Multiple sequence alignment - TraesCS4A01G417000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G417000 chr4A 100.000 3041 0 0 1 3041 686528432 686531472 0.000000e+00 5616
1 TraesCS4A01G417000 chr4A 81.150 313 34 7 2736 3041 642907270 642906976 8.480000e-56 228
2 TraesCS4A01G417000 chr4A 79.070 258 40 9 32 282 513976174 513976424 6.750000e-37 165
3 TraesCS4A01G417000 chr4A 86.957 138 15 2 2907 3041 686578436 686578573 5.250000e-33 152
4 TraesCS4A01G417000 chr7D 88.162 2340 140 53 790 3041 38077582 38075292 0.000000e+00 2660
5 TraesCS4A01G417000 chr7D 88.922 334 29 3 421 747 38078129 38077797 3.650000e-109 405
6 TraesCS4A01G417000 chr7D 80.287 487 44 25 2586 3041 38196747 38197212 1.360000e-83 320
7 TraesCS4A01G417000 chr7D 79.377 257 40 11 31 282 458727443 458727691 5.210000e-38 169
8 TraesCS4A01G417000 chr7A 90.575 1740 79 36 677 2383 37362098 37360411 0.000000e+00 2226
9 TraesCS4A01G417000 chr7A 86.271 1180 90 32 1494 2670 37930395 37931505 0.000000e+00 1216
10 TraesCS4A01G417000 chr7A 77.181 596 52 29 2483 3041 37360366 37359818 1.390000e-68 270
11 TraesCS4A01G417000 chr2B 79.339 242 38 10 1 235 47506248 47506012 3.140000e-35 159
12 TraesCS4A01G417000 chr7B 78.210 257 39 14 31 279 144512030 144512277 6.790000e-32 148
13 TraesCS4A01G417000 chr5B 76.817 289 48 18 1 282 608625502 608625778 8.790000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G417000 chr4A 686528432 686531472 3040 False 5616.0 5616 100.000 1 3041 1 chr4A.!!$F2 3040
1 TraesCS4A01G417000 chr7D 38075292 38078129 2837 True 1532.5 2660 88.542 421 3041 2 chr7D.!!$R1 2620
2 TraesCS4A01G417000 chr7A 37359818 37362098 2280 True 1248.0 2226 83.878 677 3041 2 chr7A.!!$R1 2364
3 TraesCS4A01G417000 chr7A 37930395 37931505 1110 False 1216.0 1216 86.271 1494 2670 1 chr7A.!!$F1 1176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 409 0.035915 GGCCTCACTCCTCTTGTTCC 60.036 60.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2481 1.153229 GAACCAGCCGTATGTCCCC 60.153 63.158 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.365370 AGGCTGAGCTCCAGGGAG 60.365 66.667 12.15 11.06 43.13 4.30
18 19 3.478274 GGCTGAGCTCCAGGGAGG 61.478 72.222 16.70 1.59 43.13 4.30
19 20 4.173924 GCTGAGCTCCAGGGAGGC 62.174 72.222 16.70 7.86 43.13 4.70
20 21 3.478274 CTGAGCTCCAGGGAGGCC 61.478 72.222 16.70 0.00 42.19 5.19
25 26 2.685380 CTCCAGGGAGGCCGACTT 60.685 66.667 7.48 0.00 38.51 3.01
26 27 2.203938 TCCAGGGAGGCCGACTTT 60.204 61.111 0.00 0.00 37.29 2.66
27 28 1.842381 CTCCAGGGAGGCCGACTTTT 61.842 60.000 7.48 0.00 38.51 2.27
28 29 1.675641 CCAGGGAGGCCGACTTTTG 60.676 63.158 0.00 0.00 0.00 2.44
29 30 1.675641 CAGGGAGGCCGACTTTTGG 60.676 63.158 0.00 0.00 0.00 3.28
30 31 1.846124 AGGGAGGCCGACTTTTGGA 60.846 57.895 0.00 0.00 0.00 3.53
31 32 1.074248 GGGAGGCCGACTTTTGGAA 59.926 57.895 0.00 0.00 0.00 3.53
32 33 0.538746 GGGAGGCCGACTTTTGGAAA 60.539 55.000 0.00 0.00 0.00 3.13
33 34 1.324383 GGAGGCCGACTTTTGGAAAA 58.676 50.000 0.00 0.00 0.00 2.29
34 35 1.893137 GGAGGCCGACTTTTGGAAAAT 59.107 47.619 0.00 0.00 0.00 1.82
35 36 2.299013 GGAGGCCGACTTTTGGAAAATT 59.701 45.455 0.00 0.00 0.00 1.82
36 37 3.244078 GGAGGCCGACTTTTGGAAAATTT 60.244 43.478 0.00 0.00 0.00 1.82
37 38 4.021807 GGAGGCCGACTTTTGGAAAATTTA 60.022 41.667 0.00 0.00 0.00 1.40
38 39 5.510009 GGAGGCCGACTTTTGGAAAATTTAA 60.510 40.000 0.00 0.00 0.00 1.52
39 40 5.919755 AGGCCGACTTTTGGAAAATTTAAA 58.080 33.333 0.00 0.00 0.00 1.52
40 41 6.350103 AGGCCGACTTTTGGAAAATTTAAAA 58.650 32.000 0.00 0.00 0.00 1.52
41 42 6.995686 AGGCCGACTTTTGGAAAATTTAAAAT 59.004 30.769 0.00 0.00 0.00 1.82
42 43 7.500892 AGGCCGACTTTTGGAAAATTTAAAATT 59.499 29.630 0.00 0.00 0.00 1.82
43 44 8.132362 GGCCGACTTTTGGAAAATTTAAAATTT 58.868 29.630 0.82 0.82 0.00 1.82
117 118 6.441093 ACATGAAGGTATAATGCACAAGTG 57.559 37.500 0.00 0.00 0.00 3.16
118 119 5.945784 ACATGAAGGTATAATGCACAAGTGT 59.054 36.000 0.00 0.00 0.00 3.55
134 135 6.189567 CACAAGTGTGTAAGTTTTTAGGACG 58.810 40.000 3.17 0.00 40.96 4.79
135 136 6.036300 CACAAGTGTGTAAGTTTTTAGGACGA 59.964 38.462 3.17 0.00 40.96 4.20
136 137 6.594937 ACAAGTGTGTAAGTTTTTAGGACGAA 59.405 34.615 0.00 0.00 35.72 3.85
137 138 7.119553 ACAAGTGTGTAAGTTTTTAGGACGAAA 59.880 33.333 0.00 0.00 35.72 3.46
138 139 7.614124 AGTGTGTAAGTTTTTAGGACGAAAA 57.386 32.000 0.00 0.00 0.00 2.29
139 140 7.466805 AGTGTGTAAGTTTTTAGGACGAAAAC 58.533 34.615 0.00 4.72 43.73 2.43
140 141 7.119553 AGTGTGTAAGTTTTTAGGACGAAAACA 59.880 33.333 13.05 0.10 45.06 2.83
141 142 7.911727 GTGTGTAAGTTTTTAGGACGAAAACAT 59.088 33.333 13.05 5.62 45.06 2.71
142 143 8.460428 TGTGTAAGTTTTTAGGACGAAAACATT 58.540 29.630 13.05 8.05 45.06 2.71
143 144 8.739461 GTGTAAGTTTTTAGGACGAAAACATTG 58.261 33.333 13.05 0.00 45.06 2.82
144 145 8.675504 TGTAAGTTTTTAGGACGAAAACATTGA 58.324 29.630 13.05 0.00 45.06 2.57
145 146 9.505995 GTAAGTTTTTAGGACGAAAACATTGAA 57.494 29.630 13.05 0.00 45.06 2.69
146 147 8.989653 AAGTTTTTAGGACGAAAACATTGAAA 57.010 26.923 13.05 0.00 45.06 2.69
147 148 9.594478 AAGTTTTTAGGACGAAAACATTGAAAT 57.406 25.926 13.05 0.00 45.06 2.17
148 149 9.030301 AGTTTTTAGGACGAAAACATTGAAATG 57.970 29.630 13.05 1.45 45.06 2.32
149 150 9.026074 GTTTTTAGGACGAAAACATTGAAATGA 57.974 29.630 9.94 0.00 43.19 2.57
150 151 8.795786 TTTTAGGACGAAAACATTGAAATGAG 57.204 30.769 9.94 0.00 39.67 2.90
151 152 7.504924 TTAGGACGAAAACATTGAAATGAGT 57.495 32.000 9.94 2.37 39.67 3.41
152 153 5.762045 AGGACGAAAACATTGAAATGAGTG 58.238 37.500 9.94 0.00 39.67 3.51
153 154 5.299279 AGGACGAAAACATTGAAATGAGTGT 59.701 36.000 9.94 1.57 39.67 3.55
154 155 5.977129 GGACGAAAACATTGAAATGAGTGTT 59.023 36.000 9.94 0.00 39.67 3.32
155 156 6.074888 GGACGAAAACATTGAAATGAGTGTTG 60.075 38.462 9.94 0.18 39.67 3.33
156 157 6.329496 ACGAAAACATTGAAATGAGTGTTGT 58.671 32.000 9.94 0.71 39.67 3.32
157 158 6.253298 ACGAAAACATTGAAATGAGTGTTGTG 59.747 34.615 9.94 0.00 39.67 3.33
158 159 5.971895 AAACATTGAAATGAGTGTTGTGC 57.028 34.783 9.94 0.00 39.67 4.57
159 160 4.652421 ACATTGAAATGAGTGTTGTGCA 57.348 36.364 9.94 0.00 39.67 4.57
160 161 5.008619 ACATTGAAATGAGTGTTGTGCAA 57.991 34.783 9.94 0.00 39.67 4.08
161 162 5.417811 ACATTGAAATGAGTGTTGTGCAAA 58.582 33.333 9.94 0.00 39.67 3.68
162 163 5.873712 ACATTGAAATGAGTGTTGTGCAAAA 59.126 32.000 9.94 0.00 39.67 2.44
163 164 6.370994 ACATTGAAATGAGTGTTGTGCAAAAA 59.629 30.769 9.94 0.00 39.67 1.94
189 190 6.979701 AAACAAATCGTAGCCTTTTTAACG 57.020 33.333 0.00 0.00 36.71 3.18
190 191 4.469552 ACAAATCGTAGCCTTTTTAACGC 58.530 39.130 0.00 0.00 35.40 4.84
191 192 4.023878 ACAAATCGTAGCCTTTTTAACGCA 60.024 37.500 0.00 0.00 35.40 5.24
192 193 4.752661 AATCGTAGCCTTTTTAACGCAA 57.247 36.364 0.00 0.00 35.40 4.85
194 195 2.481185 TCGTAGCCTTTTTAACGCAAGG 59.519 45.455 3.71 3.71 42.39 3.61
195 196 2.224784 CGTAGCCTTTTTAACGCAAGGT 59.775 45.455 8.43 1.05 41.63 3.50
196 197 3.432933 CGTAGCCTTTTTAACGCAAGGTA 59.567 43.478 8.43 0.37 41.63 3.08
197 198 4.093850 CGTAGCCTTTTTAACGCAAGGTAT 59.906 41.667 8.43 2.64 40.71 2.73
198 199 5.291614 CGTAGCCTTTTTAACGCAAGGTATA 59.708 40.000 8.43 1.94 40.71 1.47
199 200 5.556355 AGCCTTTTTAACGCAAGGTATAC 57.444 39.130 8.43 0.00 40.71 1.47
200 201 5.250982 AGCCTTTTTAACGCAAGGTATACT 58.749 37.500 2.25 0.00 40.71 2.12
201 202 5.123344 AGCCTTTTTAACGCAAGGTATACTG 59.877 40.000 2.25 0.00 40.71 2.74
202 203 5.106436 GCCTTTTTAACGCAAGGTATACTGT 60.106 40.000 2.25 0.00 40.71 3.55
203 204 6.569035 GCCTTTTTAACGCAAGGTATACTGTT 60.569 38.462 2.25 3.63 40.71 3.16
204 205 7.364970 CCTTTTTAACGCAAGGTATACTGTTT 58.635 34.615 2.25 0.00 40.71 2.83
205 206 8.505625 CCTTTTTAACGCAAGGTATACTGTTTA 58.494 33.333 2.25 0.00 40.71 2.01
208 209 7.775397 TTAACGCAAGGTATACTGTTTATCC 57.225 36.000 2.25 0.00 40.71 2.59
209 210 5.609533 ACGCAAGGTATACTGTTTATCCT 57.390 39.130 2.25 0.00 46.39 3.24
210 211 5.985911 ACGCAAGGTATACTGTTTATCCTT 58.014 37.500 2.25 0.00 46.39 3.36
211 212 6.412214 ACGCAAGGTATACTGTTTATCCTTT 58.588 36.000 2.25 0.00 46.39 3.11
212 213 6.537660 ACGCAAGGTATACTGTTTATCCTTTC 59.462 38.462 2.25 5.23 46.39 2.62
213 214 6.537301 CGCAAGGTATACTGTTTATCCTTTCA 59.463 38.462 2.25 0.00 33.73 2.69
214 215 7.254455 CGCAAGGTATACTGTTTATCCTTTCAG 60.254 40.741 2.25 0.00 33.73 3.02
215 216 7.012421 GCAAGGTATACTGTTTATCCTTTCAGG 59.988 40.741 2.25 0.00 33.73 3.86
216 217 6.592870 AGGTATACTGTTTATCCTTTCAGGC 58.407 40.000 2.25 0.00 34.61 4.85
217 218 5.763698 GGTATACTGTTTATCCTTTCAGGCC 59.236 44.000 2.25 0.00 34.61 5.19
218 219 3.806949 ACTGTTTATCCTTTCAGGCCA 57.193 42.857 5.01 0.00 34.61 5.36
219 220 4.322057 ACTGTTTATCCTTTCAGGCCAT 57.678 40.909 5.01 0.00 34.61 4.40
220 221 4.019174 ACTGTTTATCCTTTCAGGCCATG 58.981 43.478 5.01 0.00 34.61 3.66
221 222 4.263905 ACTGTTTATCCTTTCAGGCCATGA 60.264 41.667 5.01 2.70 34.61 3.07
222 223 4.671831 TGTTTATCCTTTCAGGCCATGAA 58.328 39.130 5.01 9.59 46.31 2.57
232 233 5.549742 TTCAGGCCATGAATTTGTCTTTT 57.450 34.783 5.01 0.00 43.09 2.27
233 234 5.549742 TCAGGCCATGAATTTGTCTTTTT 57.450 34.783 5.01 0.00 34.02 1.94
255 256 7.899178 TTTTCTCGTACAGATAGCATTTTGA 57.101 32.000 0.00 0.00 0.00 2.69
256 257 7.525688 TTTCTCGTACAGATAGCATTTTGAG 57.474 36.000 0.00 0.00 0.00 3.02
257 258 6.451064 TCTCGTACAGATAGCATTTTGAGA 57.549 37.500 0.00 0.00 0.00 3.27
258 259 7.043961 TCTCGTACAGATAGCATTTTGAGAT 57.956 36.000 0.00 0.00 0.00 2.75
259 260 8.166422 TCTCGTACAGATAGCATTTTGAGATA 57.834 34.615 0.00 0.00 0.00 1.98
260 261 8.797438 TCTCGTACAGATAGCATTTTGAGATAT 58.203 33.333 0.00 0.00 0.00 1.63
261 262 9.416794 CTCGTACAGATAGCATTTTGAGATATT 57.583 33.333 0.00 0.00 0.00 1.28
262 263 9.764363 TCGTACAGATAGCATTTTGAGATATTT 57.236 29.630 0.00 0.00 0.00 1.40
301 302 9.814507 TTACACATAAAACACATAACATCGTTC 57.185 29.630 0.00 0.00 0.00 3.95
302 303 7.012943 ACACATAAAACACATAACATCGTTCG 58.987 34.615 0.00 0.00 0.00 3.95
303 304 7.012943 CACATAAAACACATAACATCGTTCGT 58.987 34.615 0.00 0.00 0.00 3.85
304 305 7.213706 CACATAAAACACATAACATCGTTCGTC 59.786 37.037 0.00 0.00 0.00 4.20
305 306 5.660629 AAAACACATAACATCGTTCGTCA 57.339 34.783 0.00 0.00 0.00 4.35
306 307 4.640805 AACACATAACATCGTTCGTCAC 57.359 40.909 0.00 0.00 0.00 3.67
317 318 3.492725 CGTTCGTCACGTGTACATTTT 57.507 42.857 16.51 0.00 44.49 1.82
318 319 3.852574 CGTTCGTCACGTGTACATTTTT 58.147 40.909 16.51 0.00 44.49 1.94
375 376 2.200373 AAAACCGTCCTCCATGAAGG 57.800 50.000 0.00 0.00 39.47 3.46
376 377 4.561155 ACCGTCCTCCATGAAGGT 57.439 55.556 0.00 0.00 41.48 3.50
377 378 0.613777 AACCGTCCTCCATGAAGGTC 59.386 55.000 0.00 0.00 44.81 3.85
378 379 1.141881 CCGTCCTCCATGAAGGTCG 59.858 63.158 10.54 10.54 44.31 4.79
379 380 1.320344 CCGTCCTCCATGAAGGTCGA 61.320 60.000 18.48 0.00 46.56 4.20
380 381 0.101399 CGTCCTCCATGAAGGTCGAG 59.899 60.000 12.04 0.00 46.56 4.04
381 382 1.475403 GTCCTCCATGAAGGTCGAGA 58.525 55.000 0.00 0.00 37.69 4.04
382 383 1.407258 GTCCTCCATGAAGGTCGAGAG 59.593 57.143 0.00 0.00 37.69 3.20
383 384 0.103937 CCTCCATGAAGGTCGAGAGC 59.896 60.000 0.00 0.00 39.02 4.09
384 385 0.103937 CTCCATGAAGGTCGAGAGCC 59.896 60.000 0.00 0.00 39.02 4.70
385 386 0.614697 TCCATGAAGGTCGAGAGCCA 60.615 55.000 0.00 0.00 39.02 4.75
386 387 0.250234 CCATGAAGGTCGAGAGCCAA 59.750 55.000 0.00 0.00 0.00 4.52
387 388 1.339055 CCATGAAGGTCGAGAGCCAAA 60.339 52.381 0.00 0.00 0.00 3.28
388 389 2.426522 CATGAAGGTCGAGAGCCAAAA 58.573 47.619 0.00 0.00 0.00 2.44
389 390 2.169832 TGAAGGTCGAGAGCCAAAAG 57.830 50.000 0.00 0.00 0.00 2.27
390 391 1.270839 TGAAGGTCGAGAGCCAAAAGG 60.271 52.381 0.00 0.00 0.00 3.11
391 392 0.606673 AAGGTCGAGAGCCAAAAGGC 60.607 55.000 0.00 0.00 0.00 4.35
392 393 2.041115 GGTCGAGAGCCAAAAGGCC 61.041 63.158 2.33 0.00 35.12 5.19
393 394 1.003233 GTCGAGAGCCAAAAGGCCT 60.003 57.895 0.00 0.00 35.12 5.19
394 395 1.021920 GTCGAGAGCCAAAAGGCCTC 61.022 60.000 5.23 8.56 35.12 4.70
395 396 1.003355 CGAGAGCCAAAAGGCCTCA 60.003 57.895 5.23 0.00 34.34 3.86
396 397 1.301677 CGAGAGCCAAAAGGCCTCAC 61.302 60.000 5.23 0.00 34.34 3.51
397 398 0.037447 GAGAGCCAAAAGGCCTCACT 59.963 55.000 5.23 0.00 34.61 3.41
398 399 0.037447 AGAGCCAAAAGGCCTCACTC 59.963 55.000 5.23 9.01 35.12 3.51
399 400 0.962855 GAGCCAAAAGGCCTCACTCC 60.963 60.000 5.23 0.00 35.12 3.85
400 401 1.075659 GCCAAAAGGCCTCACTCCT 59.924 57.895 5.23 0.00 34.90 3.69
401 402 0.962855 GCCAAAAGGCCTCACTCCTC 60.963 60.000 5.23 0.00 32.45 3.71
402 403 0.695347 CCAAAAGGCCTCACTCCTCT 59.305 55.000 5.23 0.00 32.45 3.69
403 404 1.074566 CCAAAAGGCCTCACTCCTCTT 59.925 52.381 5.23 0.00 32.45 2.85
404 405 2.157738 CAAAAGGCCTCACTCCTCTTG 58.842 52.381 5.23 0.00 32.45 3.02
405 406 1.439543 AAAGGCCTCACTCCTCTTGT 58.560 50.000 5.23 0.00 32.45 3.16
406 407 1.439543 AAGGCCTCACTCCTCTTGTT 58.560 50.000 5.23 0.00 32.45 2.83
407 408 0.980423 AGGCCTCACTCCTCTTGTTC 59.020 55.000 0.00 0.00 0.00 3.18
408 409 0.035915 GGCCTCACTCCTCTTGTTCC 60.036 60.000 0.00 0.00 0.00 3.62
409 410 0.035915 GCCTCACTCCTCTTGTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
410 411 0.615850 CCTCACTCCTCTTGTTCCCC 59.384 60.000 0.00 0.00 0.00 4.81
411 412 0.615850 CTCACTCCTCTTGTTCCCCC 59.384 60.000 0.00 0.00 0.00 5.40
412 413 0.193574 TCACTCCTCTTGTTCCCCCT 59.806 55.000 0.00 0.00 0.00 4.79
413 414 1.068121 CACTCCTCTTGTTCCCCCTT 58.932 55.000 0.00 0.00 0.00 3.95
414 415 1.425448 CACTCCTCTTGTTCCCCCTTT 59.575 52.381 0.00 0.00 0.00 3.11
415 416 2.144450 ACTCCTCTTGTTCCCCCTTTT 58.856 47.619 0.00 0.00 0.00 2.27
416 417 2.518407 ACTCCTCTTGTTCCCCCTTTTT 59.482 45.455 0.00 0.00 0.00 1.94
417 418 3.157881 CTCCTCTTGTTCCCCCTTTTTC 58.842 50.000 0.00 0.00 0.00 2.29
418 419 2.789399 TCCTCTTGTTCCCCCTTTTTCT 59.211 45.455 0.00 0.00 0.00 2.52
419 420 3.157881 CCTCTTGTTCCCCCTTTTTCTC 58.842 50.000 0.00 0.00 0.00 2.87
429 430 1.266989 CCCTTTTTCTCGAGGCAACAC 59.733 52.381 13.56 0.00 41.41 3.32
454 455 1.908066 GCGGTCGTAAAGCACAAGGG 61.908 60.000 0.00 0.00 0.00 3.95
457 458 2.433436 GGTCGTAAAGCACAAGGGATT 58.567 47.619 0.00 0.00 0.00 3.01
461 462 3.689161 TCGTAAAGCACAAGGGATTCATG 59.311 43.478 0.00 0.00 0.00 3.07
462 463 3.731867 CGTAAAGCACAAGGGATTCATGC 60.732 47.826 0.00 0.00 36.52 4.06
487 488 3.322466 CGGCCCTCCCACTTGACT 61.322 66.667 0.00 0.00 0.00 3.41
494 495 1.205893 CCTCCCACTTGACTAGCAGTC 59.794 57.143 8.75 8.75 45.26 3.51
501 502 4.067896 CACTTGACTAGCAGTCCAAATGT 58.932 43.478 11.99 2.64 44.44 2.71
506 507 4.184629 GACTAGCAGTCCAAATGTAGTGG 58.815 47.826 5.33 0.00 39.28 4.00
507 508 3.583086 ACTAGCAGTCCAAATGTAGTGGT 59.417 43.478 0.00 0.00 37.43 4.16
529 530 9.906660 GTGGTACAATCATTCATGTAAAAAGAA 57.093 29.630 0.00 0.00 44.16 2.52
553 554 3.505293 AGAGGCAAATGCTTTCACTCTTC 59.495 43.478 5.25 0.00 41.70 2.87
564 565 4.813697 GCTTTCACTCTTCTCACTGACTTT 59.186 41.667 0.00 0.00 0.00 2.66
578 579 3.988517 ACTGACTTTACTGCGAAACTAGC 59.011 43.478 0.00 0.00 0.00 3.42
582 583 3.006537 ACTTTACTGCGAAACTAGCCTCA 59.993 43.478 0.00 0.00 0.00 3.86
608 609 1.194772 GACCGTAACAGTGCAAGCTTC 59.805 52.381 0.00 0.00 0.00 3.86
619 620 3.385755 AGTGCAAGCTTCATTTTTCCACT 59.614 39.130 0.00 0.00 0.00 4.00
636 637 2.519063 TAGCCCATGCGCCCATTG 60.519 61.111 4.18 0.00 44.33 2.82
637 638 3.357444 TAGCCCATGCGCCCATTGT 62.357 57.895 4.18 0.00 44.33 2.71
663 666 5.855395 CACTGCAATCTTTCTTTACTCAAGC 59.145 40.000 0.00 0.00 31.70 4.01
714 717 3.549794 AGAATGATTGTTAGGGAGCAGC 58.450 45.455 0.00 0.00 0.00 5.25
715 718 3.054139 AGAATGATTGTTAGGGAGCAGCA 60.054 43.478 0.00 0.00 0.00 4.41
716 719 2.408271 TGATTGTTAGGGAGCAGCAG 57.592 50.000 0.00 0.00 0.00 4.24
729 739 5.424895 AGGGAGCAGCAGATAGATTATTAGG 59.575 44.000 0.00 0.00 0.00 2.69
747 757 1.666872 GAGGAACACCCCACGTTCG 60.667 63.158 0.00 0.00 43.00 3.95
748 758 2.667199 GGAACACCCCACGTTCGG 60.667 66.667 0.00 0.00 43.00 4.30
751 761 3.819877 AACACCCCACGTTCGGCTC 62.820 63.158 0.00 0.00 0.00 4.70
773 979 5.070001 TCCTTAATCCACAGACAAAACCAG 58.930 41.667 0.00 0.00 0.00 4.00
780 986 1.148273 AGACAAAACCAGAGCCGCA 59.852 52.632 0.00 0.00 0.00 5.69
799 1005 1.971695 CCGAGGGCCAAACTGTTCC 60.972 63.158 6.18 0.00 0.00 3.62
873 1083 1.332195 CACTCCACTCCACACTCTCA 58.668 55.000 0.00 0.00 0.00 3.27
874 1084 1.000283 CACTCCACTCCACACTCTCAC 60.000 57.143 0.00 0.00 0.00 3.51
910 1125 3.623060 CCATGGATTTTACACTCTCACCG 59.377 47.826 5.56 0.00 0.00 4.94
943 1158 3.306364 CCCACTCTCTATAAAGCATCCCG 60.306 52.174 0.00 0.00 0.00 5.14
968 1183 4.695928 GCCAAGAACCTCCAGTAAAGTAAG 59.304 45.833 0.00 0.00 0.00 2.34
990 1205 1.146263 GGCGACATTCCCCTCGAAT 59.854 57.895 0.00 0.00 42.18 3.34
1140 1358 1.014564 CGTCCAAGAAGTTCGAGGGC 61.015 60.000 14.24 12.27 0.00 5.19
1986 2205 1.898574 GTTCCTGGTGCAGTGGGTG 60.899 63.158 0.00 0.00 0.00 4.61
2046 2265 1.683917 CTCGACCAGCATTAGTAGCCT 59.316 52.381 0.00 0.00 0.00 4.58
2047 2266 2.101582 CTCGACCAGCATTAGTAGCCTT 59.898 50.000 0.00 0.00 0.00 4.35
2048 2267 2.500098 TCGACCAGCATTAGTAGCCTTT 59.500 45.455 0.00 0.00 0.00 3.11
2050 2269 2.356069 GACCAGCATTAGTAGCCTTTGC 59.644 50.000 0.00 0.00 37.95 3.68
2051 2270 1.331756 CCAGCATTAGTAGCCTTTGCG 59.668 52.381 0.00 0.00 44.33 4.85
2061 2282 1.154654 GCCTTTGCGTTTCGTCTCG 60.155 57.895 0.00 0.00 0.00 4.04
2117 2348 4.747931 GCGGTAGTAGTATTCCTCCCACTA 60.748 50.000 0.00 0.00 0.00 2.74
2120 2351 4.785346 AGTAGTATTCCTCCCACTACGA 57.215 45.455 0.00 0.00 45.96 3.43
2185 2424 4.171878 TCCTCCTGTATAGAGTCAGTGG 57.828 50.000 0.00 0.00 0.00 4.00
2187 2426 3.117474 CCTCCTGTATAGAGTCAGTGGGA 60.117 52.174 0.00 0.00 0.00 4.37
2224 2466 4.335647 CCGGTGAGCCCAGCTTGT 62.336 66.667 0.00 0.00 39.88 3.16
2225 2467 2.743928 CGGTGAGCCCAGCTTGTC 60.744 66.667 0.00 0.00 39.88 3.18
2227 2469 2.360475 GTGAGCCCAGCTTGTCCC 60.360 66.667 0.00 0.00 39.88 4.46
2228 2470 2.530151 TGAGCCCAGCTTGTCCCT 60.530 61.111 0.00 0.00 39.88 4.20
2229 2471 2.270527 GAGCCCAGCTTGTCCCTC 59.729 66.667 0.00 0.00 39.88 4.30
2230 2472 3.334054 AGCCCAGCTTGTCCCTCC 61.334 66.667 0.00 0.00 33.89 4.30
2231 2473 3.334054 GCCCAGCTTGTCCCTCCT 61.334 66.667 0.00 0.00 0.00 3.69
2232 2474 2.993853 CCCAGCTTGTCCCTCCTC 59.006 66.667 0.00 0.00 0.00 3.71
2233 2475 1.614824 CCCAGCTTGTCCCTCCTCT 60.615 63.158 0.00 0.00 0.00 3.69
2234 2476 1.601171 CCAGCTTGTCCCTCCTCTG 59.399 63.158 0.00 0.00 0.00 3.35
2235 2477 1.601171 CAGCTTGTCCCTCCTCTGG 59.399 63.158 0.00 0.00 0.00 3.86
2239 2481 1.908340 CTTGTCCCTCCTCTGGGCTG 61.908 65.000 0.00 0.00 46.67 4.85
2350 2603 3.781280 GCTCGGTTCGTTCGAATTTGATC 60.781 47.826 10.70 0.00 36.15 2.92
2366 2621 8.156553 CGAATTTGATCAGCATTACTACGATAC 58.843 37.037 0.00 0.00 0.00 2.24
2371 2626 6.655425 TGATCAGCATTACTACGATACTAGCT 59.345 38.462 0.00 0.00 0.00 3.32
2383 2647 6.224420 ACGATACTAGCTTGTTTGAAACAC 57.776 37.500 10.72 0.17 41.97 3.32
2388 2658 4.576463 ACTAGCTTGTTTGAAACACTGAGG 59.424 41.667 10.72 4.41 41.97 3.86
2396 2666 5.298276 TGTTTGAAACACTGAGGGTACAATC 59.702 40.000 6.66 7.97 36.25 2.67
2398 2668 4.385825 TGAAACACTGAGGGTACAATCAC 58.614 43.478 0.00 0.00 0.00 3.06
2410 2680 4.324254 GGGTACAATCACTGGAAATCTGGA 60.324 45.833 0.00 0.00 0.00 3.86
2452 2737 2.048503 GGAAGTACACGGCTGCGT 60.049 61.111 0.00 0.00 0.00 5.24
2453 2738 2.380410 GGAAGTACACGGCTGCGTG 61.380 63.158 18.29 18.29 44.56 5.34
2454 2739 3.011760 GAAGTACACGGCTGCGTGC 62.012 63.158 19.31 4.55 42.99 5.34
2533 2818 1.137872 GATCACAGGCAGGGAGTACAG 59.862 57.143 0.00 0.00 29.38 2.74
2539 2824 1.268283 GGCAGGGAGTACAGGAGCTT 61.268 60.000 0.00 0.00 0.00 3.74
2581 2880 4.626081 GTGAGCAGGTGGGCGTGT 62.626 66.667 0.00 0.00 39.27 4.49
2663 2965 0.108329 TAGCGCACTAGGCTTTCACC 60.108 55.000 11.47 0.00 41.80 4.02
2695 2998 0.820871 GTCCTTGGATCGAGCAGAGT 59.179 55.000 1.84 0.00 0.00 3.24
2697 3000 0.809241 CCTTGGATCGAGCAGAGTGC 60.809 60.000 1.84 0.00 45.46 4.40
2707 3010 2.814341 CAGAGTGCTGCTGCTCCG 60.814 66.667 17.00 7.20 40.48 4.63
2710 3013 4.694233 AGTGCTGCTGCTCCGTGG 62.694 66.667 17.00 0.00 40.48 4.94
2711 3014 4.687215 GTGCTGCTGCTCCGTGGA 62.687 66.667 17.00 0.00 40.48 4.02
2732 3043 2.280552 TGGTCACGAGTAGGCACCC 61.281 63.158 0.00 0.00 0.00 4.61
2772 3094 2.500098 TGGTATACTGTGAAGGAGCCAC 59.500 50.000 2.25 0.00 35.23 5.01
2796 3118 0.671781 GCACAGTCGAATGTCCTGCT 60.672 55.000 16.76 0.00 0.00 4.24
2808 3130 4.247380 CCTGCTCTCCCCGCCATC 62.247 72.222 0.00 0.00 0.00 3.51
2826 3155 1.003355 CATAGCTGGGCCGTATGGG 60.003 63.158 2.41 0.00 39.58 4.00
2852 3182 4.328983 GCTTTCTCCGTATCGTTTCATTCA 59.671 41.667 0.00 0.00 0.00 2.57
2854 3184 4.713824 TCTCCGTATCGTTTCATTCACT 57.286 40.909 0.00 0.00 0.00 3.41
2855 3185 5.068234 TCTCCGTATCGTTTCATTCACTT 57.932 39.130 0.00 0.00 0.00 3.16
2858 3188 4.992319 TCCGTATCGTTTCATTCACTTTGT 59.008 37.500 0.00 0.00 0.00 2.83
2863 3193 8.007716 CGTATCGTTTCATTCACTTTGTTTACT 58.992 33.333 0.00 0.00 0.00 2.24
2864 3194 9.103048 GTATCGTTTCATTCACTTTGTTTACTG 57.897 33.333 0.00 0.00 0.00 2.74
2865 3195 5.968848 TCGTTTCATTCACTTTGTTTACTGC 59.031 36.000 0.00 0.00 0.00 4.40
2899 3229 7.918076 ACACCAAGTATCCTATGGTATTATGG 58.082 38.462 0.00 0.00 45.45 2.74
2900 3230 7.516209 ACACCAAGTATCCTATGGTATTATGGT 59.484 37.037 0.00 0.00 45.45 3.55
2901 3231 8.041323 CACCAAGTATCCTATGGTATTATGGTC 58.959 40.741 0.00 0.00 45.45 4.02
2902 3232 7.737607 ACCAAGTATCCTATGGTATTATGGTCA 59.262 37.037 0.00 0.00 45.37 4.02
2903 3233 8.772250 CCAAGTATCCTATGGTATTATGGTCAT 58.228 37.037 0.00 0.00 0.00 3.06
2906 3236 8.772250 AGTATCCTATGGTATTATGGTCATTGG 58.228 37.037 0.00 0.00 35.10 3.16
2907 3237 6.387192 TCCTATGGTATTATGGTCATTGGG 57.613 41.667 0.00 0.00 34.74 4.12
2914 3244 0.470766 TATGGTCATTGGGGGCGTAC 59.529 55.000 0.00 0.00 0.00 3.67
2915 3245 1.567208 ATGGTCATTGGGGGCGTACA 61.567 55.000 0.00 0.00 0.00 2.90
2920 3250 0.746563 CATTGGGGGCGTACACGATT 60.747 55.000 5.84 0.00 43.02 3.34
2932 3262 4.786575 GCGTACACGATTCAATTTTTCCTC 59.213 41.667 5.84 0.00 43.02 3.71
2934 3264 4.783764 ACACGATTCAATTTTTCCTCCC 57.216 40.909 0.00 0.00 0.00 4.30
2936 3266 4.022329 ACACGATTCAATTTTTCCTCCCAC 60.022 41.667 0.00 0.00 0.00 4.61
2938 3268 3.190535 CGATTCAATTTTTCCTCCCACGT 59.809 43.478 0.00 0.00 0.00 4.49
2939 3269 4.320935 CGATTCAATTTTTCCTCCCACGTT 60.321 41.667 0.00 0.00 0.00 3.99
2942 3272 5.441709 TCAATTTTTCCTCCCACGTTTAC 57.558 39.130 0.00 0.00 0.00 2.01
2943 3273 4.278919 TCAATTTTTCCTCCCACGTTTACC 59.721 41.667 0.00 0.00 0.00 2.85
2946 3276 2.259266 TTCCTCCCACGTTTACCAAC 57.741 50.000 0.00 0.00 0.00 3.77
2947 3277 0.397564 TCCTCCCACGTTTACCAACC 59.602 55.000 0.00 0.00 0.00 3.77
2960 3290 1.089123 ACCAACCCAATACCCATGGT 58.911 50.000 11.73 1.30 40.16 3.55
2970 3300 5.653769 CCCAATACCCATGGTCATTCATATC 59.346 44.000 11.73 0.00 37.09 1.63
2973 3303 7.147966 CCAATACCCATGGTCATTCATATCATG 60.148 40.741 11.73 0.00 37.09 3.07
3004 3334 7.814107 ACACAATGAATATTCAACCAACATGTC 59.186 33.333 21.50 0.00 41.13 3.06
3012 3348 6.899393 ATTCAACCAACATGTCATACTTGT 57.101 33.333 0.00 0.00 37.99 3.16
3016 3352 3.820467 ACCAACATGTCATACTTGTGTGG 59.180 43.478 0.00 1.15 36.72 4.17
3029 3365 1.524621 GTGTGGATGATGGCCTCCG 60.525 63.158 3.32 0.00 34.05 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.365370 CTCCCTGGAGCTCAGCCT 60.365 66.667 17.19 0.00 42.05 4.58
1 2 3.478274 CCTCCCTGGAGCTCAGCC 61.478 72.222 17.19 0.00 42.05 4.85
2 3 4.173924 GCCTCCCTGGAGCTCAGC 62.174 72.222 17.19 0.00 42.05 4.26
3 4 3.478274 GGCCTCCCTGGAGCTCAG 61.478 72.222 17.19 10.81 40.69 3.35
8 9 1.842381 AAAAGTCGGCCTCCCTGGAG 61.842 60.000 6.20 6.20 41.63 3.86
9 10 1.846124 AAAAGTCGGCCTCCCTGGA 60.846 57.895 0.00 0.00 38.35 3.86
10 11 1.675641 CAAAAGTCGGCCTCCCTGG 60.676 63.158 0.00 0.00 39.35 4.45
11 12 1.675641 CCAAAAGTCGGCCTCCCTG 60.676 63.158 0.00 0.00 0.00 4.45
12 13 1.423794 TTCCAAAAGTCGGCCTCCCT 61.424 55.000 0.00 0.00 0.00 4.20
13 14 0.538746 TTTCCAAAAGTCGGCCTCCC 60.539 55.000 0.00 0.00 0.00 4.30
14 15 1.324383 TTTTCCAAAAGTCGGCCTCC 58.676 50.000 0.00 0.00 0.00 4.30
15 16 3.660501 AATTTTCCAAAAGTCGGCCTC 57.339 42.857 0.00 0.00 0.00 4.70
16 17 5.538849 TTAAATTTTCCAAAAGTCGGCCT 57.461 34.783 0.00 0.00 0.00 5.19
17 18 6.606234 TTTTAAATTTTCCAAAAGTCGGCC 57.394 33.333 0.00 0.00 0.00 6.13
91 92 9.271828 CACTTGTGCATTATACCTTCATGTATA 57.728 33.333 0.00 0.00 33.58 1.47
92 93 7.775093 ACACTTGTGCATTATACCTTCATGTAT 59.225 33.333 0.10 0.00 35.64 2.29
93 94 7.065683 CACACTTGTGCATTATACCTTCATGTA 59.934 37.037 0.10 0.00 39.39 2.29
94 95 5.945784 ACACTTGTGCATTATACCTTCATGT 59.054 36.000 0.10 0.00 0.00 3.21
95 96 6.260377 CACACTTGTGCATTATACCTTCATG 58.740 40.000 0.10 0.00 39.39 3.07
96 97 6.441093 CACACTTGTGCATTATACCTTCAT 57.559 37.500 0.10 0.00 39.39 2.57
97 98 5.878332 CACACTTGTGCATTATACCTTCA 57.122 39.130 0.10 0.00 39.39 3.02
111 112 6.108015 TCGTCCTAAAAACTTACACACTTGT 58.892 36.000 0.00 0.00 40.02 3.16
112 113 6.592798 TCGTCCTAAAAACTTACACACTTG 57.407 37.500 0.00 0.00 0.00 3.16
113 114 7.614124 TTTCGTCCTAAAAACTTACACACTT 57.386 32.000 0.00 0.00 0.00 3.16
114 115 7.119553 TGTTTTCGTCCTAAAAACTTACACACT 59.880 33.333 11.42 0.00 43.65 3.55
115 116 7.242783 TGTTTTCGTCCTAAAAACTTACACAC 58.757 34.615 11.42 0.00 43.65 3.82
116 117 7.375106 TGTTTTCGTCCTAAAAACTTACACA 57.625 32.000 11.42 0.00 43.65 3.72
117 118 8.739461 CAATGTTTTCGTCCTAAAAACTTACAC 58.261 33.333 11.42 0.00 43.65 2.90
118 119 8.675504 TCAATGTTTTCGTCCTAAAAACTTACA 58.324 29.630 11.42 0.00 43.65 2.41
119 120 9.505995 TTCAATGTTTTCGTCCTAAAAACTTAC 57.494 29.630 11.42 0.00 43.65 2.34
121 122 8.989653 TTTCAATGTTTTCGTCCTAAAAACTT 57.010 26.923 11.42 4.24 43.65 2.66
122 123 9.030301 CATTTCAATGTTTTCGTCCTAAAAACT 57.970 29.630 11.42 0.00 43.65 2.66
123 124 9.026074 TCATTTCAATGTTTTCGTCCTAAAAAC 57.974 29.630 4.88 4.88 43.60 2.43
124 125 9.243637 CTCATTTCAATGTTTTCGTCCTAAAAA 57.756 29.630 0.00 0.00 37.65 1.94
125 126 8.410141 ACTCATTTCAATGTTTTCGTCCTAAAA 58.590 29.630 0.00 0.00 37.65 1.52
126 127 7.860373 CACTCATTTCAATGTTTTCGTCCTAAA 59.140 33.333 0.00 0.00 37.65 1.85
127 128 7.012894 ACACTCATTTCAATGTTTTCGTCCTAA 59.987 33.333 0.00 0.00 37.65 2.69
128 129 6.485313 ACACTCATTTCAATGTTTTCGTCCTA 59.515 34.615 0.00 0.00 37.65 2.94
129 130 5.299279 ACACTCATTTCAATGTTTTCGTCCT 59.701 36.000 0.00 0.00 37.65 3.85
130 131 5.519722 ACACTCATTTCAATGTTTTCGTCC 58.480 37.500 0.00 0.00 37.65 4.79
131 132 6.472163 ACAACACTCATTTCAATGTTTTCGTC 59.528 34.615 0.00 0.00 37.65 4.20
132 133 6.253298 CACAACACTCATTTCAATGTTTTCGT 59.747 34.615 0.00 0.00 37.65 3.85
133 134 6.630015 CACAACACTCATTTCAATGTTTTCG 58.370 36.000 0.00 0.00 37.65 3.46
134 135 6.035866 TGCACAACACTCATTTCAATGTTTTC 59.964 34.615 0.00 0.00 37.65 2.29
135 136 5.873712 TGCACAACACTCATTTCAATGTTTT 59.126 32.000 0.00 0.00 37.65 2.43
136 137 5.417811 TGCACAACACTCATTTCAATGTTT 58.582 33.333 0.00 0.00 37.65 2.83
137 138 5.008619 TGCACAACACTCATTTCAATGTT 57.991 34.783 0.00 0.00 37.65 2.71
138 139 4.652421 TGCACAACACTCATTTCAATGT 57.348 36.364 0.00 0.00 37.65 2.71
139 140 5.970140 TTTGCACAACACTCATTTCAATG 57.030 34.783 0.00 0.00 37.75 2.82
140 141 6.981762 TTTTTGCACAACACTCATTTCAAT 57.018 29.167 0.00 0.00 0.00 2.57
164 165 7.515528 GCGTTAAAAAGGCTACGATTTGTTTTT 60.516 33.333 10.70 2.48 39.10 1.94
165 166 6.074729 GCGTTAAAAAGGCTACGATTTGTTTT 60.075 34.615 10.70 3.15 39.10 2.43
166 167 5.400188 GCGTTAAAAAGGCTACGATTTGTTT 59.600 36.000 10.70 0.00 39.10 2.83
167 168 4.913345 GCGTTAAAAAGGCTACGATTTGTT 59.087 37.500 10.70 0.00 39.10 2.83
168 169 4.023878 TGCGTTAAAAAGGCTACGATTTGT 60.024 37.500 10.70 0.00 42.45 2.83
169 170 4.468643 TGCGTTAAAAAGGCTACGATTTG 58.531 39.130 10.70 0.00 42.45 2.32
170 171 4.752661 TGCGTTAAAAAGGCTACGATTT 57.247 36.364 10.70 2.49 42.45 2.17
171 172 4.379082 CCTTGCGTTAAAAAGGCTACGATT 60.379 41.667 10.70 0.00 42.45 3.34
172 173 3.126343 CCTTGCGTTAAAAAGGCTACGAT 59.874 43.478 10.70 0.00 42.45 3.73
173 174 2.481185 CCTTGCGTTAAAAAGGCTACGA 59.519 45.455 10.70 0.00 42.45 3.43
174 175 2.224784 ACCTTGCGTTAAAAAGGCTACG 59.775 45.455 11.10 2.50 45.82 3.51
175 176 3.909776 ACCTTGCGTTAAAAAGGCTAC 57.090 42.857 11.10 0.00 45.82 3.58
176 177 6.314400 CAGTATACCTTGCGTTAAAAAGGCTA 59.686 38.462 11.10 5.68 45.82 3.93
177 178 5.123344 CAGTATACCTTGCGTTAAAAAGGCT 59.877 40.000 11.10 0.00 45.82 4.58
178 179 5.106436 ACAGTATACCTTGCGTTAAAAAGGC 60.106 40.000 11.10 0.00 45.82 4.35
182 183 8.667463 GGATAAACAGTATACCTTGCGTTAAAA 58.333 33.333 0.00 0.00 0.00 1.52
183 184 8.042515 AGGATAAACAGTATACCTTGCGTTAAA 58.957 33.333 0.00 0.00 0.00 1.52
184 185 7.558604 AGGATAAACAGTATACCTTGCGTTAA 58.441 34.615 0.00 0.00 0.00 2.01
185 186 7.116075 AGGATAAACAGTATACCTTGCGTTA 57.884 36.000 0.00 0.00 0.00 3.18
186 187 5.985911 AGGATAAACAGTATACCTTGCGTT 58.014 37.500 0.00 0.00 0.00 4.84
187 188 5.609533 AGGATAAACAGTATACCTTGCGT 57.390 39.130 0.00 0.00 0.00 5.24
188 189 6.537301 TGAAAGGATAAACAGTATACCTTGCG 59.463 38.462 0.00 0.00 36.25 4.85
189 190 7.859325 TGAAAGGATAAACAGTATACCTTGC 57.141 36.000 0.00 0.00 37.71 4.01
208 209 4.796038 AGACAAATTCATGGCCTGAAAG 57.204 40.909 17.79 13.80 46.62 2.62
209 210 5.549742 AAAGACAAATTCATGGCCTGAAA 57.450 34.783 17.79 4.56 46.62 2.69
211 212 5.549742 AAAAAGACAAATTCATGGCCTGA 57.450 34.783 3.32 2.06 0.00 3.86
230 231 8.317891 TCAAAATGCTATCTGTACGAGAAAAA 57.682 30.769 0.00 0.00 33.12 1.94
231 232 7.817478 TCTCAAAATGCTATCTGTACGAGAAAA 59.183 33.333 0.00 0.00 33.12 2.29
232 233 7.320399 TCTCAAAATGCTATCTGTACGAGAAA 58.680 34.615 0.00 0.00 33.12 2.52
233 234 6.863275 TCTCAAAATGCTATCTGTACGAGAA 58.137 36.000 0.00 0.00 33.12 2.87
234 235 6.451064 TCTCAAAATGCTATCTGTACGAGA 57.549 37.500 0.00 0.00 34.25 4.04
235 236 8.978564 ATATCTCAAAATGCTATCTGTACGAG 57.021 34.615 0.00 0.00 0.00 4.18
236 237 9.764363 AAATATCTCAAAATGCTATCTGTACGA 57.236 29.630 0.00 0.00 0.00 3.43
275 276 9.814507 GAACGATGTTATGTGTTTTATGTGTAA 57.185 29.630 0.00 0.00 0.00 2.41
276 277 8.163516 CGAACGATGTTATGTGTTTTATGTGTA 58.836 33.333 0.00 0.00 0.00 2.90
277 278 7.012943 CGAACGATGTTATGTGTTTTATGTGT 58.987 34.615 0.00 0.00 0.00 3.72
278 279 7.012943 ACGAACGATGTTATGTGTTTTATGTG 58.987 34.615 0.14 0.00 0.00 3.21
279 280 7.095565 TGACGAACGATGTTATGTGTTTTATGT 60.096 33.333 0.14 0.00 0.00 2.29
280 281 7.213706 GTGACGAACGATGTTATGTGTTTTATG 59.786 37.037 0.14 0.00 0.00 1.90
281 282 7.231607 GTGACGAACGATGTTATGTGTTTTAT 58.768 34.615 0.14 0.00 0.00 1.40
282 283 6.583160 GTGACGAACGATGTTATGTGTTTTA 58.417 36.000 0.14 0.00 0.00 1.52
283 284 5.437263 GTGACGAACGATGTTATGTGTTTT 58.563 37.500 0.14 0.00 0.00 2.43
284 285 5.013861 GTGACGAACGATGTTATGTGTTT 57.986 39.130 0.14 0.00 0.00 2.83
285 286 4.640805 GTGACGAACGATGTTATGTGTT 57.359 40.909 0.14 0.00 0.00 3.32
355 356 2.158519 ACCTTCATGGAGGACGGTTTTT 60.159 45.455 27.84 0.00 36.10 1.94
356 357 1.423921 ACCTTCATGGAGGACGGTTTT 59.576 47.619 27.84 0.00 36.10 2.43
357 358 1.003233 GACCTTCATGGAGGACGGTTT 59.997 52.381 27.84 2.09 39.31 3.27
358 359 0.613777 GACCTTCATGGAGGACGGTT 59.386 55.000 27.84 2.95 39.31 4.44
359 360 1.605058 CGACCTTCATGGAGGACGGT 61.605 60.000 30.22 9.58 46.36 4.83
360 361 1.141881 CGACCTTCATGGAGGACGG 59.858 63.158 30.22 15.78 46.36 4.79
361 362 4.814900 CGACCTTCATGGAGGACG 57.185 61.111 27.84 27.18 45.39 4.79
362 363 1.407258 CTCTCGACCTTCATGGAGGAC 59.593 57.143 27.84 19.61 39.25 3.85
363 364 1.769026 CTCTCGACCTTCATGGAGGA 58.231 55.000 27.84 3.10 39.25 3.71
364 365 0.103937 GCTCTCGACCTTCATGGAGG 59.896 60.000 19.40 19.40 42.75 4.30
365 366 0.103937 GGCTCTCGACCTTCATGGAG 59.896 60.000 0.00 0.00 39.71 3.86
366 367 0.614697 TGGCTCTCGACCTTCATGGA 60.615 55.000 0.00 0.00 39.71 3.41
367 368 0.250234 TTGGCTCTCGACCTTCATGG 59.750 55.000 0.00 0.00 42.93 3.66
368 369 2.099141 TTTGGCTCTCGACCTTCATG 57.901 50.000 0.00 0.00 0.00 3.07
369 370 2.616510 CCTTTTGGCTCTCGACCTTCAT 60.617 50.000 0.00 0.00 0.00 2.57
370 371 1.270839 CCTTTTGGCTCTCGACCTTCA 60.271 52.381 0.00 0.00 0.00 3.02
371 372 1.443802 CCTTTTGGCTCTCGACCTTC 58.556 55.000 0.00 0.00 0.00 3.46
372 373 3.633361 CCTTTTGGCTCTCGACCTT 57.367 52.632 0.00 0.00 0.00 3.50
383 384 0.695347 AGAGGAGTGAGGCCTTTTGG 59.305 55.000 6.77 0.00 44.18 3.28
384 385 2.157738 CAAGAGGAGTGAGGCCTTTTG 58.842 52.381 6.77 0.00 40.03 2.44
385 386 1.777272 ACAAGAGGAGTGAGGCCTTTT 59.223 47.619 6.77 0.00 35.44 2.27
386 387 1.439543 ACAAGAGGAGTGAGGCCTTT 58.560 50.000 6.77 0.00 35.44 3.11
387 388 1.349357 GAACAAGAGGAGTGAGGCCTT 59.651 52.381 6.77 0.00 35.44 4.35
388 389 0.980423 GAACAAGAGGAGTGAGGCCT 59.020 55.000 3.86 3.86 38.81 5.19
389 390 0.035915 GGAACAAGAGGAGTGAGGCC 60.036 60.000 0.00 0.00 0.00 5.19
390 391 0.035915 GGGAACAAGAGGAGTGAGGC 60.036 60.000 0.00 0.00 0.00 4.70
391 392 0.615850 GGGGAACAAGAGGAGTGAGG 59.384 60.000 0.00 0.00 0.00 3.86
392 393 0.615850 GGGGGAACAAGAGGAGTGAG 59.384 60.000 0.00 0.00 0.00 3.51
393 394 0.193574 AGGGGGAACAAGAGGAGTGA 59.806 55.000 0.00 0.00 0.00 3.41
394 395 1.068121 AAGGGGGAACAAGAGGAGTG 58.932 55.000 0.00 0.00 0.00 3.51
395 396 1.834540 AAAGGGGGAACAAGAGGAGT 58.165 50.000 0.00 0.00 0.00 3.85
396 397 2.980246 AAAAGGGGGAACAAGAGGAG 57.020 50.000 0.00 0.00 0.00 3.69
397 398 2.789399 AGAAAAAGGGGGAACAAGAGGA 59.211 45.455 0.00 0.00 0.00 3.71
398 399 3.157881 GAGAAAAAGGGGGAACAAGAGG 58.842 50.000 0.00 0.00 0.00 3.69
399 400 2.814336 CGAGAAAAAGGGGGAACAAGAG 59.186 50.000 0.00 0.00 0.00 2.85
400 401 2.440253 TCGAGAAAAAGGGGGAACAAGA 59.560 45.455 0.00 0.00 0.00 3.02
401 402 2.814336 CTCGAGAAAAAGGGGGAACAAG 59.186 50.000 6.58 0.00 0.00 3.16
402 403 2.488347 CCTCGAGAAAAAGGGGGAACAA 60.488 50.000 15.71 0.00 0.00 2.83
403 404 1.073284 CCTCGAGAAAAAGGGGGAACA 59.927 52.381 15.71 0.00 0.00 3.18
404 405 1.822506 CCTCGAGAAAAAGGGGGAAC 58.177 55.000 15.71 0.00 0.00 3.62
405 406 0.037734 GCCTCGAGAAAAAGGGGGAA 59.962 55.000 15.71 0.00 32.98 3.97
406 407 1.131303 TGCCTCGAGAAAAAGGGGGA 61.131 55.000 15.71 0.00 32.98 4.81
407 408 0.251165 TTGCCTCGAGAAAAAGGGGG 60.251 55.000 15.71 0.00 32.98 5.40
408 409 0.881796 GTTGCCTCGAGAAAAAGGGG 59.118 55.000 15.71 0.00 32.98 4.79
409 410 1.266989 GTGTTGCCTCGAGAAAAAGGG 59.733 52.381 15.71 0.00 32.98 3.95
410 411 1.069906 CGTGTTGCCTCGAGAAAAAGG 60.070 52.381 15.71 5.24 35.65 3.11
411 412 1.660333 GCGTGTTGCCTCGAGAAAAAG 60.660 52.381 15.71 0.00 37.76 2.27
412 413 0.306533 GCGTGTTGCCTCGAGAAAAA 59.693 50.000 15.71 1.94 37.76 1.94
413 414 1.827315 CGCGTGTTGCCTCGAGAAAA 61.827 55.000 15.71 4.73 42.08 2.29
414 415 2.307309 CGCGTGTTGCCTCGAGAAA 61.307 57.895 15.71 5.13 42.08 2.52
415 416 2.733218 CGCGTGTTGCCTCGAGAA 60.733 61.111 15.71 0.00 42.08 2.87
416 417 4.717629 CCGCGTGTTGCCTCGAGA 62.718 66.667 15.71 0.00 42.08 4.04
431 432 2.735478 TGCTTTACGACCGCACCG 60.735 61.111 0.00 0.00 0.00 4.94
439 440 3.410631 TGAATCCCTTGTGCTTTACGA 57.589 42.857 0.00 0.00 0.00 3.43
454 455 2.052766 CGGAAGCGCGCATGAATC 60.053 61.111 35.10 21.00 0.00 2.52
475 476 1.205893 GGACTGCTAGTCAAGTGGGAG 59.794 57.143 15.22 0.00 46.79 4.30
487 488 4.528987 TGTACCACTACATTTGGACTGCTA 59.471 41.667 0.00 0.00 37.58 3.49
494 495 7.389803 TGAATGATTGTACCACTACATTTGG 57.610 36.000 0.00 0.00 40.32 3.28
527 528 4.625028 AGTGAAAGCATTTGCCTCTTTTC 58.375 39.130 0.00 3.86 39.27 2.29
529 530 3.893813 AGAGTGAAAGCATTTGCCTCTTT 59.106 39.130 0.00 0.00 39.27 2.52
530 531 3.494332 AGAGTGAAAGCATTTGCCTCTT 58.506 40.909 0.00 0.00 39.27 2.85
553 554 4.051922 AGTTTCGCAGTAAAGTCAGTGAG 58.948 43.478 0.00 0.00 0.00 3.51
564 565 2.423892 CTCTGAGGCTAGTTTCGCAGTA 59.576 50.000 0.00 2.28 33.55 2.74
578 579 2.820787 ACTGTTACGGTCTTCTCTGAGG 59.179 50.000 4.59 0.00 0.00 3.86
582 583 1.961394 TGCACTGTTACGGTCTTCTCT 59.039 47.619 0.00 0.00 0.00 3.10
608 609 2.480073 CGCATGGGCTAGTGGAAAAATG 60.480 50.000 0.00 0.00 38.10 2.32
619 620 1.988982 TACAATGGGCGCATGGGCTA 61.989 55.000 30.72 21.29 41.87 3.93
632 633 8.292448 AGTAAAGAAAGATTGCAGTGTACAATG 58.708 33.333 18.64 18.64 37.85 2.82
636 637 7.421530 TGAGTAAAGAAAGATTGCAGTGTAC 57.578 36.000 0.00 0.00 0.00 2.90
637 638 7.307989 GCTTGAGTAAAGAAAGATTGCAGTGTA 60.308 37.037 0.00 0.00 38.24 2.90
663 666 6.509837 CGTCCGAATCTACTACTACTTGACAG 60.510 46.154 0.00 0.00 0.00 3.51
700 703 3.374764 TCTATCTGCTGCTCCCTAACAA 58.625 45.455 0.00 0.00 0.00 2.83
707 710 6.406849 CCTCCTAATAATCTATCTGCTGCTCC 60.407 46.154 0.00 0.00 0.00 4.70
714 717 7.310734 GGGGTGTTCCTCCTAATAATCTATCTG 60.311 44.444 0.00 0.00 35.33 2.90
715 718 6.731448 GGGGTGTTCCTCCTAATAATCTATCT 59.269 42.308 0.00 0.00 35.33 1.98
716 719 6.500751 TGGGGTGTTCCTCCTAATAATCTATC 59.499 42.308 0.00 0.00 32.02 2.08
729 739 1.666872 CGAACGTGGGGTGTTCCTC 60.667 63.158 0.00 0.00 42.08 3.71
747 757 3.350219 TTGTCTGTGGATTAAGGAGCC 57.650 47.619 0.00 0.00 0.00 4.70
748 758 4.082733 GGTTTTGTCTGTGGATTAAGGAGC 60.083 45.833 0.00 0.00 0.00 4.70
751 761 5.070001 TCTGGTTTTGTCTGTGGATTAAGG 58.930 41.667 0.00 0.00 0.00 2.69
780 986 1.228154 GAACAGTTTGGCCCTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
799 1005 2.200899 CGCTTTTGGGGTTTCAAGTTG 58.799 47.619 0.00 0.00 0.00 3.16
831 1041 1.004918 GGAAGACACGGGACAGTGG 60.005 63.158 7.46 0.00 45.80 4.00
873 1083 1.905215 CCATGGGAGTGAGAGTGAAGT 59.095 52.381 2.85 0.00 0.00 3.01
874 1084 2.182827 TCCATGGGAGTGAGAGTGAAG 58.817 52.381 13.02 0.00 0.00 3.02
910 1125 4.097361 GAGTGGGGGAACGGAGGC 62.097 72.222 0.00 0.00 0.00 4.70
922 1137 3.306364 CCGGGATGCTTTATAGAGAGTGG 60.306 52.174 0.00 0.00 0.00 4.00
943 1158 0.696501 TTACTGGAGGTTCTTGGCCC 59.303 55.000 0.00 0.00 0.00 5.80
1236 1454 3.197790 CGGATGGTGCGCTTCTGG 61.198 66.667 9.73 0.00 0.00 3.86
1779 1997 3.390521 TTGGACGCCATCTCCGCT 61.391 61.111 0.00 0.00 31.53 5.52
1986 2205 3.782443 CTGCGGTAGGGGTCCCAC 61.782 72.222 10.98 0.00 38.92 4.61
2037 2256 2.733026 GACGAAACGCAAAGGCTACTAA 59.267 45.455 0.00 0.00 38.10 2.24
2041 2260 1.425412 GAGACGAAACGCAAAGGCTA 58.575 50.000 0.00 0.00 38.10 3.93
2043 2262 1.154654 CGAGACGAAACGCAAAGGC 60.155 57.895 0.00 0.00 0.00 4.35
2117 2348 2.359900 GAGCAAGGAATCCAATGTCGT 58.640 47.619 0.61 0.00 0.00 4.34
2120 2351 1.683011 CCCGAGCAAGGAATCCAATGT 60.683 52.381 0.61 0.00 0.00 2.71
2154 2389 1.601419 TACAGGAGGAAACGCTCCCG 61.601 60.000 0.00 0.00 46.81 5.14
2185 2424 1.745489 GGACCACCATGCTTCGTCC 60.745 63.158 4.39 4.39 36.52 4.79
2187 2426 2.047274 CGGACCACCATGCTTCGT 60.047 61.111 0.00 0.00 35.59 3.85
2227 2469 3.086600 GTCCCCAGCCCAGAGGAG 61.087 72.222 0.00 0.00 33.47 3.69
2228 2470 1.897037 TATGTCCCCAGCCCAGAGGA 61.897 60.000 0.00 0.00 33.47 3.71
2229 2471 1.384502 TATGTCCCCAGCCCAGAGG 60.385 63.158 0.00 0.00 0.00 3.69
2230 2472 1.832912 GTATGTCCCCAGCCCAGAG 59.167 63.158 0.00 0.00 0.00 3.35
2231 2473 2.063979 CGTATGTCCCCAGCCCAGA 61.064 63.158 0.00 0.00 0.00 3.86
2232 2474 2.505982 CGTATGTCCCCAGCCCAG 59.494 66.667 0.00 0.00 0.00 4.45
2233 2475 3.087253 CCGTATGTCCCCAGCCCA 61.087 66.667 0.00 0.00 0.00 5.36
2234 2476 4.564110 GCCGTATGTCCCCAGCCC 62.564 72.222 0.00 0.00 0.00 5.19
2235 2477 3.480133 AGCCGTATGTCCCCAGCC 61.480 66.667 0.00 0.00 0.00 4.85
2236 2478 2.203070 CAGCCGTATGTCCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
2239 2481 1.153229 GAACCAGCCGTATGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
2341 2594 9.197694 AGTATCGTAGTAATGCTGATCAAATTC 57.802 33.333 6.57 1.42 0.00 2.17
2350 2603 6.439599 ACAAGCTAGTATCGTAGTAATGCTG 58.560 40.000 0.00 0.00 0.00 4.41
2366 2621 4.023707 CCCTCAGTGTTTCAAACAAGCTAG 60.024 45.833 4.02 0.78 44.16 3.42
2371 2626 4.590918 TGTACCCTCAGTGTTTCAAACAA 58.409 39.130 4.02 0.00 44.16 2.83
2383 2647 3.981071 TTCCAGTGATTGTACCCTCAG 57.019 47.619 0.00 0.00 0.00 3.35
2388 2658 4.843728 TCCAGATTTCCAGTGATTGTACC 58.156 43.478 0.00 0.00 0.00 3.34
2396 2666 4.082571 GGTTGTTCATCCAGATTTCCAGTG 60.083 45.833 0.00 0.00 0.00 3.66
2398 2668 4.081406 TGGTTGTTCATCCAGATTTCCAG 58.919 43.478 0.00 0.00 0.00 3.86
2410 2680 7.153985 CCTACATTTGTTCAATGGTTGTTCAT 58.846 34.615 0.00 0.00 46.06 2.57
2471 2756 1.372004 CATTGTGCAACGCCCACAG 60.372 57.895 0.00 0.00 43.34 3.66
2472 2757 1.825622 TCATTGTGCAACGCCCACA 60.826 52.632 0.00 0.00 42.39 4.17
2473 2758 1.371635 GTCATTGTGCAACGCCCAC 60.372 57.895 0.00 0.00 42.39 4.61
2474 2759 1.387295 TTGTCATTGTGCAACGCCCA 61.387 50.000 0.00 0.00 42.39 5.36
2533 2818 0.804989 CGGTCCATGACAAAAGCTCC 59.195 55.000 0.00 0.00 33.68 4.70
2539 2824 2.839836 TGGCCGGTCCATGACAAA 59.160 55.556 12.86 0.00 40.72 2.83
2663 2965 0.108615 CAAGGACGGACACCTAGCTG 60.109 60.000 0.00 0.00 36.67 4.24
2676 2978 0.820871 ACTCTGCTCGATCCAAGGAC 59.179 55.000 0.00 0.00 0.00 3.85
2695 2998 4.687215 GTCCACGGAGCAGCAGCA 62.687 66.667 3.17 0.00 45.49 4.41
2697 3000 4.363990 ACGTCCACGGAGCAGCAG 62.364 66.667 3.81 0.00 44.95 4.24
2698 3001 4.662961 CACGTCCACGGAGCAGCA 62.663 66.667 3.81 0.00 44.95 4.41
2701 3004 3.986006 GACCACGTCCACGGAGCA 61.986 66.667 3.81 0.00 44.95 4.26
2702 3005 3.986006 TGACCACGTCCACGGAGC 61.986 66.667 3.81 0.00 44.95 4.70
2703 3006 2.049433 GTGACCACGTCCACGGAG 60.049 66.667 3.81 0.00 44.95 4.63
2721 3032 2.109425 AATTCGTTGGGTGCCTACTC 57.891 50.000 0.00 0.00 0.00 2.59
2726 3037 2.479560 GCTCAATAATTCGTTGGGTGCC 60.480 50.000 5.55 0.00 29.71 5.01
2796 3118 1.152247 AGCTATGATGGCGGGGAGA 60.152 57.895 0.00 0.00 34.52 3.71
2808 3130 1.003355 CCCATACGGCCCAGCTATG 60.003 63.158 0.00 0.00 0.00 2.23
2826 3155 1.641577 AACGATACGGAGAAAGCAGC 58.358 50.000 0.00 0.00 0.00 5.25
2852 3182 6.259387 GTGTTAGTAGGTGCAGTAAACAAAGT 59.741 38.462 0.00 0.00 0.00 2.66
2854 3184 5.528320 GGTGTTAGTAGGTGCAGTAAACAAA 59.472 40.000 0.00 0.00 0.00 2.83
2855 3185 5.058490 GGTGTTAGTAGGTGCAGTAAACAA 58.942 41.667 0.00 0.00 0.00 2.83
2858 3188 4.959560 TGGTGTTAGTAGGTGCAGTAAA 57.040 40.909 0.00 0.00 0.00 2.01
2863 3193 4.081309 GGATACTTGGTGTTAGTAGGTGCA 60.081 45.833 0.00 0.00 32.06 4.57
2864 3194 4.439968 GGATACTTGGTGTTAGTAGGTGC 58.560 47.826 0.00 0.00 32.06 5.01
2898 3228 1.747745 GTGTACGCCCCCAATGACC 60.748 63.158 0.00 0.00 0.00 4.02
2899 3229 2.104253 CGTGTACGCCCCCAATGAC 61.104 63.158 0.00 0.00 0.00 3.06
2900 3230 1.618876 ATCGTGTACGCCCCCAATGA 61.619 55.000 0.00 0.00 39.60 2.57
2901 3231 0.746563 AATCGTGTACGCCCCCAATG 60.747 55.000 0.00 0.00 39.60 2.82
2902 3232 0.463116 GAATCGTGTACGCCCCCAAT 60.463 55.000 0.00 0.00 39.60 3.16
2903 3233 1.078988 GAATCGTGTACGCCCCCAA 60.079 57.895 0.00 0.00 39.60 4.12
2904 3234 1.828461 TTGAATCGTGTACGCCCCCA 61.828 55.000 0.00 0.00 39.60 4.96
2905 3235 0.463116 ATTGAATCGTGTACGCCCCC 60.463 55.000 0.00 0.00 39.60 5.40
2906 3236 1.375551 AATTGAATCGTGTACGCCCC 58.624 50.000 0.00 0.00 39.60 5.80
2907 3237 3.481112 AAAATTGAATCGTGTACGCCC 57.519 42.857 0.00 0.00 39.60 6.13
2914 3244 4.485163 GTGGGAGGAAAAATTGAATCGTG 58.515 43.478 0.00 0.00 0.00 4.35
2915 3245 3.190535 CGTGGGAGGAAAAATTGAATCGT 59.809 43.478 0.00 0.00 0.00 3.73
2920 3250 4.278919 GGTAAACGTGGGAGGAAAAATTGA 59.721 41.667 0.00 0.00 0.00 2.57
2932 3262 1.623163 ATTGGGTTGGTAAACGTGGG 58.377 50.000 0.00 0.00 37.15 4.61
2934 3264 2.488937 GGGTATTGGGTTGGTAAACGTG 59.511 50.000 0.00 0.00 37.15 4.49
2936 3266 2.792878 TGGGTATTGGGTTGGTAAACG 58.207 47.619 0.00 0.00 37.15 3.60
2938 3268 3.077695 ACCATGGGTATTGGGTTGGTAAA 59.922 43.478 18.09 0.00 38.64 2.01
2939 3269 2.655407 ACCATGGGTATTGGGTTGGTAA 59.345 45.455 18.09 0.00 38.64 2.85
2942 3272 1.006519 TGACCATGGGTATTGGGTTGG 59.993 52.381 18.09 0.00 38.64 3.77
2943 3273 2.523325 TGACCATGGGTATTGGGTTG 57.477 50.000 18.09 0.00 38.64 3.77
2946 3276 3.311167 TGAATGACCATGGGTATTGGG 57.689 47.619 18.09 0.00 38.64 4.12
2947 3277 6.247676 TGATATGAATGACCATGGGTATTGG 58.752 40.000 18.09 0.00 35.25 3.16
2960 3290 8.384718 TCATTGTGTATCCCATGATATGAATGA 58.615 33.333 0.00 0.00 35.94 2.57
2970 3300 8.084073 GGTTGAATATTCATTGTGTATCCCATG 58.916 37.037 18.61 0.00 37.00 3.66
2973 3303 7.581213 TGGTTGAATATTCATTGTGTATCCC 57.419 36.000 18.61 8.27 37.00 3.85
3001 3331 4.516323 CCATCATCCACACAAGTATGACA 58.484 43.478 0.00 0.00 31.56 3.58
3004 3334 2.620115 GGCCATCATCCACACAAGTATG 59.380 50.000 0.00 0.00 0.00 2.39
3012 3348 1.688884 TCGGAGGCCATCATCCACA 60.689 57.895 5.01 0.00 35.14 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.