Multiple sequence alignment - TraesCS4A01G414900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G414900 chr4A 100.000 3113 0 0 1 3113 684976075 684979187 0.000000e+00 5749.0
1 TraesCS4A01G414900 chr4A 81.605 299 33 9 800 1094 602862955 602863235 8.680000e-56 228.0
2 TraesCS4A01G414900 chr4A 98.864 88 1 0 35 122 9380761 9380674 1.160000e-34 158.0
3 TraesCS4A01G414900 chr4A 88.889 117 11 2 1001 1116 604105207 604105092 3.240000e-30 143.0
4 TraesCS4A01G414900 chr4A 100.000 40 0 0 541 580 684976575 684976614 1.200000e-09 75.0
5 TraesCS4A01G414900 chr4A 100.000 40 0 0 501 540 684976615 684976654 1.200000e-09 75.0
6 TraesCS4A01G414900 chr2D 89.478 2604 206 16 530 3082 589504114 589501528 0.000000e+00 3229.0
7 TraesCS4A01G414900 chr2D 90.559 2415 199 15 599 3001 589504032 589501635 0.000000e+00 3169.0
8 TraesCS4A01G414900 chr2D 91.906 383 20 6 121 502 589504580 589504208 2.750000e-145 525.0
9 TraesCS4A01G414900 chr2D 77.737 822 136 31 1240 2037 13724028 13723230 7.870000e-126 460.0
10 TraesCS4A01G414900 chr2A 91.458 1955 149 12 684 2627 723828868 723826921 0.000000e+00 2669.0
11 TraesCS4A01G414900 chr2A 89.460 389 25 9 120 502 723829458 723829080 7.810000e-131 477.0
12 TraesCS4A01G414900 chr2A 93.427 213 8 3 2906 3113 723826921 723826710 8.380000e-81 311.0
13 TraesCS4A01G414900 chr2A 87.500 120 7 6 531 642 723828986 723828867 7.000000e-27 132.0
14 TraesCS4A01G414900 chr2A 97.222 36 0 1 501 535 723828976 723828941 3.350000e-05 60.2
15 TraesCS4A01G414900 chr2B 90.078 1925 160 14 659 2560 713695499 713693583 0.000000e+00 2468.0
16 TraesCS4A01G414900 chr2B 89.267 382 22 11 118 495 713696373 713696007 7.870000e-126 460.0
17 TraesCS4A01G414900 chr2B 95.122 205 7 2 2906 3107 713693552 713693348 1.390000e-83 320.0
18 TraesCS4A01G414900 chr2B 89.474 114 10 2 33 145 650285739 650285627 3.240000e-30 143.0
19 TraesCS4A01G414900 chr2B 98.276 58 1 0 530 587 713695748 713695691 5.490000e-18 102.0
20 TraesCS4A01G414900 chr3D 77.838 1101 175 44 1001 2083 529496504 529495455 4.410000e-173 617.0
21 TraesCS4A01G414900 chr3D 97.778 90 2 0 35 124 22679146 22679057 4.160000e-34 156.0
22 TraesCS4A01G414900 chr3D 97.778 90 2 0 35 124 22767812 22767901 4.160000e-34 156.0
23 TraesCS4A01G414900 chr3A 77.445 1135 182 51 1001 2115 663441806 663440726 7.380000e-171 610.0
24 TraesCS4A01G414900 chr3A 75.044 1130 215 41 1001 2115 663451945 663450868 2.190000e-126 462.0
25 TraesCS4A01G414900 chr3B 77.091 1100 185 44 1001 2083 700073329 700072280 9.680000e-160 573.0
26 TraesCS4A01G414900 chr7D 78.427 890 146 28 1240 2115 624769338 624770195 3.530000e-149 538.0
27 TraesCS4A01G414900 chr5D 85.271 516 68 6 1201 1714 438519754 438519245 2.750000e-145 525.0
28 TraesCS4A01G414900 chr5D 75.782 991 152 50 992 1959 560224876 560225801 1.340000e-113 420.0
29 TraesCS4A01G414900 chr5D 84.916 358 45 8 1904 2255 438519245 438518891 1.370000e-93 353.0
30 TraesCS4A01G414900 chr5D 79.478 268 31 12 652 917 438555027 438554782 5.340000e-38 169.0
31 TraesCS4A01G414900 chr5D 97.826 92 2 0 34 125 446918258 446918167 3.210000e-35 159.0
32 TraesCS4A01G414900 chr7A 76.734 894 177 21 1233 2115 51662296 51661423 1.310000e-128 470.0
33 TraesCS4A01G414900 chr6B 94.898 98 5 0 25 122 474189299 474189202 1.500000e-33 154.0
34 TraesCS4A01G414900 chr1B 95.789 95 4 0 30 124 666824407 666824313 1.500000e-33 154.0
35 TraesCS4A01G414900 chr4D 96.703 91 3 0 33 123 423945402 423945312 5.380000e-33 152.0
36 TraesCS4A01G414900 chr7B 89.344 122 8 4 34 150 529956296 529956417 6.960000e-32 148.0
37 TraesCS4A01G414900 chr5B 88.000 125 15 0 992 1116 710608500 710608624 6.960000e-32 148.0
38 TraesCS4A01G414900 chrUn 83.439 157 24 2 2565 2720 47774474 47774319 9.000000e-31 145.0
39 TraesCS4A01G414900 chr4B 84.762 105 16 0 1012 1116 668873289 668873393 4.250000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G414900 chr4A 684976075 684979187 3112 False 1966.333333 5749 100.000000 1 3113 3 chr4A.!!$F2 3112
1 TraesCS4A01G414900 chr2D 589501528 589504580 3052 True 2307.666667 3229 90.647667 121 3082 3 chr2D.!!$R2 2961
2 TraesCS4A01G414900 chr2D 13723230 13724028 798 True 460.000000 460 77.737000 1240 2037 1 chr2D.!!$R1 797
3 TraesCS4A01G414900 chr2A 723826710 723829458 2748 True 729.840000 2669 91.813400 120 3113 5 chr2A.!!$R1 2993
4 TraesCS4A01G414900 chr2B 713693348 713696373 3025 True 837.500000 2468 93.185750 118 3107 4 chr2B.!!$R2 2989
5 TraesCS4A01G414900 chr3D 529495455 529496504 1049 True 617.000000 617 77.838000 1001 2083 1 chr3D.!!$R2 1082
6 TraesCS4A01G414900 chr3A 663440726 663441806 1080 True 610.000000 610 77.445000 1001 2115 1 chr3A.!!$R1 1114
7 TraesCS4A01G414900 chr3A 663450868 663451945 1077 True 462.000000 462 75.044000 1001 2115 1 chr3A.!!$R2 1114
8 TraesCS4A01G414900 chr3B 700072280 700073329 1049 True 573.000000 573 77.091000 1001 2083 1 chr3B.!!$R1 1082
9 TraesCS4A01G414900 chr7D 624769338 624770195 857 False 538.000000 538 78.427000 1240 2115 1 chr7D.!!$F1 875
10 TraesCS4A01G414900 chr5D 438518891 438519754 863 True 439.000000 525 85.093500 1201 2255 2 chr5D.!!$R3 1054
11 TraesCS4A01G414900 chr5D 560224876 560225801 925 False 420.000000 420 75.782000 992 1959 1 chr5D.!!$F1 967
12 TraesCS4A01G414900 chr7A 51661423 51662296 873 True 470.000000 470 76.734000 1233 2115 1 chr7A.!!$R1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1397 0.473326 AGGAGCAGCAATCCTCATCC 59.527 55.0 0.0 0.0 44.05 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2801 0.035915 GGGGAAGCTGAACTGAGACC 60.036 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.703001 GTCTTCTGAATCAAGACCCCA 57.297 47.619 4.21 0.00 42.73 4.96
23 24 3.339141 GTCTTCTGAATCAAGACCCCAC 58.661 50.000 4.21 0.00 42.73 4.61
24 25 2.978978 TCTTCTGAATCAAGACCCCACA 59.021 45.455 0.00 0.00 0.00 4.17
25 26 3.008375 TCTTCTGAATCAAGACCCCACAG 59.992 47.826 0.00 0.00 0.00 3.66
26 27 2.619931 TCTGAATCAAGACCCCACAGA 58.380 47.619 0.00 0.00 0.00 3.41
27 28 2.568956 TCTGAATCAAGACCCCACAGAG 59.431 50.000 0.00 0.00 0.00 3.35
28 29 2.304180 CTGAATCAAGACCCCACAGAGT 59.696 50.000 0.00 0.00 0.00 3.24
29 30 2.711009 TGAATCAAGACCCCACAGAGTT 59.289 45.455 0.00 0.00 0.00 3.01
30 31 3.244561 TGAATCAAGACCCCACAGAGTTC 60.245 47.826 0.00 0.00 0.00 3.01
31 32 2.103153 TCAAGACCCCACAGAGTTCT 57.897 50.000 0.00 0.00 0.00 3.01
32 33 1.971357 TCAAGACCCCACAGAGTTCTC 59.029 52.381 0.00 0.00 0.00 2.87
33 34 1.694150 CAAGACCCCACAGAGTTCTCA 59.306 52.381 2.64 0.00 0.00 3.27
34 35 2.103153 AGACCCCACAGAGTTCTCAA 57.897 50.000 2.64 0.00 0.00 3.02
35 36 1.974236 AGACCCCACAGAGTTCTCAAG 59.026 52.381 2.64 0.00 0.00 3.02
36 37 1.694696 GACCCCACAGAGTTCTCAAGT 59.305 52.381 2.64 0.00 0.00 3.16
37 38 2.897969 GACCCCACAGAGTTCTCAAGTA 59.102 50.000 2.64 0.00 0.00 2.24
38 39 2.633481 ACCCCACAGAGTTCTCAAGTAC 59.367 50.000 2.64 0.00 0.00 2.73
39 40 2.900546 CCCCACAGAGTTCTCAAGTACT 59.099 50.000 2.64 0.00 0.00 2.73
40 41 3.056465 CCCCACAGAGTTCTCAAGTACTC 60.056 52.174 8.31 8.31 41.10 2.59
41 42 3.056465 CCCACAGAGTTCTCAAGTACTCC 60.056 52.174 11.73 0.00 41.53 3.85
42 43 3.056465 CCACAGAGTTCTCAAGTACTCCC 60.056 52.174 11.73 0.00 41.53 4.30
43 44 3.829601 CACAGAGTTCTCAAGTACTCCCT 59.170 47.826 11.73 0.00 41.53 4.20
44 45 4.082463 CACAGAGTTCTCAAGTACTCCCTC 60.082 50.000 11.73 0.00 41.53 4.30
45 46 4.202631 ACAGAGTTCTCAAGTACTCCCTCT 60.203 45.833 11.73 0.00 41.53 3.69
46 47 4.157656 CAGAGTTCTCAAGTACTCCCTCTG 59.842 50.000 11.73 7.31 41.53 3.35
47 48 4.083565 GAGTTCTCAAGTACTCCCTCTGT 58.916 47.826 0.00 0.00 36.74 3.41
48 49 5.014333 AGAGTTCTCAAGTACTCCCTCTGTA 59.986 44.000 11.73 0.00 41.53 2.74
49 50 5.642165 AGTTCTCAAGTACTCCCTCTGTAA 58.358 41.667 0.00 0.00 0.00 2.41
50 51 6.075984 AGTTCTCAAGTACTCCCTCTGTAAA 58.924 40.000 0.00 0.00 0.00 2.01
51 52 6.209788 AGTTCTCAAGTACTCCCTCTGTAAAG 59.790 42.308 0.00 0.00 0.00 1.85
52 53 5.888901 TCTCAAGTACTCCCTCTGTAAAGA 58.111 41.667 0.00 0.00 0.00 2.52
53 54 6.312529 TCTCAAGTACTCCCTCTGTAAAGAA 58.687 40.000 0.00 0.00 0.00 2.52
54 55 6.781014 TCTCAAGTACTCCCTCTGTAAAGAAA 59.219 38.462 0.00 0.00 0.00 2.52
55 56 7.455008 TCTCAAGTACTCCCTCTGTAAAGAAAT 59.545 37.037 0.00 0.00 0.00 2.17
56 57 8.660295 TCAAGTACTCCCTCTGTAAAGAAATA 57.340 34.615 0.00 0.00 0.00 1.40
57 58 9.268282 TCAAGTACTCCCTCTGTAAAGAAATAT 57.732 33.333 0.00 0.00 0.00 1.28
63 64 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
64 65 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
65 66 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
66 67 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
82 83 7.856145 AAGAGCATTTAGATCACCAAAGTAG 57.144 36.000 0.00 0.00 34.30 2.57
83 84 6.951971 AGAGCATTTAGATCACCAAAGTAGT 58.048 36.000 0.00 0.00 34.30 2.73
84 85 6.820656 AGAGCATTTAGATCACCAAAGTAGTG 59.179 38.462 0.00 0.00 34.30 2.74
94 95 4.927425 TCACCAAAGTAGTGATCTAAACGC 59.073 41.667 0.00 0.00 39.29 4.84
95 96 4.929808 CACCAAAGTAGTGATCTAAACGCT 59.070 41.667 0.00 0.00 37.42 5.07
96 97 5.062308 CACCAAAGTAGTGATCTAAACGCTC 59.938 44.000 0.00 0.00 37.42 5.03
97 98 5.047235 ACCAAAGTAGTGATCTAAACGCTCT 60.047 40.000 0.00 0.00 0.00 4.09
98 99 5.869888 CCAAAGTAGTGATCTAAACGCTCTT 59.130 40.000 0.00 0.00 0.00 2.85
99 100 7.033791 CCAAAGTAGTGATCTAAACGCTCTTA 58.966 38.462 0.00 0.00 0.00 2.10
100 101 7.707035 CCAAAGTAGTGATCTAAACGCTCTTAT 59.293 37.037 0.00 0.00 0.00 1.73
101 102 9.731819 CAAAGTAGTGATCTAAACGCTCTTATA 57.268 33.333 0.00 0.00 0.00 0.98
107 108 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
112 113 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
113 114 7.599630 AAACGCTCTTATATTTGTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
114 115 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
115 116 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
116 117 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
125 126 2.030007 TGTTTACGGAGGGAGTACAACG 60.030 50.000 0.00 0.00 0.00 4.10
141 142 4.506886 ACAACGAACAAACAACAAGGAA 57.493 36.364 0.00 0.00 0.00 3.36
175 176 6.381133 TCTGGCAGAATGTCTATCAAGTAAGA 59.619 38.462 16.28 0.00 44.57 2.10
186 187 8.208224 TGTCTATCAAGTAAGACAAACTGGAAA 58.792 33.333 2.82 0.00 46.82 3.13
187 188 9.220767 GTCTATCAAGTAAGACAAACTGGAAAT 57.779 33.333 0.00 0.00 41.46 2.17
188 189 9.793259 TCTATCAAGTAAGACAAACTGGAAATT 57.207 29.630 0.00 0.00 30.77 1.82
217 218 9.777297 AGTATTTTACAAACATTGCCATTTCTT 57.223 25.926 0.00 0.00 0.00 2.52
319 324 9.930158 AAAGGAGGCAAAATAATATGGTTAGTA 57.070 29.630 0.00 0.00 0.00 1.82
422 429 5.880054 AATGAGTAAATGACCAAACCGAG 57.120 39.130 0.00 0.00 0.00 4.63
479 488 9.334693 GACTTAAGTTACTCATCTTTTGCAATG 57.665 33.333 10.02 0.00 0.00 2.82
498 507 6.376299 TGCAATGCTCATTCATACTTCTTCTT 59.624 34.615 6.82 0.00 0.00 2.52
502 511 9.842775 AATGCTCATTCATACTTCTTCTTATCA 57.157 29.630 0.00 0.00 0.00 2.15
504 513 9.269453 TGCTCATTCATACTTCTTCTTATCATG 57.731 33.333 0.00 0.00 0.00 3.07
505 514 9.270640 GCTCATTCATACTTCTTCTTATCATGT 57.729 33.333 0.00 0.00 0.00 3.21
507 516 9.049523 TCATTCATACTTCTTCTTATCATGTGC 57.950 33.333 0.00 0.00 0.00 4.57
509 518 8.429493 TTCATACTTCTTCTTATCATGTGCTG 57.571 34.615 0.00 0.00 0.00 4.41
510 519 6.988580 TCATACTTCTTCTTATCATGTGCTGG 59.011 38.462 0.00 0.00 0.00 4.85
514 523 7.341805 ACTTCTTCTTATCATGTGCTGGTAAT 58.658 34.615 0.00 0.00 30.09 1.89
515 524 8.486210 ACTTCTTCTTATCATGTGCTGGTAATA 58.514 33.333 0.00 0.00 30.09 0.98
516 525 9.499479 CTTCTTCTTATCATGTGCTGGTAATAT 57.501 33.333 0.00 0.00 30.09 1.28
519 528 9.276590 CTTCTTATCATGTGCTGGTAATATCAA 57.723 33.333 0.00 0.00 30.09 2.57
520 529 9.625747 TTCTTATCATGTGCTGGTAATATCAAA 57.374 29.630 0.00 0.00 30.09 2.69
521 530 9.056005 TCTTATCATGTGCTGGTAATATCAAAC 57.944 33.333 0.00 0.00 30.09 2.93
523 532 6.682423 TCATGTGCTGGTAATATCAAACTG 57.318 37.500 0.00 0.00 0.00 3.16
524 533 6.179756 TCATGTGCTGGTAATATCAAACTGT 58.820 36.000 0.00 0.00 0.00 3.55
526 535 7.826744 TCATGTGCTGGTAATATCAAACTGTTA 59.173 33.333 0.00 0.00 0.00 2.41
597 1006 5.360144 GTCCTAGACTCCTAATACAGCACAA 59.640 44.000 0.00 0.00 0.00 3.33
642 1051 4.130857 TCTCCAGTAGAGTCAATCTAGCG 58.869 47.826 0.00 0.00 41.28 4.26
678 1087 4.421948 ACACTATAAAAGTCCGCTCTTCG 58.578 43.478 0.00 0.00 35.76 3.79
694 1103 2.504175 TCTTCGTAAGGCCTTGGCTATT 59.496 45.455 28.77 1.45 37.50 1.73
695 1104 3.707611 TCTTCGTAAGGCCTTGGCTATTA 59.292 43.478 28.77 2.48 37.50 0.98
730 1139 5.401531 TTGGCTAACTCGAACTAGTGAAT 57.598 39.130 0.00 0.00 0.00 2.57
755 1172 1.734465 CATTCGAGCCTGGTCTTTGAC 59.266 52.381 0.00 0.00 0.00 3.18
762 1179 1.897560 CCTGGTCTTTGACAGGGAAC 58.102 55.000 2.83 0.00 33.68 3.62
871 1290 3.969287 AGTCTCTTGCATAGCAGTTGA 57.031 42.857 0.00 0.00 40.61 3.18
888 1307 6.609212 AGCAGTTGAGAAGAGATAGGTAATGA 59.391 38.462 0.00 0.00 0.00 2.57
892 1311 8.912988 AGTTGAGAAGAGATAGGTAATGAAGAG 58.087 37.037 0.00 0.00 0.00 2.85
978 1397 0.473326 AGGAGCAGCAATCCTCATCC 59.527 55.000 0.00 0.00 44.05 3.51
990 1409 2.739943 TCCTCATCCAGTGGAGTAGTG 58.260 52.381 18.69 11.00 35.06 2.74
1032 1457 2.125106 GATCGCCTTCGTGCCCTT 60.125 61.111 0.00 0.00 36.96 3.95
1096 1521 4.386951 CGGGCGTCACCACCATCA 62.387 66.667 0.00 0.00 42.05 3.07
1158 1589 2.089980 GCAGATCATGAGCACCACTTT 58.910 47.619 14.38 0.00 0.00 2.66
1262 1696 2.293318 TGAAGGTGGCTGCGGAGAT 61.293 57.895 8.65 0.00 0.00 2.75
1326 1760 1.746470 CCATGTCAGAGATGCTTGCA 58.254 50.000 1.78 0.00 0.00 4.08
1357 1791 2.154798 CTTTCACGAGGAGCCGGTGA 62.155 60.000 1.90 10.90 0.00 4.02
1503 1937 0.812811 CGACACCGTCCGAGGAGATA 60.813 60.000 0.00 0.00 34.73 1.98
1524 1958 4.155733 CCCGCGTGCAGGACCATA 62.156 66.667 11.29 0.00 0.00 2.74
1531 1965 4.175337 GCAGGACCATAGCGCCCA 62.175 66.667 2.29 0.00 0.00 5.36
1543 1977 1.078426 GCGCCCAAGTACATGAGGT 60.078 57.895 0.00 0.00 0.00 3.85
1585 2022 1.081175 CTGCTCGAGCTGTTGTCGA 60.081 57.895 35.27 13.87 43.97 4.20
1695 2138 2.111043 CACCTGACGTTGGGCACT 59.889 61.111 12.19 0.00 0.00 4.40
1722 2165 3.003173 TCCGACCCCTGCTTCCTG 61.003 66.667 0.00 0.00 0.00 3.86
1785 2228 2.015587 GTCGACGGACTACAGGAAGAT 58.984 52.381 0.00 0.00 40.15 2.40
1796 2254 6.127196 GGACTACAGGAAGATGACAAGAAGAT 60.127 42.308 0.00 0.00 0.00 2.40
1809 2267 2.853731 AGAAGATGTCGGATGTCGTC 57.146 50.000 0.00 2.11 40.32 4.20
1882 2340 1.005748 CTGCAGCTCGTCTCCAACA 60.006 57.895 0.00 0.00 0.00 3.33
1927 2385 0.250858 CATGGTGGCCAAGAGTGTCA 60.251 55.000 7.24 0.00 36.95 3.58
1940 2398 3.303135 TGTCAGGCCTCGCGTCTT 61.303 61.111 0.00 0.00 0.00 3.01
2084 2548 1.531365 CCAAGGGCCTTGACAGCAA 60.531 57.895 40.88 0.00 43.42 3.91
2123 2587 0.755686 AGGCTCTGAATCCATCCGAC 59.244 55.000 0.00 0.00 0.00 4.79
2165 2632 2.168313 TCGCTCAGCACTCCAATCATAA 59.832 45.455 0.00 0.00 0.00 1.90
2170 2637 4.201657 TCAGCACTCCAATCATAACCATG 58.798 43.478 0.00 0.00 0.00 3.66
2319 2789 2.624838 ACACAAATGAAACAGGGAGCAG 59.375 45.455 0.00 0.00 0.00 4.24
2393 2868 0.323451 ACCCTCCCCGCTTTCATTTC 60.323 55.000 0.00 0.00 0.00 2.17
2430 2907 5.132502 CAGGCCAAATTATATGTCACCAGA 58.867 41.667 5.01 0.00 0.00 3.86
2431 2908 5.240183 CAGGCCAAATTATATGTCACCAGAG 59.760 44.000 5.01 0.00 0.00 3.35
2432 2909 5.132648 AGGCCAAATTATATGTCACCAGAGA 59.867 40.000 5.01 0.00 0.00 3.10
2438 2915 3.766068 ATATGTCACCAGAGAGCATGG 57.234 47.619 0.00 0.00 43.87 3.66
2473 2954 1.187567 AACCTGAAACATGGCTGGCC 61.188 55.000 4.43 4.43 0.00 5.36
2499 2980 4.151121 TGGTCTTTCCATGAATTGCAGAA 58.849 39.130 0.00 0.00 41.93 3.02
2503 2984 8.675883 GGTCTTTCCATGAATTGCAGAAAGCA 62.676 42.308 14.32 0.00 41.92 3.91
2528 3009 5.357878 TCAAATTAAGACTAGCCATGGCAAG 59.642 40.000 37.18 17.97 44.88 4.01
2538 3019 6.702329 ACTAGCCATGGCAAGATTATAGTAC 58.298 40.000 37.18 3.71 44.88 2.73
2616 3099 1.009829 CAAGGGCGCATCTACTTGAC 58.990 55.000 10.83 0.00 42.07 3.18
2627 3110 4.673441 CATCTACTTGACTGGTAAGGTCG 58.327 47.826 0.00 0.00 36.58 4.79
2642 3125 5.357032 GGTAAGGTCGGATGAACAATGAAAT 59.643 40.000 0.00 0.00 32.76 2.17
2644 3127 3.129287 AGGTCGGATGAACAATGAAATGC 59.871 43.478 0.00 0.00 32.76 3.56
2645 3128 3.438360 GTCGGATGAACAATGAAATGCC 58.562 45.455 0.00 0.00 0.00 4.40
2646 3129 3.087781 TCGGATGAACAATGAAATGCCA 58.912 40.909 0.00 0.00 0.00 4.92
2647 3130 3.700539 TCGGATGAACAATGAAATGCCAT 59.299 39.130 0.00 0.00 0.00 4.40
2680 3163 1.544724 TCCTTTTTGGCCCTTGATCG 58.455 50.000 0.00 0.00 35.26 3.69
2704 3187 9.008965 TCGACTAAAATTCAAATTTCATGAGGA 57.991 29.630 0.00 0.00 37.62 3.71
2724 3207 7.819644 TGAGGACAAGATAAACAAACATCATG 58.180 34.615 0.00 0.00 0.00 3.07
2725 3208 7.665145 TGAGGACAAGATAAACAAACATCATGA 59.335 33.333 0.00 0.00 0.00 3.07
2737 3220 7.288810 ACAAACATCATGAACATGGTAAACT 57.711 32.000 13.67 0.00 39.24 2.66
2738 3221 7.147312 ACAAACATCATGAACATGGTAAACTG 58.853 34.615 13.67 7.98 39.24 3.16
2806 3289 0.461961 CTTAGCTGAAGGGGGACTCG 59.538 60.000 0.00 0.00 0.00 4.18
2807 3290 1.614241 TTAGCTGAAGGGGGACTCGC 61.614 60.000 0.00 0.00 0.00 5.03
2820 3303 3.556423 GGGGACTCGCTACTTTCTTTCAA 60.556 47.826 0.00 0.00 0.00 2.69
2881 3366 1.070134 GGTGTCTGTCTACAACTGCCA 59.930 52.381 0.00 0.00 34.11 4.92
2891 3376 2.652941 ACAACTGCCAAACACAACAG 57.347 45.000 0.00 0.00 36.22 3.16
2945 3432 6.036470 GGGAAAATAGCAGCATAAAGAACAC 58.964 40.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.244561 TGTGGGGTCTTGATTCAGAAGAC 60.245 47.826 9.19 9.19 45.83 3.01
3 4 2.978978 TGTGGGGTCTTGATTCAGAAGA 59.021 45.455 0.00 0.00 0.00 2.87
5 6 2.978978 TCTGTGGGGTCTTGATTCAGAA 59.021 45.455 0.00 0.00 0.00 3.02
6 7 2.568956 CTCTGTGGGGTCTTGATTCAGA 59.431 50.000 0.00 0.00 0.00 3.27
7 8 2.304180 ACTCTGTGGGGTCTTGATTCAG 59.696 50.000 0.00 0.00 0.00 3.02
8 9 2.338809 ACTCTGTGGGGTCTTGATTCA 58.661 47.619 0.00 0.00 0.00 2.57
9 10 3.008485 AGAACTCTGTGGGGTCTTGATTC 59.992 47.826 0.00 0.00 0.00 2.52
10 11 2.982488 AGAACTCTGTGGGGTCTTGATT 59.018 45.455 0.00 0.00 0.00 2.57
11 12 2.569404 GAGAACTCTGTGGGGTCTTGAT 59.431 50.000 0.00 0.00 0.00 2.57
12 13 1.971357 GAGAACTCTGTGGGGTCTTGA 59.029 52.381 0.00 0.00 0.00 3.02
13 14 1.694150 TGAGAACTCTGTGGGGTCTTG 59.306 52.381 3.51 0.00 0.00 3.02
14 15 2.103153 TGAGAACTCTGTGGGGTCTT 57.897 50.000 3.51 0.00 0.00 3.01
15 16 1.974236 CTTGAGAACTCTGTGGGGTCT 59.026 52.381 3.51 0.00 0.00 3.85
16 17 1.694696 ACTTGAGAACTCTGTGGGGTC 59.305 52.381 3.51 0.00 0.00 4.46
17 18 1.807814 ACTTGAGAACTCTGTGGGGT 58.192 50.000 3.51 0.00 0.00 4.95
18 19 2.900546 AGTACTTGAGAACTCTGTGGGG 59.099 50.000 3.51 0.00 0.00 4.96
19 20 3.056465 GGAGTACTTGAGAACTCTGTGGG 60.056 52.174 0.00 0.00 41.53 4.61
20 21 3.056465 GGGAGTACTTGAGAACTCTGTGG 60.056 52.174 0.00 0.00 41.53 4.17
21 22 3.829601 AGGGAGTACTTGAGAACTCTGTG 59.170 47.826 0.00 0.00 41.53 3.66
22 23 4.083565 GAGGGAGTACTTGAGAACTCTGT 58.916 47.826 0.00 5.20 41.53 3.41
23 24 4.157656 CAGAGGGAGTACTTGAGAACTCTG 59.842 50.000 17.09 17.09 42.95 3.35
24 25 4.202631 ACAGAGGGAGTACTTGAGAACTCT 60.203 45.833 0.00 1.89 41.53 3.24
25 26 4.083565 ACAGAGGGAGTACTTGAGAACTC 58.916 47.826 0.00 0.00 41.16 3.01
26 27 4.120946 ACAGAGGGAGTACTTGAGAACT 57.879 45.455 0.00 0.00 0.00 3.01
27 28 5.979288 TTACAGAGGGAGTACTTGAGAAC 57.021 43.478 0.00 0.00 0.00 3.01
28 29 6.312529 TCTTTACAGAGGGAGTACTTGAGAA 58.687 40.000 0.00 0.00 0.00 2.87
29 30 5.888901 TCTTTACAGAGGGAGTACTTGAGA 58.111 41.667 0.00 0.00 0.00 3.27
30 31 6.591750 TTCTTTACAGAGGGAGTACTTGAG 57.408 41.667 0.00 0.00 0.00 3.02
31 32 6.989155 TTTCTTTACAGAGGGAGTACTTGA 57.011 37.500 0.00 0.00 0.00 3.02
37 38 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
38 39 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
39 40 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
40 41 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
56 57 9.553064 CTACTTTGGTGATCTAAATGCTCTTAT 57.447 33.333 0.00 0.00 0.00 1.73
57 58 8.540388 ACTACTTTGGTGATCTAAATGCTCTTA 58.460 33.333 0.00 0.00 0.00 2.10
58 59 7.335422 CACTACTTTGGTGATCTAAATGCTCTT 59.665 37.037 0.00 0.00 36.89 2.85
59 60 6.820656 CACTACTTTGGTGATCTAAATGCTCT 59.179 38.462 0.00 0.00 36.89 4.09
60 61 6.818644 TCACTACTTTGGTGATCTAAATGCTC 59.181 38.462 0.00 0.00 38.57 4.26
61 62 6.711277 TCACTACTTTGGTGATCTAAATGCT 58.289 36.000 0.00 0.00 38.57 3.79
62 63 6.985188 TCACTACTTTGGTGATCTAAATGC 57.015 37.500 0.00 0.00 38.57 3.56
71 72 4.927425 GCGTTTAGATCACTACTTTGGTGA 59.073 41.667 0.00 0.00 45.84 4.02
72 73 4.929808 AGCGTTTAGATCACTACTTTGGTG 59.070 41.667 0.00 0.00 36.17 4.17
73 74 5.047235 AGAGCGTTTAGATCACTACTTTGGT 60.047 40.000 0.00 0.00 37.82 3.67
74 75 5.411781 AGAGCGTTTAGATCACTACTTTGG 58.588 41.667 0.00 0.00 37.82 3.28
75 76 6.952935 AAGAGCGTTTAGATCACTACTTTG 57.047 37.500 0.00 0.00 37.82 2.77
81 82 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
86 87 8.810427 CCGTAAACAAATATAAGAGCGTTTAGA 58.190 33.333 0.00 0.00 31.53 2.10
87 88 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
88 89 8.700722 TCCGTAAACAAATATAAGAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
89 90 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
90 91 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
91 92 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
92 93 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
93 94 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
94 95 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
95 96 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
96 97 8.199449 TGTACTCCCTCCGTAAACAAATATAAG 58.801 37.037 0.00 0.00 0.00 1.73
97 98 8.076910 TGTACTCCCTCCGTAAACAAATATAA 57.923 34.615 0.00 0.00 0.00 0.98
98 99 7.658525 TGTACTCCCTCCGTAAACAAATATA 57.341 36.000 0.00 0.00 0.00 0.86
99 100 6.549433 TGTACTCCCTCCGTAAACAAATAT 57.451 37.500 0.00 0.00 0.00 1.28
100 101 5.999205 TGTACTCCCTCCGTAAACAAATA 57.001 39.130 0.00 0.00 0.00 1.40
101 102 4.895668 TGTACTCCCTCCGTAAACAAAT 57.104 40.909 0.00 0.00 0.00 2.32
102 103 4.379652 GTTGTACTCCCTCCGTAAACAAA 58.620 43.478 0.00 0.00 0.00 2.83
103 104 3.552684 CGTTGTACTCCCTCCGTAAACAA 60.553 47.826 0.00 0.00 0.00 2.83
104 105 2.030007 CGTTGTACTCCCTCCGTAAACA 60.030 50.000 0.00 0.00 0.00 2.83
105 106 2.228822 TCGTTGTACTCCCTCCGTAAAC 59.771 50.000 0.00 0.00 0.00 2.01
106 107 2.513753 TCGTTGTACTCCCTCCGTAAA 58.486 47.619 0.00 0.00 0.00 2.01
107 108 2.198827 TCGTTGTACTCCCTCCGTAA 57.801 50.000 0.00 0.00 0.00 3.18
108 109 1.812571 GTTCGTTGTACTCCCTCCGTA 59.187 52.381 0.00 0.00 0.00 4.02
109 110 0.600057 GTTCGTTGTACTCCCTCCGT 59.400 55.000 0.00 0.00 0.00 4.69
110 111 0.599558 TGTTCGTTGTACTCCCTCCG 59.400 55.000 0.00 0.00 0.00 4.63
111 112 2.804527 GTTTGTTCGTTGTACTCCCTCC 59.195 50.000 0.00 0.00 0.00 4.30
112 113 3.460103 TGTTTGTTCGTTGTACTCCCTC 58.540 45.455 0.00 0.00 0.00 4.30
113 114 3.547054 TGTTTGTTCGTTGTACTCCCT 57.453 42.857 0.00 0.00 0.00 4.20
114 115 3.374678 TGTTGTTTGTTCGTTGTACTCCC 59.625 43.478 0.00 0.00 0.00 4.30
115 116 4.603231 TGTTGTTTGTTCGTTGTACTCC 57.397 40.909 0.00 0.00 0.00 3.85
116 117 5.025826 CCTTGTTGTTTGTTCGTTGTACTC 58.974 41.667 0.00 0.00 0.00 2.59
125 126 7.425606 AGTATGTGATTCCTTGTTGTTTGTTC 58.574 34.615 0.00 0.00 0.00 3.18
141 142 4.408270 AGACATTCTGCCAGAGTATGTGAT 59.592 41.667 15.03 3.28 41.41 3.06
191 192 9.777297 AAGAAATGGCAATGTTTGTAAAATACT 57.223 25.926 0.00 0.00 0.00 2.12
217 218 7.857456 TCTCACAGGGCTTGTTATTTTAGATA 58.143 34.615 0.00 0.00 38.16 1.98
479 488 9.270640 ACATGATAAGAAGAAGTATGAATGAGC 57.729 33.333 0.00 0.00 0.00 4.26
498 507 7.992608 ACAGTTTGATATTACCAGCACATGATA 59.007 33.333 0.00 0.00 0.00 2.15
502 511 8.574251 TTAACAGTTTGATATTACCAGCACAT 57.426 30.769 0.00 0.00 0.00 3.21
504 513 8.673711 TGATTAACAGTTTGATATTACCAGCAC 58.326 33.333 0.00 0.00 0.00 4.40
505 514 8.800370 TGATTAACAGTTTGATATTACCAGCA 57.200 30.769 0.00 0.00 0.00 4.41
515 524 9.167311 GACTAGGACAATGATTAACAGTTTGAT 57.833 33.333 0.00 0.00 0.00 2.57
516 525 8.154203 TGACTAGGACAATGATTAACAGTTTGA 58.846 33.333 0.00 0.00 0.00 2.69
519 528 8.103305 ACATGACTAGGACAATGATTAACAGTT 58.897 33.333 0.00 0.00 0.00 3.16
520 529 7.550551 CACATGACTAGGACAATGATTAACAGT 59.449 37.037 0.00 0.00 0.00 3.55
521 530 7.466455 GCACATGACTAGGACAATGATTAACAG 60.466 40.741 0.00 0.00 0.00 3.16
523 532 6.540189 AGCACATGACTAGGACAATGATTAAC 59.460 38.462 0.00 0.00 0.00 2.01
524 533 6.539826 CAGCACATGACTAGGACAATGATTAA 59.460 38.462 0.00 0.00 0.00 1.40
526 535 4.880120 CAGCACATGACTAGGACAATGATT 59.120 41.667 0.00 0.00 0.00 2.57
597 1006 2.492484 CTCCTTTCAGTAGTACTGCCGT 59.508 50.000 23.14 0.00 45.54 5.68
620 1029 4.130857 CGCTAGATTGACTCTACTGGAGA 58.869 47.826 0.00 0.00 44.45 3.71
642 1051 7.876582 ACTTTTATAGTGTTCTGTAAGGGTGTC 59.123 37.037 0.00 0.00 35.19 3.67
678 1087 8.103935 AGAAGAATATAATAGCCAAGGCCTTAC 58.896 37.037 20.00 13.78 43.17 2.34
695 1104 9.832445 TTCGAGTTAGCCAAATAAGAAGAATAT 57.168 29.630 0.00 0.00 0.00 1.28
755 1172 5.917462 AGAAAAAGAAAACATGGTTCCCTG 58.083 37.500 0.00 0.00 0.00 4.45
762 1179 7.532682 TTCCGAAAAGAAAAAGAAAACATGG 57.467 32.000 0.00 0.00 0.00 3.66
851 1270 3.513119 TCTCAACTGCTATGCAAGAGACT 59.487 43.478 11.97 0.00 38.41 3.24
971 1390 1.137872 GCACTACTCCACTGGATGAGG 59.862 57.143 0.00 0.00 32.80 3.86
978 1397 3.814842 TCAATTGTTGCACTACTCCACTG 59.185 43.478 5.13 0.00 0.00 3.66
990 1409 0.179129 CGGAGGCCATCAATTGTTGC 60.179 55.000 5.01 8.97 0.00 4.17
1032 1457 0.759959 TGGTGTTGTCGAAGGCCTTA 59.240 50.000 20.54 0.00 0.00 2.69
1096 1521 1.208165 GGGTGGTGGAAGATGGAGGT 61.208 60.000 0.00 0.00 0.00 3.85
1174 1605 4.827087 CATGGCAGCCGCGAGACT 62.827 66.667 8.23 0.00 39.92 3.24
1254 1688 3.329542 GAAGCCCACCATCTCCGCA 62.330 63.158 0.00 0.00 0.00 5.69
1262 1696 1.774217 ACCTGGAAGAAGCCCACCA 60.774 57.895 0.00 0.00 34.07 4.17
1326 1760 4.947147 TGAAAGCCCCGCAACGCT 62.947 61.111 0.00 0.00 36.74 5.07
1483 1917 2.532465 ATCTCCTCGGACGGTGTCGA 62.532 60.000 0.00 0.00 40.11 4.20
1488 1922 1.525535 CGGTATCTCCTCGGACGGT 60.526 63.158 0.00 0.00 0.00 4.83
1492 1926 2.203451 GGGCGGTATCTCCTCGGA 60.203 66.667 0.00 0.00 0.00 4.55
1524 1958 1.221840 CCTCATGTACTTGGGCGCT 59.778 57.895 7.64 0.00 0.00 5.92
1531 1965 2.783135 CTGCACCAACCTCATGTACTT 58.217 47.619 0.00 0.00 0.00 2.24
1648 2091 1.794714 CAGGATGGGTAGTAGTGGCT 58.205 55.000 0.00 0.00 0.00 4.75
1722 2165 2.283676 TCCTGGAGGACCACGGTC 60.284 66.667 7.75 7.75 41.77 4.79
1753 2196 2.649034 GTCGACGAGCACCTGGAA 59.351 61.111 0.00 0.00 0.00 3.53
1785 2228 3.673323 CGACATCCGACATCTTCTTGTCA 60.673 47.826 5.54 0.00 45.08 3.58
1796 2254 1.605451 ACCCAGACGACATCCGACA 60.605 57.895 0.00 0.00 41.76 4.35
1833 2291 3.872603 TTCACCACCAGCACGCCT 61.873 61.111 0.00 0.00 0.00 5.52
1838 2296 2.279851 CGACGTTCACCACCAGCA 60.280 61.111 0.00 0.00 0.00 4.41
1882 2340 1.302033 CCACGCTCCTGAACTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
1909 2367 0.037303 CTGACACTCTTGGCCACCAT 59.963 55.000 3.88 0.00 31.53 3.55
1927 2385 4.421479 CACGAAGACGCGAGGCCT 62.421 66.667 15.93 3.86 43.69 5.19
1940 2398 2.347490 GGAAGAAGCAGGCCACGA 59.653 61.111 5.01 0.00 0.00 4.35
2155 2619 4.436113 TGCTAGCATGGTTATGATTGGA 57.564 40.909 14.93 0.00 36.36 3.53
2165 2632 2.133281 TCTTGCATTGCTAGCATGGT 57.867 45.000 20.13 5.04 42.33 3.55
2170 2637 3.119388 TCCAAACATCTTGCATTGCTAGC 60.119 43.478 14.22 8.10 31.96 3.42
2331 2801 0.035915 GGGGAAGCTGAACTGAGACC 60.036 60.000 0.00 0.00 0.00 3.85
2380 2855 3.708195 CTGCTGAAATGAAAGCGGG 57.292 52.632 0.00 0.00 42.54 6.13
2393 2868 1.098050 GGCCTGTAATGAACCTGCTG 58.902 55.000 0.00 0.00 0.00 4.41
2499 2980 6.040166 CCATGGCTAGTCTTAATTTGATGCTT 59.960 38.462 0.00 0.00 0.00 3.91
2503 2984 5.448654 TGCCATGGCTAGTCTTAATTTGAT 58.551 37.500 35.53 0.00 42.51 2.57
2528 3009 7.011389 TGCAGTTTCTGTGCATGTACTATAATC 59.989 37.037 15.25 6.11 45.96 1.75
2561 3044 9.996554 TCAGAATACAGAAAATGTACTCAAGAA 57.003 29.630 0.00 0.00 47.00 2.52
2563 3046 9.429359 AGTCAGAATACAGAAAATGTACTCAAG 57.571 33.333 0.00 0.00 47.00 3.02
2616 3099 3.328382 TTGTTCATCCGACCTTACCAG 57.672 47.619 0.00 0.00 0.00 4.00
2627 3110 5.013568 TCATGGCATTTCATTGTTCATCC 57.986 39.130 0.00 0.00 0.00 3.51
2642 3125 4.795469 AGGATACAAATGTCATCATGGCA 58.205 39.130 0.00 0.00 35.66 4.92
2644 3127 7.493320 CCAAAAAGGATACAAATGTCATCATGG 59.507 37.037 0.00 0.00 41.22 3.66
2645 3128 7.010738 GCCAAAAAGGATACAAATGTCATCATG 59.989 37.037 0.00 0.00 41.22 3.07
2646 3129 7.043565 GCCAAAAAGGATACAAATGTCATCAT 58.956 34.615 0.00 0.00 41.22 2.45
2647 3130 6.397272 GCCAAAAAGGATACAAATGTCATCA 58.603 36.000 0.00 0.00 41.22 3.07
2680 3163 9.912634 TGTCCTCATGAAATTTGAATTTTAGTC 57.087 29.630 0.00 0.00 38.64 2.59
2704 3187 9.414295 CATGTTCATGATGTTTGTTTATCTTGT 57.586 29.630 6.94 0.00 33.01 3.16
2857 3342 3.927142 GCAGTTGTAGACAGACACCATAC 59.073 47.826 0.00 0.00 0.00 2.39
2862 3347 2.526304 TGGCAGTTGTAGACAGACAC 57.474 50.000 0.00 0.00 26.10 3.67
2873 3358 2.652941 ACTGTTGTGTTTGGCAGTTG 57.347 45.000 0.00 0.00 38.86 3.16
2881 3366 5.163794 GCCGTATATGCTTACTGTTGTGTTT 60.164 40.000 0.00 0.00 0.00 2.83
2891 3376 4.569162 TGTCAAACAGCCGTATATGCTTAC 59.431 41.667 0.00 0.00 36.81 2.34
2916 3401 3.659183 ATGCTGCTATTTTCCCAGAGT 57.341 42.857 0.00 0.00 0.00 3.24
2945 3432 6.527722 GTGTTTTAGTATGTCATGGCATTGTG 59.472 38.462 19.60 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.