Multiple sequence alignment - TraesCS4A01G418600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G418600 chr4A 100.000 2718 0 0 1 2718 688499421 688502138 0.000000e+00 5020.0
1 TraesCS4A01G418600 chr4A 96.918 584 15 1 1 584 650167075 650166495 0.000000e+00 976.0
2 TraesCS4A01G418600 chr4A 83.394 554 59 14 998 1522 688451584 688452133 1.460000e-132 483.0
3 TraesCS4A01G418600 chr6B 97.631 591 10 4 1 589 662132348 662131760 0.000000e+00 1011.0
4 TraesCS4A01G418600 chr7D 87.485 855 95 6 771 1621 35377655 35376809 0.000000e+00 976.0
5 TraesCS4A01G418600 chr7D 85.024 621 89 4 2099 2718 614816148 614816765 1.780000e-176 628.0
6 TraesCS4A01G418600 chr7D 85.405 370 48 6 1159 1522 35296525 35296156 1.980000e-101 379.0
7 TraesCS4A01G418600 chr7D 89.404 151 12 3 1869 2016 14414488 14414339 1.280000e-43 187.0
8 TraesCS4A01G418600 chr7D 81.319 182 10 6 2026 2183 614729234 614729415 2.840000e-25 126.0
9 TraesCS4A01G418600 chr7D 97.917 48 1 0 1773 1820 35376773 35376726 1.730000e-12 84.2
10 TraesCS4A01G418600 chr5B 95.897 585 21 2 1 584 702398827 702399409 0.000000e+00 944.0
11 TraesCS4A01G418600 chr5B 95.593 590 23 3 1 588 420938889 420939477 0.000000e+00 942.0
12 TraesCS4A01G418600 chr5B 95.637 573 23 2 13 584 581776261 581776832 0.000000e+00 918.0
13 TraesCS4A01G418600 chr5B 96.296 108 3 1 1614 1721 455737606 455737500 2.780000e-40 176.0
14 TraesCS4A01G418600 chr3D 95.571 587 23 3 1 585 15309317 15309902 0.000000e+00 937.0
15 TraesCS4A01G418600 chrUn 95.556 585 21 3 1 584 117288897 117289477 0.000000e+00 931.0
16 TraesCS4A01G418600 chrUn 84.690 725 86 7 2018 2718 81311271 81311994 0.000000e+00 701.0
17 TraesCS4A01G418600 chr1D 95.043 585 27 2 1 584 375795861 375796444 0.000000e+00 918.0
18 TraesCS4A01G418600 chr5D 95.043 585 24 3 1 584 2601857 2601277 0.000000e+00 915.0
19 TraesCS4A01G418600 chr5D 87.419 620 78 0 2099 2718 533246338 533246957 0.000000e+00 713.0
20 TraesCS4A01G418600 chr5D 84.690 725 87 5 2018 2718 311466363 311467087 0.000000e+00 702.0
21 TraesCS4A01G418600 chr5D 93.651 126 8 0 1891 2016 311466179 311466304 3.570000e-44 189.0
22 TraesCS4A01G418600 chr4B 89.394 660 38 16 1864 2500 5624680 5624030 0.000000e+00 802.0
23 TraesCS4A01G418600 chr4B 95.370 108 4 1 1616 1723 186741770 186741664 1.290000e-38 171.0
24 TraesCS4A01G418600 chr6A 89.068 622 67 1 2097 2718 91337953 91337333 0.000000e+00 771.0
25 TraesCS4A01G418600 chr6A 79.526 718 124 9 2024 2718 5288765 5288048 8.750000e-135 490.0
26 TraesCS4A01G418600 chr6A 90.683 161 13 2 1860 2018 91338273 91338113 2.120000e-51 213.0
27 TraesCS4A01G418600 chr6A 92.857 42 3 0 2021 2062 91338053 91338012 8.130000e-06 62.1
28 TraesCS4A01G418600 chr6D 84.869 727 82 7 2018 2718 380504498 380503774 0.000000e+00 708.0
29 TraesCS4A01G418600 chr6D 95.495 111 3 1 1616 1724 362051422 362051532 2.780000e-40 176.0
30 TraesCS4A01G418600 chr7A 87.285 582 56 9 998 1564 36163763 36164341 0.000000e+00 649.0
31 TraesCS4A01G418600 chr7A 78.926 726 127 9 2018 2718 12220058 12220782 1.140000e-128 470.0
32 TraesCS4A01G418600 chr7A 79.647 624 119 8 2099 2718 641424775 641424156 2.480000e-120 442.0
33 TraesCS4A01G418600 chr2D 80.716 726 106 14 2022 2718 563782923 563782203 3.980000e-148 534.0
34 TraesCS4A01G418600 chr2D 78.962 366 67 10 2128 2488 36062856 36063216 9.720000e-60 241.0
35 TraesCS4A01G418600 chr2D 90.000 150 12 2 1869 2016 563783134 563782986 9.930000e-45 191.0
36 TraesCS4A01G418600 chr2A 79.505 727 121 13 2018 2718 655765851 655766575 2.430000e-135 492.0
37 TraesCS4A01G418600 chr2B 97.143 105 3 0 1619 1723 397939471 397939367 7.730000e-41 178.0
38 TraesCS4A01G418600 chr2B 75.325 154 21 13 625 768 712371045 712371191 1.050000e-04 58.4
39 TraesCS4A01G418600 chr3B 96.226 106 4 0 1617 1722 560117298 560117403 1.000000e-39 174.0
40 TraesCS4A01G418600 chr3B 95.370 108 4 1 1610 1717 826649015 826648909 1.290000e-38 171.0
41 TraesCS4A01G418600 chr3B 90.076 131 8 3 1591 1717 719043983 719044112 6.020000e-37 165.0
42 TraesCS4A01G418600 chr7B 94.595 111 6 0 1611 1721 5263843 5263733 3.600000e-39 172.0
43 TraesCS4A01G418600 chr7B 92.373 118 7 2 1606 1723 421056859 421056974 1.670000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G418600 chr4A 688499421 688502138 2717 False 5020.0 5020 100.000000 1 2718 1 chr4A.!!$F2 2717
1 TraesCS4A01G418600 chr4A 650166495 650167075 580 True 976.0 976 96.918000 1 584 1 chr4A.!!$R1 583
2 TraesCS4A01G418600 chr4A 688451584 688452133 549 False 483.0 483 83.394000 998 1522 1 chr4A.!!$F1 524
3 TraesCS4A01G418600 chr6B 662131760 662132348 588 True 1011.0 1011 97.631000 1 589 1 chr6B.!!$R1 588
4 TraesCS4A01G418600 chr7D 614816148 614816765 617 False 628.0 628 85.024000 2099 2718 1 chr7D.!!$F2 619
5 TraesCS4A01G418600 chr7D 35376726 35377655 929 True 530.1 976 92.701000 771 1820 2 chr7D.!!$R3 1049
6 TraesCS4A01G418600 chr5B 702398827 702399409 582 False 944.0 944 95.897000 1 584 1 chr5B.!!$F3 583
7 TraesCS4A01G418600 chr5B 420938889 420939477 588 False 942.0 942 95.593000 1 588 1 chr5B.!!$F1 587
8 TraesCS4A01G418600 chr5B 581776261 581776832 571 False 918.0 918 95.637000 13 584 1 chr5B.!!$F2 571
9 TraesCS4A01G418600 chr3D 15309317 15309902 585 False 937.0 937 95.571000 1 585 1 chr3D.!!$F1 584
10 TraesCS4A01G418600 chrUn 117288897 117289477 580 False 931.0 931 95.556000 1 584 1 chrUn.!!$F2 583
11 TraesCS4A01G418600 chrUn 81311271 81311994 723 False 701.0 701 84.690000 2018 2718 1 chrUn.!!$F1 700
12 TraesCS4A01G418600 chr1D 375795861 375796444 583 False 918.0 918 95.043000 1 584 1 chr1D.!!$F1 583
13 TraesCS4A01G418600 chr5D 2601277 2601857 580 True 915.0 915 95.043000 1 584 1 chr5D.!!$R1 583
14 TraesCS4A01G418600 chr5D 533246338 533246957 619 False 713.0 713 87.419000 2099 2718 1 chr5D.!!$F1 619
15 TraesCS4A01G418600 chr5D 311466179 311467087 908 False 445.5 702 89.170500 1891 2718 2 chr5D.!!$F2 827
16 TraesCS4A01G418600 chr4B 5624030 5624680 650 True 802.0 802 89.394000 1864 2500 1 chr4B.!!$R1 636
17 TraesCS4A01G418600 chr6A 5288048 5288765 717 True 490.0 490 79.526000 2024 2718 1 chr6A.!!$R1 694
18 TraesCS4A01G418600 chr6A 91337333 91338273 940 True 348.7 771 90.869333 1860 2718 3 chr6A.!!$R2 858
19 TraesCS4A01G418600 chr6D 380503774 380504498 724 True 708.0 708 84.869000 2018 2718 1 chr6D.!!$R1 700
20 TraesCS4A01G418600 chr7A 36163763 36164341 578 False 649.0 649 87.285000 998 1564 1 chr7A.!!$F2 566
21 TraesCS4A01G418600 chr7A 12220058 12220782 724 False 470.0 470 78.926000 2018 2718 1 chr7A.!!$F1 700
22 TraesCS4A01G418600 chr7A 641424156 641424775 619 True 442.0 442 79.647000 2099 2718 1 chr7A.!!$R1 619
23 TraesCS4A01G418600 chr2D 563782203 563783134 931 True 362.5 534 85.358000 1869 2718 2 chr2D.!!$R1 849
24 TraesCS4A01G418600 chr2A 655765851 655766575 724 False 492.0 492 79.505000 2018 2718 1 chr2A.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 676 0.040958 CAGTTCACTCCAGCGCAAAC 60.041 55.0 11.47 2.14 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2641 2785 0.033601 ATTATCCCGCCCAACTGCAA 60.034 50.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 179 7.648142 TGCGACTTTAATTGTTTCTCTGATTT 58.352 30.769 0.00 0.00 0.00 2.17
414 420 8.512138 TCATCGATTTATGTGTATACATCGTCT 58.488 33.333 18.62 9.04 44.00 4.18
427 433 8.394877 TGTATACATCGTCTATTTGCCTTTTTG 58.605 33.333 0.08 0.00 0.00 2.44
428 434 4.485163 ACATCGTCTATTTGCCTTTTTGC 58.515 39.130 0.00 0.00 0.00 3.68
430 436 5.414454 ACATCGTCTATTTGCCTTTTTGCTA 59.586 36.000 0.00 0.00 0.00 3.49
431 437 5.545658 TCGTCTATTTGCCTTTTTGCTAG 57.454 39.130 0.00 0.00 0.00 3.42
588 595 4.792057 GCACGGGCATACTACTAGTACAAG 60.792 50.000 3.77 0.00 40.72 3.16
589 596 4.337555 CACGGGCATACTACTAGTACAAGT 59.662 45.833 0.00 0.00 32.84 3.16
590 597 5.528690 CACGGGCATACTACTAGTACAAGTA 59.471 44.000 6.49 6.49 32.84 2.24
591 598 9.576913 GCACGGGCATACTACTAGTACAAGTAG 62.577 48.148 3.77 9.02 45.40 2.57
597 604 7.521910 GCATACTACTAGTACAAGTAGGAAGCC 60.522 44.444 16.39 0.14 45.54 4.35
599 606 6.134040 CTACTAGTACAAGTAGGAAGCCAC 57.866 45.833 0.00 0.00 43.47 5.01
600 607 3.442977 ACTAGTACAAGTAGGAAGCCACG 59.557 47.826 0.00 0.00 0.00 4.94
601 608 2.245582 AGTACAAGTAGGAAGCCACGT 58.754 47.619 0.00 0.00 0.00 4.49
602 609 2.631545 AGTACAAGTAGGAAGCCACGTT 59.368 45.455 0.00 0.00 0.00 3.99
603 610 1.878953 ACAAGTAGGAAGCCACGTTG 58.121 50.000 0.00 0.00 0.00 4.10
604 611 0.517316 CAAGTAGGAAGCCACGTTGC 59.483 55.000 2.86 2.86 0.00 4.17
605 612 0.396811 AAGTAGGAAGCCACGTTGCT 59.603 50.000 8.58 8.58 45.43 3.91
611 618 2.032681 AGCCACGTTGCTTCCTCC 59.967 61.111 8.58 0.00 38.85 4.30
612 619 2.281484 GCCACGTTGCTTCCTCCA 60.281 61.111 4.03 0.00 0.00 3.86
613 620 1.896660 GCCACGTTGCTTCCTCCAA 60.897 57.895 4.03 0.00 0.00 3.53
614 621 1.452145 GCCACGTTGCTTCCTCCAAA 61.452 55.000 4.03 0.00 0.00 3.28
615 622 1.028905 CCACGTTGCTTCCTCCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
616 623 1.407258 CCACGTTGCTTCCTCCAAAAA 59.593 47.619 0.00 0.00 0.00 1.94
632 639 2.863401 AAAAAGACACGTTGCTTCCC 57.137 45.000 0.59 0.00 0.00 3.97
633 640 1.757682 AAAAGACACGTTGCTTCCCA 58.242 45.000 0.59 0.00 0.00 4.37
634 641 1.021968 AAAGACACGTTGCTTCCCAC 58.978 50.000 0.59 0.00 0.00 4.61
635 642 1.157870 AAGACACGTTGCTTCCCACG 61.158 55.000 0.00 0.00 0.00 4.94
636 643 1.885850 GACACGTTGCTTCCCACGT 60.886 57.895 0.00 0.00 39.55 4.49
638 645 2.590575 ACGTTGCTTCCCACGTGG 60.591 61.111 28.26 28.26 37.44 4.94
657 664 2.836154 TGGAGCCCACCAGTTCAC 59.164 61.111 0.00 0.00 34.77 3.18
658 665 1.770110 TGGAGCCCACCAGTTCACT 60.770 57.895 0.00 0.00 34.77 3.41
659 666 1.003233 GGAGCCCACCAGTTCACTC 60.003 63.158 0.00 0.00 0.00 3.51
660 667 1.003233 GAGCCCACCAGTTCACTCC 60.003 63.158 0.00 0.00 0.00 3.85
661 668 1.768684 GAGCCCACCAGTTCACTCCA 61.769 60.000 0.00 0.00 0.00 3.86
662 669 1.302832 GCCCACCAGTTCACTCCAG 60.303 63.158 0.00 0.00 0.00 3.86
663 670 1.302832 CCCACCAGTTCACTCCAGC 60.303 63.158 0.00 0.00 0.00 4.85
664 671 1.669115 CCACCAGTTCACTCCAGCG 60.669 63.158 0.00 0.00 0.00 5.18
665 672 2.031163 ACCAGTTCACTCCAGCGC 59.969 61.111 0.00 0.00 0.00 5.92
666 673 2.031012 CCAGTTCACTCCAGCGCA 59.969 61.111 11.47 0.00 0.00 6.09
667 674 1.597854 CCAGTTCACTCCAGCGCAA 60.598 57.895 11.47 0.00 0.00 4.85
668 675 1.165907 CCAGTTCACTCCAGCGCAAA 61.166 55.000 11.47 0.00 0.00 3.68
669 676 0.040958 CAGTTCACTCCAGCGCAAAC 60.041 55.000 11.47 2.14 0.00 2.93
670 677 1.082756 GTTCACTCCAGCGCAAACG 60.083 57.895 11.47 0.00 44.07 3.60
681 688 4.940593 GCAAACGCGCCAGGCAAA 62.941 61.111 13.30 0.00 43.84 3.68
682 689 2.049248 CAAACGCGCCAGGCAAAT 60.049 55.556 13.30 0.00 43.84 2.32
683 690 1.664333 CAAACGCGCCAGGCAAATT 60.664 52.632 13.30 0.00 43.84 1.82
684 691 1.664333 AAACGCGCCAGGCAAATTG 60.664 52.632 13.30 0.00 43.84 2.32
685 692 3.572196 AACGCGCCAGGCAAATTGG 62.572 57.895 13.30 0.00 43.84 3.16
686 693 3.746889 CGCGCCAGGCAAATTGGA 61.747 61.111 13.30 0.00 43.84 3.53
687 694 2.125952 GCGCCAGGCAAATTGGAC 60.126 61.111 13.30 0.00 42.87 4.02
688 695 2.179018 CGCCAGGCAAATTGGACG 59.821 61.111 13.30 0.00 37.96 4.79
689 696 2.573340 GCCAGGCAAATTGGACGG 59.427 61.111 6.55 0.00 37.96 4.79
690 697 2.573340 CCAGGCAAATTGGACGGC 59.427 61.111 0.00 0.00 37.96 5.68
691 698 1.978617 CCAGGCAAATTGGACGGCT 60.979 57.895 0.00 0.00 37.96 5.52
692 699 1.535204 CCAGGCAAATTGGACGGCTT 61.535 55.000 0.00 0.00 37.96 4.35
693 700 0.388907 CAGGCAAATTGGACGGCTTG 60.389 55.000 0.00 0.00 32.47 4.01
694 701 0.539438 AGGCAAATTGGACGGCTTGA 60.539 50.000 0.00 0.00 30.19 3.02
695 702 0.532115 GGCAAATTGGACGGCTTGAT 59.468 50.000 0.00 0.00 0.00 2.57
696 703 1.469767 GGCAAATTGGACGGCTTGATC 60.470 52.381 0.00 0.00 0.00 2.92
697 704 1.202114 GCAAATTGGACGGCTTGATCA 59.798 47.619 0.00 0.00 0.00 2.92
698 705 2.867429 CAAATTGGACGGCTTGATCAC 58.133 47.619 0.00 0.00 0.00 3.06
699 706 1.086696 AATTGGACGGCTTGATCACG 58.913 50.000 0.00 0.00 0.00 4.35
700 707 1.369091 ATTGGACGGCTTGATCACGC 61.369 55.000 15.47 15.47 0.00 5.34
701 708 2.434185 GGACGGCTTGATCACGCA 60.434 61.111 23.79 0.00 0.00 5.24
702 709 1.815421 GGACGGCTTGATCACGCAT 60.815 57.895 23.79 12.46 0.00 4.73
703 710 1.349627 GACGGCTTGATCACGCATG 59.650 57.895 23.79 17.63 0.00 4.06
704 711 1.079197 ACGGCTTGATCACGCATGA 60.079 52.632 23.79 0.00 39.83 3.07
712 719 2.694065 ATCACGCATGATCCAACGG 58.306 52.632 0.00 0.00 42.15 4.44
713 720 1.439353 ATCACGCATGATCCAACGGC 61.439 55.000 0.00 0.00 42.15 5.68
715 722 4.596180 CGCATGATCCAACGGCGC 62.596 66.667 6.90 0.00 41.27 6.53
716 723 4.596180 GCATGATCCAACGGCGCG 62.596 66.667 6.90 0.00 0.00 6.86
717 724 4.596180 CATGATCCAACGGCGCGC 62.596 66.667 25.94 25.94 0.00 6.86
745 752 2.370281 TGACGAGTCAGGAAATCAGC 57.630 50.000 1.24 0.00 34.14 4.26
746 753 1.066858 TGACGAGTCAGGAAATCAGCC 60.067 52.381 1.24 0.00 34.14 4.85
747 754 0.250513 ACGAGTCAGGAAATCAGCCC 59.749 55.000 0.00 0.00 0.00 5.19
748 755 0.807667 CGAGTCAGGAAATCAGCCCG 60.808 60.000 0.00 0.00 0.00 6.13
749 756 0.250513 GAGTCAGGAAATCAGCCCGT 59.749 55.000 0.00 0.00 0.00 5.28
750 757 0.693049 AGTCAGGAAATCAGCCCGTT 59.307 50.000 0.00 0.00 0.00 4.44
751 758 0.804989 GTCAGGAAATCAGCCCGTTG 59.195 55.000 0.00 0.00 0.00 4.10
752 759 0.690192 TCAGGAAATCAGCCCGTTGA 59.310 50.000 0.00 0.00 0.00 3.18
753 760 1.281867 TCAGGAAATCAGCCCGTTGAT 59.718 47.619 0.00 0.00 39.42 2.57
754 761 2.094675 CAGGAAATCAGCCCGTTGATT 58.905 47.619 1.38 1.38 46.81 2.57
805 812 1.354040 CGAGCAATCAGTCAGACCAC 58.646 55.000 0.00 0.00 0.00 4.16
864 871 0.389426 CCGGACTACAGGTTTGACCG 60.389 60.000 0.00 0.00 44.90 4.79
872 879 0.108615 CAGGTTTGACCGCTCGATCT 60.109 55.000 0.00 0.00 44.90 2.75
879 886 4.322080 TTGACCGCTCGATCTGATTAAT 57.678 40.909 0.00 0.00 0.00 1.40
880 887 5.447624 TTGACCGCTCGATCTGATTAATA 57.552 39.130 0.00 0.00 0.00 0.98
885 892 4.169508 CGCTCGATCTGATTAATACCCAG 58.830 47.826 0.00 0.00 0.00 4.45
910 917 1.025041 GGTCGCCATCAATCCTTTCC 58.975 55.000 0.00 0.00 0.00 3.13
920 927 3.873910 TCAATCCTTTCCATTCCGACTC 58.126 45.455 0.00 0.00 0.00 3.36
925 932 0.391130 TTTCCATTCCGACTCCTGCG 60.391 55.000 0.00 0.00 0.00 5.18
941 948 4.700365 CGCGCACGGACACTCTCA 62.700 66.667 8.75 0.00 34.97 3.27
942 949 2.355837 GCGCACGGACACTCTCAA 60.356 61.111 0.30 0.00 0.00 3.02
943 950 2.658707 GCGCACGGACACTCTCAAC 61.659 63.158 0.30 0.00 0.00 3.18
944 951 1.007271 CGCACGGACACTCTCAACT 60.007 57.895 0.00 0.00 0.00 3.16
945 952 0.597637 CGCACGGACACTCTCAACTT 60.598 55.000 0.00 0.00 0.00 2.66
946 953 0.861837 GCACGGACACTCTCAACTTG 59.138 55.000 0.00 0.00 0.00 3.16
947 954 1.502231 CACGGACACTCTCAACTTGG 58.498 55.000 0.00 0.00 0.00 3.61
948 955 0.393077 ACGGACACTCTCAACTTGGG 59.607 55.000 0.00 0.00 0.00 4.12
956 963 1.627834 CTCTCAACTTGGGAGCTTCCT 59.372 52.381 13.68 0.00 38.28 3.36
968 975 1.757699 GAGCTTCCTAGTTCCATCCGT 59.242 52.381 0.00 0.00 0.00 4.69
996 1003 2.897350 GCACAGGTCTATGCGGCC 60.897 66.667 0.00 0.00 30.97 6.13
1053 1072 0.519077 GCAGCACTAACAGAACAGGC 59.481 55.000 0.00 0.00 0.00 4.85
1072 1095 5.068636 CAGGCAATTATTAGCATCTGGTCT 58.931 41.667 0.00 0.00 0.00 3.85
1074 1097 6.148480 CAGGCAATTATTAGCATCTGGTCTAC 59.852 42.308 0.00 0.00 0.00 2.59
1127 1160 0.478507 CAAAAGGGGGTCTCAGGTGT 59.521 55.000 0.00 0.00 0.00 4.16
1139 1172 0.611896 TCAGGTGTCTGATCGGAGCA 60.612 55.000 3.91 3.69 44.39 4.26
1178 1211 0.687354 TGGAGAGGTTTCTGACTGCC 59.313 55.000 0.00 0.00 32.53 4.85
1181 1214 0.980423 AGAGGTTTCTGACTGCCCTC 59.020 55.000 0.00 0.00 41.65 4.30
1192 1225 4.742201 TGCCCTCGTCTTCTGCGC 62.742 66.667 0.00 0.00 0.00 6.09
1225 1261 4.456911 GGATGAATACGGCATGTTGATGAT 59.543 41.667 0.00 0.00 0.00 2.45
1226 1262 4.816786 TGAATACGGCATGTTGATGATG 57.183 40.909 0.00 0.00 0.00 3.07
1227 1263 4.450053 TGAATACGGCATGTTGATGATGA 58.550 39.130 0.00 0.00 0.00 2.92
1232 1268 2.744166 CGGCATGTTGATGATGACCTCT 60.744 50.000 0.00 0.00 0.00 3.69
1273 1309 2.202851 CGCTGGCTCGATGAAGCT 60.203 61.111 10.48 0.00 42.13 3.74
1311 1347 2.279517 CTGAGGATGCGTACGCCC 60.280 66.667 35.11 28.72 41.09 6.13
1340 1376 2.184322 GGATTCTGCGGCGAGACA 59.816 61.111 12.98 0.00 0.00 3.41
1342 1378 0.811616 GGATTCTGCGGCGAGACAAT 60.812 55.000 12.98 1.87 0.00 2.71
1364 1400 2.202703 CAGCGGCGTACTGGGTAC 60.203 66.667 9.37 0.00 35.86 3.34
1407 1443 1.876453 CTGCTTTGACACCGTCGTCG 61.876 60.000 0.00 0.00 38.84 5.12
1416 1452 2.736995 CCGTCGTCGTGCACCAAT 60.737 61.111 12.15 0.00 35.01 3.16
1469 1511 3.552132 ATGGACGTGTGTAATGGCATA 57.448 42.857 0.00 0.00 0.00 3.14
1526 1571 4.158786 TGGATCAATTGGGTTGTTGACAT 58.841 39.130 5.42 0.00 37.19 3.06
1553 1599 7.919621 GTGCGTCTAGTAATGGTTTACTTATCT 59.080 37.037 3.93 0.00 44.48 1.98
1598 1644 7.648908 TGCATAACTTTGACAAAAATGAGTCAG 59.351 33.333 16.17 0.66 44.65 3.51
1617 1663 5.304614 AGTCAGGGTCGCATATTAAGTGTAT 59.695 40.000 0.00 0.00 0.00 2.29
1618 1664 6.492429 AGTCAGGGTCGCATATTAAGTGTATA 59.508 38.462 0.00 0.00 0.00 1.47
1619 1665 7.178628 AGTCAGGGTCGCATATTAAGTGTATAT 59.821 37.037 0.00 0.00 0.00 0.86
1620 1666 8.464404 GTCAGGGTCGCATATTAAGTGTATATA 58.536 37.037 0.00 0.00 0.00 0.86
1621 1667 8.464404 TCAGGGTCGCATATTAAGTGTATATAC 58.536 37.037 5.89 5.89 0.00 1.47
1622 1668 8.467598 CAGGGTCGCATATTAAGTGTATATACT 58.532 37.037 13.89 0.00 0.00 2.12
1623 1669 8.684520 AGGGTCGCATATTAAGTGTATATACTC 58.315 37.037 13.89 10.27 0.00 2.59
1624 1670 7.919621 GGGTCGCATATTAAGTGTATATACTCC 59.080 40.741 13.89 4.97 0.00 3.85
1625 1671 7.919621 GGTCGCATATTAAGTGTATATACTCCC 59.080 40.741 13.89 2.68 0.00 4.30
1626 1672 8.684520 GTCGCATATTAAGTGTATATACTCCCT 58.315 37.037 13.89 4.78 0.00 4.20
1627 1673 8.900781 TCGCATATTAAGTGTATATACTCCCTC 58.099 37.037 13.89 0.82 0.00 4.30
1628 1674 8.136165 CGCATATTAAGTGTATATACTCCCTCC 58.864 40.741 13.89 0.00 0.00 4.30
1629 1675 8.136165 GCATATTAAGTGTATATACTCCCTCCG 58.864 40.741 13.89 0.00 0.00 4.63
1630 1676 9.186837 CATATTAAGTGTATATACTCCCTCCGT 57.813 37.037 13.89 0.00 0.00 4.69
1631 1677 7.700022 ATTAAGTGTATATACTCCCTCCGTC 57.300 40.000 13.89 0.00 0.00 4.79
1632 1678 4.031636 AGTGTATATACTCCCTCCGTCC 57.968 50.000 13.89 0.00 0.00 4.79
1633 1679 3.087781 GTGTATATACTCCCTCCGTCCC 58.912 54.545 13.89 0.00 0.00 4.46
1634 1680 2.718062 TGTATATACTCCCTCCGTCCCA 59.282 50.000 13.89 0.00 0.00 4.37
1635 1681 3.140707 TGTATATACTCCCTCCGTCCCAA 59.859 47.826 13.89 0.00 0.00 4.12
1636 1682 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1637 1683 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1638 1684 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1639 1685 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1640 1686 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1641 1687 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1642 1688 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1643 1689 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1644 1690 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1645 1691 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1646 1692 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1647 1693 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1648 1694 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1649 1695 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1650 1696 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1651 1697 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1652 1698 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1653 1699 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1654 1700 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1655 1701 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1656 1702 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1657 1703 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1658 1704 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1661 1707 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
1662 1708 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
1663 1709 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
1664 1710 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
1665 1711 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
1666 1712 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
1668 1714 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
1685 1731 9.892130 AGCTCTAGTACAAATTTGTATTAAGCT 57.108 29.630 31.75 31.75 44.59 3.74
1694 1740 8.850156 ACAAATTTGTATTAAGCTCAAGACACT 58.150 29.630 22.10 0.00 40.16 3.55
1695 1741 9.683069 CAAATTTGTATTAAGCTCAAGACACTT 57.317 29.630 10.15 0.00 29.84 3.16
1706 1752 7.352719 AGCTCAAGACACTTATTTTAAGACG 57.647 36.000 1.47 0.00 0.00 4.18
1707 1753 6.369065 AGCTCAAGACACTTATTTTAAGACGG 59.631 38.462 1.47 0.00 0.00 4.79
1708 1754 6.367969 GCTCAAGACACTTATTTTAAGACGGA 59.632 38.462 1.47 0.00 0.00 4.69
1709 1755 7.412020 GCTCAAGACACTTATTTTAAGACGGAG 60.412 40.741 1.47 0.00 0.00 4.63
1710 1756 6.872020 TCAAGACACTTATTTTAAGACGGAGG 59.128 38.462 1.47 0.00 0.00 4.30
1711 1757 5.731591 AGACACTTATTTTAAGACGGAGGG 58.268 41.667 1.47 0.00 0.00 4.30
1712 1758 5.482878 AGACACTTATTTTAAGACGGAGGGA 59.517 40.000 1.47 0.00 0.00 4.20
1713 1759 5.731591 ACACTTATTTTAAGACGGAGGGAG 58.268 41.667 1.47 0.00 0.00 4.30
1714 1760 5.247792 ACACTTATTTTAAGACGGAGGGAGT 59.752 40.000 1.47 0.00 0.00 3.85
1715 1761 6.438425 ACACTTATTTTAAGACGGAGGGAGTA 59.562 38.462 1.47 0.00 0.00 2.59
1716 1762 7.125356 ACACTTATTTTAAGACGGAGGGAGTAT 59.875 37.037 1.47 0.00 0.00 2.12
1717 1763 8.636213 CACTTATTTTAAGACGGAGGGAGTATA 58.364 37.037 1.47 0.00 0.00 1.47
1726 1772 8.522542 AAGACGGAGGGAGTATAATATATCAC 57.477 38.462 0.00 0.00 0.00 3.06
1727 1773 7.061688 AGACGGAGGGAGTATAATATATCACC 58.938 42.308 0.00 0.00 0.00 4.02
1756 1802 9.911788 AATTGTGTCTTTGATTATCTATCCTGT 57.088 29.630 0.00 0.00 31.87 4.00
1757 1803 8.722480 TTGTGTCTTTGATTATCTATCCTGTG 57.278 34.615 0.00 0.00 31.87 3.66
1758 1804 7.275183 TGTGTCTTTGATTATCTATCCTGTGG 58.725 38.462 0.00 0.00 31.87 4.17
1759 1805 7.092891 TGTGTCTTTGATTATCTATCCTGTGGT 60.093 37.037 0.00 0.00 31.87 4.16
1760 1806 7.770897 GTGTCTTTGATTATCTATCCTGTGGTT 59.229 37.037 0.00 0.00 31.87 3.67
1761 1807 7.987458 TGTCTTTGATTATCTATCCTGTGGTTC 59.013 37.037 0.00 0.00 31.87 3.62
1762 1808 7.169982 GTCTTTGATTATCTATCCTGTGGTTCG 59.830 40.741 0.00 0.00 31.87 3.95
1763 1809 4.883083 TGATTATCTATCCTGTGGTTCGC 58.117 43.478 0.00 0.00 31.87 4.70
1764 1810 4.588951 TGATTATCTATCCTGTGGTTCGCT 59.411 41.667 0.00 0.00 31.87 4.93
1765 1811 5.773176 TGATTATCTATCCTGTGGTTCGCTA 59.227 40.000 0.00 0.00 31.87 4.26
1766 1812 6.437477 TGATTATCTATCCTGTGGTTCGCTAT 59.563 38.462 0.00 0.00 31.87 2.97
1767 1813 4.527509 ATCTATCCTGTGGTTCGCTATG 57.472 45.455 0.00 0.00 0.00 2.23
1768 1814 2.035961 TCTATCCTGTGGTTCGCTATGC 59.964 50.000 0.00 0.00 0.00 3.14
1769 1815 0.179045 ATCCTGTGGTTCGCTATGCC 60.179 55.000 0.00 0.00 0.00 4.40
1770 1816 1.078497 CCTGTGGTTCGCTATGCCA 60.078 57.895 0.00 0.00 0.00 4.92
1771 1817 0.464373 CCTGTGGTTCGCTATGCCAT 60.464 55.000 0.00 0.00 34.52 4.40
1781 1827 3.925379 TCGCTATGCCATATGAACGATT 58.075 40.909 3.65 0.00 0.00 3.34
1820 1866 2.880443 TGAATCTCCCTTTTGCTTGCT 58.120 42.857 0.00 0.00 0.00 3.91
1821 1867 3.233507 TGAATCTCCCTTTTGCTTGCTT 58.766 40.909 0.00 0.00 0.00 3.91
1822 1868 3.642848 TGAATCTCCCTTTTGCTTGCTTT 59.357 39.130 0.00 0.00 0.00 3.51
1823 1869 4.101430 TGAATCTCCCTTTTGCTTGCTTTT 59.899 37.500 0.00 0.00 0.00 2.27
1824 1870 3.733443 TCTCCCTTTTGCTTGCTTTTC 57.267 42.857 0.00 0.00 0.00 2.29
1825 1871 2.034558 TCTCCCTTTTGCTTGCTTTTCG 59.965 45.455 0.00 0.00 0.00 3.46
1826 1872 1.068434 TCCCTTTTGCTTGCTTTTCGG 59.932 47.619 0.00 0.00 0.00 4.30
1827 1873 0.861185 CCTTTTGCTTGCTTTTCGGC 59.139 50.000 0.00 0.00 0.00 5.54
1828 1874 1.569708 CTTTTGCTTGCTTTTCGGCA 58.430 45.000 0.00 0.00 40.74 5.69
1829 1875 2.137523 CTTTTGCTTGCTTTTCGGCAT 58.862 42.857 0.00 0.00 42.09 4.40
1830 1876 1.782044 TTTGCTTGCTTTTCGGCATC 58.218 45.000 0.00 0.00 42.09 3.91
1831 1877 0.387112 TTGCTTGCTTTTCGGCATCG 60.387 50.000 0.00 0.00 42.09 3.84
1832 1878 1.514873 GCTTGCTTTTCGGCATCGG 60.515 57.895 0.00 0.00 42.09 4.18
1833 1879 1.875963 CTTGCTTTTCGGCATCGGT 59.124 52.632 0.00 0.00 42.09 4.69
1834 1880 1.083489 CTTGCTTTTCGGCATCGGTA 58.917 50.000 0.00 0.00 42.09 4.02
1835 1881 0.800012 TTGCTTTTCGGCATCGGTAC 59.200 50.000 0.00 0.00 42.09 3.34
1836 1882 1.355796 TGCTTTTCGGCATCGGTACG 61.356 55.000 0.00 0.00 45.93 3.67
1848 1894 2.278661 GGTACGCACTAGCTCGGC 60.279 66.667 8.74 0.00 39.10 5.54
1849 1895 2.488355 GTACGCACTAGCTCGGCA 59.512 61.111 8.74 0.00 39.10 5.69
1850 1896 1.872679 GTACGCACTAGCTCGGCAC 60.873 63.158 8.74 3.34 39.10 5.01
1851 1897 3.060020 TACGCACTAGCTCGGCACC 62.060 63.158 8.74 0.00 39.10 5.01
1852 1898 4.435436 CGCACTAGCTCGGCACCA 62.435 66.667 0.00 0.00 39.10 4.17
1853 1899 2.815647 GCACTAGCTCGGCACCAC 60.816 66.667 0.00 0.00 37.91 4.16
1854 1900 2.656646 CACTAGCTCGGCACCACA 59.343 61.111 0.00 0.00 0.00 4.17
1855 1901 1.738099 CACTAGCTCGGCACCACAC 60.738 63.158 0.00 0.00 0.00 3.82
1856 1902 2.125512 CTAGCTCGGCACCACACC 60.126 66.667 0.00 0.00 0.00 4.16
2067 2181 0.317938 CGACCAGGATCCGATTCGAC 60.318 60.000 20.84 5.10 0.00 4.20
2081 2195 3.822192 CGACTGGATCCGGTGCGA 61.822 66.667 31.24 0.00 35.39 5.10
2116 2260 4.308458 CGGAGGCAACCACACCGA 62.308 66.667 0.00 0.00 45.31 4.69
2126 2270 3.338249 CAACCACACCGAAGATGAGATT 58.662 45.455 0.00 0.00 0.00 2.40
2204 2348 1.482278 CTAGCACGGAGAATCTTCGC 58.518 55.000 11.40 0.00 35.62 4.70
2257 2401 3.688159 CGTTTCCGTCCTCCCCGT 61.688 66.667 0.00 0.00 0.00 5.28
2271 2415 2.102749 CCGTCGGCCGAATTCGTA 59.897 61.111 32.93 1.80 39.56 3.43
2410 2554 2.827190 TCGCCGTAGATCGCTGGT 60.827 61.111 2.78 0.00 38.35 4.00
2414 2558 1.453762 GCCGTAGATCGCTGGTACCT 61.454 60.000 14.36 0.00 38.35 3.08
2524 2668 4.083855 TCAGCTGTTTTCACAATCGATGAC 60.084 41.667 14.67 0.00 30.36 3.06
2534 2678 6.499234 TCACAATCGATGACATTGTTTGAT 57.501 33.333 24.20 11.73 41.58 2.57
2545 2689 2.507407 TTGTTTGATCCAGTAGGGGC 57.493 50.000 0.00 0.00 37.22 5.80
2552 2696 4.274794 TGATCCAGTAGGGGCTAAACTA 57.725 45.455 0.00 0.00 37.22 2.24
2554 2698 5.034200 TGATCCAGTAGGGGCTAAACTAAA 58.966 41.667 0.00 0.00 37.22 1.85
2594 2738 1.414158 AATCACCATCGACGGAGGAT 58.586 50.000 3.60 3.94 0.00 3.24
2639 2783 0.117140 TTTCCCCTGAGCTGAGAGGA 59.883 55.000 0.00 0.00 0.00 3.71
2641 2785 1.001503 CCCCTGAGCTGAGAGGAGT 59.998 63.158 0.01 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 179 7.442666 TGCTACGGACAACAATGCATATAAATA 59.557 33.333 0.00 0.00 0.00 1.40
414 420 5.467035 AACTGCTAGCAAAAAGGCAAATA 57.533 34.783 19.86 0.00 34.21 1.40
427 433 6.721571 TCACTTGTAATGTAAACTGCTAGC 57.278 37.500 8.10 8.10 0.00 3.42
428 434 8.311650 ACTTCACTTGTAATGTAAACTGCTAG 57.688 34.615 0.00 0.00 0.00 3.42
430 436 8.148351 TCTACTTCACTTGTAATGTAAACTGCT 58.852 33.333 0.00 0.00 0.00 4.24
431 437 8.221766 GTCTACTTCACTTGTAATGTAAACTGC 58.778 37.037 0.00 0.00 0.00 4.40
588 595 4.695560 AGCAACGTGGCTTCCTAC 57.304 55.556 12.94 0.00 42.71 3.18
595 602 1.452145 TTTGGAGGAAGCAACGTGGC 61.452 55.000 6.88 6.88 0.00 5.01
596 603 1.028905 TTTTGGAGGAAGCAACGTGG 58.971 50.000 0.00 0.00 0.00 4.94
597 604 2.861462 TTTTTGGAGGAAGCAACGTG 57.139 45.000 0.00 0.00 0.00 4.49
613 620 2.096248 TGGGAAGCAACGTGTCTTTTT 58.904 42.857 0.00 0.00 0.00 1.94
614 621 1.404035 GTGGGAAGCAACGTGTCTTTT 59.596 47.619 0.00 0.00 0.00 2.27
615 622 1.021968 GTGGGAAGCAACGTGTCTTT 58.978 50.000 0.00 0.00 0.00 2.52
616 623 1.157870 CGTGGGAAGCAACGTGTCTT 61.158 55.000 2.63 2.63 35.13 3.01
617 624 1.594293 CGTGGGAAGCAACGTGTCT 60.594 57.895 0.00 0.00 35.13 3.41
618 625 2.935955 CGTGGGAAGCAACGTGTC 59.064 61.111 0.00 0.00 35.13 3.67
640 647 1.768684 GAGTGAACTGGTGGGCTCCA 61.769 60.000 0.00 2.51 36.00 3.86
641 648 1.003233 GAGTGAACTGGTGGGCTCC 60.003 63.158 0.00 0.00 0.00 4.70
642 649 1.003233 GGAGTGAACTGGTGGGCTC 60.003 63.158 0.00 0.00 0.00 4.70
643 650 1.770110 TGGAGTGAACTGGTGGGCT 60.770 57.895 0.00 0.00 0.00 5.19
644 651 1.302832 CTGGAGTGAACTGGTGGGC 60.303 63.158 0.00 0.00 0.00 5.36
645 652 1.302832 GCTGGAGTGAACTGGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
646 653 1.669115 CGCTGGAGTGAACTGGTGG 60.669 63.158 0.00 0.00 0.00 4.61
647 654 2.320587 GCGCTGGAGTGAACTGGTG 61.321 63.158 0.00 0.00 0.00 4.17
648 655 2.031163 GCGCTGGAGTGAACTGGT 59.969 61.111 0.00 0.00 0.00 4.00
649 656 1.165907 TTTGCGCTGGAGTGAACTGG 61.166 55.000 9.73 0.00 0.00 4.00
650 657 0.040958 GTTTGCGCTGGAGTGAACTG 60.041 55.000 9.73 0.00 0.00 3.16
651 658 1.498865 CGTTTGCGCTGGAGTGAACT 61.499 55.000 9.73 0.00 0.00 3.01
652 659 1.082756 CGTTTGCGCTGGAGTGAAC 60.083 57.895 9.73 1.61 0.00 3.18
653 660 3.329231 CGTTTGCGCTGGAGTGAA 58.671 55.556 9.73 0.00 0.00 3.18
664 671 4.940593 TTTGCCTGGCGCGTTTGC 62.941 61.111 14.98 6.53 42.08 3.68
665 672 1.664333 AATTTGCCTGGCGCGTTTG 60.664 52.632 14.98 0.00 42.08 2.93
666 673 1.664333 CAATTTGCCTGGCGCGTTT 60.664 52.632 14.98 2.20 42.08 3.60
667 674 2.049248 CAATTTGCCTGGCGCGTT 60.049 55.556 14.98 5.32 42.08 4.84
668 675 4.054825 CCAATTTGCCTGGCGCGT 62.055 61.111 14.98 0.00 42.08 6.01
669 676 3.746889 TCCAATTTGCCTGGCGCG 61.747 61.111 14.98 0.00 42.08 6.86
670 677 2.125952 GTCCAATTTGCCTGGCGC 60.126 61.111 14.98 0.00 33.63 6.53
671 678 2.179018 CGTCCAATTTGCCTGGCG 59.821 61.111 14.98 0.00 33.63 5.69
672 679 2.573340 CCGTCCAATTTGCCTGGC 59.427 61.111 12.87 12.87 33.63 4.85
673 680 1.535204 AAGCCGTCCAATTTGCCTGG 61.535 55.000 0.00 0.00 35.05 4.45
674 681 0.388907 CAAGCCGTCCAATTTGCCTG 60.389 55.000 0.00 0.00 0.00 4.85
675 682 0.539438 TCAAGCCGTCCAATTTGCCT 60.539 50.000 0.00 0.00 0.00 4.75
676 683 0.532115 ATCAAGCCGTCCAATTTGCC 59.468 50.000 0.00 0.00 0.00 4.52
677 684 1.202114 TGATCAAGCCGTCCAATTTGC 59.798 47.619 0.00 0.00 0.00 3.68
678 685 2.728846 CGTGATCAAGCCGTCCAATTTG 60.729 50.000 0.00 0.00 0.00 2.32
679 686 1.468520 CGTGATCAAGCCGTCCAATTT 59.531 47.619 0.00 0.00 0.00 1.82
680 687 1.086696 CGTGATCAAGCCGTCCAATT 58.913 50.000 0.00 0.00 0.00 2.32
681 688 1.369091 GCGTGATCAAGCCGTCCAAT 61.369 55.000 21.32 0.00 0.00 3.16
682 689 2.032634 GCGTGATCAAGCCGTCCAA 61.033 57.895 21.32 0.00 0.00 3.53
683 690 2.434185 GCGTGATCAAGCCGTCCA 60.434 61.111 21.32 0.00 0.00 4.02
684 691 1.815421 ATGCGTGATCAAGCCGTCC 60.815 57.895 27.29 3.97 34.90 4.79
685 692 1.083806 TCATGCGTGATCAAGCCGTC 61.084 55.000 27.29 10.38 34.90 4.79
686 693 0.462581 ATCATGCGTGATCAAGCCGT 60.463 50.000 27.29 15.31 41.16 5.68
687 694 2.314256 ATCATGCGTGATCAAGCCG 58.686 52.632 27.29 19.28 41.16 5.52
695 702 2.106074 GCCGTTGGATCATGCGTGA 61.106 57.895 11.83 11.83 39.04 4.35
696 703 2.404789 GCCGTTGGATCATGCGTG 59.595 61.111 0.00 0.00 0.00 5.34
697 704 3.195002 CGCCGTTGGATCATGCGT 61.195 61.111 0.00 0.00 40.33 5.24
699 706 4.596180 CGCGCCGTTGGATCATGC 62.596 66.667 0.00 0.00 0.00 4.06
700 707 4.596180 GCGCGCCGTTGGATCATG 62.596 66.667 23.24 0.00 0.00 3.07
726 733 1.066858 GGCTGATTTCCTGACTCGTCA 60.067 52.381 0.00 0.00 38.06 4.35
727 734 1.646189 GGCTGATTTCCTGACTCGTC 58.354 55.000 0.00 0.00 0.00 4.20
728 735 0.250513 GGGCTGATTTCCTGACTCGT 59.749 55.000 0.00 0.00 0.00 4.18
729 736 0.807667 CGGGCTGATTTCCTGACTCG 60.808 60.000 0.00 0.00 31.56 4.18
730 737 0.250513 ACGGGCTGATTTCCTGACTC 59.749 55.000 0.00 0.00 34.13 3.36
731 738 0.693049 AACGGGCTGATTTCCTGACT 59.307 50.000 0.00 0.00 34.13 3.41
732 739 0.804989 CAACGGGCTGATTTCCTGAC 59.195 55.000 0.00 0.00 34.13 3.51
733 740 0.690192 TCAACGGGCTGATTTCCTGA 59.310 50.000 0.00 0.00 34.13 3.86
734 741 1.755179 ATCAACGGGCTGATTTCCTG 58.245 50.000 0.00 0.00 31.84 3.86
735 742 2.514458 AATCAACGGGCTGATTTCCT 57.486 45.000 0.00 0.00 42.16 3.36
739 746 3.575965 GTTGAAATCAACGGGCTGATT 57.424 42.857 10.26 0.00 45.82 2.57
748 755 9.389522 TCCCTATGGAAAAGCGTTGAAATCAAC 62.390 40.741 14.77 14.77 44.09 3.18
749 756 5.336372 CCCTATGGAAAAGCGTTGAAATCAA 60.336 40.000 0.00 0.00 0.00 2.57
750 757 4.157656 CCCTATGGAAAAGCGTTGAAATCA 59.842 41.667 0.00 0.00 0.00 2.57
751 758 4.398044 TCCCTATGGAAAAGCGTTGAAATC 59.602 41.667 0.00 0.00 37.86 2.17
752 759 4.340617 TCCCTATGGAAAAGCGTTGAAAT 58.659 39.130 0.00 0.00 37.86 2.17
753 760 3.757270 TCCCTATGGAAAAGCGTTGAAA 58.243 40.909 0.00 0.00 37.86 2.69
754 761 3.426787 TCCCTATGGAAAAGCGTTGAA 57.573 42.857 0.00 0.00 37.86 2.69
765 772 4.013728 CGGTCAAAACATTTCCCTATGGA 58.986 43.478 0.00 0.00 39.54 3.41
766 773 4.013728 TCGGTCAAAACATTTCCCTATGG 58.986 43.478 0.00 0.00 0.00 2.74
767 774 4.438744 GCTCGGTCAAAACATTTCCCTATG 60.439 45.833 0.00 0.00 0.00 2.23
768 775 3.694566 GCTCGGTCAAAACATTTCCCTAT 59.305 43.478 0.00 0.00 0.00 2.57
769 776 3.078837 GCTCGGTCAAAACATTTCCCTA 58.921 45.455 0.00 0.00 0.00 3.53
777 784 2.571212 ACTGATTGCTCGGTCAAAACA 58.429 42.857 0.00 0.00 36.14 2.83
840 847 1.481056 AAACCTGTAGTCCGGCTGCT 61.481 55.000 13.26 6.84 0.00 4.24
850 857 0.242825 TCGAGCGGTCAAACCTGTAG 59.757 55.000 15.89 0.00 35.66 2.74
852 859 0.389948 GATCGAGCGGTCAAACCTGT 60.390 55.000 15.89 0.00 35.66 4.00
864 871 4.499183 CCTGGGTATTAATCAGATCGAGC 58.501 47.826 0.00 0.00 0.00 5.03
872 879 1.142060 CCGTGCCCTGGGTATTAATCA 59.858 52.381 15.56 0.00 0.00 2.57
910 917 3.257561 CGCGCAGGAGTCGGAATG 61.258 66.667 8.75 0.00 0.00 2.67
925 932 2.355837 TTGAGAGTGTCCGTGCGC 60.356 61.111 0.00 0.00 0.00 6.09
932 939 1.346068 AGCTCCCAAGTTGAGAGTGTC 59.654 52.381 15.00 0.12 31.26 3.67
935 942 1.349357 GGAAGCTCCCAAGTTGAGAGT 59.651 52.381 15.00 0.00 31.26 3.24
941 948 2.306219 GGAACTAGGAAGCTCCCAAGTT 59.694 50.000 14.74 14.74 42.52 2.66
942 949 1.909986 GGAACTAGGAAGCTCCCAAGT 59.090 52.381 0.00 0.00 37.19 3.16
943 950 1.909302 TGGAACTAGGAAGCTCCCAAG 59.091 52.381 0.00 0.00 37.20 3.61
944 951 2.038863 TGGAACTAGGAAGCTCCCAA 57.961 50.000 0.00 0.00 37.20 4.12
945 952 2.119495 GATGGAACTAGGAAGCTCCCA 58.881 52.381 0.00 0.00 37.20 4.37
946 953 1.418264 GGATGGAACTAGGAAGCTCCC 59.582 57.143 0.00 0.00 37.20 4.30
947 954 1.069358 CGGATGGAACTAGGAAGCTCC 59.931 57.143 0.00 0.00 38.31 4.70
948 955 1.757699 ACGGATGGAACTAGGAAGCTC 59.242 52.381 0.00 0.00 0.00 4.09
956 963 1.483415 GTTGGCCTACGGATGGAACTA 59.517 52.381 3.32 0.00 0.00 2.24
966 973 2.663520 TGTGCGTGTTGGCCTACG 60.664 61.111 18.95 18.95 42.79 3.51
968 975 2.031919 CCTGTGCGTGTTGGCCTA 59.968 61.111 3.32 0.00 0.00 3.93
972 979 1.078709 CATAGACCTGTGCGTGTTGG 58.921 55.000 0.00 0.00 0.00 3.77
993 1000 2.586425 TGCAGATTTTATAGCCTGGCC 58.414 47.619 16.57 0.00 0.00 5.36
996 1003 3.438087 CGGGATGCAGATTTTATAGCCTG 59.562 47.826 0.00 0.00 0.00 4.85
1072 1095 3.034635 GAGAGATCAAGAGGGCTTGGTA 58.965 50.000 5.87 0.00 45.25 3.25
1074 1097 3.535368 TCGAGAGATCAAGAGGGCTTGG 61.535 54.545 5.87 0.00 43.05 3.61
1127 1160 1.735973 CGTGGATGCTCCGATCAGA 59.264 57.895 0.00 0.00 40.17 3.27
1139 1172 2.281070 GCCATGGATCGCGTGGAT 60.281 61.111 18.40 0.00 38.35 3.41
1192 1225 3.177194 TATTCATCCAGGGGCGCCG 62.177 63.158 22.54 6.52 0.00 6.46
1202 1235 3.814842 TCATCAACATGCCGTATTCATCC 59.185 43.478 0.00 0.00 0.00 3.51
1205 1238 4.273235 GTCATCATCAACATGCCGTATTCA 59.727 41.667 0.00 0.00 0.00 2.57
1207 1240 3.565482 GGTCATCATCAACATGCCGTATT 59.435 43.478 0.00 0.00 0.00 1.89
1225 1261 1.403814 CTTGATCGCCCTAGAGGTCA 58.596 55.000 0.00 0.00 38.26 4.02
1226 1262 0.032815 GCTTGATCGCCCTAGAGGTC 59.967 60.000 0.00 0.00 38.26 3.85
1227 1263 1.403687 GGCTTGATCGCCCTAGAGGT 61.404 60.000 0.33 0.00 44.41 3.85
1239 1275 2.045926 GGACACCAGCGGCTTGAT 60.046 61.111 8.20 0.00 0.00 2.57
1298 1334 4.517815 TTCCGGGCGTACGCATCC 62.518 66.667 37.99 29.26 44.11 3.51
1311 1347 1.661341 CAGAATCCAGGCTTCTTCCG 58.339 55.000 2.51 0.00 30.60 4.30
1356 1392 3.760035 CGCCAGCTCGTACCCAGT 61.760 66.667 0.00 0.00 0.00 4.00
1407 1443 6.730960 AATCATTTTTCATGATTGGTGCAC 57.269 33.333 8.80 8.80 44.39 4.57
1469 1511 7.687941 ATACAGATCAAATGAAAGAACCGTT 57.312 32.000 0.00 0.00 0.00 4.44
1571 1617 7.648908 TGACTCATTTTTGTCAAAGTTATGCAG 59.351 33.333 0.00 6.59 39.82 4.41
1598 1644 7.919621 GGAGTATATACACTTAATATGCGACCC 59.080 40.741 15.18 0.00 30.09 4.46
1617 1663 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
1618 1664 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
1619 1665 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1620 1666 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1621 1667 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1622 1668 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1623 1669 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1624 1670 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1625 1671 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1626 1672 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1627 1673 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1628 1674 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1629 1675 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1630 1676 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1631 1677 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1632 1678 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1635 1681 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
1636 1682 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
1637 1683 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
1638 1684 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
1639 1685 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
1640 1686 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
1641 1687 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
1642 1688 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
1643 1689 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
1659 1705 9.892130 AGCTTAATACAAATTTGTACTAGAGCT 57.108 29.630 30.45 30.45 45.47 4.09
1668 1714 8.850156 AGTGTCTTGAGCTTAATACAAATTTGT 58.150 29.630 25.99 25.99 44.86 2.83
1669 1715 9.683069 AAGTGTCTTGAGCTTAATACAAATTTG 57.317 29.630 16.67 16.67 0.00 2.32
1680 1726 8.922676 CGTCTTAAAATAAGTGTCTTGAGCTTA 58.077 33.333 0.00 0.00 0.00 3.09
1681 1727 7.095187 CCGTCTTAAAATAAGTGTCTTGAGCTT 60.095 37.037 0.00 0.00 0.00 3.74
1682 1728 6.369065 CCGTCTTAAAATAAGTGTCTTGAGCT 59.631 38.462 0.00 0.00 0.00 4.09
1683 1729 6.367969 TCCGTCTTAAAATAAGTGTCTTGAGC 59.632 38.462 0.00 0.00 0.00 4.26
1684 1730 7.063544 CCTCCGTCTTAAAATAAGTGTCTTGAG 59.936 40.741 0.00 0.00 0.00 3.02
1685 1731 6.872020 CCTCCGTCTTAAAATAAGTGTCTTGA 59.128 38.462 0.00 0.00 0.00 3.02
1686 1732 6.092259 CCCTCCGTCTTAAAATAAGTGTCTTG 59.908 42.308 0.00 0.00 0.00 3.02
1687 1733 6.013984 TCCCTCCGTCTTAAAATAAGTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
1688 1734 5.482878 TCCCTCCGTCTTAAAATAAGTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
1689 1735 5.727434 TCCCTCCGTCTTAAAATAAGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
1690 1736 5.247792 ACTCCCTCCGTCTTAAAATAAGTGT 59.752 40.000 0.00 0.00 0.00 3.55
1691 1737 5.731591 ACTCCCTCCGTCTTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
1692 1738 7.672122 ATACTCCCTCCGTCTTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1700 1746 9.624373 GTGATATATTATACTCCCTCCGTCTTA 57.376 37.037 0.00 0.00 0.00 2.10
1701 1747 7.560626 GGTGATATATTATACTCCCTCCGTCTT 59.439 40.741 0.00 0.00 0.00 3.01
1702 1748 7.061688 GGTGATATATTATACTCCCTCCGTCT 58.938 42.308 0.00 0.00 0.00 4.18
1703 1749 7.061688 AGGTGATATATTATACTCCCTCCGTC 58.938 42.308 0.00 0.00 0.00 4.79
1704 1750 6.982899 AGGTGATATATTATACTCCCTCCGT 58.017 40.000 0.00 0.00 0.00 4.69
1705 1751 7.899648 AAGGTGATATATTATACTCCCTCCG 57.100 40.000 0.00 0.00 0.00 4.63
1733 1779 7.092891 ACCACAGGATAGATAATCAAAGACACA 60.093 37.037 0.00 0.00 36.20 3.72
1745 1791 4.082190 GCATAGCGAACCACAGGATAGATA 60.082 45.833 0.00 0.00 0.00 1.98
1748 1794 2.408050 GCATAGCGAACCACAGGATAG 58.592 52.381 0.00 0.00 0.00 2.08
1750 1796 0.179045 GGCATAGCGAACCACAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
1751 1797 1.220749 GGCATAGCGAACCACAGGA 59.779 57.895 0.00 0.00 0.00 3.86
1752 1798 0.464373 ATGGCATAGCGAACCACAGG 60.464 55.000 0.00 0.00 35.99 4.00
1753 1799 2.238942 TATGGCATAGCGAACCACAG 57.761 50.000 2.32 0.00 35.99 3.66
1754 1800 2.103941 TCATATGGCATAGCGAACCACA 59.896 45.455 13.39 0.00 35.99 4.17
1756 1802 3.138304 GTTCATATGGCATAGCGAACCA 58.862 45.455 26.75 7.84 37.99 3.67
1757 1803 2.157668 CGTTCATATGGCATAGCGAACC 59.842 50.000 28.75 18.99 32.04 3.62
1758 1804 3.057019 TCGTTCATATGGCATAGCGAAC 58.943 45.455 26.99 26.99 32.22 3.95
1759 1805 3.378911 TCGTTCATATGGCATAGCGAA 57.621 42.857 13.39 14.18 0.00 4.70
1760 1806 3.592898 ATCGTTCATATGGCATAGCGA 57.407 42.857 20.10 20.10 0.00 4.93
1761 1807 4.083855 ACAAATCGTTCATATGGCATAGCG 60.084 41.667 13.39 13.48 0.00 4.26
1762 1808 5.149273 CACAAATCGTTCATATGGCATAGC 58.851 41.667 13.39 2.78 0.00 2.97
1763 1809 6.138088 CACACAAATCGTTCATATGGCATAG 58.862 40.000 13.39 5.61 0.00 2.23
1764 1810 5.008514 CCACACAAATCGTTCATATGGCATA 59.991 40.000 10.07 10.07 0.00 3.14
1765 1811 4.202040 CCACACAAATCGTTCATATGGCAT 60.202 41.667 4.88 4.88 0.00 4.40
1766 1812 3.128415 CCACACAAATCGTTCATATGGCA 59.872 43.478 2.13 0.00 0.00 4.92
1767 1813 3.694734 CCACACAAATCGTTCATATGGC 58.305 45.455 2.13 0.00 0.00 4.40
1768 1814 3.128415 TGCCACACAAATCGTTCATATGG 59.872 43.478 2.13 0.00 0.00 2.74
1769 1815 4.097714 GTGCCACACAAATCGTTCATATG 58.902 43.478 0.00 0.00 34.08 1.78
1770 1816 4.009675 AGTGCCACACAAATCGTTCATAT 58.990 39.130 0.00 0.00 36.74 1.78
1771 1817 3.407698 AGTGCCACACAAATCGTTCATA 58.592 40.909 0.00 0.00 36.74 2.15
1781 1827 1.876799 CAATTACGGAGTGCCACACAA 59.123 47.619 0.00 0.00 45.73 3.33
1820 1866 1.374378 TGCGTACCGATGCCGAAAA 60.374 52.632 0.00 0.00 36.70 2.29
1821 1867 2.095847 GTGCGTACCGATGCCGAAA 61.096 57.895 0.00 0.00 36.70 3.46
1822 1868 1.655885 TAGTGCGTACCGATGCCGAA 61.656 55.000 0.00 0.00 36.70 4.30
1823 1869 2.055310 CTAGTGCGTACCGATGCCGA 62.055 60.000 0.00 0.00 36.70 5.54
1824 1870 1.657487 CTAGTGCGTACCGATGCCG 60.657 63.158 0.00 0.00 36.70 5.69
1825 1871 1.949631 GCTAGTGCGTACCGATGCC 60.950 63.158 0.00 0.00 36.70 4.40
1826 1872 0.935366 GAGCTAGTGCGTACCGATGC 60.935 60.000 0.00 0.00 45.42 3.91
1827 1873 0.657659 CGAGCTAGTGCGTACCGATG 60.658 60.000 0.00 0.00 45.42 3.84
1828 1874 1.647629 CGAGCTAGTGCGTACCGAT 59.352 57.895 0.00 0.00 45.42 4.18
1829 1875 2.466982 CCGAGCTAGTGCGTACCGA 61.467 63.158 0.00 0.00 45.42 4.69
1830 1876 2.024305 CCGAGCTAGTGCGTACCG 59.976 66.667 0.00 0.00 45.42 4.02
1831 1877 2.278661 GCCGAGCTAGTGCGTACC 60.279 66.667 0.00 0.00 45.42 3.34
1832 1878 1.872679 GTGCCGAGCTAGTGCGTAC 60.873 63.158 0.00 0.00 45.42 3.67
1833 1879 2.488355 GTGCCGAGCTAGTGCGTA 59.512 61.111 0.00 0.00 45.42 4.42
1834 1880 4.436998 GGTGCCGAGCTAGTGCGT 62.437 66.667 0.00 0.00 45.42 5.24
1835 1881 4.435436 TGGTGCCGAGCTAGTGCG 62.435 66.667 0.00 0.00 45.42 5.34
1836 1882 2.815647 GTGGTGCCGAGCTAGTGC 60.816 66.667 0.00 0.00 40.05 4.40
1837 1883 1.738099 GTGTGGTGCCGAGCTAGTG 60.738 63.158 0.00 0.00 0.00 2.74
1838 1884 2.657237 GTGTGGTGCCGAGCTAGT 59.343 61.111 0.00 0.00 0.00 2.57
1839 1885 2.125512 GGTGTGGTGCCGAGCTAG 60.126 66.667 0.00 0.00 0.00 3.42
1847 1893 2.672996 AGGCATTCGGTGTGGTGC 60.673 61.111 0.00 0.00 36.88 5.01
1848 1894 1.003355 AGAGGCATTCGGTGTGGTG 60.003 57.895 0.00 0.00 0.00 4.17
1849 1895 1.296715 GAGAGGCATTCGGTGTGGT 59.703 57.895 0.00 0.00 0.00 4.16
1850 1896 1.450312 GGAGAGGCATTCGGTGTGG 60.450 63.158 0.00 0.00 0.00 4.17
1851 1897 1.450312 GGGAGAGGCATTCGGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
1852 1898 1.613630 AGGGAGAGGCATTCGGTGT 60.614 57.895 0.00 0.00 0.00 4.16
1853 1899 1.144936 GAGGGAGAGGCATTCGGTG 59.855 63.158 0.00 0.00 0.00 4.94
1854 1900 1.002274 AGAGGGAGAGGCATTCGGT 59.998 57.895 0.00 0.00 0.00 4.69
1855 1901 1.745264 GAGAGGGAGAGGCATTCGG 59.255 63.158 0.00 0.00 0.00 4.30
1856 1902 1.361993 CGAGAGGGAGAGGCATTCG 59.638 63.158 0.00 0.00 0.00 3.34
1857 1903 1.068921 GCGAGAGGGAGAGGCATTC 59.931 63.158 0.00 0.00 0.00 2.67
1858 1904 1.382420 AGCGAGAGGGAGAGGCATT 60.382 57.895 0.00 0.00 0.00 3.56
2067 2181 4.147449 TGCTCGCACCGGATCCAG 62.147 66.667 9.46 2.18 0.00 3.86
2081 2195 1.606531 GCCATCTTCCACTCCTGCT 59.393 57.895 0.00 0.00 0.00 4.24
2116 2260 0.392998 ACGGCCGCAAATCTCATCTT 60.393 50.000 28.58 0.00 0.00 2.40
2145 2289 1.195115 CCCTTCCTCGTTGGATCTCA 58.805 55.000 0.00 0.00 45.68 3.27
2257 2401 1.666700 CCAAATTACGAATTCGGCCGA 59.333 47.619 27.28 27.28 44.95 5.54
2271 2415 3.577334 TTCCGCCCTCGCCCAAATT 62.577 57.895 0.00 0.00 0.00 1.82
2291 2435 2.736682 CGCGGCTCCGTCGATTTTT 61.737 57.895 16.04 0.00 42.09 1.94
2320 2464 0.749049 CCGAGGATGCACTCTCATCA 59.251 55.000 15.61 0.00 43.44 3.07
2524 2668 2.689983 GCCCCTACTGGATCAAACAATG 59.310 50.000 0.00 0.00 35.39 2.82
2534 2678 4.432316 AGTTTAGTTTAGCCCCTACTGGA 58.568 43.478 0.00 0.00 35.39 3.86
2545 2689 5.227908 TCTCCGAGCACAAGTTTAGTTTAG 58.772 41.667 0.00 0.00 0.00 1.85
2552 2696 1.603172 CGACTCTCCGAGCACAAGTTT 60.603 52.381 0.00 0.00 32.04 2.66
2554 2698 1.173444 ACGACTCTCCGAGCACAAGT 61.173 55.000 0.00 0.00 32.04 3.16
2569 2713 1.850441 CCGTCGATGGTGATTTACGAC 59.150 52.381 15.98 0.00 46.01 4.34
2594 2738 2.833338 CCCAATCTCCAGCATTTTGGAA 59.167 45.455 1.68 0.00 46.20 3.53
2639 2783 1.847798 TATCCCGCCCAACTGCAACT 61.848 55.000 0.00 0.00 0.00 3.16
2641 2785 0.033601 ATTATCCCGCCCAACTGCAA 60.034 50.000 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.