479 0.321653 GCTTGAACACGATCCCTGGT 60.322 55.000 0.00 0.00 0.00 4.00
4469 4480 1.726853 CTTGAACACGATCCCTGGTC 58.273 55.000 0.00 0.00 0.00 4.02
4470 4481 0.037697 TTGAACACGATCCCTGGTCG 60.038 55.000 5.28 5.28 44.26 4.79
4471 4482 0.896479 TGAACACGATCCCTGGTCGA 60.896 55.000 12.94 0.00 41.40 4.20
4472 4483 0.179134 GAACACGATCCCTGGTCGAG 60.179 60.000 12.94 7.93 41.40 4.04
4473 4484 0.898789 AACACGATCCCTGGTCGAGT 60.899 55.000 12.94 8.53 42.99 4.18
4474 4485 1.139734 CACGATCCCTGGTCGAGTG 59.860 63.158 12.94 4.78 41.40 3.51
4475 4486 2.105128 CGATCCCTGGTCGAGTGC 59.895 66.667 0.74 0.00 41.40 4.40
4476 4487 2.710902 CGATCCCTGGTCGAGTGCA 61.711 63.158 0.74 0.00 41.40 4.57
4477 4488 1.596934 GATCCCTGGTCGAGTGCAA 59.403 57.895 0.00 0.00 0.00 4.08
4478 4489 0.460987 GATCCCTGGTCGAGTGCAAG 60.461 60.000 0.00 0.00 0.00 4.01
4479 4490 0.904865 ATCCCTGGTCGAGTGCAAGA 60.905 55.000 0.00 0.00 0.00 3.02
4480 4491 1.079543 CCCTGGTCGAGTGCAAGAG 60.080 63.158 0.00 0.00 0.00 2.85
4481 4492 1.668294 CCTGGTCGAGTGCAAGAGT 59.332 57.895 0.00 0.00 0.00 3.24
4482 4493 0.668706 CCTGGTCGAGTGCAAGAGTG 60.669 60.000 0.00 0.00 0.00 3.51
4483 4494 0.668706 CTGGTCGAGTGCAAGAGTGG 60.669 60.000 0.00 0.00 0.00 4.00
4484 4495 1.112916 TGGTCGAGTGCAAGAGTGGA 61.113 55.000 0.00 0.00 0.00 4.02
4485 4496 0.033504 GGTCGAGTGCAAGAGTGGAA 59.966 55.000 0.00 0.00 0.00 3.53
4486 4497 1.423395 GTCGAGTGCAAGAGTGGAAG 58.577 55.000 0.00 0.00 0.00 3.46
4487 4498 1.000163 GTCGAGTGCAAGAGTGGAAGA 60.000 52.381 0.00 0.00 0.00 2.87
4488 4499 1.686587 TCGAGTGCAAGAGTGGAAGAA 59.313 47.619 0.00 0.00 0.00 2.52
4489 4500 2.064762 CGAGTGCAAGAGTGGAAGAAG 58.935 52.381 0.00 0.00 0.00 2.85
4490 4501 2.546795 CGAGTGCAAGAGTGGAAGAAGT 60.547 50.000 0.00 0.00 0.00 3.01
4491 4502 3.063485 GAGTGCAAGAGTGGAAGAAGTC 58.937 50.000 0.00 0.00 0.00 3.01
4500 4511 1.139947 GGAAGAAGTCCTCGGCTCG 59.860 63.158 0.00 0.00 43.98 5.03
4501 4512 1.139947 GAAGAAGTCCTCGGCTCGG 59.860 63.158 0.00 0.00 0.00 4.63
4502 4513 1.596895 GAAGAAGTCCTCGGCTCGGT 61.597 60.000 0.00 0.00 0.00 4.69
4503 4514 1.878656 AAGAAGTCCTCGGCTCGGTG 61.879 60.000 0.00 0.00 0.00 4.94
4504 4515 2.600769 AAGTCCTCGGCTCGGTGT 60.601 61.111 0.00 0.00 0.00 4.16
4505 4516 2.820767 GAAGTCCTCGGCTCGGTGTG 62.821 65.000 0.00 0.00 0.00 3.82
4506 4517 4.436998 GTCCTCGGCTCGGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
4507 4518 4.988716 TCCTCGGCTCGGTGTGGT 62.989 66.667 0.00 0.00 0.00 4.16
4508 4519 4.742201 CCTCGGCTCGGTGTGGTG 62.742 72.222 0.00 0.00 0.00 4.17
4512 4523 4.314440 GGCTCGGTGTGGTGCAGA 62.314 66.667 0.00 0.00 0.00 4.26
4513 4524 2.046892 GCTCGGTGTGGTGCAGAT 60.047 61.111 0.00 0.00 0.00 2.90
4514 4525 2.393768 GCTCGGTGTGGTGCAGATG 61.394 63.158 0.00 0.00 0.00 2.90
4515 4526 1.004560 CTCGGTGTGGTGCAGATGT 60.005 57.895 0.00 0.00 0.00 3.06
4516 4527 1.005037 TCGGTGTGGTGCAGATGTC 60.005 57.895 0.00 0.00 0.00 3.06
4517 4528 2.382746 CGGTGTGGTGCAGATGTCG 61.383 63.158 0.00 0.00 0.00 4.35
4518 4529 2.680913 GGTGTGGTGCAGATGTCGC 61.681 63.158 0.00 0.00 0.00 5.19
4519 4530 1.669115 GTGTGGTGCAGATGTCGCT 60.669 57.895 0.00 0.00 0.00 4.93
4520 4531 1.374631 TGTGGTGCAGATGTCGCTC 60.375 57.895 0.00 0.00 0.00 5.03
4521 4532 1.079543 GTGGTGCAGATGTCGCTCT 60.080 57.895 0.00 0.00 0.00 4.09
4522 4533 1.079612 TGGTGCAGATGTCGCTCTG 60.080 57.895 0.00 5.44 44.51 3.35
4523 4534 1.079543 GGTGCAGATGTCGCTCTGT 60.080 57.895 10.02 0.00 43.75 3.41
4524 4535 1.357258 GGTGCAGATGTCGCTCTGTG 61.357 60.000 10.02 0.00 43.75 3.66
4525 4536 0.668706 GTGCAGATGTCGCTCTGTGT 60.669 55.000 10.02 0.00 43.75 3.72
4526 4537 0.389037 TGCAGATGTCGCTCTGTGTC 60.389 55.000 10.02 0.00 43.75 3.67
4527 4538 0.108898 GCAGATGTCGCTCTGTGTCT 60.109 55.000 10.02 0.00 43.75 3.41
4528 4539 1.626747 CAGATGTCGCTCTGTGTCTG 58.373 55.000 0.00 0.00 38.27 3.51
4529 4540 0.529833 AGATGTCGCTCTGTGTCTGG 59.470 55.000 0.00 0.00 0.00 3.86
4530 4541 1.079543 ATGTCGCTCTGTGTCTGGC 60.080 57.895 0.00 0.00 0.00 4.85
4531 4542 2.433318 GTCGCTCTGTGTCTGGCC 60.433 66.667 0.00 0.00 0.00 5.36
4532 4543 3.695606 TCGCTCTGTGTCTGGCCC 61.696 66.667 0.00 0.00 0.00 5.80
4534 4545 3.695606 GCTCTGTGTCTGGCCCGA 61.696 66.667 0.00 0.00 0.00 5.14
4535 4546 2.575993 CTCTGTGTCTGGCCCGAG 59.424 66.667 0.00 0.00 0.00 4.63
4536 4547 2.203640 TCTGTGTCTGGCCCGAGT 60.204 61.111 0.00 0.00 0.00 4.18
4537 4548 2.219325 CTCTGTGTCTGGCCCGAGTC 62.219 65.000 0.00 0.00 0.00 3.36
4538 4549 3.302347 CTGTGTCTGGCCCGAGTCC 62.302 68.421 0.00 0.00 0.00 3.85
4539 4550 3.311110 GTGTCTGGCCCGAGTCCA 61.311 66.667 0.00 0.00 0.00 4.02
4540 4551 3.311110 TGTCTGGCCCGAGTCCAC 61.311 66.667 0.00 0.00 0.00 4.02
4541 4552 2.997897 GTCTGGCCCGAGTCCACT 60.998 66.667 0.00 0.00 0.00 4.00
4542 4553 2.997315 TCTGGCCCGAGTCCACTG 60.997 66.667 0.00 0.00 0.00 3.66
4543 4554 4.767255 CTGGCCCGAGTCCACTGC 62.767 72.222 0.00 0.00 0.00 4.40
4545 4556 4.329545 GGCCCGAGTCCACTGCAA 62.330 66.667 0.00 0.00 0.00 4.08
4546 4557 2.281484 GCCCGAGTCCACTGCAAA 60.281 61.111 0.00 0.00 0.00 3.68
4547 4558 2.328099 GCCCGAGTCCACTGCAAAG 61.328 63.158 0.00 0.00 0.00 2.77
4548 4559 1.371183 CCCGAGTCCACTGCAAAGA 59.629 57.895 0.00 0.00 0.00 2.52
4549 4560 0.036010 CCCGAGTCCACTGCAAAGAT 60.036 55.000 0.00 0.00 0.00 2.40
4550 4561 1.081892 CCGAGTCCACTGCAAAGATG 58.918 55.000 0.00 0.00 0.00 2.90
4562 4573 2.662006 CAAAGATGCACGAGAGGAGA 57.338 50.000 0.00 0.00 0.00 3.71
4563 4574 2.964740 CAAAGATGCACGAGAGGAGAA 58.035 47.619 0.00 0.00 0.00 2.87
4564 4575 2.928757 CAAAGATGCACGAGAGGAGAAG 59.071 50.000 0.00 0.00 0.00 2.85
4565 4576 0.459489 AGATGCACGAGAGGAGAAGC 59.541 55.000 0.00 0.00 0.00 3.86
4566 4577 0.459489 GATGCACGAGAGGAGAAGCT 59.541 55.000 0.00 0.00 0.00 3.74
4567 4578 0.175302 ATGCACGAGAGGAGAAGCTG 59.825 55.000 0.00 0.00 0.00 4.24
4568 4579 1.153667 GCACGAGAGGAGAAGCTGG 60.154 63.158 0.00 0.00 0.00 4.85
4569 4580 1.153667 CACGAGAGGAGAAGCTGGC 60.154 63.158 0.00 0.00 0.00 4.85
4570 4581 2.103934 CGAGAGGAGAAGCTGGCG 59.896 66.667 0.00 0.00 0.00 5.69
4571 4582 2.498726 GAGAGGAGAAGCTGGCGG 59.501 66.667 0.00 0.00 0.00 6.13
4572 4583 3.731653 GAGAGGAGAAGCTGGCGGC 62.732 68.421 11.19 11.19 42.19 6.53
4573 4584 4.847444 GAGGAGAAGCTGGCGGCC 62.847 72.222 16.15 13.32 43.05 6.13
4576 4587 4.416738 GAGAAGCTGGCGGCCCTT 62.417 66.667 17.97 13.43 43.05 3.95
4577 4588 4.416738 AGAAGCTGGCGGCCCTTC 62.417 66.667 22.83 22.83 43.05 3.46
4588 4599 4.759205 GCCCTTCGGGTGGCCAAT 62.759 66.667 7.24 0.00 46.51 3.16
4589 4600 3.003230 CCCTTCGGGTGGCCAATA 58.997 61.111 7.24 0.00 38.25 1.90
4590 4601 1.453197 CCCTTCGGGTGGCCAATAC 60.453 63.158 7.24 0.00 38.25 1.89
4591 4602 1.453197 CCTTCGGGTGGCCAATACC 60.453 63.158 7.24 9.96 37.48 2.73
4592 4603 1.301623 CTTCGGGTGGCCAATACCA 59.698 57.895 7.24 0.00 40.03 3.25
4593 4604 0.322997 CTTCGGGTGGCCAATACCAA 60.323 55.000 7.24 6.99 42.70 3.67
4594 4605 0.322997 TTCGGGTGGCCAATACCAAG 60.323 55.000 7.24 2.95 42.70 3.61
4595 4606 1.202099 TCGGGTGGCCAATACCAAGA 61.202 55.000 7.24 5.57 42.70 3.02
4596 4607 0.322997 CGGGTGGCCAATACCAAGAA 60.323 55.000 7.24 0.00 42.70 2.52
4597 4608 1.474330 GGGTGGCCAATACCAAGAAG 58.526 55.000 7.24 0.00 42.70 2.85
4598 4609 0.817654 GGTGGCCAATACCAAGAAGC 59.182 55.000 7.24 0.00 42.70 3.86
4599 4610 1.544724 GTGGCCAATACCAAGAAGCA 58.455 50.000 7.24 0.00 42.70 3.91
4600 4611 1.202348 GTGGCCAATACCAAGAAGCAC 59.798 52.381 7.24 0.00 42.70 4.40
4601 4612 0.451783 GGCCAATACCAAGAAGCACG 59.548 55.000 0.00 0.00 0.00 5.34
4602 4613 1.448985 GCCAATACCAAGAAGCACGA 58.551 50.000 0.00 0.00 0.00 4.35
4603 4614 1.130561 GCCAATACCAAGAAGCACGAC 59.869 52.381 0.00 0.00 0.00 4.34
4604 4615 2.699954 CCAATACCAAGAAGCACGACT 58.300 47.619 0.00 0.00 0.00 4.18
4605 4616 3.074412 CCAATACCAAGAAGCACGACTT 58.926 45.455 0.00 0.00 42.98 3.01
4613 4624 2.442056 AAGCACGACTTCAGGTCCT 58.558 52.632 0.00 0.00 41.64 3.85
4614 4625 0.759346 AAGCACGACTTCAGGTCCTT 59.241 50.000 0.00 0.00 41.64 3.36
4615 4626 0.759346 AGCACGACTTCAGGTCCTTT 59.241 50.000 0.00 0.00 41.64 3.11
4616 4627 1.968493 AGCACGACTTCAGGTCCTTTA 59.032 47.619 0.00 0.00 41.64 1.85
4617 4628 2.567615 AGCACGACTTCAGGTCCTTTAT 59.432 45.455 0.00 0.00 41.64 1.40
4618 4629 2.673368 GCACGACTTCAGGTCCTTTATG 59.327 50.000 0.00 0.00 41.64 1.90
4619 4630 3.262420 CACGACTTCAGGTCCTTTATGG 58.738 50.000 0.00 0.00 41.64 2.74
4620 4631 3.056107 CACGACTTCAGGTCCTTTATGGA 60.056 47.826 0.00 0.00 43.86 3.41
4632 4643 4.589908 TCCTTTATGGAGACTTTCCTTGC 58.410 43.478 0.00 0.00 46.92 4.01
4633 4644 4.042809 TCCTTTATGGAGACTTTCCTTGCA 59.957 41.667 0.00 0.00 46.92 4.08
4634 4645 4.397417 CCTTTATGGAGACTTTCCTTGCAG 59.603 45.833 0.00 0.00 46.92 4.41
4635 4646 1.831580 ATGGAGACTTTCCTTGCAGC 58.168 50.000 0.00 0.00 46.92 5.25
4636 4647 0.767375 TGGAGACTTTCCTTGCAGCT 59.233 50.000 0.00 0.00 46.92 4.24
4637 4648 1.163554 GGAGACTTTCCTTGCAGCTG 58.836 55.000 10.11 10.11 43.16 4.24
4638 4649 0.520847 GAGACTTTCCTTGCAGCTGC 59.479 55.000 31.89 31.89 42.50 5.25
4639 4650 0.892814 AGACTTTCCTTGCAGCTGCC 60.893 55.000 34.64 17.82 41.18 4.85
4640 4651 1.152694 ACTTTCCTTGCAGCTGCCA 60.153 52.632 34.64 24.06 41.18 4.92
4641 4652 1.288127 CTTTCCTTGCAGCTGCCAC 59.712 57.895 34.64 9.66 41.18 5.01
4642 4653 1.152694 TTTCCTTGCAGCTGCCACT 60.153 52.632 34.64 0.00 41.18 4.00
4643 4654 1.174712 TTTCCTTGCAGCTGCCACTC 61.175 55.000 34.64 8.86 41.18 3.51
4644 4655 3.429141 CCTTGCAGCTGCCACTCG 61.429 66.667 34.64 17.58 41.18 4.18
4645 4656 3.429141 CTTGCAGCTGCCACTCGG 61.429 66.667 34.64 14.46 41.18 4.63
4646 4657 3.889134 CTTGCAGCTGCCACTCGGA 62.889 63.158 34.64 12.62 41.18 4.55
4647 4658 3.258228 TTGCAGCTGCCACTCGGAT 62.258 57.895 34.64 0.00 41.18 4.18
4648 4659 2.894387 GCAGCTGCCACTCGGATC 60.894 66.667 28.76 0.00 34.31 3.36
4649 4660 2.584418 CAGCTGCCACTCGGATCG 60.584 66.667 0.00 0.00 0.00 3.69
4650 4661 4.521062 AGCTGCCACTCGGATCGC 62.521 66.667 0.00 0.00 0.00 4.58
4661 4672 3.319904 GGATCGCCGACGGAATTG 58.680 61.111 20.50 3.65 40.63 2.32
4662 4673 1.227147 GGATCGCCGACGGAATTGA 60.227 57.895 20.50 9.53 40.63 2.57
4663 4674 1.488261 GGATCGCCGACGGAATTGAC 61.488 60.000 20.50 2.94 40.63 3.18
4664 4675 1.488261 GATCGCCGACGGAATTGACC 61.488 60.000 20.50 0.00 40.63 4.02
4665 4676 1.956629 ATCGCCGACGGAATTGACCT 61.957 55.000 20.50 0.00 40.63 3.85
4666 4677 1.740296 CGCCGACGGAATTGACCTT 60.740 57.895 20.50 0.00 34.97 3.50
4667 4678 1.794222 GCCGACGGAATTGACCTTG 59.206 57.895 20.50 0.00 0.00 3.61
4668 4679 0.672401 GCCGACGGAATTGACCTTGA 60.672 55.000 20.50 0.00 0.00 3.02
4669 4680 2.012051 GCCGACGGAATTGACCTTGAT 61.012 52.381 20.50 0.00 0.00 2.57
4670 4681 1.665679 CCGACGGAATTGACCTTGATG 59.334 52.381 8.64 0.00 0.00 3.07
4671 4682 2.616960 CGACGGAATTGACCTTGATGA 58.383 47.619 0.00 0.00 0.00 2.92
4672 4683 3.000041 CGACGGAATTGACCTTGATGAA 59.000 45.455 0.00 0.00 0.00 2.57
4673 4684 3.623060 CGACGGAATTGACCTTGATGAAT 59.377 43.478 0.00 0.00 0.00 2.57
4674 4685 4.094887 CGACGGAATTGACCTTGATGAATT 59.905 41.667 0.00 0.00 0.00 2.17
4675 4686 5.567138 ACGGAATTGACCTTGATGAATTC 57.433 39.130 0.00 0.00 35.13 2.17
4676 4687 4.094887 ACGGAATTGACCTTGATGAATTCG 59.905 41.667 0.04 0.00 36.21 3.34
4677 4688 4.094887 CGGAATTGACCTTGATGAATTCGT 59.905 41.667 0.00 0.00 36.21 3.85
4678 4689 5.391950 CGGAATTGACCTTGATGAATTCGTT 60.392 40.000 0.77 0.00 36.21 3.85
4679 4690 5.801947 GGAATTGACCTTGATGAATTCGTTG 59.198 40.000 0.77 0.00 36.21 4.10
4680 4691 3.829886 TGACCTTGATGAATTCGTTGC 57.170 42.857 0.77 0.00 0.00 4.17
4681 4692 3.145286 TGACCTTGATGAATTCGTTGCA 58.855 40.909 0.77 0.00 0.00 4.08
4682 4693 3.058293 TGACCTTGATGAATTCGTTGCAC 60.058 43.478 0.77 0.00 0.00 4.57
4683 4694 2.228822 ACCTTGATGAATTCGTTGCACC 59.771 45.455 0.77 0.00 0.00 5.01
4684 4695 2.489329 CCTTGATGAATTCGTTGCACCT 59.511 45.455 0.77 0.00 0.00 4.00
4685 4696 3.057315 CCTTGATGAATTCGTTGCACCTT 60.057 43.478 0.77 0.00 0.00 3.50
4686 4697 3.829886 TGATGAATTCGTTGCACCTTC 57.170 42.857 0.77 0.00 0.00 3.46
4687 4698 2.487762 TGATGAATTCGTTGCACCTTCC 59.512 45.455 0.77 0.00 0.00 3.46
4688 4699 1.974265 TGAATTCGTTGCACCTTCCA 58.026 45.000 0.04 0.00 0.00 3.53
4689 4700 1.879380 TGAATTCGTTGCACCTTCCAG 59.121 47.619 0.04 0.00 0.00 3.86
4690 4701 0.598065 AATTCGTTGCACCTTCCAGC 59.402 50.000 0.00 0.00 0.00 4.85
4691 4702 1.244019 ATTCGTTGCACCTTCCAGCC 61.244 55.000 0.00 0.00 0.00 4.85
4692 4703 3.365265 CGTTGCACCTTCCAGCCC 61.365 66.667 0.00 0.00 0.00 5.19
4693 4704 2.116125 GTTGCACCTTCCAGCCCT 59.884 61.111 0.00 0.00 0.00 5.19
4694 4705 1.973812 GTTGCACCTTCCAGCCCTC 60.974 63.158 0.00 0.00 0.00 4.30
4695 4706 3.210012 TTGCACCTTCCAGCCCTCC 62.210 63.158 0.00 0.00 0.00 4.30
4696 4707 4.785453 GCACCTTCCAGCCCTCCG 62.785 72.222 0.00 0.00 0.00 4.63
4697 4708 4.785453 CACCTTCCAGCCCTCCGC 62.785 72.222 0.00 0.00 37.98 5.54
4699 4710 4.479993 CCTTCCAGCCCTCCGCAG 62.480 72.222 0.00 0.00 41.38 5.18
4729 4740 3.477210 AAAACTTCTTCTGGCTCGACT 57.523 42.857 0.00 0.00 0.00 4.18
4730 4741 2.734276 AACTTCTTCTGGCTCGACTC 57.266 50.000 0.00 0.00 0.00 3.36
4731 4742 1.917872 ACTTCTTCTGGCTCGACTCT 58.082 50.000 0.00 0.00 0.00 3.24
4732 4743 2.243810 ACTTCTTCTGGCTCGACTCTT 58.756 47.619 0.00 0.00 0.00 2.85
4733 4744 2.630580 ACTTCTTCTGGCTCGACTCTTT 59.369 45.455 0.00 0.00 0.00 2.52
4734 4745 3.827302 ACTTCTTCTGGCTCGACTCTTTA 59.173 43.478 0.00 0.00 0.00 1.85
4735 4746 4.281182 ACTTCTTCTGGCTCGACTCTTTAA 59.719 41.667 0.00 0.00 0.00 1.52
4736 4747 4.866508 TCTTCTGGCTCGACTCTTTAAA 57.133 40.909 0.00 0.00 0.00 1.52
4737 4748 5.407407 TCTTCTGGCTCGACTCTTTAAAT 57.593 39.130 0.00 0.00 0.00 1.40
4738 4749 5.794894 TCTTCTGGCTCGACTCTTTAAATT 58.205 37.500 0.00 0.00 0.00 1.82
4739 4750 6.231211 TCTTCTGGCTCGACTCTTTAAATTT 58.769 36.000 0.00 0.00 0.00 1.82
4740 4751 5.862924 TCTGGCTCGACTCTTTAAATTTG 57.137 39.130 0.00 0.00 0.00 2.32
4741 4752 4.154195 TCTGGCTCGACTCTTTAAATTTGC 59.846 41.667 0.00 0.00 0.00 3.68
4742 4753 3.190535 TGGCTCGACTCTTTAAATTTGCC 59.809 43.478 0.00 1.47 37.38 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.371558 GAGGTGCACGAAGGGAAGT 59.628 57.895 11.45 0.00 0.00 3.01
68 69 2.903357 CCATGGTCTCCGGTGAGG 59.097 66.667 6.43 0.55 39.23 3.86
614 615 4.225942 TGCTATTGTTCCTCACCTGAATCT 59.774 41.667 0.00 0.00 0.00 2.40
1142 1145 3.138304 CAAACAAGGATCAGTCGACCAA 58.862 45.455 13.01 0.08 0.00 3.67
1421 1424 0.182775 AAGGGTCGTGGACAAGCTTT 59.817 50.000 0.00 0.00 33.68 3.51
1569 1572 1.610624 GGACACCTTCATCTTCGGCAA 60.611 52.381 0.00 0.00 0.00 4.52
3152 3162 6.116126 ACCTTCGAGCATAAGAAATAGCTTT 58.884 36.000 0.00 0.00 37.48 3.51
3158 3168 6.415573 AGGTTTACCTTCGAGCATAAGAAAT 58.584 36.000 0.00 0.00 46.09 2.17
3924 3934 0.250901 CCTAAGCACAGGCACCTTGT 60.251 55.000 0.00 0.00 44.61 3.16
3995 4005 7.794041 TCGCCTAAGTTATAAAAATCCTACCA 58.206 34.615 0.00 0.00 0.00 3.25
4290 4301 1.200839 GCAACTTCGTCGTTCACCG 59.799 57.895 0.00 0.00 38.13 4.94
4291 4302 1.155424 TGGCAACTTCGTCGTTCACC 61.155 55.000 0.00 0.00 37.61 4.02
4293 4304 0.865111 CATGGCAACTTCGTCGTTCA 59.135 50.000 0.00 0.00 37.61 3.18
4294 4305 0.165944 CCATGGCAACTTCGTCGTTC 59.834 55.000 0.00 0.00 37.61 3.95
4296 4307 0.036388 ATCCATGGCAACTTCGTCGT 60.036 50.000 6.96 0.00 37.61 4.34
4297 4308 0.374758 CATCCATGGCAACTTCGTCG 59.625 55.000 6.96 0.00 37.61 5.12
4298 4309 1.398390 GACATCCATGGCAACTTCGTC 59.602 52.381 6.96 1.84 35.34 4.20
4299 4310 1.003580 AGACATCCATGGCAACTTCGT 59.996 47.619 6.96 0.00 38.64 3.85
4300 4311 1.742761 AGACATCCATGGCAACTTCG 58.257 50.000 6.96 0.00 38.64 3.79
4301 4312 3.772060 GAAGACATCCATGGCAACTTC 57.228 47.619 6.96 14.37 38.64 3.01
4324 4335 0.032678 CTGCAACACGAGACTCCAGT 59.967 55.000 0.00 0.00 0.00 4.00
4328 4339 0.598680 ACAGCTGCAACACGAGACTC 60.599 55.000 15.27 0.00 0.00 3.36
4331 4342 1.661509 CGACAGCTGCAACACGAGA 60.662 57.895 15.27 0.00 0.00 4.04
4332 4343 1.951130 ACGACAGCTGCAACACGAG 60.951 57.895 15.27 0.00 0.00 4.18
4333 4344 2.106131 ACGACAGCTGCAACACGA 59.894 55.556 15.27 0.00 0.00 4.35
4334 4345 2.246397 CACGACAGCTGCAACACG 59.754 61.111 15.27 13.98 0.00 4.49
4336 4347 1.887242 GTCCACGACAGCTGCAACA 60.887 57.895 15.27 0.00 32.09 3.33
4337 4348 0.319555 TAGTCCACGACAGCTGCAAC 60.320 55.000 15.27 4.81 34.60 4.17
4339 4350 0.173481 GATAGTCCACGACAGCTGCA 59.827 55.000 15.27 0.00 34.60 4.41
4340 4351 0.457851 AGATAGTCCACGACAGCTGC 59.542 55.000 15.27 5.81 34.60 5.25
4341 4352 1.268285 CGAGATAGTCCACGACAGCTG 60.268 57.143 13.48 13.48 34.60 4.24
4344 4355 0.733150 TGCGAGATAGTCCACGACAG 59.267 55.000 0.00 0.00 34.60 3.51
4345 4356 1.132453 CTTGCGAGATAGTCCACGACA 59.868 52.381 0.00 0.00 34.60 4.35
4346 4357 1.534175 CCTTGCGAGATAGTCCACGAC 60.534 57.143 1.22 0.00 0.00 4.34
4347 4358 0.738975 CCTTGCGAGATAGTCCACGA 59.261 55.000 1.22 0.00 0.00 4.35
4348 4359 0.872021 GCCTTGCGAGATAGTCCACG 60.872 60.000 1.22 0.00 0.00 4.94
4349 4360 0.461961 AGCCTTGCGAGATAGTCCAC 59.538 55.000 1.22 0.00 0.00 4.02
4350 4361 0.461548 CAGCCTTGCGAGATAGTCCA 59.538 55.000 1.22 0.00 0.00 4.02
4351 4362 0.747255 TCAGCCTTGCGAGATAGTCC 59.253 55.000 1.22 0.00 0.00 3.85
4352 4363 2.468831 CTTCAGCCTTGCGAGATAGTC 58.531 52.381 1.22 0.00 0.00 2.59
4353 4364 1.137872 CCTTCAGCCTTGCGAGATAGT 59.862 52.381 1.22 0.00 0.00 2.12
4354 4365 1.863267 CCTTCAGCCTTGCGAGATAG 58.137 55.000 1.22 0.00 0.00 2.08
4355 4366 0.179073 GCCTTCAGCCTTGCGAGATA 60.179 55.000 1.22 0.00 34.35 1.98
4356 4367 1.451028 GCCTTCAGCCTTGCGAGAT 60.451 57.895 1.22 0.00 34.35 2.75
4357 4368 2.046892 GCCTTCAGCCTTGCGAGA 60.047 61.111 1.22 0.00 34.35 4.04
4366 4377 3.512516 GATGTGGCGGCCTTCAGC 61.513 66.667 21.46 17.35 42.60 4.26
4367 4378 1.817099 GAGATGTGGCGGCCTTCAG 60.817 63.158 21.46 0.00 0.00 3.02
4368 4379 2.268920 GAGATGTGGCGGCCTTCA 59.731 61.111 21.46 18.66 0.00 3.02
4369 4380 2.892425 CGAGATGTGGCGGCCTTC 60.892 66.667 21.46 13.97 0.00 3.46
4373 4384 3.643978 GATGCGAGATGTGGCGGC 61.644 66.667 0.00 0.00 0.00 6.53
4374 4385 3.333189 CGATGCGAGATGTGGCGG 61.333 66.667 0.00 0.00 0.00 6.13
4375 4386 2.278792 TCGATGCGAGATGTGGCG 60.279 61.111 0.00 0.00 0.00 5.69
4376 4387 1.211818 GAGTCGATGCGAGATGTGGC 61.212 60.000 0.00 0.00 36.23 5.01
4377 4388 0.932123 CGAGTCGATGCGAGATGTGG 60.932 60.000 6.73 0.00 36.23 4.17
4378 4389 0.028110 TCGAGTCGATGCGAGATGTG 59.972 55.000 12.09 0.00 36.23 3.21
4379 4390 0.028242 GTCGAGTCGATGCGAGATGT 59.972 55.000 19.75 0.00 38.42 3.06
4380 4391 0.989315 CGTCGAGTCGATGCGAGATG 60.989 60.000 20.95 0.00 38.42 2.90
4381 4392 1.277142 CGTCGAGTCGATGCGAGAT 59.723 57.895 20.95 0.00 38.42 2.75
4382 4393 2.701606 CGTCGAGTCGATGCGAGA 59.298 61.111 20.95 0.00 38.42 4.04
4387 4398 1.297967 CCAGAGCGTCGAGTCGATG 60.298 63.158 26.79 26.79 44.52 3.84
4388 4399 3.102985 CCAGAGCGTCGAGTCGAT 58.897 61.111 19.75 2.03 38.42 3.59
4389 4400 3.800863 GCCAGAGCGTCGAGTCGA 61.801 66.667 12.09 12.09 0.00 4.20
4390 4401 4.838486 GGCCAGAGCGTCGAGTCG 62.838 72.222 6.09 6.09 41.24 4.18
4391 4402 3.444805 AGGCCAGAGCGTCGAGTC 61.445 66.667 5.01 0.00 41.24 3.36
4392 4403 3.753434 CAGGCCAGAGCGTCGAGT 61.753 66.667 5.01 0.00 41.24 4.18
4393 4404 3.408501 CTCAGGCCAGAGCGTCGAG 62.409 68.421 12.76 0.00 41.24 4.04
4394 4405 3.443925 CTCAGGCCAGAGCGTCGA 61.444 66.667 12.76 0.00 41.24 4.20
4395 4406 4.504916 CCTCAGGCCAGAGCGTCG 62.505 72.222 19.39 2.25 41.24 5.12
4396 4407 3.071206 TCCTCAGGCCAGAGCGTC 61.071 66.667 19.39 0.00 41.24 5.19
4397 4408 3.073735 CTCCTCAGGCCAGAGCGT 61.074 66.667 19.39 0.00 41.24 5.07
4398 4409 2.757508 TCTCCTCAGGCCAGAGCG 60.758 66.667 19.39 12.56 41.24 5.03
4399 4410 1.986757 TGTCTCCTCAGGCCAGAGC 60.987 63.158 19.39 6.60 34.26 4.09
4400 4411 0.614415 AGTGTCTCCTCAGGCCAGAG 60.614 60.000 17.97 17.97 35.39 3.35
4401 4412 0.178921 AAGTGTCTCCTCAGGCCAGA 60.179 55.000 5.01 0.00 0.00 3.86
4402 4413 0.248843 GAAGTGTCTCCTCAGGCCAG 59.751 60.000 5.01 0.00 0.00 4.85
4403 4414 0.471780 TGAAGTGTCTCCTCAGGCCA 60.472 55.000 5.01 0.00 0.00 5.36
4404 4415 0.248843 CTGAAGTGTCTCCTCAGGCC 59.751 60.000 0.00 0.00 0.00 5.19
4405 4416 1.261480 TCTGAAGTGTCTCCTCAGGC 58.739 55.000 0.00 0.00 0.00 4.85
4406 4417 3.513119 TCATTCTGAAGTGTCTCCTCAGG 59.487 47.826 0.00 0.00 0.00 3.86
4407 4418 4.493547 GTCATTCTGAAGTGTCTCCTCAG 58.506 47.826 0.00 0.00 0.00 3.35
4408 4419 3.259374 GGTCATTCTGAAGTGTCTCCTCA 59.741 47.826 0.00 0.00 0.00 3.86
4409 4420 3.513515 AGGTCATTCTGAAGTGTCTCCTC 59.486 47.826 0.00 0.00 0.00 3.71
4410 4421 3.515562 AGGTCATTCTGAAGTGTCTCCT 58.484 45.455 0.00 3.44 0.00 3.69
4411 4422 3.971245 AGGTCATTCTGAAGTGTCTCC 57.029 47.619 0.00 1.65 0.00 3.71
4412 4423 4.887748 TCAAGGTCATTCTGAAGTGTCTC 58.112 43.478 0.00 0.00 0.00 3.36
4413 4424 4.346418 ACTCAAGGTCATTCTGAAGTGTCT 59.654 41.667 0.00 0.00 0.00 3.41
4414 4425 4.636249 ACTCAAGGTCATTCTGAAGTGTC 58.364 43.478 0.00 0.00 0.00 3.67
4415 4426 4.636249 GACTCAAGGTCATTCTGAAGTGT 58.364 43.478 0.00 0.00 43.94 3.55
4416 4427 3.677121 CGACTCAAGGTCATTCTGAAGTG 59.323 47.826 0.00 0.00 44.70 3.16
4417 4428 3.862642 GCGACTCAAGGTCATTCTGAAGT 60.863 47.826 0.00 0.00 44.70 3.01
4418 4429 2.670414 GCGACTCAAGGTCATTCTGAAG 59.330 50.000 0.00 0.00 44.70 3.02
4419 4430 2.300152 AGCGACTCAAGGTCATTCTGAA 59.700 45.455 0.00 0.00 44.70 3.02
4420 4431 1.895798 AGCGACTCAAGGTCATTCTGA 59.104 47.619 0.00 0.00 44.70 3.27
4421 4432 1.998315 CAGCGACTCAAGGTCATTCTG 59.002 52.381 0.00 0.00 44.70 3.02
4422 4433 1.895798 TCAGCGACTCAAGGTCATTCT 59.104 47.619 0.00 0.00 44.70 2.40
4423 4434 2.370281 TCAGCGACTCAAGGTCATTC 57.630 50.000 0.00 0.00 44.70 2.67
4424 4435 2.625737 CATCAGCGACTCAAGGTCATT 58.374 47.619 0.00 0.00 44.70 2.57
4425 4436 1.134580 CCATCAGCGACTCAAGGTCAT 60.135 52.381 0.00 0.00 44.70 3.06
4426 4437 0.247460 CCATCAGCGACTCAAGGTCA 59.753 55.000 0.00 0.00 44.70 4.02
4427 4438 1.086634 GCCATCAGCGACTCAAGGTC 61.087 60.000 0.00 0.00 41.28 3.85
4428 4439 1.078848 GCCATCAGCGACTCAAGGT 60.079 57.895 0.00 0.00 0.00 3.50
4429 4440 1.817099 GGCCATCAGCGACTCAAGG 60.817 63.158 0.00 0.00 45.17 3.61
4430 4441 1.817099 GGGCCATCAGCGACTCAAG 60.817 63.158 4.39 0.00 45.17 3.02
4431 4442 2.268920 GGGCCATCAGCGACTCAA 59.731 61.111 4.39 0.00 45.17 3.02
4432 4443 4.147449 CGGGCCATCAGCGACTCA 62.147 66.667 4.39 0.00 45.17 3.41
4438 4449 2.751436 TTCAAGCGGGCCATCAGC 60.751 61.111 4.39 4.10 42.60 4.26
4439 4450 1.675310 TGTTCAAGCGGGCCATCAG 60.675 57.895 4.39 0.00 0.00 2.90
4440 4451 1.971167 GTGTTCAAGCGGGCCATCA 60.971 57.895 4.39 0.00 0.00 3.07
4441 4452 2.877691 GTGTTCAAGCGGGCCATC 59.122 61.111 4.39 0.00 0.00 3.51
4442 4453 2.819984 ATCGTGTTCAAGCGGGCCAT 62.820 55.000 4.39 0.00 0.00 4.40
4443 4454 3.545124 ATCGTGTTCAAGCGGGCCA 62.545 57.895 4.39 0.00 0.00 5.36
4444 4455 2.746277 ATCGTGTTCAAGCGGGCC 60.746 61.111 0.00 0.00 0.00 5.80
4445 4456 2.750888 GGATCGTGTTCAAGCGGGC 61.751 63.158 0.00 0.00 0.00 6.13
4446 4457 2.106683 GGGATCGTGTTCAAGCGGG 61.107 63.158 0.00 0.00 0.00 6.13
4447 4458 1.079127 AGGGATCGTGTTCAAGCGG 60.079 57.895 0.00 0.00 0.00 5.52
4448 4459 1.361668 CCAGGGATCGTGTTCAAGCG 61.362 60.000 0.00 0.00 0.00 4.68
4449 4460 0.321653 ACCAGGGATCGTGTTCAAGC 60.322 55.000 0.00 0.00 0.00 4.01
4450 4461 1.726853 GACCAGGGATCGTGTTCAAG 58.273 55.000 0.00 0.00 0.00 3.02
4451 4462 0.037697 CGACCAGGGATCGTGTTCAA 60.038 55.000 0.00 0.00 34.84 2.69
4452 4463 0.896479 TCGACCAGGGATCGTGTTCA 60.896 55.000 0.00 0.00 40.50 3.18
4453 4464 0.179134 CTCGACCAGGGATCGTGTTC 60.179 60.000 0.00 0.00 40.50 3.18
4454 4465 0.898789 ACTCGACCAGGGATCGTGTT 60.899 55.000 2.21 0.00 41.94 3.32
4455 4466 1.304217 ACTCGACCAGGGATCGTGT 60.304 57.895 2.21 2.21 40.40 4.49
4456 4467 1.139734 CACTCGACCAGGGATCGTG 59.860 63.158 0.00 0.45 40.50 4.35
4457 4468 2.711922 GCACTCGACCAGGGATCGT 61.712 63.158 0.00 0.00 40.50 3.73
4458 4469 2.105128 GCACTCGACCAGGGATCG 59.895 66.667 0.00 0.00 41.00 3.69
4459 4470 0.460987 CTTGCACTCGACCAGGGATC 60.461 60.000 0.00 0.00 0.00 3.36
4460 4471 0.904865 TCTTGCACTCGACCAGGGAT 60.905 55.000 0.00 0.00 0.00 3.85
4461 4472 1.533033 TCTTGCACTCGACCAGGGA 60.533 57.895 0.00 0.00 0.00 4.20
4462 4473 1.079543 CTCTTGCACTCGACCAGGG 60.080 63.158 0.00 0.00 0.00 4.45
4463 4474 0.668706 CACTCTTGCACTCGACCAGG 60.669 60.000 0.00 0.00 0.00 4.45
4464 4475 0.668706 CCACTCTTGCACTCGACCAG 60.669 60.000 0.00 0.00 0.00 4.00
4465 4476 1.112916 TCCACTCTTGCACTCGACCA 61.113 55.000 0.00 0.00 0.00 4.02
4466 4477 0.033504 TTCCACTCTTGCACTCGACC 59.966 55.000 0.00 0.00 0.00 4.79
4467 4478 1.000163 TCTTCCACTCTTGCACTCGAC 60.000 52.381 0.00 0.00 0.00 4.20
4468 4479 1.328279 TCTTCCACTCTTGCACTCGA 58.672 50.000 0.00 0.00 0.00 4.04
4469 4480 2.064762 CTTCTTCCACTCTTGCACTCG 58.935 52.381 0.00 0.00 0.00 4.18
4470 4481 3.063485 GACTTCTTCCACTCTTGCACTC 58.937 50.000 0.00 0.00 0.00 3.51
4471 4482 2.224402 GGACTTCTTCCACTCTTGCACT 60.224 50.000 0.00 0.00 45.10 4.40
4472 4483 2.147150 GGACTTCTTCCACTCTTGCAC 58.853 52.381 0.00 0.00 45.10 4.57
4473 4484 2.550830 GGACTTCTTCCACTCTTGCA 57.449 50.000 0.00 0.00 45.10 4.08
4482 4493 1.139947 CGAGCCGAGGACTTCTTCC 59.860 63.158 0.00 0.00 46.33 3.46
4483 4494 1.139947 CCGAGCCGAGGACTTCTTC 59.860 63.158 0.00 0.00 0.00 2.87
4484 4495 1.606889 ACCGAGCCGAGGACTTCTT 60.607 57.895 0.00 0.00 0.00 2.52
4485 4496 2.035940 ACCGAGCCGAGGACTTCT 59.964 61.111 0.00 0.00 0.00 2.85
4486 4497 2.182030 CACCGAGCCGAGGACTTC 59.818 66.667 0.00 0.00 0.00 3.01
4487 4498 2.600769 ACACCGAGCCGAGGACTT 60.601 61.111 0.00 0.00 0.00 3.01
4488 4499 3.374402 CACACCGAGCCGAGGACT 61.374 66.667 0.00 0.00 0.00 3.85
4489 4500 4.436998 CCACACCGAGCCGAGGAC 62.437 72.222 0.00 0.00 0.00 3.85
4490 4501 4.988716 ACCACACCGAGCCGAGGA 62.989 66.667 0.00 0.00 0.00 3.71
4491 4502 4.742201 CACCACACCGAGCCGAGG 62.742 72.222 0.00 0.00 0.00 4.63
4495 4506 3.612247 ATCTGCACCACACCGAGCC 62.612 63.158 0.00 0.00 0.00 4.70
4496 4507 2.046892 ATCTGCACCACACCGAGC 60.047 61.111 0.00 0.00 0.00 5.03
4497 4508 1.004560 ACATCTGCACCACACCGAG 60.005 57.895 0.00 0.00 0.00 4.63
4498 4509 1.005037 GACATCTGCACCACACCGA 60.005 57.895 0.00 0.00 0.00 4.69
4499 4510 2.382746 CGACATCTGCACCACACCG 61.383 63.158 0.00 0.00 0.00 4.94
4500 4511 2.680913 GCGACATCTGCACCACACC 61.681 63.158 0.00 0.00 0.00 4.16
4501 4512 1.630244 GAGCGACATCTGCACCACAC 61.630 60.000 0.00 0.00 33.85 3.82
4502 4513 1.374631 GAGCGACATCTGCACCACA 60.375 57.895 0.00 0.00 33.85 4.17
4503 4514 1.079543 AGAGCGACATCTGCACCAC 60.080 57.895 0.00 0.00 33.85 4.16
4504 4515 1.079612 CAGAGCGACATCTGCACCA 60.080 57.895 0.00 0.00 40.26 4.17
4505 4516 3.791539 CAGAGCGACATCTGCACC 58.208 61.111 0.00 0.00 40.26 5.01
4510 4521 0.529833 CCAGACACAGAGCGACATCT 59.470 55.000 0.00 0.00 0.00 2.90
4511 4522 1.080995 GCCAGACACAGAGCGACATC 61.081 60.000 0.00 0.00 0.00 3.06
4512 4523 1.079543 GCCAGACACAGAGCGACAT 60.080 57.895 0.00 0.00 0.00 3.06
4513 4524 2.340078 GCCAGACACAGAGCGACA 59.660 61.111 0.00 0.00 0.00 4.35
4514 4525 2.433318 GGCCAGACACAGAGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
4515 4526 3.695606 GGGCCAGACACAGAGCGA 61.696 66.667 4.39 0.00 0.00 4.93
4517 4528 3.655810 CTCGGGCCAGACACAGAGC 62.656 68.421 4.39 0.00 0.00 4.09
4518 4529 2.219325 GACTCGGGCCAGACACAGAG 62.219 65.000 4.39 2.24 0.00 3.35
4519 4530 2.203640 ACTCGGGCCAGACACAGA 60.204 61.111 4.39 0.00 0.00 3.41
4520 4531 2.262915 GACTCGGGCCAGACACAG 59.737 66.667 4.39 0.00 0.00 3.66
4521 4532 3.311110 GGACTCGGGCCAGACACA 61.311 66.667 4.39 0.00 0.00 3.72
4522 4533 3.311110 TGGACTCGGGCCAGACAC 61.311 66.667 4.39 0.13 0.00 3.67
4523 4534 3.311110 GTGGACTCGGGCCAGACA 61.311 66.667 4.39 0.00 35.77 3.41
4524 4535 2.997897 AGTGGACTCGGGCCAGAC 60.998 66.667 4.39 0.00 35.77 3.51
4525 4536 2.997315 CAGTGGACTCGGGCCAGA 60.997 66.667 4.39 4.83 35.77 3.86
4526 4537 4.767255 GCAGTGGACTCGGGCCAG 62.767 72.222 4.39 0.00 35.77 4.85
4528 4539 3.842925 TTTGCAGTGGACTCGGGCC 62.843 63.158 0.00 0.00 0.00 5.80
4529 4540 2.281484 TTTGCAGTGGACTCGGGC 60.281 61.111 0.00 0.00 0.00 6.13
4530 4541 0.036010 ATCTTTGCAGTGGACTCGGG 60.036 55.000 0.00 0.00 0.00 5.14
4531 4542 1.081892 CATCTTTGCAGTGGACTCGG 58.918 55.000 0.00 0.00 0.00 4.63
4543 4554 2.662006 TCTCCTCTCGTGCATCTTTG 57.338 50.000 0.00 0.00 0.00 2.77
4544 4555 2.676463 GCTTCTCCTCTCGTGCATCTTT 60.676 50.000 0.00 0.00 0.00 2.52
4545 4556 1.134848 GCTTCTCCTCTCGTGCATCTT 60.135 52.381 0.00 0.00 0.00 2.40
4546 4557 0.459489 GCTTCTCCTCTCGTGCATCT 59.541 55.000 0.00 0.00 0.00 2.90
4547 4558 0.459489 AGCTTCTCCTCTCGTGCATC 59.541 55.000 0.00 0.00 0.00 3.91
4548 4559 0.175302 CAGCTTCTCCTCTCGTGCAT 59.825 55.000 0.00 0.00 0.00 3.96
4549 4560 1.588597 CAGCTTCTCCTCTCGTGCA 59.411 57.895 0.00 0.00 0.00 4.57
4550 4561 1.153667 CCAGCTTCTCCTCTCGTGC 60.154 63.158 0.00 0.00 0.00 5.34
4551 4562 1.153667 GCCAGCTTCTCCTCTCGTG 60.154 63.158 0.00 0.00 0.00 4.35
4552 4563 2.705821 CGCCAGCTTCTCCTCTCGT 61.706 63.158 0.00 0.00 0.00 4.18
4553 4564 2.103934 CGCCAGCTTCTCCTCTCG 59.896 66.667 0.00 0.00 0.00 4.04
4554 4565 2.498726 CCGCCAGCTTCTCCTCTC 59.501 66.667 0.00 0.00 0.00 3.20
4555 4566 3.780173 GCCGCCAGCTTCTCCTCT 61.780 66.667 0.00 0.00 38.99 3.69
4556 4567 4.847444 GGCCGCCAGCTTCTCCTC 62.847 72.222 3.91 0.00 43.05 3.71
4559 4570 4.416738 AAGGGCCGCCAGCTTCTC 62.417 66.667 12.58 0.00 43.05 2.87
4560 4571 4.416738 GAAGGGCCGCCAGCTTCT 62.417 66.667 12.58 0.00 43.05 2.85
4573 4584 2.204865 TGGTATTGGCCACCCGAAGG 62.205 60.000 3.88 0.00 40.07 3.46
4574 4585 0.322997 TTGGTATTGGCCACCCGAAG 60.323 55.000 3.88 0.00 38.42 3.79
4575 4586 0.322997 CTTGGTATTGGCCACCCGAA 60.323 55.000 3.88 0.00 38.42 4.30
4576 4587 1.202099 TCTTGGTATTGGCCACCCGA 61.202 55.000 3.88 4.86 38.42 5.14
4577 4588 0.322997 TTCTTGGTATTGGCCACCCG 60.323 55.000 3.88 0.00 38.42 5.28
4578 4589 1.474330 CTTCTTGGTATTGGCCACCC 58.526 55.000 3.88 6.64 38.42 4.61
4579 4590 0.817654 GCTTCTTGGTATTGGCCACC 59.182 55.000 3.88 3.87 38.42 4.61
4580 4591 1.202348 GTGCTTCTTGGTATTGGCCAC 59.798 52.381 3.88 0.00 38.42 5.01
4581 4592 1.544724 GTGCTTCTTGGTATTGGCCA 58.455 50.000 0.00 0.00 36.62 5.36
4582 4593 0.451783 CGTGCTTCTTGGTATTGGCC 59.548 55.000 0.00 0.00 0.00 5.36
4583 4594 1.130561 GTCGTGCTTCTTGGTATTGGC 59.869 52.381 0.00 0.00 0.00 4.52
4584 4595 2.699954 AGTCGTGCTTCTTGGTATTGG 58.300 47.619 0.00 0.00 0.00 3.16
4601 4612 4.468153 AGTCTCCATAAAGGACCTGAAGTC 59.532 45.833 0.00 0.00 43.07 3.01
4602 4613 4.430441 AGTCTCCATAAAGGACCTGAAGT 58.570 43.478 0.00 0.00 43.07 3.01
4603 4614 5.428184 AAGTCTCCATAAAGGACCTGAAG 57.572 43.478 0.00 0.00 43.07 3.02
4604 4615 5.280521 GGAAAGTCTCCATAAAGGACCTGAA 60.281 44.000 0.00 0.00 43.07 3.02
4605 4616 4.225267 GGAAAGTCTCCATAAAGGACCTGA 59.775 45.833 0.00 0.00 43.07 3.86
4606 4617 4.518249 GGAAAGTCTCCATAAAGGACCTG 58.482 47.826 0.00 0.00 43.07 4.00
4607 4618 4.846168 GGAAAGTCTCCATAAAGGACCT 57.154 45.455 0.00 0.00 43.07 3.85
4618 4629 1.163554 CAGCTGCAAGGAAAGTCTCC 58.836 55.000 0.00 0.00 45.81 3.71
4619 4630 0.520847 GCAGCTGCAAGGAAAGTCTC 59.479 55.000 33.36 0.00 41.59 3.36
4620 4631 0.892814 GGCAGCTGCAAGGAAAGTCT 60.893 55.000 37.63 0.00 44.36 3.24
4621 4632 1.174712 TGGCAGCTGCAAGGAAAGTC 61.175 55.000 37.63 18.61 44.36 3.01
4622 4633 1.152694 TGGCAGCTGCAAGGAAAGT 60.153 52.632 37.63 0.00 44.36 2.66
4623 4634 1.177256 AGTGGCAGCTGCAAGGAAAG 61.177 55.000 37.63 0.00 44.36 2.62
4624 4635 1.152694 AGTGGCAGCTGCAAGGAAA 60.153 52.632 37.63 14.30 44.36 3.13
4625 4636 1.601759 GAGTGGCAGCTGCAAGGAA 60.602 57.895 37.63 16.07 44.36 3.36
4626 4637 2.033141 GAGTGGCAGCTGCAAGGA 59.967 61.111 37.63 17.05 44.36 3.36
4627 4638 3.429141 CGAGTGGCAGCTGCAAGG 61.429 66.667 37.63 16.82 44.36 3.61
4628 4639 3.429141 CCGAGTGGCAGCTGCAAG 61.429 66.667 37.63 22.43 44.36 4.01
4629 4640 3.258228 ATCCGAGTGGCAGCTGCAA 62.258 57.895 37.63 27.49 44.36 4.08
4630 4641 3.670637 GATCCGAGTGGCAGCTGCA 62.671 63.158 37.63 22.06 44.36 4.41
4631 4642 2.894387 GATCCGAGTGGCAGCTGC 60.894 66.667 30.88 30.88 41.14 5.25
4632 4643 2.584418 CGATCCGAGTGGCAGCTG 60.584 66.667 10.11 10.11 34.14 4.24
4633 4644 4.521062 GCGATCCGAGTGGCAGCT 62.521 66.667 0.00 0.00 34.14 4.24
4644 4655 1.227147 TCAATTCCGTCGGCGATCC 60.227 57.895 12.93 0.00 41.33 3.36
4645 4656 1.488261 GGTCAATTCCGTCGGCGATC 61.488 60.000 12.93 6.12 41.33 3.69
4646 4657 1.520787 GGTCAATTCCGTCGGCGAT 60.521 57.895 12.93 0.00 41.33 4.58
4647 4658 2.125832 GGTCAATTCCGTCGGCGA 60.126 61.111 12.93 4.99 41.33 5.54
4648 4659 1.740296 AAGGTCAATTCCGTCGGCG 60.740 57.895 6.34 0.29 37.95 6.46
4649 4660 0.672401 TCAAGGTCAATTCCGTCGGC 60.672 55.000 6.34 0.00 0.00 5.54
4650 4661 1.665679 CATCAAGGTCAATTCCGTCGG 59.334 52.381 4.39 4.39 0.00 4.79
4651 4662 2.616960 TCATCAAGGTCAATTCCGTCG 58.383 47.619 0.00 0.00 0.00 5.12
4652 4663 5.567138 AATTCATCAAGGTCAATTCCGTC 57.433 39.130 0.00 0.00 0.00 4.79
4653 4664 4.094887 CGAATTCATCAAGGTCAATTCCGT 59.905 41.667 6.22 0.00 33.45 4.69
4654 4665 4.094887 ACGAATTCATCAAGGTCAATTCCG 59.905 41.667 6.22 0.00 33.45 4.30
4655 4666 5.567138 ACGAATTCATCAAGGTCAATTCC 57.433 39.130 6.22 0.00 33.45 3.01
4656 4667 5.287035 GCAACGAATTCATCAAGGTCAATTC 59.713 40.000 6.22 0.00 33.62 2.17
4657 4668 5.163513 GCAACGAATTCATCAAGGTCAATT 58.836 37.500 6.22 0.00 0.00 2.32
4658 4669 4.218200 TGCAACGAATTCATCAAGGTCAAT 59.782 37.500 6.22 0.00 0.00 2.57
4659 4670 3.567585 TGCAACGAATTCATCAAGGTCAA 59.432 39.130 6.22 0.00 0.00 3.18
4660 4671 3.058293 GTGCAACGAATTCATCAAGGTCA 60.058 43.478 6.22 0.00 0.00 4.02
4661 4672 3.492313 GTGCAACGAATTCATCAAGGTC 58.508 45.455 6.22 0.00 0.00 3.85
4662 4673 2.228822 GGTGCAACGAATTCATCAAGGT 59.771 45.455 6.22 0.00 38.12 3.50
4663 4674 2.489329 AGGTGCAACGAATTCATCAAGG 59.511 45.455 6.22 0.00 38.12 3.61
4664 4675 3.837213 AGGTGCAACGAATTCATCAAG 57.163 42.857 6.22 0.00 38.12 3.02
4665 4676 3.057596 GGAAGGTGCAACGAATTCATCAA 60.058 43.478 6.22 0.00 38.12 2.57
4666 4677 2.487762 GGAAGGTGCAACGAATTCATCA 59.512 45.455 6.22 0.00 38.12 3.07
4667 4678 2.487762 TGGAAGGTGCAACGAATTCATC 59.512 45.455 6.22 0.00 38.12 2.92
4668 4679 2.489329 CTGGAAGGTGCAACGAATTCAT 59.511 45.455 6.22 0.00 38.12 2.57
4669 4680 1.879380 CTGGAAGGTGCAACGAATTCA 59.121 47.619 6.22 0.00 38.12 2.57
4670 4681 1.401539 GCTGGAAGGTGCAACGAATTC 60.402 52.381 0.00 0.00 38.12 2.17
4671 4682 0.598065 GCTGGAAGGTGCAACGAATT 59.402 50.000 0.00 0.00 38.12 2.17
4672 4683 1.244019 GGCTGGAAGGTGCAACGAAT 61.244 55.000 0.00 0.00 38.12 3.34
4673 4684 1.896660 GGCTGGAAGGTGCAACGAA 60.897 57.895 0.00 0.00 38.12 3.85
4674 4685 2.281484 GGCTGGAAGGTGCAACGA 60.281 61.111 0.00 0.00 38.12 3.85
4675 4686 3.365265 GGGCTGGAAGGTGCAACG 61.365 66.667 0.00 0.00 38.12 4.10
4676 4687 1.973812 GAGGGCTGGAAGGTGCAAC 60.974 63.158 0.00 0.00 0.00 4.17
4677 4688 2.436109 GAGGGCTGGAAGGTGCAA 59.564 61.111 0.00 0.00 0.00 4.08
4678 4689 3.650950 GGAGGGCTGGAAGGTGCA 61.651 66.667 0.00 0.00 0.00 4.57
4679 4690 4.785453 CGGAGGGCTGGAAGGTGC 62.785 72.222 0.00 0.00 0.00 5.01
4680 4691 4.785453 GCGGAGGGCTGGAAGGTG 62.785 72.222 0.00 0.00 39.11 4.00
4682 4693 4.479993 CTGCGGAGGGCTGGAAGG 62.480 72.222 0.00 0.00 44.05 3.46
4693 4704 2.465725 TTTTTACCCCTCCTGCGGA 58.534 52.632 0.00 0.00 0.00 5.54
4708 4719 3.809905 AGTCGAGCCAGAAGAAGTTTTT 58.190 40.909 0.00 0.00 0.00 1.94
4709 4720 3.070302 AGAGTCGAGCCAGAAGAAGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
4710 4721 2.630580 AGAGTCGAGCCAGAAGAAGTTT 59.369 45.455 0.00 0.00 0.00 2.66
4711 4722 2.243810 AGAGTCGAGCCAGAAGAAGTT 58.756 47.619 0.00 0.00 0.00 2.66
4712 4723 1.917872 AGAGTCGAGCCAGAAGAAGT 58.082 50.000 0.00 0.00 0.00 3.01
4713 4724 3.311486 AAAGAGTCGAGCCAGAAGAAG 57.689 47.619 0.00 0.00 0.00 2.85
4714 4725 4.866508 TTAAAGAGTCGAGCCAGAAGAA 57.133 40.909 0.00 0.00 0.00 2.52
4715 4726 4.866508 TTTAAAGAGTCGAGCCAGAAGA 57.133 40.909 0.00 0.00 0.00 2.87
4716 4727 6.310197 CAAATTTAAAGAGTCGAGCCAGAAG 58.690 40.000 0.00 0.00 0.00 2.85
4717 4728 5.334879 GCAAATTTAAAGAGTCGAGCCAGAA 60.335 40.000 0.00 0.00 0.00 3.02
4718 4729 4.154195 GCAAATTTAAAGAGTCGAGCCAGA 59.846 41.667 0.00 0.00 0.00 3.86
4719 4730 4.406943 GCAAATTTAAAGAGTCGAGCCAG 58.593 43.478 0.00 0.00 0.00 4.85
4720 4731 3.190535 GGCAAATTTAAAGAGTCGAGCCA 59.809 43.478 0.00 0.00 38.27 4.75
4721 4732 3.759418 GGCAAATTTAAAGAGTCGAGCC 58.241 45.455 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.