Multiple sequence alignment - TraesCS4A01G415100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G415100 chr4A 100.000 2868 0 0 1 2868 685310385 685307518 0.000000e+00 5297
1 TraesCS4A01G415100 chr4A 78.274 672 70 37 1159 1803 685302024 685301402 2.100000e-96 363
2 TraesCS4A01G415100 chr4D 91.636 1901 81 30 669 2539 478674520 478672668 0.000000e+00 2558
3 TraesCS4A01G415100 chr4D 91.107 596 40 8 76 668 478675331 478674746 0.000000e+00 795
4 TraesCS4A01G415100 chr4D 75.084 891 118 47 1159 2001 478668289 478667455 1.280000e-83 320
5 TraesCS4A01G415100 chr4B 90.854 1826 94 31 736 2539 605279888 605278114 0.000000e+00 2379
6 TraesCS4A01G415100 chr4B 89.632 598 47 9 76 668 605280789 605280202 0.000000e+00 747
7 TraesCS4A01G415100 chr5D 96.687 332 8 2 2540 2868 393901557 393901888 1.500000e-152 549
8 TraesCS4A01G415100 chr5D 96.073 331 10 2 2541 2868 432456619 432456949 1.170000e-148 536
9 TraesCS4A01G415100 chr3D 96.084 332 10 1 2540 2868 570045631 570045962 3.250000e-149 538
10 TraesCS4A01G415100 chr3D 95.482 332 12 2 2540 2868 610135649 610135980 7.040000e-146 527
11 TraesCS4A01G415100 chr7A 95.783 332 11 2 2540 2868 470793560 470793229 1.510000e-147 532
12 TraesCS4A01G415100 chr1D 95.783 332 10 2 2540 2868 17122075 17122405 1.510000e-147 532
13 TraesCS4A01G415100 chr1D 95.482 332 12 1 2540 2868 99684897 99685228 7.040000e-146 527
14 TraesCS4A01G415100 chr1D 91.837 98 8 0 1164 1261 131412501 131412404 1.390000e-28 137
15 TraesCS4A01G415100 chr2D 95.482 332 12 2 2540 2868 647737283 647736952 7.040000e-146 527
16 TraesCS4A01G415100 chr1B 95.482 332 12 1 2540 2868 59492959 59493290 7.040000e-146 527
17 TraesCS4A01G415100 chr1A 92.857 98 7 0 1164 1261 158493627 158493530 2.980000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G415100 chr4A 685307518 685310385 2867 True 5297.0 5297 100.0000 1 2868 1 chr4A.!!$R2 2867
1 TraesCS4A01G415100 chr4A 685301402 685302024 622 True 363.0 363 78.2740 1159 1803 1 chr4A.!!$R1 644
2 TraesCS4A01G415100 chr4D 478672668 478675331 2663 True 1676.5 2558 91.3715 76 2539 2 chr4D.!!$R2 2463
3 TraesCS4A01G415100 chr4D 478667455 478668289 834 True 320.0 320 75.0840 1159 2001 1 chr4D.!!$R1 842
4 TraesCS4A01G415100 chr4B 605278114 605280789 2675 True 1563.0 2379 90.2430 76 2539 2 chr4B.!!$R1 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.108662 TACTGATGCACCGAGCTGTG 60.109 55.0 0.0 0.0 45.94 3.66 F
71 72 0.173708 CTGGAGCACGGACCTAGAAC 59.826 60.0 0.0 0.0 0.00 3.01 F
1038 1423 0.178767 CGCTCAATCCCCACAGATCA 59.821 55.0 0.0 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2127 0.622665 AGGAGTTCAGGAAGCCCATG 59.377 55.000 0.0 0.0 33.88 3.66 R
1690 2128 2.122768 CTAGGAGTTCAGGAAGCCCAT 58.877 52.381 0.0 0.0 33.88 4.00 R
2833 3307 0.039074 AGAGAGAAACGACACCGCAG 60.039 55.000 0.0 0.0 39.95 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.969157 CTACTGATGCACCGAGCTG 58.031 57.895 0.00 0.00 45.94 4.24
19 20 0.174389 CTACTGATGCACCGAGCTGT 59.826 55.000 0.00 0.00 45.94 4.40
20 21 0.108662 TACTGATGCACCGAGCTGTG 60.109 55.000 0.00 0.00 45.94 3.66
21 22 1.079612 CTGATGCACCGAGCTGTGA 60.080 57.895 8.31 0.00 45.94 3.58
22 23 1.079612 TGATGCACCGAGCTGTGAG 60.080 57.895 8.31 0.00 45.94 3.51
23 24 2.435586 ATGCACCGAGCTGTGAGC 60.436 61.111 8.31 1.83 45.94 4.26
24 25 3.244281 ATGCACCGAGCTGTGAGCA 62.244 57.895 8.31 7.41 45.56 4.26
25 26 3.117171 GCACCGAGCTGTGAGCAG 61.117 66.667 8.31 0.00 45.56 4.24
33 34 2.510238 CTGTGAGCAGCTACGCCC 60.510 66.667 0.00 0.00 35.77 6.13
34 35 4.082523 TGTGAGCAGCTACGCCCC 62.083 66.667 0.00 0.00 0.00 5.80
35 36 3.775654 GTGAGCAGCTACGCCCCT 61.776 66.667 0.00 0.00 0.00 4.79
36 37 3.003173 TGAGCAGCTACGCCCCTT 61.003 61.111 0.00 0.00 0.00 3.95
37 38 2.269241 GAGCAGCTACGCCCCTTT 59.731 61.111 0.00 0.00 0.00 3.11
38 39 1.377333 GAGCAGCTACGCCCCTTTT 60.377 57.895 0.00 0.00 0.00 2.27
39 40 1.369839 GAGCAGCTACGCCCCTTTTC 61.370 60.000 0.00 0.00 0.00 2.29
40 41 2.750888 GCAGCTACGCCCCTTTTCG 61.751 63.158 0.00 0.00 0.00 3.46
41 42 2.106683 CAGCTACGCCCCTTTTCGG 61.107 63.158 0.00 0.00 0.00 4.30
42 43 3.506096 GCTACGCCCCTTTTCGGC 61.506 66.667 0.00 0.00 43.38 5.54
43 44 2.267961 CTACGCCCCTTTTCGGCT 59.732 61.111 0.00 0.00 44.73 5.52
44 45 1.814169 CTACGCCCCTTTTCGGCTC 60.814 63.158 0.00 0.00 44.73 4.70
45 46 2.515996 CTACGCCCCTTTTCGGCTCA 62.516 60.000 0.00 0.00 44.73 4.26
46 47 1.906105 TACGCCCCTTTTCGGCTCAT 61.906 55.000 0.00 0.00 44.73 2.90
47 48 2.472909 CGCCCCTTTTCGGCTCATC 61.473 63.158 0.00 0.00 44.73 2.92
48 49 1.077429 GCCCCTTTTCGGCTCATCT 60.077 57.895 0.00 0.00 43.48 2.90
49 50 1.379642 GCCCCTTTTCGGCTCATCTG 61.380 60.000 0.00 0.00 43.48 2.90
50 51 0.749454 CCCCTTTTCGGCTCATCTGG 60.749 60.000 0.00 0.00 0.00 3.86
51 52 0.253044 CCCTTTTCGGCTCATCTGGA 59.747 55.000 0.00 0.00 0.00 3.86
52 53 1.373570 CCTTTTCGGCTCATCTGGAC 58.626 55.000 0.00 0.00 0.00 4.02
53 54 1.065854 CCTTTTCGGCTCATCTGGACT 60.066 52.381 0.00 0.00 0.00 3.85
54 55 2.005451 CTTTTCGGCTCATCTGGACTG 58.995 52.381 0.00 0.00 0.00 3.51
55 56 0.250234 TTTCGGCTCATCTGGACTGG 59.750 55.000 0.00 0.00 0.00 4.00
56 57 0.614697 TTCGGCTCATCTGGACTGGA 60.615 55.000 0.00 0.00 0.00 3.86
57 58 1.039785 TCGGCTCATCTGGACTGGAG 61.040 60.000 0.00 0.00 0.00 3.86
58 59 4.852962 GCTCATCTGGACTGGAGC 57.147 61.111 0.00 0.00 44.97 4.70
60 61 3.756739 CTCATCTGGACTGGAGCAC 57.243 57.895 0.00 0.00 0.00 4.40
61 62 0.179116 CTCATCTGGACTGGAGCACG 60.179 60.000 0.00 0.00 0.00 5.34
62 63 1.153489 CATCTGGACTGGAGCACGG 60.153 63.158 0.00 0.00 0.00 4.94
63 64 1.305297 ATCTGGACTGGAGCACGGA 60.305 57.895 0.00 0.00 0.00 4.69
64 65 1.608717 ATCTGGACTGGAGCACGGAC 61.609 60.000 0.00 0.00 0.00 4.79
65 66 3.302347 CTGGACTGGAGCACGGACC 62.302 68.421 2.63 2.63 40.22 4.46
66 67 2.997897 GGACTGGAGCACGGACCT 60.998 66.667 2.42 0.00 37.32 3.85
67 68 1.681327 GGACTGGAGCACGGACCTA 60.681 63.158 2.42 0.00 37.32 3.08
68 69 1.668101 GGACTGGAGCACGGACCTAG 61.668 65.000 2.42 0.00 37.32 3.02
69 70 0.680280 GACTGGAGCACGGACCTAGA 60.680 60.000 0.00 0.00 0.00 2.43
70 71 0.251653 ACTGGAGCACGGACCTAGAA 60.252 55.000 0.00 0.00 0.00 2.10
71 72 0.173708 CTGGAGCACGGACCTAGAAC 59.826 60.000 0.00 0.00 0.00 3.01
72 73 0.541063 TGGAGCACGGACCTAGAACA 60.541 55.000 0.00 0.00 0.00 3.18
73 74 0.173708 GGAGCACGGACCTAGAACAG 59.826 60.000 0.00 0.00 0.00 3.16
125 126 6.695278 GCTGACAGTGACAGAGTATATTCTTC 59.305 42.308 23.95 0.64 37.54 2.87
132 133 7.397476 AGTGACAGAGTATATTCTTCTCCACAA 59.603 37.037 13.46 0.00 0.00 3.33
135 136 7.777095 ACAGAGTATATTCTTCTCCACAACTC 58.223 38.462 0.00 0.00 0.00 3.01
138 139 9.127277 AGAGTATATTCTTCTCCACAACTCTAC 57.873 37.037 0.00 0.00 39.37 2.59
146 147 7.631007 TCTTCTCCACAACTCTACTAGTATCA 58.369 38.462 2.33 0.00 37.50 2.15
148 149 8.453238 TTCTCCACAACTCTACTAGTATCATC 57.547 38.462 2.33 0.00 37.50 2.92
150 151 8.221251 TCTCCACAACTCTACTAGTATCATCAT 58.779 37.037 2.33 0.00 37.50 2.45
151 152 8.397575 TCCACAACTCTACTAGTATCATCATC 57.602 38.462 2.33 0.00 37.50 2.92
152 153 7.448777 TCCACAACTCTACTAGTATCATCATCC 59.551 40.741 2.33 0.00 37.50 3.51
158 159 8.221251 ACTCTACTAGTATCATCATCCTTCACA 58.779 37.037 2.33 0.00 36.36 3.58
163 164 7.984050 ACTAGTATCATCATCCTTCACAAGTTG 59.016 37.037 0.00 0.00 0.00 3.16
169 170 2.550830 TCCTTCACAAGTTGAGGAGC 57.449 50.000 10.54 0.00 32.96 4.70
186 187 1.735920 GCGAGTGAGTGAGTGGCTG 60.736 63.158 0.00 0.00 0.00 4.85
192 193 1.079266 GAGTGAGTGGCTGGCTGAG 60.079 63.158 2.00 0.00 0.00 3.35
193 194 2.046507 GTGAGTGGCTGGCTGAGG 60.047 66.667 2.00 0.00 0.00 3.86
275 281 3.300009 GCATCGTGCAAATTACCTATGC 58.700 45.455 0.00 0.00 44.26 3.14
313 320 2.088423 AGAGCTCAGTCTACAAGGACG 58.912 52.381 17.77 0.00 40.76 4.79
327 334 2.260743 GACGGGGACAAGGACGTC 59.739 66.667 7.13 7.13 46.89 4.34
396 403 2.430367 ACTTTCCAGTCACCCCGC 59.570 61.111 0.00 0.00 0.00 6.13
428 435 0.179094 TACCACTTGCGGGCGATTAG 60.179 55.000 0.00 0.00 0.00 1.73
465 472 1.064685 AGGGAGACAAAATAAGGCGGG 60.065 52.381 0.00 0.00 0.00 6.13
499 506 4.386652 TCAAATAAGAAACGTCGCAGGTAC 59.613 41.667 0.00 0.00 0.00 3.34
503 510 3.581024 AGAAACGTCGCAGGTACATTA 57.419 42.857 0.00 0.00 0.00 1.90
515 522 3.128589 CAGGTACATTAATTGGCACGCTT 59.871 43.478 0.00 0.00 0.00 4.68
517 524 2.652941 ACATTAATTGGCACGCTTGG 57.347 45.000 0.00 0.00 0.00 3.61
525 532 2.684843 GGCACGCTTGGCTTGAGAG 61.685 63.158 9.70 0.00 44.99 3.20
542 549 3.695606 GGCGACCTGTCTCAGCCA 61.696 66.667 9.07 0.00 46.48 4.75
607 614 8.900983 ATTTTACTTTGGAAATTAAGCAAGCA 57.099 26.923 0.00 0.00 0.00 3.91
608 615 8.723942 TTTTACTTTGGAAATTAAGCAAGCAA 57.276 26.923 0.00 0.00 0.00 3.91
609 616 7.945033 TTACTTTGGAAATTAAGCAAGCAAG 57.055 32.000 0.00 0.00 0.00 4.01
624 631 4.487948 CAAGCAAGGGTTTATGTGTGATG 58.512 43.478 0.00 0.00 0.00 3.07
649 656 7.448161 TGGTGCAATTAATTTCATCGATCCTAT 59.552 33.333 3.83 0.00 0.00 2.57
650 657 8.946085 GGTGCAATTAATTTCATCGATCCTATA 58.054 33.333 3.83 0.00 0.00 1.31
660 667 2.159382 TCGATCCTATACGCATGCAGA 58.841 47.619 19.57 4.53 0.00 4.26
671 903 1.742146 CATGCAGAGCCGGCTAGTA 59.258 57.895 32.97 24.61 0.00 1.82
688 920 5.167121 GCTAGTATAGTGATGATGCCTGTG 58.833 45.833 0.00 0.00 41.93 3.66
701 938 7.983484 TGATGATGCCTGTGCTAGTATTATATG 59.017 37.037 0.00 0.00 38.71 1.78
734 971 7.507829 AGAGGATATTTCAGATTTCAGAGTGG 58.492 38.462 0.00 0.00 0.00 4.00
790 1172 4.989168 GCTTTTCTACATACCCATCCGTAG 59.011 45.833 0.00 0.00 34.03 3.51
847 1231 3.457625 ATAGCGAGGGCAGCTGCTG 62.458 63.158 35.82 24.80 45.60 4.41
888 1272 3.469629 CGTGCACAGTCTTTTATTCACG 58.530 45.455 18.64 0.00 39.68 4.35
889 1273 3.664276 CGTGCACAGTCTTTTATTCACGG 60.664 47.826 18.64 0.00 41.31 4.94
930 1314 1.206371 GCAATTCTGCCTGCCAATCTT 59.794 47.619 0.00 0.00 43.26 2.40
931 1315 2.428171 GCAATTCTGCCTGCCAATCTTA 59.572 45.455 0.00 0.00 43.26 2.10
932 1316 3.490419 GCAATTCTGCCTGCCAATCTTAG 60.490 47.826 0.00 0.00 43.26 2.18
933 1317 3.659183 ATTCTGCCTGCCAATCTTAGT 57.341 42.857 0.00 0.00 0.00 2.24
934 1318 2.698855 TCTGCCTGCCAATCTTAGTC 57.301 50.000 0.00 0.00 0.00 2.59
935 1319 1.210478 TCTGCCTGCCAATCTTAGTCC 59.790 52.381 0.00 0.00 0.00 3.85
936 1320 1.211457 CTGCCTGCCAATCTTAGTCCT 59.789 52.381 0.00 0.00 0.00 3.85
977 1362 4.397417 CCCAGCTCTGCAAATATATTAGCC 59.603 45.833 11.76 0.08 0.00 3.93
978 1363 4.397417 CCAGCTCTGCAAATATATTAGCCC 59.603 45.833 11.76 0.00 0.00 5.19
979 1364 4.093998 CAGCTCTGCAAATATATTAGCCCG 59.906 45.833 11.76 3.02 0.00 6.13
980 1365 3.375299 GCTCTGCAAATATATTAGCCCGG 59.625 47.826 0.00 0.00 0.00 5.73
1023 1408 1.192534 CACTTCGTCAAACCTTCGCTC 59.807 52.381 0.00 0.00 0.00 5.03
1038 1423 0.178767 CGCTCAATCCCCACAGATCA 59.821 55.000 0.00 0.00 0.00 2.92
1039 1424 1.673168 GCTCAATCCCCACAGATCAC 58.327 55.000 0.00 0.00 0.00 3.06
1070 1455 4.066710 CGATTGATCGTCGTAGATAGCA 57.933 45.455 11.02 0.00 44.74 3.49
1282 1679 3.041940 GCCTCACCACGTCCGTTG 61.042 66.667 0.00 0.00 0.00 4.10
1303 1700 1.507141 CCGGAACACAGAGTGCAACC 61.507 60.000 0.00 0.00 37.80 3.77
1478 1881 4.112341 CGACAGTCCCGACGACCC 62.112 72.222 0.00 0.00 43.08 4.46
1587 2011 0.676151 GGAAGCTGGACTTGGAGCTG 60.676 60.000 0.00 0.00 44.97 4.24
1627 2051 0.611896 TCCGAGGCACTGATCACTCA 60.612 55.000 10.62 0.00 41.55 3.41
1672 2110 2.263077 CACAGGAACGCACTCATCTAC 58.737 52.381 0.00 0.00 0.00 2.59
1673 2111 1.893137 ACAGGAACGCACTCATCTACA 59.107 47.619 0.00 0.00 0.00 2.74
1674 2112 2.094494 ACAGGAACGCACTCATCTACAG 60.094 50.000 0.00 0.00 0.00 2.74
1675 2113 2.094494 CAGGAACGCACTCATCTACAGT 60.094 50.000 0.00 0.00 0.00 3.55
1676 2114 3.128764 CAGGAACGCACTCATCTACAGTA 59.871 47.826 0.00 0.00 0.00 2.74
1689 2127 7.978414 ACTCATCTACAGTATATACATGCATGC 59.022 37.037 26.53 11.82 0.00 4.06
1690 2128 7.839907 TCATCTACAGTATATACATGCATGCA 58.160 34.615 26.53 25.04 0.00 3.96
1699 2155 3.546009 ATGCATGCATGGGCTTCC 58.454 55.556 31.74 10.52 41.91 3.46
1701 2157 1.399744 ATGCATGCATGGGCTTCCTG 61.400 55.000 31.74 0.94 41.91 3.86
1702 2158 1.755395 GCATGCATGGGCTTCCTGA 60.755 57.895 27.34 0.00 41.91 3.86
1703 2159 1.324740 GCATGCATGGGCTTCCTGAA 61.325 55.000 27.34 0.00 41.91 3.02
1704 2160 0.458669 CATGCATGGGCTTCCTGAAC 59.541 55.000 19.40 0.00 41.91 3.18
1714 2170 2.766828 GGCTTCCTGAACTCCTAGCTAA 59.233 50.000 0.00 0.00 0.00 3.09
1739 2195 9.463443 AATATTACTTCAGTTCTTTTGTTGCAC 57.537 29.630 0.00 0.00 0.00 4.57
1740 2196 6.509418 TTACTTCAGTTCTTTTGTTGCACT 57.491 33.333 0.00 0.00 0.00 4.40
1741 2197 4.986622 ACTTCAGTTCTTTTGTTGCACTC 58.013 39.130 0.00 0.00 0.00 3.51
1750 2210 7.811236 AGTTCTTTTGTTGCACTCAATATCATG 59.189 33.333 4.66 0.00 34.29 3.07
1751 2211 6.094719 TCTTTTGTTGCACTCAATATCATGC 58.905 36.000 4.66 0.00 38.59 4.06
1771 2231 4.449131 TGCTTGCTATTCTCATCTTCTGG 58.551 43.478 0.00 0.00 0.00 3.86
1822 2284 1.804151 TCGCCATAACAACAAGAGCAC 59.196 47.619 0.00 0.00 0.00 4.40
1838 2304 2.077155 GCACATGCTTTGACGTATCG 57.923 50.000 0.00 0.00 38.21 2.92
1839 2305 1.658596 GCACATGCTTTGACGTATCGA 59.341 47.619 0.00 0.00 38.21 3.59
1862 2328 6.479990 CGAATTGAATGTACATGGAGAGCTAA 59.520 38.462 9.63 0.00 0.00 3.09
2006 2476 4.455533 TGAACTTGCACTAAACAGCCTATG 59.544 41.667 0.00 0.00 0.00 2.23
2007 2477 4.286297 ACTTGCACTAAACAGCCTATGA 57.714 40.909 0.00 0.00 0.00 2.15
2008 2478 4.848357 ACTTGCACTAAACAGCCTATGAT 58.152 39.130 0.00 0.00 0.00 2.45
2009 2479 5.989477 ACTTGCACTAAACAGCCTATGATA 58.011 37.500 0.00 0.00 0.00 2.15
2010 2480 6.595682 ACTTGCACTAAACAGCCTATGATAT 58.404 36.000 0.00 0.00 0.00 1.63
2011 2481 7.735917 ACTTGCACTAAACAGCCTATGATATA 58.264 34.615 0.00 0.00 0.00 0.86
2012 2482 8.378565 ACTTGCACTAAACAGCCTATGATATAT 58.621 33.333 0.00 0.00 0.00 0.86
2013 2483 9.224267 CTTGCACTAAACAGCCTATGATATATT 57.776 33.333 0.00 0.00 0.00 1.28
2054 2524 7.806014 GGATAAACGCAGTGACAAAGAAATTTA 59.194 33.333 0.00 0.00 45.00 1.40
2055 2525 9.176181 GATAAACGCAGTGACAAAGAAATTTAA 57.824 29.630 0.00 0.00 45.00 1.52
2116 2586 7.121168 ACAAACACATGGACCTGATAATTACAG 59.879 37.037 0.00 7.63 35.43 2.74
2151 2621 3.896648 TGAATCAAAGACGACAAAGGC 57.103 42.857 0.00 0.00 0.00 4.35
2157 2631 3.692101 TCAAAGACGACAAAGGCAAGAAA 59.308 39.130 0.00 0.00 0.00 2.52
2215 2689 3.146847 CCTGTGGTGTTTAGTTCCTTCC 58.853 50.000 0.00 0.00 0.00 3.46
2230 2704 2.682856 TCCTTCCGCATGTTCTTAATGC 59.317 45.455 0.00 0.00 45.62 3.56
2283 2757 4.526438 AATGGAAGGTAGGAAAGATGGG 57.474 45.455 0.00 0.00 0.00 4.00
2296 2770 2.789409 AGATGGGGAGTGTAACAAGC 57.211 50.000 0.00 0.00 41.43 4.01
2368 2842 7.177498 TGAAATTCCGTCATTTGATAGATCG 57.823 36.000 0.00 0.00 0.00 3.69
2412 2886 2.224867 ACACCTCCATTTCCAACCTCAG 60.225 50.000 0.00 0.00 0.00 3.35
2463 2937 5.308825 CCTTTCTCCATAGTTGAGTTGTGT 58.691 41.667 0.00 0.00 0.00 3.72
2520 2994 4.277174 TGTTAGCGGCAAATCTTCTTCAAA 59.723 37.500 1.45 0.00 0.00 2.69
2539 3013 8.730680 TCTTCAAACTCATGTAAAATTAGCCTC 58.269 33.333 0.00 0.00 0.00 4.70
2540 3014 7.072177 TCAAACTCATGTAAAATTAGCCTCG 57.928 36.000 0.00 0.00 0.00 4.63
2541 3015 5.485662 AACTCATGTAAAATTAGCCTCGC 57.514 39.130 0.00 0.00 0.00 5.03
2542 3016 4.770795 ACTCATGTAAAATTAGCCTCGCT 58.229 39.130 0.00 0.00 43.41 4.93
2543 3017 4.572389 ACTCATGTAAAATTAGCCTCGCTG 59.428 41.667 0.00 0.00 40.10 5.18
2544 3018 3.876914 TCATGTAAAATTAGCCTCGCTGG 59.123 43.478 0.00 0.00 40.10 4.85
2554 3028 3.150335 CTCGCTGGCAGCTCCCTA 61.150 66.667 34.17 14.90 39.60 3.53
2555 3029 3.438017 CTCGCTGGCAGCTCCCTAC 62.438 68.421 34.17 6.93 39.60 3.18
2556 3030 3.465403 CGCTGGCAGCTCCCTACT 61.465 66.667 34.17 0.00 39.60 2.57
2557 3031 2.993853 GCTGGCAGCTCCCTACTT 59.006 61.111 31.37 0.00 38.45 2.24
2558 3032 1.153269 GCTGGCAGCTCCCTACTTC 60.153 63.158 31.37 0.00 38.45 3.01
2559 3033 1.903877 GCTGGCAGCTCCCTACTTCA 61.904 60.000 31.37 0.00 38.45 3.02
2560 3034 0.835941 CTGGCAGCTCCCTACTTCAT 59.164 55.000 0.00 0.00 0.00 2.57
2561 3035 0.833287 TGGCAGCTCCCTACTTCATC 59.167 55.000 0.00 0.00 0.00 2.92
2562 3036 1.127343 GGCAGCTCCCTACTTCATCT 58.873 55.000 0.00 0.00 0.00 2.90
2563 3037 1.069978 GGCAGCTCCCTACTTCATCTC 59.930 57.143 0.00 0.00 0.00 2.75
2564 3038 1.269517 GCAGCTCCCTACTTCATCTCG 60.270 57.143 0.00 0.00 0.00 4.04
2565 3039 1.036707 AGCTCCCTACTTCATCTCGC 58.963 55.000 0.00 0.00 0.00 5.03
2566 3040 0.318275 GCTCCCTACTTCATCTCGCG 60.318 60.000 0.00 0.00 0.00 5.87
2567 3041 1.025812 CTCCCTACTTCATCTCGCGT 58.974 55.000 5.77 0.00 0.00 6.01
2568 3042 1.002251 CTCCCTACTTCATCTCGCGTC 60.002 57.143 5.77 0.00 0.00 5.19
2569 3043 0.317103 CCCTACTTCATCTCGCGTCG 60.317 60.000 5.77 0.00 0.00 5.12
2570 3044 0.377554 CCTACTTCATCTCGCGTCGT 59.622 55.000 5.77 0.00 0.00 4.34
2571 3045 1.595003 CCTACTTCATCTCGCGTCGTC 60.595 57.143 5.77 0.00 0.00 4.20
2572 3046 1.328069 CTACTTCATCTCGCGTCGTCT 59.672 52.381 5.77 0.00 0.00 4.18
2573 3047 0.097325 ACTTCATCTCGCGTCGTCTC 59.903 55.000 5.77 0.00 0.00 3.36
2574 3048 0.921662 CTTCATCTCGCGTCGTCTCG 60.922 60.000 5.77 0.00 0.00 4.04
2582 3056 4.717629 CGTCGTCTCGCTGGCCAA 62.718 66.667 7.01 0.00 0.00 4.52
2583 3057 2.125512 GTCGTCTCGCTGGCCAAT 60.126 61.111 7.01 0.00 0.00 3.16
2584 3058 2.125552 TCGTCTCGCTGGCCAATG 60.126 61.111 7.01 1.38 0.00 2.82
2585 3059 3.197790 CGTCTCGCTGGCCAATGG 61.198 66.667 7.01 0.00 0.00 3.16
2586 3060 2.045926 GTCTCGCTGGCCAATGGT 60.046 61.111 7.01 0.00 0.00 3.55
2587 3061 2.046023 TCTCGCTGGCCAATGGTG 60.046 61.111 7.01 1.55 0.00 4.17
2595 3069 2.091640 TGGCCAATGGTGGTGGTCAT 62.092 55.000 0.61 0.00 45.75 3.06
2596 3070 3.964153 TGGCCAATGGTGGTGGTCATC 62.964 57.143 0.61 0.00 45.75 2.92
2597 3071 3.985410 CCAATGGTGGTGGTCATCT 57.015 52.632 0.00 0.00 40.42 2.90
2598 3072 2.220653 CCAATGGTGGTGGTCATCTT 57.779 50.000 0.00 0.00 40.42 2.40
2599 3073 2.094675 CCAATGGTGGTGGTCATCTTC 58.905 52.381 0.00 0.00 40.42 2.87
2600 3074 2.291153 CCAATGGTGGTGGTCATCTTCT 60.291 50.000 0.00 0.00 40.42 2.85
2601 3075 3.424703 CAATGGTGGTGGTCATCTTCTT 58.575 45.455 0.00 0.00 0.00 2.52
2602 3076 2.859165 TGGTGGTGGTCATCTTCTTC 57.141 50.000 0.00 0.00 0.00 2.87
2603 3077 1.001974 TGGTGGTGGTCATCTTCTTCG 59.998 52.381 0.00 0.00 0.00 3.79
2604 3078 1.002087 GGTGGTGGTCATCTTCTTCGT 59.998 52.381 0.00 0.00 0.00 3.85
2605 3079 2.338500 GTGGTGGTCATCTTCTTCGTC 58.662 52.381 0.00 0.00 0.00 4.20
2606 3080 1.967779 TGGTGGTCATCTTCTTCGTCA 59.032 47.619 0.00 0.00 0.00 4.35
2607 3081 2.029020 TGGTGGTCATCTTCTTCGTCAG 60.029 50.000 0.00 0.00 0.00 3.51
2608 3082 2.231478 GGTGGTCATCTTCTTCGTCAGA 59.769 50.000 0.00 0.00 0.00 3.27
2609 3083 3.506810 GTGGTCATCTTCTTCGTCAGAG 58.493 50.000 0.00 0.00 31.12 3.35
2610 3084 3.191581 GTGGTCATCTTCTTCGTCAGAGA 59.808 47.826 0.00 0.00 31.12 3.10
2611 3085 4.019858 TGGTCATCTTCTTCGTCAGAGAT 58.980 43.478 0.00 0.00 31.12 2.75
2612 3086 4.142293 TGGTCATCTTCTTCGTCAGAGATG 60.142 45.833 12.23 12.23 37.91 2.90
2613 3087 4.358851 GTCATCTTCTTCGTCAGAGATGG 58.641 47.826 15.88 4.56 37.55 3.51
2614 3088 2.949451 TCTTCTTCGTCAGAGATGGC 57.051 50.000 0.00 0.00 31.12 4.40
2615 3089 1.478510 TCTTCTTCGTCAGAGATGGCC 59.521 52.381 0.00 0.00 31.12 5.36
2616 3090 0.173481 TTCTTCGTCAGAGATGGCCG 59.827 55.000 0.00 0.00 31.12 6.13
2617 3091 1.227089 CTTCGTCAGAGATGGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
2618 3092 3.371097 TTCGTCAGAGATGGCCGGC 62.371 63.158 21.18 21.18 0.00 6.13
2619 3093 4.899239 CGTCAGAGATGGCCGGCC 62.899 72.222 39.40 39.40 0.00 6.13
2634 3108 4.232310 GCCAGAGGCTTGGTGATC 57.768 61.111 14.43 0.00 46.69 2.92
2635 3109 1.817099 GCCAGAGGCTTGGTGATCG 60.817 63.158 14.43 0.00 46.69 3.69
2636 3110 1.153289 CCAGAGGCTTGGTGATCGG 60.153 63.158 7.35 0.00 33.38 4.18
2637 3111 1.617018 CCAGAGGCTTGGTGATCGGA 61.617 60.000 7.35 0.00 33.38 4.55
2638 3112 0.467384 CAGAGGCTTGGTGATCGGAT 59.533 55.000 0.00 0.00 0.00 4.18
2639 3113 0.755686 AGAGGCTTGGTGATCGGATC 59.244 55.000 11.07 11.07 0.00 3.36
2640 3114 0.755686 GAGGCTTGGTGATCGGATCT 59.244 55.000 18.16 0.00 0.00 2.75
2641 3115 0.755686 AGGCTTGGTGATCGGATCTC 59.244 55.000 18.16 14.37 0.00 2.75
2642 3116 0.598680 GGCTTGGTGATCGGATCTCG 60.599 60.000 18.16 4.70 40.90 4.04
2657 3131 4.374843 GATCTCGAGATCCATCATCCAG 57.625 50.000 35.46 0.00 43.85 3.86
2658 3132 3.235750 TCTCGAGATCCATCATCCAGT 57.764 47.619 12.08 0.00 30.71 4.00
2659 3133 3.153130 TCTCGAGATCCATCATCCAGTC 58.847 50.000 12.08 0.00 30.71 3.51
2660 3134 2.230992 CTCGAGATCCATCATCCAGTCC 59.769 54.545 6.58 0.00 30.71 3.85
2661 3135 1.274728 CGAGATCCATCATCCAGTCCC 59.725 57.143 0.00 0.00 30.71 4.46
2662 3136 1.274728 GAGATCCATCATCCAGTCCCG 59.725 57.143 0.00 0.00 30.71 5.14
2663 3137 0.322975 GATCCATCATCCAGTCCCGG 59.677 60.000 0.00 0.00 0.00 5.73
2664 3138 1.772819 ATCCATCATCCAGTCCCGGC 61.773 60.000 0.00 0.00 0.00 6.13
2665 3139 2.446848 CCATCATCCAGTCCCGGCT 61.447 63.158 0.00 0.00 0.00 5.52
2666 3140 1.227764 CATCATCCAGTCCCGGCTG 60.228 63.158 0.00 0.00 36.31 4.85
2667 3141 3.112205 ATCATCCAGTCCCGGCTGC 62.112 63.158 0.00 0.00 35.28 5.25
2672 3146 4.379243 CAGTCCCGGCTGCGAGTT 62.379 66.667 0.00 0.00 0.00 3.01
2673 3147 4.379243 AGTCCCGGCTGCGAGTTG 62.379 66.667 0.00 0.00 0.00 3.16
2692 3166 4.360405 GGGGACATGGTTGCCGGT 62.360 66.667 1.90 0.00 0.00 5.28
2693 3167 3.061848 GGGACATGGTTGCCGGTG 61.062 66.667 1.90 0.00 0.00 4.94
2694 3168 2.033448 GGACATGGTTGCCGGTGA 59.967 61.111 1.90 0.00 0.00 4.02
2695 3169 1.602323 GGACATGGTTGCCGGTGAA 60.602 57.895 1.90 0.00 0.00 3.18
2696 3170 1.175983 GGACATGGTTGCCGGTGAAA 61.176 55.000 1.90 0.00 0.00 2.69
2697 3171 0.671251 GACATGGTTGCCGGTGAAAA 59.329 50.000 1.90 0.00 0.00 2.29
2698 3172 0.387565 ACATGGTTGCCGGTGAAAAC 59.612 50.000 1.90 3.07 0.00 2.43
2699 3173 0.319469 CATGGTTGCCGGTGAAAACC 60.319 55.000 18.09 18.09 43.07 3.27
2707 3181 3.740513 GGTGAAAACCGAGCCGTT 58.259 55.556 0.00 0.00 0.00 4.44
2708 3182 1.281656 GGTGAAAACCGAGCCGTTG 59.718 57.895 0.00 0.00 0.00 4.10
2709 3183 1.281656 GTGAAAACCGAGCCGTTGG 59.718 57.895 0.00 0.00 0.00 3.77
2730 3204 3.627218 GCGATGGCGGCGTTCTAC 61.627 66.667 9.37 0.00 38.16 2.59
2731 3205 3.320078 CGATGGCGGCGTTCTACG 61.320 66.667 9.37 0.00 45.88 3.51
2741 3215 3.406682 CGTTCTACGCCGTTACCTT 57.593 52.632 0.00 0.00 33.65 3.50
2742 3216 0.986992 CGTTCTACGCCGTTACCTTG 59.013 55.000 0.00 0.00 33.65 3.61
2743 3217 1.666888 CGTTCTACGCCGTTACCTTGT 60.667 52.381 0.00 0.00 33.65 3.16
2744 3218 2.407090 GTTCTACGCCGTTACCTTGTT 58.593 47.619 0.00 0.00 0.00 2.83
2745 3219 2.068837 TCTACGCCGTTACCTTGTTG 57.931 50.000 0.00 0.00 0.00 3.33
2746 3220 1.073177 CTACGCCGTTACCTTGTTGG 58.927 55.000 0.00 0.00 42.93 3.77
2747 3221 0.678395 TACGCCGTTACCTTGTTGGA 59.322 50.000 0.00 0.00 39.71 3.53
2748 3222 0.601841 ACGCCGTTACCTTGTTGGAG 60.602 55.000 0.00 0.00 39.71 3.86
2749 3223 1.296056 CGCCGTTACCTTGTTGGAGG 61.296 60.000 0.00 0.00 42.75 4.30
2750 3224 1.583495 GCCGTTACCTTGTTGGAGGC 61.583 60.000 0.00 0.00 40.65 4.70
2751 3225 0.250553 CCGTTACCTTGTTGGAGGCA 60.251 55.000 0.00 0.00 40.65 4.75
2752 3226 1.613255 CCGTTACCTTGTTGGAGGCAT 60.613 52.381 0.00 0.00 40.65 4.40
2753 3227 1.737793 CGTTACCTTGTTGGAGGCATC 59.262 52.381 0.00 0.00 40.65 3.91
2754 3228 1.737793 GTTACCTTGTTGGAGGCATCG 59.262 52.381 0.00 0.00 40.65 3.84
2755 3229 0.981183 TACCTTGTTGGAGGCATCGT 59.019 50.000 0.00 0.00 40.65 3.73
2756 3230 0.321653 ACCTTGTTGGAGGCATCGTC 60.322 55.000 0.00 0.00 40.65 4.20
2757 3231 0.321564 CCTTGTTGGAGGCATCGTCA 60.322 55.000 0.00 0.00 38.35 4.35
2758 3232 1.679944 CCTTGTTGGAGGCATCGTCAT 60.680 52.381 0.00 0.00 38.35 3.06
2759 3233 2.419990 CCTTGTTGGAGGCATCGTCATA 60.420 50.000 0.00 0.00 38.35 2.15
2760 3234 3.470709 CTTGTTGGAGGCATCGTCATAT 58.529 45.455 0.00 0.00 0.00 1.78
2761 3235 4.503123 CCTTGTTGGAGGCATCGTCATATA 60.503 45.833 0.00 0.00 38.35 0.86
2762 3236 4.681074 TGTTGGAGGCATCGTCATATAA 57.319 40.909 0.00 0.00 0.00 0.98
2763 3237 4.377021 TGTTGGAGGCATCGTCATATAAC 58.623 43.478 0.00 0.00 0.00 1.89
2764 3238 4.100963 TGTTGGAGGCATCGTCATATAACT 59.899 41.667 0.00 0.00 0.00 2.24
2765 3239 5.303333 TGTTGGAGGCATCGTCATATAACTA 59.697 40.000 0.00 0.00 0.00 2.24
2766 3240 5.386958 TGGAGGCATCGTCATATAACTAC 57.613 43.478 0.00 0.00 0.00 2.73
2767 3241 5.077564 TGGAGGCATCGTCATATAACTACT 58.922 41.667 0.00 0.00 0.00 2.57
2768 3242 5.048013 TGGAGGCATCGTCATATAACTACTG 60.048 44.000 0.00 0.00 0.00 2.74
2769 3243 5.047943 GGAGGCATCGTCATATAACTACTGT 60.048 44.000 0.00 0.00 0.00 3.55
2770 3244 6.015027 AGGCATCGTCATATAACTACTGTC 57.985 41.667 0.00 0.00 0.00 3.51
2771 3245 4.852104 GGCATCGTCATATAACTACTGTCG 59.148 45.833 0.00 0.00 0.00 4.35
2772 3246 5.334646 GGCATCGTCATATAACTACTGTCGA 60.335 44.000 0.00 0.00 35.58 4.20
2773 3247 5.564504 GCATCGTCATATAACTACTGTCGAC 59.435 44.000 9.11 9.11 34.37 4.20
2774 3248 5.663795 TCGTCATATAACTACTGTCGACC 57.336 43.478 14.12 0.00 0.00 4.79
2775 3249 4.512944 TCGTCATATAACTACTGTCGACCC 59.487 45.833 14.12 0.00 0.00 4.46
2776 3250 4.274214 CGTCATATAACTACTGTCGACCCA 59.726 45.833 14.12 0.00 0.00 4.51
2777 3251 5.517904 GTCATATAACTACTGTCGACCCAC 58.482 45.833 14.12 0.00 0.00 4.61
2778 3252 5.298777 GTCATATAACTACTGTCGACCCACT 59.701 44.000 14.12 0.00 0.00 4.00
2779 3253 5.530171 TCATATAACTACTGTCGACCCACTC 59.470 44.000 14.12 0.00 0.00 3.51
2780 3254 0.879765 AACTACTGTCGACCCACTCG 59.120 55.000 14.12 0.00 44.44 4.18
2781 3255 0.250640 ACTACTGTCGACCCACTCGT 60.251 55.000 14.12 3.33 43.45 4.18
2782 3256 0.168348 CTACTGTCGACCCACTCGTG 59.832 60.000 14.12 0.00 43.45 4.35
2783 3257 1.859427 TACTGTCGACCCACTCGTGC 61.859 60.000 14.12 0.00 43.45 5.34
2784 3258 2.910479 TGTCGACCCACTCGTGCT 60.910 61.111 14.12 0.00 43.45 4.40
2785 3259 2.126424 GTCGACCCACTCGTGCTC 60.126 66.667 3.51 0.00 43.45 4.26
2786 3260 2.282251 TCGACCCACTCGTGCTCT 60.282 61.111 0.00 0.00 43.45 4.09
2787 3261 2.126307 CGACCCACTCGTGCTCTG 60.126 66.667 0.00 0.00 37.64 3.35
2788 3262 2.262915 GACCCACTCGTGCTCTGG 59.737 66.667 0.00 0.00 0.00 3.86
2790 3264 4.087892 CCCACTCGTGCTCTGGGG 62.088 72.222 4.10 0.00 41.08 4.96
2791 3265 4.087892 CCACTCGTGCTCTGGGGG 62.088 72.222 0.00 0.00 0.00 5.40
2792 3266 2.997315 CACTCGTGCTCTGGGGGA 60.997 66.667 0.00 0.00 0.00 4.81
2793 3267 2.203788 ACTCGTGCTCTGGGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
2794 3268 1.841556 ACTCGTGCTCTGGGGGAAA 60.842 57.895 0.00 0.00 0.00 3.13
2795 3269 1.376037 CTCGTGCTCTGGGGGAAAC 60.376 63.158 0.00 0.00 0.00 2.78
2810 3284 2.197465 GGAAACCCTAGGATCTGGTGT 58.803 52.381 11.48 0.00 31.32 4.16
2811 3285 2.576648 GGAAACCCTAGGATCTGGTGTT 59.423 50.000 11.48 0.41 31.32 3.32
2812 3286 3.370633 GGAAACCCTAGGATCTGGTGTTC 60.371 52.174 11.48 6.05 31.32 3.18
2813 3287 1.880941 ACCCTAGGATCTGGTGTTCC 58.119 55.000 11.48 0.00 33.36 3.62
2814 3288 1.080498 ACCCTAGGATCTGGTGTTCCA 59.920 52.381 11.48 0.00 42.05 3.53
2823 3297 1.589630 TGGTGTTCCAGATCGGACG 59.410 57.895 5.89 0.00 46.36 4.79
2824 3298 0.896479 TGGTGTTCCAGATCGGACGA 60.896 55.000 5.89 0.00 46.36 4.20
2825 3299 0.460311 GGTGTTCCAGATCGGACGAT 59.540 55.000 6.95 6.95 46.36 3.73
2826 3300 1.560923 GTGTTCCAGATCGGACGATG 58.439 55.000 12.40 0.00 46.36 3.84
2827 3301 0.459899 TGTTCCAGATCGGACGATGG 59.540 55.000 12.40 9.80 46.36 3.51
2828 3302 0.876342 GTTCCAGATCGGACGATGGC 60.876 60.000 12.40 0.00 46.36 4.40
2829 3303 2.349969 TTCCAGATCGGACGATGGCG 62.350 60.000 12.40 0.28 46.36 5.69
2830 3304 2.355126 CAGATCGGACGATGGCGG 60.355 66.667 12.40 0.00 43.17 6.13
2846 3320 3.276846 GGCACTGCGGTGTCGTTT 61.277 61.111 26.00 0.00 44.65 3.60
2847 3321 2.248431 GCACTGCGGTGTCGTTTC 59.752 61.111 26.00 5.27 44.65 2.78
2848 3322 2.244651 GCACTGCGGTGTCGTTTCT 61.245 57.895 26.00 0.00 44.65 2.52
2849 3323 1.853319 CACTGCGGTGTCGTTTCTC 59.147 57.895 17.96 0.00 38.54 2.87
2850 3324 0.597637 CACTGCGGTGTCGTTTCTCT 60.598 55.000 17.96 0.00 38.54 3.10
2851 3325 0.318784 ACTGCGGTGTCGTTTCTCTC 60.319 55.000 0.00 0.00 38.89 3.20
2852 3326 0.039074 CTGCGGTGTCGTTTCTCTCT 60.039 55.000 0.00 0.00 38.89 3.10
2853 3327 0.387929 TGCGGTGTCGTTTCTCTCTT 59.612 50.000 0.00 0.00 38.89 2.85
2854 3328 0.784778 GCGGTGTCGTTTCTCTCTTG 59.215 55.000 0.00 0.00 38.89 3.02
2855 3329 1.419374 CGGTGTCGTTTCTCTCTTGG 58.581 55.000 0.00 0.00 0.00 3.61
2856 3330 1.000607 CGGTGTCGTTTCTCTCTTGGA 60.001 52.381 0.00 0.00 0.00 3.53
2857 3331 2.545113 CGGTGTCGTTTCTCTCTTGGAA 60.545 50.000 0.00 0.00 0.00 3.53
2858 3332 3.060602 GGTGTCGTTTCTCTCTTGGAAG 58.939 50.000 0.00 0.00 0.00 3.46
2859 3333 2.476997 GTGTCGTTTCTCTCTTGGAAGC 59.523 50.000 0.00 0.00 0.00 3.86
2860 3334 2.102420 TGTCGTTTCTCTCTTGGAAGCA 59.898 45.455 0.00 0.00 0.00 3.91
2861 3335 3.244215 TGTCGTTTCTCTCTTGGAAGCAT 60.244 43.478 0.00 0.00 0.00 3.79
2862 3336 3.369451 GTCGTTTCTCTCTTGGAAGCATC 59.631 47.826 0.00 0.00 0.00 3.91
2863 3337 2.346847 CGTTTCTCTCTTGGAAGCATCG 59.653 50.000 0.00 0.00 0.00 3.84
2864 3338 3.330267 GTTTCTCTCTTGGAAGCATCGT 58.670 45.455 0.00 0.00 0.00 3.73
2865 3339 3.685139 TTCTCTCTTGGAAGCATCGTT 57.315 42.857 0.00 0.00 0.00 3.85
2866 3340 3.685139 TCTCTCTTGGAAGCATCGTTT 57.315 42.857 0.00 0.00 0.00 3.60
2867 3341 3.329386 TCTCTCTTGGAAGCATCGTTTG 58.671 45.455 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.174389 ACAGCTCGGTGCATCAGTAG 59.826 55.000 0.00 0.00 45.94 2.57
1 2 0.108662 CACAGCTCGGTGCATCAGTA 60.109 55.000 0.00 0.00 45.94 2.74
2 3 1.375140 CACAGCTCGGTGCATCAGT 60.375 57.895 0.00 0.00 45.94 3.41
3 4 1.079612 TCACAGCTCGGTGCATCAG 60.080 57.895 0.00 0.00 45.94 2.90
4 5 1.079612 CTCACAGCTCGGTGCATCA 60.080 57.895 0.00 0.00 45.94 3.07
5 6 2.459442 GCTCACAGCTCGGTGCATC 61.459 63.158 4.74 0.00 45.94 3.91
6 7 2.435586 GCTCACAGCTCGGTGCAT 60.436 61.111 4.74 0.00 45.94 3.96
7 8 3.871248 CTGCTCACAGCTCGGTGCA 62.871 63.158 4.74 9.68 45.94 4.57
8 9 3.117171 CTGCTCACAGCTCGGTGC 61.117 66.667 0.00 0.87 42.97 5.01
31 32 0.749454 CCAGATGAGCCGAAAAGGGG 60.749 60.000 0.00 0.00 41.48 4.79
32 33 0.253044 TCCAGATGAGCCGAAAAGGG 59.747 55.000 0.00 0.00 41.48 3.95
33 34 1.065854 AGTCCAGATGAGCCGAAAAGG 60.066 52.381 0.00 0.00 44.97 3.11
34 35 2.005451 CAGTCCAGATGAGCCGAAAAG 58.995 52.381 0.00 0.00 0.00 2.27
35 36 1.339055 CCAGTCCAGATGAGCCGAAAA 60.339 52.381 0.00 0.00 0.00 2.29
36 37 0.250234 CCAGTCCAGATGAGCCGAAA 59.750 55.000 0.00 0.00 0.00 3.46
37 38 0.614697 TCCAGTCCAGATGAGCCGAA 60.615 55.000 0.00 0.00 0.00 4.30
38 39 1.000359 TCCAGTCCAGATGAGCCGA 60.000 57.895 0.00 0.00 0.00 5.54
39 40 1.440893 CTCCAGTCCAGATGAGCCG 59.559 63.158 0.00 0.00 0.00 5.52
40 41 1.145819 GCTCCAGTCCAGATGAGCC 59.854 63.158 0.00 0.00 43.40 4.70
41 42 4.852962 GCTCCAGTCCAGATGAGC 57.147 61.111 0.00 0.00 42.89 4.26
42 43 0.179116 CGTGCTCCAGTCCAGATGAG 60.179 60.000 0.00 0.00 0.00 2.90
43 44 1.607801 CCGTGCTCCAGTCCAGATGA 61.608 60.000 0.00 0.00 0.00 2.92
44 45 1.153489 CCGTGCTCCAGTCCAGATG 60.153 63.158 0.00 0.00 0.00 2.90
45 46 1.305297 TCCGTGCTCCAGTCCAGAT 60.305 57.895 0.00 0.00 0.00 2.90
46 47 2.117423 TCCGTGCTCCAGTCCAGA 59.883 61.111 0.00 0.00 0.00 3.86
47 48 2.262915 GTCCGTGCTCCAGTCCAG 59.737 66.667 0.00 0.00 0.00 3.86
48 49 2.435120 TAGGTCCGTGCTCCAGTCCA 62.435 60.000 0.00 0.00 0.00 4.02
49 50 1.668101 CTAGGTCCGTGCTCCAGTCC 61.668 65.000 0.00 0.00 0.00 3.85
50 51 0.680280 TCTAGGTCCGTGCTCCAGTC 60.680 60.000 0.00 0.00 0.00 3.51
51 52 0.251653 TTCTAGGTCCGTGCTCCAGT 60.252 55.000 0.00 0.00 0.00 4.00
52 53 0.173708 GTTCTAGGTCCGTGCTCCAG 59.826 60.000 0.00 0.00 0.00 3.86
53 54 0.541063 TGTTCTAGGTCCGTGCTCCA 60.541 55.000 0.00 0.00 0.00 3.86
54 55 0.173708 CTGTTCTAGGTCCGTGCTCC 59.826 60.000 0.00 0.00 0.00 4.70
55 56 0.173708 CCTGTTCTAGGTCCGTGCTC 59.826 60.000 0.00 0.00 42.00 4.26
56 57 2.277858 CCTGTTCTAGGTCCGTGCT 58.722 57.895 0.00 0.00 42.00 4.40
57 58 4.913126 CCTGTTCTAGGTCCGTGC 57.087 61.111 0.00 0.00 42.00 5.34
65 66 4.514441 CCAATTATCAGCAGCCTGTTCTAG 59.486 45.833 0.00 0.00 40.09 2.43
66 67 4.454678 CCAATTATCAGCAGCCTGTTCTA 58.545 43.478 0.00 0.00 40.09 2.10
67 68 3.285484 CCAATTATCAGCAGCCTGTTCT 58.715 45.455 0.00 0.00 40.09 3.01
68 69 2.360165 CCCAATTATCAGCAGCCTGTTC 59.640 50.000 0.00 0.00 40.09 3.18
69 70 2.381911 CCCAATTATCAGCAGCCTGTT 58.618 47.619 0.00 0.00 40.09 3.16
70 71 2.025863 GCCCAATTATCAGCAGCCTGT 61.026 52.381 0.00 0.00 40.09 4.00
71 72 0.672342 GCCCAATTATCAGCAGCCTG 59.328 55.000 0.00 0.00 40.54 4.85
72 73 0.259647 TGCCCAATTATCAGCAGCCT 59.740 50.000 0.00 0.00 0.00 4.58
73 74 1.335145 ATGCCCAATTATCAGCAGCC 58.665 50.000 0.00 0.00 38.89 4.85
74 75 3.415212 TCTATGCCCAATTATCAGCAGC 58.585 45.455 0.00 0.00 38.89 5.25
125 126 7.809546 TGATGATACTAGTAGAGTTGTGGAG 57.190 40.000 8.85 0.00 39.81 3.86
132 133 8.221251 TGTGAAGGATGATGATACTAGTAGAGT 58.779 37.037 8.85 0.00 42.69 3.24
135 136 8.855110 ACTTGTGAAGGATGATGATACTAGTAG 58.145 37.037 8.85 0.00 0.00 2.57
138 139 8.200120 TCAACTTGTGAAGGATGATGATACTAG 58.800 37.037 0.00 0.00 31.51 2.57
141 142 6.259608 CCTCAACTTGTGAAGGATGATGATAC 59.740 42.308 0.00 0.00 35.22 2.24
142 143 6.156775 TCCTCAACTTGTGAAGGATGATGATA 59.843 38.462 0.00 0.00 35.22 2.15
146 147 4.841422 CTCCTCAACTTGTGAAGGATGAT 58.159 43.478 5.28 0.00 35.22 2.45
148 149 2.746362 GCTCCTCAACTTGTGAAGGATG 59.254 50.000 5.28 0.00 35.22 3.51
150 151 1.270305 CGCTCCTCAACTTGTGAAGGA 60.270 52.381 4.88 4.88 35.22 3.36
151 152 1.151668 CGCTCCTCAACTTGTGAAGG 58.848 55.000 0.00 0.00 35.22 3.46
152 153 2.064762 CTCGCTCCTCAACTTGTGAAG 58.935 52.381 0.00 0.00 35.22 3.02
158 159 1.000283 CACTCACTCGCTCCTCAACTT 60.000 52.381 0.00 0.00 0.00 2.66
163 164 0.170116 CACTCACTCACTCGCTCCTC 59.830 60.000 0.00 0.00 0.00 3.71
169 170 1.080230 CCAGCCACTCACTCACTCG 60.080 63.158 0.00 0.00 0.00 4.18
205 211 5.418676 TGAAATCTTACGAGATGCATGACA 58.581 37.500 2.46 0.00 41.78 3.58
286 293 5.163663 CCTTGTAGACTGAGCTCTTGTCTAG 60.164 48.000 31.41 25.49 41.93 2.43
291 298 3.671971 CGTCCTTGTAGACTGAGCTCTTG 60.672 52.174 16.19 10.33 34.46 3.02
301 308 0.971386 TTGTCCCCGTCCTTGTAGAC 59.029 55.000 0.00 0.00 0.00 2.59
428 435 4.966787 TGCGTTTGGACCCTGGGC 62.967 66.667 14.08 5.57 0.00 5.36
499 506 1.135024 AGCCAAGCGTGCCAATTAATG 60.135 47.619 0.00 0.00 0.00 1.90
503 510 1.005867 CAAGCCAAGCGTGCCAATT 60.006 52.632 0.00 0.00 30.89 2.32
515 522 2.604686 AGGTCGCCTCTCAAGCCA 60.605 61.111 0.00 0.00 0.00 4.75
517 524 1.446966 GACAGGTCGCCTCTCAAGC 60.447 63.158 0.00 0.00 0.00 4.01
525 532 3.023949 ATGGCTGAGACAGGTCGCC 62.024 63.158 0.00 9.14 36.95 5.54
542 549 0.773644 GTATGGGAGGATGGGCACAT 59.226 55.000 0.00 0.00 40.85 3.21
606 613 3.367292 GCACCATCACACATAAACCCTTG 60.367 47.826 0.00 0.00 0.00 3.61
607 614 2.825532 GCACCATCACACATAAACCCTT 59.174 45.455 0.00 0.00 0.00 3.95
608 615 2.224992 TGCACCATCACACATAAACCCT 60.225 45.455 0.00 0.00 0.00 4.34
609 616 2.166829 TGCACCATCACACATAAACCC 58.833 47.619 0.00 0.00 0.00 4.11
624 631 6.076981 AGGATCGATGAAATTAATTGCACC 57.923 37.500 11.20 7.70 0.00 5.01
660 667 3.156288 TCATCACTATACTAGCCGGCT 57.844 47.619 34.85 34.85 0.00 5.52
671 903 3.645212 ACTAGCACAGGCATCATCACTAT 59.355 43.478 0.00 0.00 44.61 2.12
701 938 6.690194 ATCTGAAATATCCTCTTGTGCAAC 57.310 37.500 0.00 0.00 37.35 4.17
790 1172 3.185246 AGCTGTAGATATGGTGTGCAC 57.815 47.619 10.75 10.75 0.00 4.57
875 1259 3.003480 AGCAGCTCCGTGAATAAAAGAC 58.997 45.455 0.00 0.00 0.00 3.01
888 1272 2.894387 GTCATCGCCAGCAGCTCC 60.894 66.667 0.00 0.00 40.39 4.70
889 1273 1.742880 TTGTCATCGCCAGCAGCTC 60.743 57.895 0.00 0.00 40.39 4.09
930 1314 2.648304 ACAGTGACAGGGACTAGGACTA 59.352 50.000 0.00 0.00 36.02 2.59
931 1315 1.429687 ACAGTGACAGGGACTAGGACT 59.570 52.381 0.00 0.00 36.02 3.85
932 1316 1.819903 GACAGTGACAGGGACTAGGAC 59.180 57.143 0.00 0.00 36.02 3.85
933 1317 1.272536 GGACAGTGACAGGGACTAGGA 60.273 57.143 0.00 0.00 36.02 2.94
934 1318 1.187087 GGACAGTGACAGGGACTAGG 58.813 60.000 0.00 0.00 36.02 3.02
935 1319 1.187087 GGGACAGTGACAGGGACTAG 58.813 60.000 0.00 0.00 36.02 2.57
936 1320 0.252103 GGGGACAGTGACAGGGACTA 60.252 60.000 0.00 0.00 36.02 2.59
1023 1408 2.742428 ATGGTGATCTGTGGGGATTG 57.258 50.000 0.00 0.00 0.00 2.67
1070 1455 1.526575 CTCCATGTTGCCGCAACCTT 61.527 55.000 28.88 16.31 42.96 3.50
1278 1675 2.280524 TCTGTGTTCCGGGCAACG 60.281 61.111 0.00 0.00 43.80 4.10
1280 1677 1.227823 CACTCTGTGTTCCGGGCAA 60.228 57.895 0.00 0.00 0.00 4.52
1282 1679 3.050275 GCACTCTGTGTTCCGGGC 61.050 66.667 0.00 0.00 35.75 6.13
1363 1760 2.202703 GTGCCGGCCGTAGTACAG 60.203 66.667 26.77 7.77 0.00 2.74
1469 1872 3.054503 AGTCGTCAGGGTCGTCGG 61.055 66.667 0.00 0.00 0.00 4.79
1478 1881 1.143305 CAGTTCCAAGCAGTCGTCAG 58.857 55.000 0.00 0.00 0.00 3.51
1689 2127 0.622665 AGGAGTTCAGGAAGCCCATG 59.377 55.000 0.00 0.00 33.88 3.66
1690 2128 2.122768 CTAGGAGTTCAGGAAGCCCAT 58.877 52.381 0.00 0.00 33.88 4.00
1699 2155 9.906660 CTGAAGTAATATTAGCTAGGAGTTCAG 57.093 37.037 16.84 16.84 32.57 3.02
1703 2159 9.649316 AGAACTGAAGTAATATTAGCTAGGAGT 57.351 33.333 0.00 0.00 0.00 3.85
1714 2170 8.850156 AGTGCAACAAAAGAACTGAAGTAATAT 58.150 29.630 0.00 0.00 41.43 1.28
1738 2194 7.222161 TGAGAATAGCAAGCATGATATTGAGT 58.778 34.615 16.34 2.14 45.52 3.41
1739 2195 7.668525 TGAGAATAGCAAGCATGATATTGAG 57.331 36.000 16.34 0.00 45.52 3.02
1740 2196 8.101419 AGATGAGAATAGCAAGCATGATATTGA 58.899 33.333 16.34 2.08 45.52 2.57
1741 2197 8.270080 AGATGAGAATAGCAAGCATGATATTG 57.730 34.615 16.34 0.00 45.52 1.90
1750 2210 4.272991 CACCAGAAGATGAGAATAGCAAGC 59.727 45.833 0.00 0.00 0.00 4.01
1751 2211 4.272991 GCACCAGAAGATGAGAATAGCAAG 59.727 45.833 0.00 0.00 0.00 4.01
1822 2284 5.142635 TCAATTCGATACGTCAAAGCATG 57.857 39.130 0.00 0.00 0.00 4.06
1832 2298 6.640907 TCTCCATGTACATTCAATTCGATACG 59.359 38.462 5.37 0.00 0.00 3.06
1835 2301 5.468072 GCTCTCCATGTACATTCAATTCGAT 59.532 40.000 5.37 0.00 0.00 3.59
1836 2302 4.811024 GCTCTCCATGTACATTCAATTCGA 59.189 41.667 5.37 0.00 0.00 3.71
1837 2303 4.813161 AGCTCTCCATGTACATTCAATTCG 59.187 41.667 5.37 0.00 0.00 3.34
1838 2304 7.792374 TTAGCTCTCCATGTACATTCAATTC 57.208 36.000 5.37 0.00 0.00 2.17
1839 2305 8.757982 ATTTAGCTCTCCATGTACATTCAATT 57.242 30.769 5.37 0.00 0.00 2.32
1862 2328 8.184192 CGAATCAAAACAAGAGCCAAGTATATT 58.816 33.333 0.00 0.00 0.00 1.28
1911 2381 6.430000 GCAATCCTACACTTTTGTTCTTCCTA 59.570 38.462 0.00 0.00 37.15 2.94
1912 2382 5.241728 GCAATCCTACACTTTTGTTCTTCCT 59.758 40.000 0.00 0.00 37.15 3.36
2012 2482 9.936759 TGCGTTTATCCTATTATGTGATATCAA 57.063 29.630 7.07 0.00 0.00 2.57
2013 2483 9.586435 CTGCGTTTATCCTATTATGTGATATCA 57.414 33.333 0.00 0.00 0.00 2.15
2054 2524 9.099454 GTTCATTTGCAGTACTATTAGCTAGTT 57.901 33.333 0.00 0.00 41.10 2.24
2055 2525 8.478877 AGTTCATTTGCAGTACTATTAGCTAGT 58.521 33.333 0.00 0.00 43.28 2.57
2116 2586 7.643528 CTTTGATTCAAAGTCCTTTTTAGGC 57.356 36.000 24.72 0.00 43.85 3.93
2142 2612 5.356882 TGAATAGTTTCTTGCCTTTGTCG 57.643 39.130 0.00 0.00 32.78 4.35
2146 2616 5.047731 GGAGCTTGAATAGTTTCTTGCCTTT 60.048 40.000 0.00 0.00 34.01 3.11
2151 2621 5.106038 TGCATGGAGCTTGAATAGTTTCTTG 60.106 40.000 0.00 0.00 45.94 3.02
2184 2658 0.317479 ACACCACAGGTTCGTAGCTC 59.683 55.000 0.00 0.00 31.02 4.09
2283 2757 5.135508 TGAGAAGTAGCTTGTTACACTCC 57.864 43.478 0.00 0.00 33.01 3.85
2296 2770 6.434652 TCTCCTTGTAGTTCCTTGAGAAGTAG 59.565 42.308 0.00 0.00 40.35 2.57
2351 2825 5.122512 ACCTACGATCTATCAAATGACGG 57.877 43.478 0.00 0.00 0.00 4.79
2412 2886 1.494960 AGAGGCTCATTGAGGAGGAC 58.505 55.000 18.26 0.00 35.41 3.85
2488 2962 1.225855 TGCCGCTAACACAAAGACAG 58.774 50.000 0.00 0.00 0.00 3.51
2520 2994 4.572389 CAGCGAGGCTAATTTTACATGAGT 59.428 41.667 0.00 0.00 36.40 3.41
2540 3014 1.153269 GAAGTAGGGAGCTGCCAGC 60.153 63.158 27.56 17.72 42.84 4.85
2541 3015 0.835941 ATGAAGTAGGGAGCTGCCAG 59.164 55.000 27.56 0.00 38.95 4.85
2542 3016 0.833287 GATGAAGTAGGGAGCTGCCA 59.167 55.000 27.56 9.71 38.95 4.92
2543 3017 1.069978 GAGATGAAGTAGGGAGCTGCC 59.930 57.143 18.04 18.04 0.00 4.85
2544 3018 1.269517 CGAGATGAAGTAGGGAGCTGC 60.270 57.143 0.00 0.00 0.00 5.25
2545 3019 1.269517 GCGAGATGAAGTAGGGAGCTG 60.270 57.143 0.00 0.00 0.00 4.24
2546 3020 1.036707 GCGAGATGAAGTAGGGAGCT 58.963 55.000 0.00 0.00 0.00 4.09
2547 3021 0.318275 CGCGAGATGAAGTAGGGAGC 60.318 60.000 0.00 0.00 0.00 4.70
2548 3022 1.002251 GACGCGAGATGAAGTAGGGAG 60.002 57.143 15.93 0.00 0.00 4.30
2549 3023 1.022735 GACGCGAGATGAAGTAGGGA 58.977 55.000 15.93 0.00 0.00 4.20
2550 3024 0.317103 CGACGCGAGATGAAGTAGGG 60.317 60.000 15.93 0.00 0.00 3.53
2551 3025 0.377554 ACGACGCGAGATGAAGTAGG 59.622 55.000 15.93 0.00 0.00 3.18
2552 3026 1.328069 AGACGACGCGAGATGAAGTAG 59.672 52.381 15.93 0.00 0.00 2.57
2553 3027 1.326852 GAGACGACGCGAGATGAAGTA 59.673 52.381 15.93 0.00 0.00 2.24
2554 3028 0.097325 GAGACGACGCGAGATGAAGT 59.903 55.000 15.93 0.96 0.00 3.01
2555 3029 0.921662 CGAGACGACGCGAGATGAAG 60.922 60.000 15.93 0.00 41.48 3.02
2556 3030 1.060465 CGAGACGACGCGAGATGAA 59.940 57.895 15.93 0.00 41.48 2.57
2557 3031 2.701606 CGAGACGACGCGAGATGA 59.298 61.111 15.93 0.00 41.48 2.92
2565 3039 3.989698 ATTGGCCAGCGAGACGACG 62.990 63.158 5.11 0.00 0.00 5.12
2566 3040 2.125512 ATTGGCCAGCGAGACGAC 60.126 61.111 5.11 0.00 0.00 4.34
2567 3041 2.125552 CATTGGCCAGCGAGACGA 60.126 61.111 5.11 0.00 0.00 4.20
2568 3042 3.197790 CCATTGGCCAGCGAGACG 61.198 66.667 5.11 0.00 0.00 4.18
2569 3043 2.045926 ACCATTGGCCAGCGAGAC 60.046 61.111 5.11 0.00 0.00 3.36
2570 3044 2.046023 CACCATTGGCCAGCGAGA 60.046 61.111 5.11 0.00 0.00 4.04
2571 3045 3.136123 CCACCATTGGCCAGCGAG 61.136 66.667 5.11 0.00 35.56 5.03
2580 3054 3.077484 AGAAGATGACCACCACCATTG 57.923 47.619 0.00 0.00 0.00 2.82
2581 3055 3.690460 GAAGAAGATGACCACCACCATT 58.310 45.455 0.00 0.00 0.00 3.16
2582 3056 2.355108 CGAAGAAGATGACCACCACCAT 60.355 50.000 0.00 0.00 0.00 3.55
2583 3057 1.001974 CGAAGAAGATGACCACCACCA 59.998 52.381 0.00 0.00 0.00 4.17
2584 3058 1.002087 ACGAAGAAGATGACCACCACC 59.998 52.381 0.00 0.00 0.00 4.61
2585 3059 2.288825 TGACGAAGAAGATGACCACCAC 60.289 50.000 0.00 0.00 0.00 4.16
2586 3060 1.967779 TGACGAAGAAGATGACCACCA 59.032 47.619 0.00 0.00 0.00 4.17
2587 3061 2.231478 TCTGACGAAGAAGATGACCACC 59.769 50.000 0.00 0.00 29.54 4.61
2588 3062 3.191581 TCTCTGACGAAGAAGATGACCAC 59.808 47.826 0.00 0.00 33.37 4.16
2589 3063 3.421844 TCTCTGACGAAGAAGATGACCA 58.578 45.455 0.00 0.00 33.37 4.02
2590 3064 4.358851 CATCTCTGACGAAGAAGATGACC 58.641 47.826 13.53 0.00 39.94 4.02
2591 3065 4.358851 CCATCTCTGACGAAGAAGATGAC 58.641 47.826 17.77 0.00 39.94 3.06
2592 3066 3.181482 GCCATCTCTGACGAAGAAGATGA 60.181 47.826 17.77 4.13 39.94 2.92
2593 3067 3.122297 GCCATCTCTGACGAAGAAGATG 58.878 50.000 12.47 12.47 38.71 2.90
2594 3068 2.102252 GGCCATCTCTGACGAAGAAGAT 59.898 50.000 0.00 0.00 33.37 2.40
2595 3069 1.478510 GGCCATCTCTGACGAAGAAGA 59.521 52.381 0.00 0.00 33.37 2.87
2596 3070 1.800655 CGGCCATCTCTGACGAAGAAG 60.801 57.143 2.24 0.00 33.37 2.85
2597 3071 0.173481 CGGCCATCTCTGACGAAGAA 59.827 55.000 2.24 0.00 33.37 2.52
2598 3072 1.667154 CCGGCCATCTCTGACGAAGA 61.667 60.000 2.24 0.00 0.00 2.87
2599 3073 1.227089 CCGGCCATCTCTGACGAAG 60.227 63.158 2.24 0.00 0.00 3.79
2600 3074 2.892640 CCGGCCATCTCTGACGAA 59.107 61.111 2.24 0.00 0.00 3.85
2601 3075 3.838271 GCCGGCCATCTCTGACGA 61.838 66.667 18.11 0.00 0.00 4.20
2602 3076 4.899239 GGCCGGCCATCTCTGACG 62.899 72.222 40.73 0.00 35.81 4.35
2603 3077 3.746949 CTGGCCGGCCATCTCTGAC 62.747 68.421 46.65 17.80 46.15 3.51
2604 3078 3.473647 CTGGCCGGCCATCTCTGA 61.474 66.667 46.65 23.88 46.15 3.27
2605 3079 3.457625 CTCTGGCCGGCCATCTCTG 62.458 68.421 46.65 33.80 46.15 3.35
2606 3080 3.160047 CTCTGGCCGGCCATCTCT 61.160 66.667 46.65 0.00 46.15 3.10
2607 3081 4.247380 CCTCTGGCCGGCCATCTC 62.247 72.222 46.65 21.06 46.15 2.75
2618 3092 1.153289 CCGATCACCAAGCCTCTGG 60.153 63.158 0.00 0.00 42.68 3.86
2619 3093 0.467384 ATCCGATCACCAAGCCTCTG 59.533 55.000 0.00 0.00 0.00 3.35
2620 3094 0.755686 GATCCGATCACCAAGCCTCT 59.244 55.000 3.33 0.00 0.00 3.69
2621 3095 0.755686 AGATCCGATCACCAAGCCTC 59.244 55.000 11.01 0.00 0.00 4.70
2622 3096 0.755686 GAGATCCGATCACCAAGCCT 59.244 55.000 11.01 0.00 0.00 4.58
2623 3097 0.598680 CGAGATCCGATCACCAAGCC 60.599 60.000 11.01 0.00 41.76 4.35
2624 3098 0.385751 TCGAGATCCGATCACCAAGC 59.614 55.000 11.01 0.00 43.23 4.01
2637 3111 3.763360 GACTGGATGATGGATCTCGAGAT 59.237 47.826 27.63 27.63 37.51 2.75
2638 3112 3.153130 GACTGGATGATGGATCTCGAGA 58.847 50.000 19.19 19.19 0.00 4.04
2639 3113 2.230992 GGACTGGATGATGGATCTCGAG 59.769 54.545 5.93 5.93 0.00 4.04
2640 3114 2.242926 GGACTGGATGATGGATCTCGA 58.757 52.381 0.00 0.00 0.00 4.04
2641 3115 1.274728 GGGACTGGATGATGGATCTCG 59.725 57.143 0.00 0.00 0.00 4.04
2642 3116 1.274728 CGGGACTGGATGATGGATCTC 59.725 57.143 0.00 0.00 0.00 2.75
2643 3117 1.346062 CGGGACTGGATGATGGATCT 58.654 55.000 0.00 0.00 0.00 2.75
2644 3118 0.322975 CCGGGACTGGATGATGGATC 59.677 60.000 0.00 0.00 0.00 3.36
2645 3119 1.772819 GCCGGGACTGGATGATGGAT 61.773 60.000 2.18 0.00 0.00 3.41
2646 3120 2.443394 GCCGGGACTGGATGATGGA 61.443 63.158 2.18 0.00 0.00 3.41
2647 3121 2.111878 GCCGGGACTGGATGATGG 59.888 66.667 2.18 0.00 0.00 3.51
2648 3122 3.234349 AGCCGGGACTGGATGATG 58.766 61.111 2.18 0.00 0.00 3.07
2655 3129 4.379243 AACTCGCAGCCGGGACTG 62.379 66.667 2.18 3.78 36.99 3.51
2656 3130 4.379243 CAACTCGCAGCCGGGACT 62.379 66.667 2.18 0.00 36.99 3.85
2675 3149 4.360405 ACCGGCAACCATGTCCCC 62.360 66.667 0.00 0.00 0.00 4.81
2676 3150 3.061848 CACCGGCAACCATGTCCC 61.062 66.667 0.00 0.00 0.00 4.46
2677 3151 1.175983 TTTCACCGGCAACCATGTCC 61.176 55.000 0.00 0.00 0.00 4.02
2678 3152 0.671251 TTTTCACCGGCAACCATGTC 59.329 50.000 0.00 0.00 0.00 3.06
2679 3153 0.387565 GTTTTCACCGGCAACCATGT 59.612 50.000 0.00 0.00 0.00 3.21
2680 3154 0.319469 GGTTTTCACCGGCAACCATG 60.319 55.000 16.71 1.35 39.93 3.66
2681 3155 2.046108 GGTTTTCACCGGCAACCAT 58.954 52.632 16.71 0.00 39.93 3.55
2682 3156 3.527641 GGTTTTCACCGGCAACCA 58.472 55.556 16.71 0.00 39.93 3.67
2690 3164 1.281656 CAACGGCTCGGTTTTCACC 59.718 57.895 0.00 0.00 40.16 4.02
2691 3165 1.281656 CCAACGGCTCGGTTTTCAC 59.718 57.895 0.00 0.00 0.00 3.18
2692 3166 2.548295 GCCAACGGCTCGGTTTTCA 61.548 57.895 0.00 0.00 46.69 2.69
2693 3167 2.254350 GCCAACGGCTCGGTTTTC 59.746 61.111 0.00 0.00 46.69 2.29
2712 3186 4.884257 TAGAACGCCGCCATCGCC 62.884 66.667 0.00 0.00 0.00 5.54
2713 3187 3.627218 GTAGAACGCCGCCATCGC 61.627 66.667 0.00 0.00 0.00 4.58
2714 3188 3.320078 CGTAGAACGCCGCCATCG 61.320 66.667 0.00 0.00 33.65 3.84
2723 3197 0.986992 CAAGGTAACGGCGTAGAACG 59.013 55.000 15.20 0.00 44.08 3.95
2724 3198 2.070262 ACAAGGTAACGGCGTAGAAC 57.930 50.000 15.20 12.25 46.39 3.01
2725 3199 2.406130 CAACAAGGTAACGGCGTAGAA 58.594 47.619 15.20 0.00 46.39 2.10
2726 3200 1.337074 CCAACAAGGTAACGGCGTAGA 60.337 52.381 15.20 0.57 46.39 2.59
2727 3201 1.073177 CCAACAAGGTAACGGCGTAG 58.927 55.000 15.20 1.84 46.39 3.51
2728 3202 0.678395 TCCAACAAGGTAACGGCGTA 59.322 50.000 15.20 0.00 46.39 4.42
2729 3203 0.601841 CTCCAACAAGGTAACGGCGT 60.602 55.000 6.77 6.77 46.39 5.68
2730 3204 1.296056 CCTCCAACAAGGTAACGGCG 61.296 60.000 4.80 4.80 46.39 6.46
2731 3205 1.583495 GCCTCCAACAAGGTAACGGC 61.583 60.000 0.00 0.00 46.39 5.68
2732 3206 0.250553 TGCCTCCAACAAGGTAACGG 60.251 55.000 0.00 0.00 46.39 4.44
2733 3207 1.737793 GATGCCTCCAACAAGGTAACG 59.262 52.381 0.00 0.00 46.39 3.18
2734 3208 1.737793 CGATGCCTCCAACAAGGTAAC 59.262 52.381 0.00 0.00 38.79 2.50
2735 3209 1.349688 ACGATGCCTCCAACAAGGTAA 59.650 47.619 0.00 0.00 38.79 2.85
2736 3210 0.981183 ACGATGCCTCCAACAAGGTA 59.019 50.000 0.00 0.00 38.79 3.08
2737 3211 0.321653 GACGATGCCTCCAACAAGGT 60.322 55.000 0.00 0.00 38.79 3.50
2738 3212 0.321564 TGACGATGCCTCCAACAAGG 60.322 55.000 0.00 0.00 39.62 3.61
2739 3213 1.742761 ATGACGATGCCTCCAACAAG 58.257 50.000 0.00 0.00 0.00 3.16
2740 3214 3.558931 ATATGACGATGCCTCCAACAA 57.441 42.857 0.00 0.00 0.00 2.83
2741 3215 4.100963 AGTTATATGACGATGCCTCCAACA 59.899 41.667 0.00 0.00 0.00 3.33
2742 3216 4.632153 AGTTATATGACGATGCCTCCAAC 58.368 43.478 0.00 0.00 0.00 3.77
2743 3217 4.955811 AGTTATATGACGATGCCTCCAA 57.044 40.909 0.00 0.00 0.00 3.53
2744 3218 5.048013 CAGTAGTTATATGACGATGCCTCCA 60.048 44.000 0.00 0.00 0.00 3.86
2745 3219 5.047943 ACAGTAGTTATATGACGATGCCTCC 60.048 44.000 0.00 0.00 0.00 4.30
2746 3220 6.015027 ACAGTAGTTATATGACGATGCCTC 57.985 41.667 0.00 0.00 0.00 4.70
2747 3221 5.334957 CGACAGTAGTTATATGACGATGCCT 60.335 44.000 0.00 0.00 34.79 4.75
2748 3222 4.852104 CGACAGTAGTTATATGACGATGCC 59.148 45.833 0.00 0.00 34.79 4.40
2749 3223 5.564504 GTCGACAGTAGTTATATGACGATGC 59.435 44.000 11.55 0.00 41.53 3.91
2750 3224 6.078479 GGTCGACAGTAGTTATATGACGATG 58.922 44.000 18.91 0.00 41.53 3.84
2751 3225 5.180868 GGGTCGACAGTAGTTATATGACGAT 59.819 44.000 18.91 0.00 41.53 3.73
2752 3226 4.512944 GGGTCGACAGTAGTTATATGACGA 59.487 45.833 18.91 0.00 38.43 4.20
2753 3227 4.274214 TGGGTCGACAGTAGTTATATGACG 59.726 45.833 18.91 0.00 34.30 4.35
2754 3228 5.298777 AGTGGGTCGACAGTAGTTATATGAC 59.701 44.000 18.91 0.00 0.00 3.06
2755 3229 5.443283 AGTGGGTCGACAGTAGTTATATGA 58.557 41.667 18.91 0.00 0.00 2.15
2756 3230 5.759963 GAGTGGGTCGACAGTAGTTATATG 58.240 45.833 18.91 0.00 0.00 1.78
2771 3245 2.262915 CCAGAGCACGAGTGGGTC 59.737 66.667 5.32 1.85 0.00 4.46
2772 3246 3.314331 CCCAGAGCACGAGTGGGT 61.314 66.667 5.32 0.00 45.33 4.51
2774 3248 4.087892 CCCCCAGAGCACGAGTGG 62.088 72.222 5.32 0.00 0.00 4.00
2775 3249 2.111999 TTTCCCCCAGAGCACGAGTG 62.112 60.000 0.00 0.00 0.00 3.51
2776 3250 1.841556 TTTCCCCCAGAGCACGAGT 60.842 57.895 0.00 0.00 0.00 4.18
2777 3251 1.376037 GTTTCCCCCAGAGCACGAG 60.376 63.158 0.00 0.00 0.00 4.18
2778 3252 2.747686 GTTTCCCCCAGAGCACGA 59.252 61.111 0.00 0.00 0.00 4.35
2779 3253 2.359975 GGTTTCCCCCAGAGCACG 60.360 66.667 0.00 0.00 0.00 5.34
2789 3263 1.490910 CACCAGATCCTAGGGTTTCCC 59.509 57.143 9.46 0.00 45.90 3.97
2790 3264 2.197465 ACACCAGATCCTAGGGTTTCC 58.803 52.381 9.46 0.00 31.03 3.13
2791 3265 3.370633 GGAACACCAGATCCTAGGGTTTC 60.371 52.174 9.46 0.84 34.10 2.78
2792 3266 2.576648 GGAACACCAGATCCTAGGGTTT 59.423 50.000 9.46 0.00 34.10 3.27
2793 3267 2.197465 GGAACACCAGATCCTAGGGTT 58.803 52.381 9.46 2.78 34.10 4.11
2794 3268 1.080498 TGGAACACCAGATCCTAGGGT 59.920 52.381 9.46 0.00 37.58 4.34
2795 3269 1.879575 TGGAACACCAGATCCTAGGG 58.120 55.000 9.46 0.00 37.58 3.53
2812 3286 2.355126 CGCCATCGTCCGATCTGG 60.355 66.667 0.00 2.18 40.09 3.86
2813 3287 2.355126 CCGCCATCGTCCGATCTG 60.355 66.667 0.00 0.00 31.62 2.90
2814 3288 4.286320 GCCGCCATCGTCCGATCT 62.286 66.667 0.00 0.00 31.62 2.75
2815 3289 4.585526 TGCCGCCATCGTCCGATC 62.586 66.667 0.00 0.00 31.62 3.69
2816 3290 4.891727 GTGCCGCCATCGTCCGAT 62.892 66.667 0.00 0.00 34.81 4.18
2832 3306 0.318784 GAGAGAAACGACACCGCAGT 60.319 55.000 0.00 0.00 39.95 4.40
2833 3307 0.039074 AGAGAGAAACGACACCGCAG 60.039 55.000 0.00 0.00 39.95 5.18
2834 3308 0.387929 AAGAGAGAAACGACACCGCA 59.612 50.000 0.00 0.00 39.95 5.69
2835 3309 0.784778 CAAGAGAGAAACGACACCGC 59.215 55.000 0.00 0.00 39.95 5.68
2836 3310 1.000607 TCCAAGAGAGAAACGACACCG 60.001 52.381 0.00 0.00 42.50 4.94
2837 3311 2.814280 TCCAAGAGAGAAACGACACC 57.186 50.000 0.00 0.00 0.00 4.16
2838 3312 2.476997 GCTTCCAAGAGAGAAACGACAC 59.523 50.000 0.00 0.00 0.00 3.67
2839 3313 2.102420 TGCTTCCAAGAGAGAAACGACA 59.898 45.455 0.00 0.00 0.00 4.35
2840 3314 2.755650 TGCTTCCAAGAGAGAAACGAC 58.244 47.619 0.00 0.00 0.00 4.34
2841 3315 3.589988 GATGCTTCCAAGAGAGAAACGA 58.410 45.455 0.00 0.00 0.00 3.85
2842 3316 2.346847 CGATGCTTCCAAGAGAGAAACG 59.653 50.000 0.00 0.00 0.00 3.60
2843 3317 3.330267 ACGATGCTTCCAAGAGAGAAAC 58.670 45.455 0.00 0.00 0.00 2.78
2844 3318 3.685139 ACGATGCTTCCAAGAGAGAAA 57.315 42.857 0.00 0.00 0.00 2.52
2845 3319 3.685139 AACGATGCTTCCAAGAGAGAA 57.315 42.857 0.00 0.00 0.00 2.87
2846 3320 3.329386 CAAACGATGCTTCCAAGAGAGA 58.671 45.455 0.00 0.00 0.00 3.10
2847 3321 3.736530 CAAACGATGCTTCCAAGAGAG 57.263 47.619 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.