Multiple sequence alignment - TraesCS4A01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G414400 chr4A 100.000 3063 0 0 1 3063 684901343 684898281 0.000000e+00 5657.0
1 TraesCS4A01G414400 chr4A 94.203 759 29 6 2314 3063 440199930 440200682 0.000000e+00 1144.0
2 TraesCS4A01G414400 chr4D 85.341 1760 117 67 478 2155 478232257 478230557 0.000000e+00 1690.0
3 TraesCS4A01G414400 chr4D 92.510 761 29 9 2314 3063 64226178 64225435 0.000000e+00 1064.0
4 TraesCS4A01G414400 chr4D 92.116 761 27 10 2314 3063 173582091 173582829 0.000000e+00 1042.0
5 TraesCS4A01G414400 chr4D 91.316 760 33 12 2314 3063 381437638 381436902 0.000000e+00 1007.0
6 TraesCS4A01G414400 chr4D 89.910 446 45 0 1616 2061 489742328 489742773 2.650000e-160 575.0
7 TraesCS4A01G414400 chr4D 90.301 299 26 2 1224 1522 489741047 489741342 3.700000e-104 388.0
8 TraesCS4A01G414400 chr4D 96.296 54 2 0 1 54 478232936 478232883 4.210000e-14 89.8
9 TraesCS4A01G414400 chr4D 97.368 38 1 0 1086 1123 261757904 261757941 7.090000e-07 65.8
10 TraesCS4A01G414400 chr4D 95.122 41 2 0 1086 1126 474591323 474591283 7.090000e-07 65.8
11 TraesCS4A01G414400 chr4D 97.059 34 1 0 1093 1126 497132037 497132004 1.190000e-04 58.4
12 TraesCS4A01G414400 chr6D 94.203 759 25 8 2314 3063 55668790 55668042 0.000000e+00 1140.0
13 TraesCS4A01G414400 chr6D 91.853 761 33 10 2314 3063 340953278 340954020 0.000000e+00 1035.0
14 TraesCS4A01G414400 chr6D 95.556 45 2 0 1079 1123 21917154 21917198 4.240000e-09 73.1
15 TraesCS4A01G414400 chr6D 97.368 38 1 0 1086 1123 372822377 372822414 7.090000e-07 65.8
16 TraesCS4A01G414400 chr6D 95.122 41 2 0 1086 1126 473109101 473109061 7.090000e-07 65.8
17 TraesCS4A01G414400 chr6D 92.683 41 3 0 1086 1126 401298625 401298585 3.300000e-05 60.2
18 TraesCS4A01G414400 chr2D 93.939 759 29 7 2314 3063 325744637 325743887 0.000000e+00 1131.0
19 TraesCS4A01G414400 chr2D 92.257 762 28 11 2314 3063 592372966 592372224 0.000000e+00 1051.0
20 TraesCS4A01G414400 chr2D 91.304 759 36 5 2314 3063 78342213 78341476 0.000000e+00 1009.0
21 TraesCS4A01G414400 chr2D 97.436 39 1 0 1085 1123 154110674 154110712 1.970000e-07 67.6
22 TraesCS4A01G414400 chr5A 93.149 759 31 9 2314 3063 92448322 92449068 0.000000e+00 1094.0
23 TraesCS4A01G414400 chr5A 89.298 299 29 2 1224 1522 671191068 671191363 3.730000e-99 372.0
24 TraesCS4A01G414400 chr1D 93.149 759 29 8 2314 3063 234861776 234862520 0.000000e+00 1092.0
25 TraesCS4A01G414400 chr1D 90.646 759 44 8 2314 3063 49631128 49631868 0.000000e+00 983.0
26 TraesCS4A01G414400 chr1D 95.238 42 2 0 1085 1126 169367539 169367498 1.970000e-07 67.6
27 TraesCS4A01G414400 chr1D 90.000 50 5 0 1077 1126 45399311 45399262 7.090000e-07 65.8
28 TraesCS4A01G414400 chr1D 95.122 41 2 0 1086 1126 46112244 46112204 7.090000e-07 65.8
29 TraesCS4A01G414400 chr3D 92.773 761 25 8 2314 3063 94712815 94712074 0.000000e+00 1074.0
30 TraesCS4A01G414400 chr3D 90.333 600 31 8 2314 2903 614122187 614122769 0.000000e+00 761.0
31 TraesCS4A01G414400 chr7D 92.378 761 30 9 2314 3063 369901832 369901089 0.000000e+00 1059.0
32 TraesCS4A01G414400 chr7D 91.017 757 35 10 2314 3060 60233407 60232674 0.000000e+00 990.0
33 TraesCS4A01G414400 chr7D 86.852 540 61 9 1616 2150 539764434 539764968 2.030000e-166 595.0
34 TraesCS4A01G414400 chr7D 87.714 350 28 11 1180 1520 539761099 539761442 7.960000e-106 394.0
35 TraesCS4A01G414400 chr7D 95.238 42 2 0 1085 1126 468941647 468941606 1.970000e-07 67.6
36 TraesCS4A01G414400 chr7D 97.436 39 1 0 1085 1123 577826133 577826171 1.970000e-07 67.6
37 TraesCS4A01G414400 chr7D 95.238 42 2 0 1085 1126 586892612 586892571 1.970000e-07 67.6
38 TraesCS4A01G414400 chr1A 92.267 763 30 9 2314 3063 76806922 76806176 0.000000e+00 1055.0
39 TraesCS4A01G414400 chr5D 92.116 761 32 9 2314 3063 532712812 532712069 0.000000e+00 1048.0
40 TraesCS4A01G414400 chr5D 91.579 760 29 6 2314 3063 228521857 228521123 0.000000e+00 1016.0
41 TraesCS4A01G414400 chr4B 91.261 595 37 4 1616 2197 604532731 604532139 0.000000e+00 797.0
42 TraesCS4A01G414400 chr4B 89.262 447 48 0 1615 2061 628661271 628661717 7.420000e-156 560.0
43 TraesCS4A01G414400 chr4B 86.476 525 38 19 998 1522 604533363 604532872 2.080000e-151 545.0
44 TraesCS4A01G414400 chr4B 89.632 299 28 2 1224 1522 628660198 628660493 8.020000e-101 377.0
45 TraesCS4A01G414400 chr4B 88.652 141 11 5 659 794 604539097 604538957 1.890000e-37 167.0
46 TraesCS4A01G414400 chr4B 83.069 189 11 5 792 970 604533627 604533450 5.290000e-33 152.0
47 TraesCS4A01G414400 chr4B 90.826 109 9 1 581 689 604539207 604539100 8.850000e-31 145.0
48 TraesCS4A01G414400 chr4B 95.238 42 2 0 1082 1123 187359120 187359161 1.970000e-07 67.6
49 TraesCS4A01G414400 chr4B 89.796 49 5 0 1078 1126 566573984 566573936 2.550000e-06 63.9
50 TraesCS4A01G414400 chr7A 87.148 568 57 15 1616 2174 620934775 620935335 5.570000e-177 630.0
51 TraesCS4A01G414400 chr7A 89.441 322 31 2 1199 1520 620932401 620932719 1.320000e-108 403.0
52 TraesCS4A01G414400 chr7B 87.199 539 60 8 1616 2150 582655213 582655746 3.380000e-169 604.0
53 TraesCS4A01G414400 chr7B 88.509 322 34 2 1199 1520 582653150 582653468 1.330000e-103 387.0
54 TraesCS4A01G414400 chr7B 95.455 44 2 0 1083 1126 1816336 1816293 1.520000e-08 71.3
55 TraesCS4A01G414400 chr2A 91.083 314 15 3 2318 2623 422515262 422515570 2.200000e-111 412.0
56 TraesCS4A01G414400 chr1B 93.210 162 11 0 26 187 313450465 313450304 3.950000e-59 239.0
57 TraesCS4A01G414400 chr1B 95.349 43 2 0 1084 1126 457004101 457004059 5.480000e-08 69.4
58 TraesCS4A01G414400 chr1B 95.238 42 2 0 1085 1126 395249022 395248981 1.970000e-07 67.6
59 TraesCS4A01G414400 chr2B 93.878 49 3 0 1078 1126 545250762 545250714 1.180000e-09 75.0
60 TraesCS4A01G414400 chr2B 97.561 41 1 0 1083 1123 256148463 256148503 1.520000e-08 71.3
61 TraesCS4A01G414400 chr6B 97.619 42 1 0 1082 1123 226866952 226866993 4.240000e-09 73.1
62 TraesCS4A01G414400 chr6B 92.000 50 4 0 1077 1126 41377026 41376977 1.520000e-08 71.3
63 TraesCS4A01G414400 chr6B 95.238 42 2 0 1082 1123 143439800 143439841 1.970000e-07 67.6
64 TraesCS4A01G414400 chr6B 95.122 41 2 0 1086 1126 35376197 35376157 7.090000e-07 65.8
65 TraesCS4A01G414400 chr3B 97.561 41 1 0 1083 1123 50046413 50046453 1.520000e-08 71.3
66 TraesCS4A01G414400 chr5B 95.349 43 2 0 1081 1123 640282563 640282605 5.480000e-08 69.4
67 TraesCS4A01G414400 chr6A 95.238 42 2 0 1085 1126 422165689 422165648 1.970000e-07 67.6
68 TraesCS4A01G414400 chrUn 95.122 41 2 0 1086 1126 15981933 15981893 7.090000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G414400 chr4A 684898281 684901343 3062 True 5657.0 5657 100.000000 1 3063 1 chr4A.!!$R1 3062
1 TraesCS4A01G414400 chr4A 440199930 440200682 752 False 1144.0 1144 94.203000 2314 3063 1 chr4A.!!$F1 749
2 TraesCS4A01G414400 chr4D 64225435 64226178 743 True 1064.0 1064 92.510000 2314 3063 1 chr4D.!!$R1 749
3 TraesCS4A01G414400 chr4D 173582091 173582829 738 False 1042.0 1042 92.116000 2314 3063 1 chr4D.!!$F1 749
4 TraesCS4A01G414400 chr4D 381436902 381437638 736 True 1007.0 1007 91.316000 2314 3063 1 chr4D.!!$R2 749
5 TraesCS4A01G414400 chr4D 478230557 478232936 2379 True 889.9 1690 90.818500 1 2155 2 chr4D.!!$R5 2154
6 TraesCS4A01G414400 chr4D 489741047 489742773 1726 False 481.5 575 90.105500 1224 2061 2 chr4D.!!$F3 837
7 TraesCS4A01G414400 chr6D 55668042 55668790 748 True 1140.0 1140 94.203000 2314 3063 1 chr6D.!!$R1 749
8 TraesCS4A01G414400 chr6D 340953278 340954020 742 False 1035.0 1035 91.853000 2314 3063 1 chr6D.!!$F2 749
9 TraesCS4A01G414400 chr2D 325743887 325744637 750 True 1131.0 1131 93.939000 2314 3063 1 chr2D.!!$R2 749
10 TraesCS4A01G414400 chr2D 592372224 592372966 742 True 1051.0 1051 92.257000 2314 3063 1 chr2D.!!$R3 749
11 TraesCS4A01G414400 chr2D 78341476 78342213 737 True 1009.0 1009 91.304000 2314 3063 1 chr2D.!!$R1 749
12 TraesCS4A01G414400 chr5A 92448322 92449068 746 False 1094.0 1094 93.149000 2314 3063 1 chr5A.!!$F1 749
13 TraesCS4A01G414400 chr1D 234861776 234862520 744 False 1092.0 1092 93.149000 2314 3063 1 chr1D.!!$F2 749
14 TraesCS4A01G414400 chr1D 49631128 49631868 740 False 983.0 983 90.646000 2314 3063 1 chr1D.!!$F1 749
15 TraesCS4A01G414400 chr3D 94712074 94712815 741 True 1074.0 1074 92.773000 2314 3063 1 chr3D.!!$R1 749
16 TraesCS4A01G414400 chr3D 614122187 614122769 582 False 761.0 761 90.333000 2314 2903 1 chr3D.!!$F1 589
17 TraesCS4A01G414400 chr7D 369901089 369901832 743 True 1059.0 1059 92.378000 2314 3063 1 chr7D.!!$R2 749
18 TraesCS4A01G414400 chr7D 60232674 60233407 733 True 990.0 990 91.017000 2314 3060 1 chr7D.!!$R1 746
19 TraesCS4A01G414400 chr7D 539761099 539764968 3869 False 494.5 595 87.283000 1180 2150 2 chr7D.!!$F2 970
20 TraesCS4A01G414400 chr1A 76806176 76806922 746 True 1055.0 1055 92.267000 2314 3063 1 chr1A.!!$R1 749
21 TraesCS4A01G414400 chr5D 532712069 532712812 743 True 1048.0 1048 92.116000 2314 3063 1 chr5D.!!$R2 749
22 TraesCS4A01G414400 chr5D 228521123 228521857 734 True 1016.0 1016 91.579000 2314 3063 1 chr5D.!!$R1 749
23 TraesCS4A01G414400 chr4B 604532139 604533627 1488 True 498.0 797 86.935333 792 2197 3 chr4B.!!$R2 1405
24 TraesCS4A01G414400 chr4B 628660198 628661717 1519 False 468.5 560 89.447000 1224 2061 2 chr4B.!!$F2 837
25 TraesCS4A01G414400 chr7A 620932401 620935335 2934 False 516.5 630 88.294500 1199 2174 2 chr7A.!!$F1 975
26 TraesCS4A01G414400 chr7B 582653150 582655746 2596 False 495.5 604 87.854000 1199 2150 2 chr7B.!!$F1 951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1244 0.035458 AGACACGGAAGGCCTCTTTG 59.965 55.0 5.23 3.66 32.52 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 6815 0.250553 ACCACCCAATACACCACACG 60.251 55.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.820467 TCGAAATTGATGCACCATATCCC 59.180 43.478 0.00 0.00 0.00 3.85
43 44 3.668141 TTGATGCACCATATCCCACTT 57.332 42.857 0.00 0.00 0.00 3.16
45 46 2.509131 TGATGCACCATATCCCACTTCA 59.491 45.455 0.00 0.00 0.00 3.02
46 47 3.138839 TGATGCACCATATCCCACTTCAT 59.861 43.478 0.00 0.00 0.00 2.57
47 48 4.350520 TGATGCACCATATCCCACTTCATA 59.649 41.667 0.00 0.00 0.00 2.15
48 49 4.085357 TGCACCATATCCCACTTCATAC 57.915 45.455 0.00 0.00 0.00 2.39
49 50 3.716353 TGCACCATATCCCACTTCATACT 59.284 43.478 0.00 0.00 0.00 2.12
50 51 4.067896 GCACCATATCCCACTTCATACTG 58.932 47.826 0.00 0.00 0.00 2.74
51 52 4.202357 GCACCATATCCCACTTCATACTGA 60.202 45.833 0.00 0.00 0.00 3.41
52 53 5.300752 CACCATATCCCACTTCATACTGAC 58.699 45.833 0.00 0.00 0.00 3.51
53 54 4.968719 ACCATATCCCACTTCATACTGACA 59.031 41.667 0.00 0.00 0.00 3.58
54 55 5.608437 ACCATATCCCACTTCATACTGACAT 59.392 40.000 0.00 0.00 0.00 3.06
55 56 6.169094 CCATATCCCACTTCATACTGACATC 58.831 44.000 0.00 0.00 0.00 3.06
56 57 6.239686 CCATATCCCACTTCATACTGACATCA 60.240 42.308 0.00 0.00 0.00 3.07
79 80 6.054860 AGTAATGCTGACCATCTAGTTTGT 57.945 37.500 0.00 0.00 31.43 2.83
80 81 7.182817 AGTAATGCTGACCATCTAGTTTGTA 57.817 36.000 0.00 0.00 31.43 2.41
81 82 7.620880 AGTAATGCTGACCATCTAGTTTGTAA 58.379 34.615 0.00 0.00 31.43 2.41
82 83 6.992063 AATGCTGACCATCTAGTTTGTAAG 57.008 37.500 0.00 0.00 31.43 2.34
83 84 4.832248 TGCTGACCATCTAGTTTGTAAGG 58.168 43.478 0.00 0.00 0.00 2.69
84 85 4.286032 TGCTGACCATCTAGTTTGTAAGGT 59.714 41.667 0.00 0.00 0.00 3.50
85 86 5.221843 TGCTGACCATCTAGTTTGTAAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
86 87 5.122396 GCTGACCATCTAGTTTGTAAGGTTG 59.878 44.000 0.00 0.00 0.00 3.77
87 88 6.428083 TGACCATCTAGTTTGTAAGGTTGA 57.572 37.500 0.00 0.00 0.00 3.18
88 89 6.464222 TGACCATCTAGTTTGTAAGGTTGAG 58.536 40.000 0.00 0.00 0.00 3.02
89 90 5.805728 ACCATCTAGTTTGTAAGGTTGAGG 58.194 41.667 0.00 0.00 0.00 3.86
90 91 5.546499 ACCATCTAGTTTGTAAGGTTGAGGA 59.454 40.000 0.00 0.00 0.00 3.71
91 92 6.215636 ACCATCTAGTTTGTAAGGTTGAGGAT 59.784 38.462 0.00 0.00 0.00 3.24
92 93 7.402071 ACCATCTAGTTTGTAAGGTTGAGGATA 59.598 37.037 0.00 0.00 0.00 2.59
93 94 8.265055 CCATCTAGTTTGTAAGGTTGAGGATAA 58.735 37.037 0.00 0.00 0.00 1.75
94 95 9.838339 CATCTAGTTTGTAAGGTTGAGGATAAT 57.162 33.333 0.00 0.00 0.00 1.28
99 100 9.449719 AGTTTGTAAGGTTGAGGATAATACTTG 57.550 33.333 0.00 0.00 0.00 3.16
100 101 9.227777 GTTTGTAAGGTTGAGGATAATACTTGT 57.772 33.333 0.00 0.00 0.00 3.16
101 102 8.786826 TTGTAAGGTTGAGGATAATACTTGTG 57.213 34.615 0.00 0.00 0.00 3.33
102 103 8.141298 TGTAAGGTTGAGGATAATACTTGTGA 57.859 34.615 0.00 0.00 0.00 3.58
103 104 8.038944 TGTAAGGTTGAGGATAATACTTGTGAC 58.961 37.037 0.00 0.00 0.00 3.67
104 105 6.620877 AGGTTGAGGATAATACTTGTGACA 57.379 37.500 0.00 0.00 0.00 3.58
105 106 6.407202 AGGTTGAGGATAATACTTGTGACAC 58.593 40.000 0.00 0.00 0.00 3.67
106 107 5.291128 GGTTGAGGATAATACTTGTGACACG 59.709 44.000 0.22 0.00 0.00 4.49
107 108 4.430007 TGAGGATAATACTTGTGACACGC 58.570 43.478 0.22 0.00 0.00 5.34
108 109 4.159693 TGAGGATAATACTTGTGACACGCT 59.840 41.667 0.22 0.00 0.00 5.07
109 110 5.086104 AGGATAATACTTGTGACACGCTT 57.914 39.130 0.22 0.00 0.00 4.68
110 111 5.109903 AGGATAATACTTGTGACACGCTTC 58.890 41.667 0.22 0.00 0.00 3.86
111 112 5.105310 AGGATAATACTTGTGACACGCTTCT 60.105 40.000 0.22 0.00 0.00 2.85
112 113 5.005779 GGATAATACTTGTGACACGCTTCTG 59.994 44.000 0.22 0.00 0.00 3.02
113 114 3.660501 ATACTTGTGACACGCTTCTGA 57.339 42.857 0.22 0.00 0.00 3.27
114 115 1.571919 ACTTGTGACACGCTTCTGAC 58.428 50.000 0.22 0.00 0.00 3.51
115 116 1.134818 ACTTGTGACACGCTTCTGACA 60.135 47.619 0.22 0.00 0.00 3.58
116 117 1.524355 CTTGTGACACGCTTCTGACAG 59.476 52.381 0.22 0.00 0.00 3.51
117 118 0.249447 TGTGACACGCTTCTGACAGG 60.249 55.000 1.81 0.00 0.00 4.00
118 119 1.300931 TGACACGCTTCTGACAGGC 60.301 57.895 1.81 0.00 0.00 4.85
119 120 1.005630 GACACGCTTCTGACAGGCT 60.006 57.895 1.81 0.00 0.00 4.58
120 121 1.005630 ACACGCTTCTGACAGGCTC 60.006 57.895 1.81 0.00 0.00 4.70
121 122 1.005748 CACGCTTCTGACAGGCTCA 60.006 57.895 1.81 0.00 0.00 4.26
122 123 0.390866 CACGCTTCTGACAGGCTCAT 60.391 55.000 1.81 0.00 0.00 2.90
123 124 0.390866 ACGCTTCTGACAGGCTCATG 60.391 55.000 1.81 0.00 0.00 3.07
124 125 1.088340 CGCTTCTGACAGGCTCATGG 61.088 60.000 1.81 0.00 0.00 3.66
125 126 0.747283 GCTTCTGACAGGCTCATGGG 60.747 60.000 1.81 0.00 0.00 4.00
126 127 0.617413 CTTCTGACAGGCTCATGGGT 59.383 55.000 1.81 0.00 0.00 4.51
127 128 0.325933 TTCTGACAGGCTCATGGGTG 59.674 55.000 1.81 0.00 0.00 4.61
128 129 1.748122 CTGACAGGCTCATGGGTGC 60.748 63.158 0.00 0.00 0.00 5.01
129 130 2.821366 GACAGGCTCATGGGTGCG 60.821 66.667 0.00 0.00 34.40 5.34
130 131 3.612247 GACAGGCTCATGGGTGCGT 62.612 63.158 0.00 0.00 34.40 5.24
131 132 2.360350 CAGGCTCATGGGTGCGTT 60.360 61.111 0.00 0.00 34.40 4.84
132 133 2.360350 AGGCTCATGGGTGCGTTG 60.360 61.111 0.00 0.00 34.40 4.10
133 134 2.359850 GGCTCATGGGTGCGTTGA 60.360 61.111 0.00 0.00 34.40 3.18
134 135 2.690778 GGCTCATGGGTGCGTTGAC 61.691 63.158 0.00 0.00 34.40 3.18
135 136 1.672356 GCTCATGGGTGCGTTGACT 60.672 57.895 0.00 0.00 0.00 3.41
136 137 1.639298 GCTCATGGGTGCGTTGACTC 61.639 60.000 0.00 0.00 0.00 3.36
137 138 0.036952 CTCATGGGTGCGTTGACTCT 60.037 55.000 0.00 0.00 0.00 3.24
138 139 1.204704 CTCATGGGTGCGTTGACTCTA 59.795 52.381 0.00 0.00 0.00 2.43
139 140 1.204704 TCATGGGTGCGTTGACTCTAG 59.795 52.381 0.00 0.00 0.00 2.43
140 141 0.108138 ATGGGTGCGTTGACTCTAGC 60.108 55.000 0.00 0.00 0.00 3.42
141 142 1.448013 GGGTGCGTTGACTCTAGCC 60.448 63.158 0.00 0.00 0.00 3.93
142 143 1.592223 GGTGCGTTGACTCTAGCCT 59.408 57.895 0.00 0.00 0.00 4.58
143 144 0.737715 GGTGCGTTGACTCTAGCCTG 60.738 60.000 0.00 0.00 0.00 4.85
144 145 1.079819 TGCGTTGACTCTAGCCTGC 60.080 57.895 0.00 0.00 0.00 4.85
145 146 1.216710 GCGTTGACTCTAGCCTGCT 59.783 57.895 0.00 0.00 0.00 4.24
146 147 1.080995 GCGTTGACTCTAGCCTGCTG 61.081 60.000 0.97 0.00 0.00 4.41
147 148 0.244994 CGTTGACTCTAGCCTGCTGT 59.755 55.000 0.97 0.00 0.00 4.40
148 149 1.719600 GTTGACTCTAGCCTGCTGTG 58.280 55.000 0.97 0.00 0.00 3.66
149 150 1.001406 GTTGACTCTAGCCTGCTGTGT 59.999 52.381 0.97 0.00 0.00 3.72
150 151 2.215942 TGACTCTAGCCTGCTGTGTA 57.784 50.000 0.97 0.00 0.00 2.90
151 152 2.525368 TGACTCTAGCCTGCTGTGTAA 58.475 47.619 0.97 0.00 0.00 2.41
152 153 2.231478 TGACTCTAGCCTGCTGTGTAAC 59.769 50.000 0.97 0.00 37.35 2.50
153 154 1.202582 ACTCTAGCCTGCTGTGTAACG 59.797 52.381 0.97 0.00 42.39 3.18
154 155 1.472878 CTCTAGCCTGCTGTGTAACGA 59.527 52.381 0.97 0.00 42.39 3.85
155 156 2.099921 CTCTAGCCTGCTGTGTAACGAT 59.900 50.000 0.97 0.00 42.39 3.73
156 157 3.284617 TCTAGCCTGCTGTGTAACGATA 58.715 45.455 0.97 0.00 42.39 2.92
157 158 3.697542 TCTAGCCTGCTGTGTAACGATAA 59.302 43.478 0.97 0.00 42.39 1.75
158 159 2.618053 AGCCTGCTGTGTAACGATAAC 58.382 47.619 0.00 0.00 42.39 1.89
159 160 2.233922 AGCCTGCTGTGTAACGATAACT 59.766 45.455 0.00 0.00 42.39 2.24
160 161 2.348666 GCCTGCTGTGTAACGATAACTG 59.651 50.000 0.00 0.00 42.39 3.16
161 162 2.348666 CCTGCTGTGTAACGATAACTGC 59.651 50.000 0.00 0.11 42.39 4.40
162 163 2.993220 CTGCTGTGTAACGATAACTGCA 59.007 45.455 13.76 13.76 43.60 4.41
163 164 3.595173 TGCTGTGTAACGATAACTGCAT 58.405 40.909 11.90 0.00 41.80 3.96
164 165 3.370672 TGCTGTGTAACGATAACTGCATG 59.629 43.478 11.90 0.00 41.80 4.06
165 166 3.785505 GCTGTGTAACGATAACTGCATGC 60.786 47.826 11.82 11.82 42.39 4.06
166 167 2.347150 TGTGTAACGATAACTGCATGCG 59.653 45.455 14.09 10.50 42.39 4.73
167 168 1.326245 TGTAACGATAACTGCATGCGC 59.674 47.619 14.09 0.00 39.24 6.09
168 169 0.934496 TAACGATAACTGCATGCGCC 59.066 50.000 14.09 0.00 37.32 6.53
169 170 1.024046 AACGATAACTGCATGCGCCA 61.024 50.000 14.09 0.00 37.32 5.69
170 171 1.024046 ACGATAACTGCATGCGCCAA 61.024 50.000 14.09 0.00 37.32 4.52
171 172 0.098552 CGATAACTGCATGCGCCAAA 59.901 50.000 14.09 0.00 37.32 3.28
172 173 1.268692 CGATAACTGCATGCGCCAAAT 60.269 47.619 14.09 2.57 37.32 2.32
173 174 2.795681 CGATAACTGCATGCGCCAAATT 60.796 45.455 14.09 3.40 37.32 1.82
174 175 3.547813 CGATAACTGCATGCGCCAAATTA 60.548 43.478 14.09 5.51 37.32 1.40
175 176 2.282701 AACTGCATGCGCCAAATTAG 57.717 45.000 14.09 4.47 37.32 1.73
176 177 0.457035 ACTGCATGCGCCAAATTAGG 59.543 50.000 14.09 0.00 37.32 2.69
177 178 0.740149 CTGCATGCGCCAAATTAGGA 59.260 50.000 14.09 0.00 37.32 2.94
178 179 1.134753 CTGCATGCGCCAAATTAGGAA 59.865 47.619 14.09 0.00 37.32 3.36
179 180 1.135141 TGCATGCGCCAAATTAGGAAC 60.135 47.619 14.09 0.00 37.32 3.62
180 181 1.802508 GCATGCGCCAAATTAGGAACC 60.803 52.381 4.18 0.00 0.00 3.62
181 182 1.476085 CATGCGCCAAATTAGGAACCA 59.524 47.619 4.18 0.00 0.00 3.67
182 183 1.173043 TGCGCCAAATTAGGAACCAG 58.827 50.000 4.18 0.00 0.00 4.00
183 184 1.173913 GCGCCAAATTAGGAACCAGT 58.826 50.000 0.00 0.00 0.00 4.00
184 185 1.132453 GCGCCAAATTAGGAACCAGTC 59.868 52.381 0.00 0.00 0.00 3.51
192 193 4.724262 GGAACCAGTCCTCCAAGC 57.276 61.111 0.00 0.00 43.98 4.01
193 194 1.002011 GGAACCAGTCCTCCAAGCC 60.002 63.158 0.00 0.00 43.98 4.35
194 195 1.002011 GAACCAGTCCTCCAAGCCC 60.002 63.158 0.00 0.00 0.00 5.19
195 196 1.774217 AACCAGTCCTCCAAGCCCA 60.774 57.895 0.00 0.00 0.00 5.36
196 197 1.783250 AACCAGTCCTCCAAGCCCAG 61.783 60.000 0.00 0.00 0.00 4.45
197 198 1.920325 CCAGTCCTCCAAGCCCAGA 60.920 63.158 0.00 0.00 0.00 3.86
198 199 1.298014 CAGTCCTCCAAGCCCAGAC 59.702 63.158 0.00 0.00 0.00 3.51
199 200 1.920835 AGTCCTCCAAGCCCAGACC 60.921 63.158 0.00 0.00 0.00 3.85
200 201 2.206900 TCCTCCAAGCCCAGACCA 59.793 61.111 0.00 0.00 0.00 4.02
201 202 1.463214 TCCTCCAAGCCCAGACCAA 60.463 57.895 0.00 0.00 0.00 3.67
202 203 1.065410 TCCTCCAAGCCCAGACCAAA 61.065 55.000 0.00 0.00 0.00 3.28
203 204 0.610232 CCTCCAAGCCCAGACCAAAG 60.610 60.000 0.00 0.00 0.00 2.77
204 205 0.401738 CTCCAAGCCCAGACCAAAGA 59.598 55.000 0.00 0.00 0.00 2.52
205 206 0.850100 TCCAAGCCCAGACCAAAGAA 59.150 50.000 0.00 0.00 0.00 2.52
206 207 1.202927 TCCAAGCCCAGACCAAAGAAG 60.203 52.381 0.00 0.00 0.00 2.85
207 208 1.251251 CAAGCCCAGACCAAAGAAGG 58.749 55.000 0.00 0.00 0.00 3.46
208 209 0.113190 AAGCCCAGACCAAAGAAGGG 59.887 55.000 0.00 0.00 42.55 3.95
209 210 0.772124 AGCCCAGACCAAAGAAGGGA 60.772 55.000 0.00 0.00 42.25 4.20
210 211 0.322906 GCCCAGACCAAAGAAGGGAG 60.323 60.000 0.00 0.00 42.25 4.30
211 212 0.329596 CCCAGACCAAAGAAGGGAGG 59.670 60.000 0.00 0.00 42.25 4.30
212 213 1.362224 CCAGACCAAAGAAGGGAGGA 58.638 55.000 0.00 0.00 0.00 3.71
213 214 1.705186 CCAGACCAAAGAAGGGAGGAA 59.295 52.381 0.00 0.00 0.00 3.36
214 215 2.108250 CCAGACCAAAGAAGGGAGGAAA 59.892 50.000 0.00 0.00 0.00 3.13
215 216 3.149981 CAGACCAAAGAAGGGAGGAAAC 58.850 50.000 0.00 0.00 0.00 2.78
216 217 2.108425 AGACCAAAGAAGGGAGGAAACC 59.892 50.000 0.00 0.00 0.00 3.27
229 230 3.611025 AGGAAACCCCTGTGAAATTGA 57.389 42.857 0.00 0.00 45.61 2.57
230 231 3.230976 AGGAAACCCCTGTGAAATTGAC 58.769 45.455 0.00 0.00 45.61 3.18
231 232 2.299013 GGAAACCCCTGTGAAATTGACC 59.701 50.000 0.00 0.00 0.00 4.02
232 233 2.009681 AACCCCTGTGAAATTGACCC 57.990 50.000 0.00 0.00 0.00 4.46
233 234 1.158007 ACCCCTGTGAAATTGACCCT 58.842 50.000 0.00 0.00 0.00 4.34
234 235 1.203050 ACCCCTGTGAAATTGACCCTG 60.203 52.381 0.00 0.00 0.00 4.45
235 236 1.203050 CCCCTGTGAAATTGACCCTGT 60.203 52.381 0.00 0.00 0.00 4.00
236 237 2.162681 CCCTGTGAAATTGACCCTGTC 58.837 52.381 0.00 0.00 0.00 3.51
237 238 2.162681 CCTGTGAAATTGACCCTGTCC 58.837 52.381 0.00 0.00 0.00 4.02
238 239 2.162681 CTGTGAAATTGACCCTGTCCC 58.837 52.381 0.00 0.00 0.00 4.46
239 240 1.496857 TGTGAAATTGACCCTGTCCCA 59.503 47.619 0.00 0.00 0.00 4.37
240 241 2.109834 TGTGAAATTGACCCTGTCCCAT 59.890 45.455 0.00 0.00 0.00 4.00
241 242 3.165071 GTGAAATTGACCCTGTCCCATT 58.835 45.455 0.00 0.00 0.00 3.16
242 243 3.578282 GTGAAATTGACCCTGTCCCATTT 59.422 43.478 0.00 0.00 31.48 2.32
243 244 4.040339 GTGAAATTGACCCTGTCCCATTTT 59.960 41.667 0.00 0.00 30.03 1.82
244 245 4.040217 TGAAATTGACCCTGTCCCATTTTG 59.960 41.667 0.00 0.00 30.03 2.44
245 246 2.008242 TTGACCCTGTCCCATTTTGG 57.992 50.000 0.00 0.00 37.25 3.28
246 247 0.856982 TGACCCTGTCCCATTTTGGT 59.143 50.000 0.00 0.00 35.17 3.67
247 248 1.219213 TGACCCTGTCCCATTTTGGTT 59.781 47.619 0.00 0.00 35.17 3.67
248 249 1.893137 GACCCTGTCCCATTTTGGTTC 59.107 52.381 0.00 0.00 35.17 3.62
249 250 1.503347 ACCCTGTCCCATTTTGGTTCT 59.497 47.619 0.00 0.00 35.17 3.01
250 251 2.090775 ACCCTGTCCCATTTTGGTTCTT 60.091 45.455 0.00 0.00 35.17 2.52
251 252 2.562738 CCCTGTCCCATTTTGGTTCTTC 59.437 50.000 0.00 0.00 35.17 2.87
252 253 3.500343 CCTGTCCCATTTTGGTTCTTCT 58.500 45.455 0.00 0.00 35.17 2.85
253 254 3.507622 CCTGTCCCATTTTGGTTCTTCTC 59.492 47.826 0.00 0.00 35.17 2.87
254 255 4.401925 CTGTCCCATTTTGGTTCTTCTCT 58.598 43.478 0.00 0.00 35.17 3.10
255 256 5.514834 CCTGTCCCATTTTGGTTCTTCTCTA 60.515 44.000 0.00 0.00 35.17 2.43
256 257 5.560724 TGTCCCATTTTGGTTCTTCTCTAG 58.439 41.667 0.00 0.00 35.17 2.43
257 258 5.073144 TGTCCCATTTTGGTTCTTCTCTAGT 59.927 40.000 0.00 0.00 35.17 2.57
258 259 5.644206 GTCCCATTTTGGTTCTTCTCTAGTC 59.356 44.000 0.00 0.00 35.17 2.59
259 260 4.944317 CCCATTTTGGTTCTTCTCTAGTCC 59.056 45.833 0.00 0.00 35.17 3.85
260 261 5.280727 CCCATTTTGGTTCTTCTCTAGTCCT 60.281 44.000 0.00 0.00 35.17 3.85
261 262 5.877564 CCATTTTGGTTCTTCTCTAGTCCTC 59.122 44.000 0.00 0.00 31.35 3.71
262 263 6.467677 CATTTTGGTTCTTCTCTAGTCCTCA 58.532 40.000 0.00 0.00 0.00 3.86
263 264 6.688073 TTTTGGTTCTTCTCTAGTCCTCAT 57.312 37.500 0.00 0.00 0.00 2.90
264 265 7.792364 TTTTGGTTCTTCTCTAGTCCTCATA 57.208 36.000 0.00 0.00 0.00 2.15
265 266 7.979786 TTTGGTTCTTCTCTAGTCCTCATAT 57.020 36.000 0.00 0.00 0.00 1.78
462 618 5.099042 ACGTCTTTAACCAAGGATGCTAT 57.901 39.130 0.00 0.00 31.60 2.97
463 619 6.229936 ACGTCTTTAACCAAGGATGCTATA 57.770 37.500 0.00 0.00 31.60 1.31
508 932 3.004862 CAAACACCACTACGGATAACCC 58.995 50.000 0.00 0.00 38.63 4.11
535 959 0.394565 CAATCCTAAGGAGCTCCCCG 59.605 60.000 29.54 16.89 34.05 5.73
537 961 3.917760 CCTAAGGAGCTCCCCGCG 61.918 72.222 29.54 14.72 45.59 6.46
546 970 2.861101 GCTCCCCGCGAGATGATCA 61.861 63.158 8.23 0.00 41.63 2.92
547 971 1.742146 CTCCCCGCGAGATGATCAA 59.258 57.895 8.23 0.00 41.63 2.57
548 972 0.319383 CTCCCCGCGAGATGATCAAG 60.319 60.000 8.23 0.00 41.63 3.02
549 973 1.958205 CCCCGCGAGATGATCAAGC 60.958 63.158 8.23 2.59 0.00 4.01
550 974 1.227350 CCCGCGAGATGATCAAGCA 60.227 57.895 8.23 0.00 0.00 3.91
551 975 0.811219 CCCGCGAGATGATCAAGCAA 60.811 55.000 8.23 0.00 0.00 3.91
552 976 0.302890 CCGCGAGATGATCAAGCAAC 59.697 55.000 8.23 0.00 0.00 4.17
553 977 0.302890 CGCGAGATGATCAAGCAACC 59.697 55.000 0.00 0.00 0.00 3.77
554 978 1.661341 GCGAGATGATCAAGCAACCT 58.339 50.000 0.00 0.00 0.00 3.50
555 979 2.012673 GCGAGATGATCAAGCAACCTT 58.987 47.619 0.00 0.00 0.00 3.50
556 980 3.198068 GCGAGATGATCAAGCAACCTTA 58.802 45.455 0.00 0.00 0.00 2.69
557 981 3.001736 GCGAGATGATCAAGCAACCTTAC 59.998 47.826 0.00 0.00 0.00 2.34
558 982 3.557595 CGAGATGATCAAGCAACCTTACC 59.442 47.826 0.00 0.00 0.00 2.85
559 983 4.681781 CGAGATGATCAAGCAACCTTACCT 60.682 45.833 0.00 0.00 0.00 3.08
560 984 5.184892 AGATGATCAAGCAACCTTACCTT 57.815 39.130 0.00 0.00 0.00 3.50
561 985 6.313519 AGATGATCAAGCAACCTTACCTTA 57.686 37.500 0.00 0.00 0.00 2.69
562 986 6.904626 AGATGATCAAGCAACCTTACCTTAT 58.095 36.000 0.00 0.00 0.00 1.73
563 987 6.769822 AGATGATCAAGCAACCTTACCTTATG 59.230 38.462 0.00 0.00 0.00 1.90
564 988 4.640201 TGATCAAGCAACCTTACCTTATGC 59.360 41.667 0.00 0.00 37.28 3.14
565 989 4.027674 TCAAGCAACCTTACCTTATGCA 57.972 40.909 0.00 0.00 39.42 3.96
566 990 4.599041 TCAAGCAACCTTACCTTATGCAT 58.401 39.130 3.79 3.79 39.42 3.96
567 991 4.640201 TCAAGCAACCTTACCTTATGCATC 59.360 41.667 0.19 0.00 39.42 3.91
568 992 4.235079 AGCAACCTTACCTTATGCATCA 57.765 40.909 0.19 0.00 39.42 3.07
579 1003 0.178767 TATGCATCAGGAAGCAGCGT 59.821 50.000 0.19 0.00 44.94 5.07
587 1011 2.143122 CAGGAAGCAGCGTAACTTGAA 58.857 47.619 0.00 0.00 0.00 2.69
592 1016 2.766313 AGCAGCGTAACTTGAACATCA 58.234 42.857 0.00 0.00 0.00 3.07
650 1078 0.247695 GAATGTACCGCAAGCTTCGC 60.248 55.000 0.00 3.22 0.00 4.70
651 1079 0.673644 AATGTACCGCAAGCTTCGCT 60.674 50.000 15.63 5.66 42.56 4.93
659 1087 1.060553 CGCAAGCTTCGCTATTTTCGA 59.939 47.619 15.63 0.00 38.25 3.71
696 1124 3.406595 CTCCCTCCGCCCCACAATC 62.407 68.421 0.00 0.00 0.00 2.67
700 1128 0.179045 CCTCCGCCCCACAATCTAAG 60.179 60.000 0.00 0.00 0.00 2.18
704 1132 0.947244 CGCCCCACAATCTAAGATGC 59.053 55.000 0.00 0.00 0.00 3.91
800 1228 9.804758 GTGATGGGCATATATAGTAAACTAGAC 57.195 37.037 0.00 0.00 0.00 2.59
803 1231 7.823665 TGGGCATATATAGTAAACTAGACACG 58.176 38.462 0.00 0.00 0.00 4.49
814 1242 1.187087 CTAGACACGGAAGGCCTCTT 58.813 55.000 5.23 0.00 35.62 2.85
816 1244 0.035458 AGACACGGAAGGCCTCTTTG 59.965 55.000 5.23 3.66 32.52 2.77
822 1250 2.039879 ACGGAAGGCCTCTTTGTGTATT 59.960 45.455 5.23 0.00 32.52 1.89
823 1251 2.678336 CGGAAGGCCTCTTTGTGTATTC 59.322 50.000 5.23 0.00 32.52 1.75
824 1252 3.619979 CGGAAGGCCTCTTTGTGTATTCT 60.620 47.826 5.23 0.00 32.52 2.40
825 1253 4.382685 CGGAAGGCCTCTTTGTGTATTCTA 60.383 45.833 5.23 0.00 32.52 2.10
826 1254 5.119694 GGAAGGCCTCTTTGTGTATTCTAG 58.880 45.833 5.23 0.00 32.52 2.43
827 1255 5.338463 GGAAGGCCTCTTTGTGTATTCTAGT 60.338 44.000 5.23 0.00 32.52 2.57
828 1256 6.127140 GGAAGGCCTCTTTGTGTATTCTAGTA 60.127 42.308 5.23 0.00 32.52 1.82
915 1352 2.095567 CAGTTGGAGCCACGAATTCTTG 60.096 50.000 4.98 4.98 0.00 3.02
926 1363 4.141711 CCACGAATTCTTGGGGAGAAGATA 60.142 45.833 20.60 0.00 46.99 1.98
931 1368 8.272173 ACGAATTCTTGGGGAGAAGATAATAAA 58.728 33.333 3.52 0.00 46.99 1.40
934 1371 9.426534 AATTCTTGGGGAGAAGATAATAAAAGG 57.573 33.333 0.00 0.00 46.99 3.11
936 1373 7.574607 TCTTGGGGAGAAGATAATAAAAGGAC 58.425 38.462 0.00 0.00 0.00 3.85
969 1406 4.335647 CCCAGCCAGCACGTTCCT 62.336 66.667 0.00 0.00 0.00 3.36
971 1408 2.620112 CCAGCCAGCACGTTCCTTG 61.620 63.158 0.00 0.00 0.00 3.61
972 1409 2.281761 AGCCAGCACGTTCCTTGG 60.282 61.111 0.00 0.00 0.00 3.61
973 1410 2.281484 GCCAGCACGTTCCTTGGA 60.281 61.111 8.19 0.00 32.34 3.53
974 1411 1.896660 GCCAGCACGTTCCTTGGAA 60.897 57.895 8.19 0.00 32.34 3.53
977 1414 1.600916 AGCACGTTCCTTGGAAGGC 60.601 57.895 18.49 14.37 46.06 4.35
978 1415 1.600916 GCACGTTCCTTGGAAGGCT 60.601 57.895 18.49 6.67 46.06 4.58
980 1417 0.955919 CACGTTCCTTGGAAGGCTCC 60.956 60.000 18.49 0.00 46.06 4.70
982 1419 0.391793 CGTTCCTTGGAAGGCTCCTC 60.392 60.000 8.83 0.00 46.06 3.71
984 1421 1.208165 TTCCTTGGAAGGCTCCTCCC 61.208 60.000 2.82 0.00 46.06 4.30
985 1422 1.617839 CCTTGGAAGGCTCCTCCCT 60.618 63.158 2.82 0.00 42.94 4.20
986 1423 1.631071 CCTTGGAAGGCTCCTCCCTC 61.631 65.000 2.82 0.00 42.94 4.30
987 1424 1.616628 TTGGAAGGCTCCTCCCTCC 60.617 63.158 2.82 0.00 42.94 4.30
988 1425 2.041265 GGAAGGCTCCTCCCTCCA 59.959 66.667 0.00 0.00 38.88 3.86
990 1427 1.306568 GAAGGCTCCTCCCTCCAGT 60.307 63.158 0.00 0.00 32.93 4.00
991 1428 1.614824 AAGGCTCCTCCCTCCAGTG 60.615 63.158 0.00 0.00 32.93 3.66
992 1429 2.039624 GGCTCCTCCCTCCAGTGA 59.960 66.667 0.00 0.00 0.00 3.41
993 1430 2.063378 GGCTCCTCCCTCCAGTGAG 61.063 68.421 0.00 0.00 38.42 3.51
1032 1532 2.439507 TCCAGCTCCAGGTAATTCCATC 59.560 50.000 0.00 0.00 39.02 3.51
1040 1540 3.447229 CCAGGTAATTCCATCCACCAAAC 59.553 47.826 0.00 0.00 39.02 2.93
1063 1563 4.571984 CCAAACTCGAGATGCATTGTATGA 59.428 41.667 21.68 0.00 0.00 2.15
1064 1564 5.237996 CCAAACTCGAGATGCATTGTATGAT 59.762 40.000 21.68 0.00 0.00 2.45
1065 1565 6.361114 CAAACTCGAGATGCATTGTATGATC 58.639 40.000 21.68 0.00 0.00 2.92
1086 1586 3.913799 TCATTGGTTGAGGTTCCTTCCTA 59.086 43.478 0.00 0.00 38.02 2.94
1088 1588 2.986050 TGGTTGAGGTTCCTTCCTACT 58.014 47.619 0.00 0.00 38.02 2.57
1089 1589 2.904434 TGGTTGAGGTTCCTTCCTACTC 59.096 50.000 0.00 0.00 38.02 2.59
1091 1591 2.904434 GTTGAGGTTCCTTCCTACTCCA 59.096 50.000 0.00 0.00 38.02 3.86
1092 1592 3.491766 TGAGGTTCCTTCCTACTCCAT 57.508 47.619 0.00 0.00 38.02 3.41
1093 1593 3.375699 TGAGGTTCCTTCCTACTCCATC 58.624 50.000 0.00 0.00 38.02 3.51
1094 1594 2.701423 GAGGTTCCTTCCTACTCCATCC 59.299 54.545 0.00 0.00 38.02 3.51
1095 1595 1.413077 GGTTCCTTCCTACTCCATCCG 59.587 57.143 0.00 0.00 0.00 4.18
1096 1596 2.108970 GTTCCTTCCTACTCCATCCGT 58.891 52.381 0.00 0.00 0.00 4.69
1097 1597 2.500504 GTTCCTTCCTACTCCATCCGTT 59.499 50.000 0.00 0.00 0.00 4.44
1098 1598 2.385803 TCCTTCCTACTCCATCCGTTC 58.614 52.381 0.00 0.00 0.00 3.95
1099 1599 1.067212 CCTTCCTACTCCATCCGTTCG 59.933 57.143 0.00 0.00 0.00 3.95
1100 1600 1.067212 CTTCCTACTCCATCCGTTCGG 59.933 57.143 4.74 4.74 0.00 4.30
1101 1601 0.256752 TCCTACTCCATCCGTTCGGA 59.743 55.000 16.22 16.22 38.82 4.55
1102 1602 1.108776 CCTACTCCATCCGTTCGGAA 58.891 55.000 17.72 1.17 37.88 4.30
1103 1603 1.687123 CCTACTCCATCCGTTCGGAAT 59.313 52.381 17.72 4.49 37.88 3.01
1104 1604 2.102588 CCTACTCCATCCGTTCGGAATT 59.897 50.000 17.72 0.00 37.88 2.17
1105 1605 3.319972 CCTACTCCATCCGTTCGGAATTA 59.680 47.826 17.72 5.51 37.88 1.40
1106 1606 3.175109 ACTCCATCCGTTCGGAATTAC 57.825 47.619 17.72 0.00 37.88 1.89
1107 1607 2.764572 ACTCCATCCGTTCGGAATTACT 59.235 45.455 17.72 0.00 37.88 2.24
1108 1608 3.197116 ACTCCATCCGTTCGGAATTACTT 59.803 43.478 17.72 0.00 37.88 2.24
1109 1609 3.527533 TCCATCCGTTCGGAATTACTTG 58.472 45.455 17.72 10.09 37.88 3.16
1110 1610 3.055675 TCCATCCGTTCGGAATTACTTGT 60.056 43.478 17.72 0.00 37.88 3.16
1111 1611 3.308866 CCATCCGTTCGGAATTACTTGTC 59.691 47.826 17.72 0.00 37.88 3.18
1112 1612 2.598589 TCCGTTCGGAATTACTTGTCG 58.401 47.619 11.66 0.00 0.00 4.35
1113 1613 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1114 1614 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
1115 1615 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
1116 1616 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
1117 1617 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
1118 1618 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
1119 1619 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
1120 1620 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
1121 1621 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
1122 1622 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
1123 1623 3.799137 TTACTTGTCGCGAAAATGGAC 57.201 42.857 13.05 0.00 0.00 4.02
1124 1624 0.511221 ACTTGTCGCGAAAATGGACG 59.489 50.000 13.05 2.76 33.45 4.79
1151 1651 3.728845 TCCTGAGACCTTTTTGTTCTCG 58.271 45.455 0.00 0.00 0.00 4.04
1515 2056 2.597340 CTCCCCGCCATGTTCCAT 59.403 61.111 0.00 0.00 0.00 3.41
1533 2129 1.265095 CATGGTACGCATCTGCCATTC 59.735 52.381 0.00 0.00 39.47 2.67
1542 2138 2.802057 GCATCTGCCATTCAAATGCTCC 60.802 50.000 0.00 0.00 39.62 4.70
1553 5366 3.411446 TCAAATGCTCCATCGTTGACTT 58.589 40.909 0.00 0.00 0.00 3.01
1554 5367 3.436704 TCAAATGCTCCATCGTTGACTTC 59.563 43.478 0.00 0.00 0.00 3.01
1555 5368 2.768253 ATGCTCCATCGTTGACTTCA 57.232 45.000 0.00 0.00 0.00 3.02
1556 5369 2.542020 TGCTCCATCGTTGACTTCAA 57.458 45.000 0.00 0.00 0.00 2.69
1559 5372 3.189080 TGCTCCATCGTTGACTTCAATTG 59.811 43.478 0.00 0.00 38.24 2.32
1566 5379 2.659757 CGTTGACTTCAATTGCATGCTG 59.340 45.455 20.33 9.27 38.24 4.41
1592 6057 1.868930 GCGGCTCTGTCTGATCTGATG 60.869 57.143 5.52 2.94 0.00 3.07
1607 6085 2.772739 GATGTGAACCATCTGCGCT 58.227 52.632 9.73 0.00 45.50 5.92
1608 6086 0.376152 GATGTGAACCATCTGCGCTG 59.624 55.000 9.73 8.88 45.50 5.18
1609 6087 1.651240 ATGTGAACCATCTGCGCTGC 61.651 55.000 9.73 0.00 0.00 5.25
1610 6088 2.037136 GTGAACCATCTGCGCTGCT 61.037 57.895 9.73 0.00 0.00 4.24
1611 6089 2.036571 TGAACCATCTGCGCTGCTG 61.037 57.895 9.73 10.33 0.00 4.41
1612 6090 3.392595 GAACCATCTGCGCTGCTGC 62.393 63.158 9.73 5.34 0.00 5.25
1613 6091 3.914579 AACCATCTGCGCTGCTGCT 62.915 57.895 9.73 0.00 36.97 4.24
2020 6498 3.307906 CCGTCCGACCTGTCCCAA 61.308 66.667 0.00 0.00 0.00 4.12
2031 6509 2.116125 GTCCCAAGCCAAGCACCT 59.884 61.111 0.00 0.00 0.00 4.00
2041 6519 3.329889 AAGCACCTCATGGCCCGA 61.330 61.111 0.00 0.00 36.63 5.14
2063 6541 1.484038 CTTCCTGGAGCTCAGCTAGT 58.516 55.000 17.19 0.00 39.88 2.57
2097 6589 0.319297 ACTTTGGTCGCCGACTACAC 60.319 55.000 17.76 0.40 32.47 2.90
2106 6598 1.699343 GCCGACTACACTGTTGAGTC 58.301 55.000 8.23 8.23 36.95 3.36
2107 6599 1.269998 GCCGACTACACTGTTGAGTCT 59.730 52.381 13.90 0.00 37.95 3.24
2108 6600 2.922758 GCCGACTACACTGTTGAGTCTG 60.923 54.545 13.90 10.03 37.95 3.51
2110 6602 3.556513 CGACTACACTGTTGAGTCTGTC 58.443 50.000 13.90 5.54 37.95 3.51
2111 6603 3.251245 CGACTACACTGTTGAGTCTGTCT 59.749 47.826 13.90 0.00 37.95 3.41
2157 6656 2.094417 GCTTCAATCTTGCTACCACGAC 59.906 50.000 0.00 0.00 0.00 4.34
2193 6692 5.694006 GCGATCTGCATAAATGTACTTCTCT 59.306 40.000 4.93 0.00 45.45 3.10
2199 6698 9.283768 TCTGCATAAATGTACTTCTCTTTTTGA 57.716 29.630 0.00 0.00 0.00 2.69
2200 6699 9.552114 CTGCATAAATGTACTTCTCTTTTTGAG 57.448 33.333 0.00 0.00 43.96 3.02
2222 6721 9.461312 TTGAGATAGCATAAATGTACTTTTGGT 57.539 29.630 15.08 9.24 0.00 3.67
2223 6722 8.892723 TGAGATAGCATAAATGTACTTTTGGTG 58.107 33.333 15.08 13.81 0.00 4.17
2224 6723 8.807948 AGATAGCATAAATGTACTTTTGGTGT 57.192 30.769 15.08 5.87 0.00 4.16
2225 6724 8.677300 AGATAGCATAAATGTACTTTTGGTGTG 58.323 33.333 15.08 10.07 0.00 3.82
2226 6725 6.648879 AGCATAAATGTACTTTTGGTGTGT 57.351 33.333 15.08 5.40 0.00 3.72
2227 6726 6.677913 AGCATAAATGTACTTTTGGTGTGTC 58.322 36.000 15.08 4.31 0.00 3.67
2228 6727 6.490040 AGCATAAATGTACTTTTGGTGTGTCT 59.510 34.615 15.08 5.95 0.00 3.41
2229 6728 6.801862 GCATAAATGTACTTTTGGTGTGTCTC 59.198 38.462 15.08 1.05 0.00 3.36
2230 6729 5.418310 AAATGTACTTTTGGTGTGTCTCG 57.582 39.130 5.97 0.00 0.00 4.04
2231 6730 3.530265 TGTACTTTTGGTGTGTCTCGT 57.470 42.857 0.00 0.00 0.00 4.18
2232 6731 4.652421 TGTACTTTTGGTGTGTCTCGTA 57.348 40.909 0.00 0.00 0.00 3.43
2233 6732 4.613944 TGTACTTTTGGTGTGTCTCGTAG 58.386 43.478 0.00 0.00 0.00 3.51
2234 6733 4.338964 TGTACTTTTGGTGTGTCTCGTAGA 59.661 41.667 0.00 0.00 0.00 2.59
2235 6734 3.714391 ACTTTTGGTGTGTCTCGTAGAC 58.286 45.455 7.74 7.74 45.26 2.59
2236 6735 3.383825 ACTTTTGGTGTGTCTCGTAGACT 59.616 43.478 13.65 0.00 45.27 3.24
2237 6736 3.364889 TTTGGTGTGTCTCGTAGACTG 57.635 47.619 13.65 0.00 45.27 3.51
2238 6737 2.265589 TGGTGTGTCTCGTAGACTGA 57.734 50.000 13.65 1.53 45.27 3.41
2239 6738 2.791655 TGGTGTGTCTCGTAGACTGAT 58.208 47.619 13.65 0.00 45.27 2.90
2240 6739 2.488153 TGGTGTGTCTCGTAGACTGATG 59.512 50.000 13.65 0.00 45.27 3.07
2241 6740 2.159366 GGTGTGTCTCGTAGACTGATGG 60.159 54.545 13.65 0.00 45.27 3.51
2242 6741 2.747989 GTGTGTCTCGTAGACTGATGGA 59.252 50.000 13.65 0.00 45.27 3.41
2243 6742 3.010420 TGTGTCTCGTAGACTGATGGAG 58.990 50.000 13.65 0.00 45.27 3.86
2244 6743 2.017782 TGTCTCGTAGACTGATGGAGC 58.982 52.381 13.65 0.00 45.27 4.70
2245 6744 1.003331 GTCTCGTAGACTGATGGAGCG 60.003 57.143 7.50 0.00 41.88 5.03
2246 6745 1.134491 TCTCGTAGACTGATGGAGCGA 60.134 52.381 0.00 0.00 0.00 4.93
2247 6746 1.262950 CTCGTAGACTGATGGAGCGAG 59.737 57.143 0.00 0.00 38.36 5.03
2248 6747 1.134491 TCGTAGACTGATGGAGCGAGA 60.134 52.381 0.00 0.00 0.00 4.04
2249 6748 1.262950 CGTAGACTGATGGAGCGAGAG 59.737 57.143 0.00 0.00 0.00 3.20
2250 6749 2.566913 GTAGACTGATGGAGCGAGAGA 58.433 52.381 0.00 0.00 0.00 3.10
2251 6750 1.679139 AGACTGATGGAGCGAGAGAG 58.321 55.000 0.00 0.00 0.00 3.20
2252 6751 0.667993 GACTGATGGAGCGAGAGAGG 59.332 60.000 0.00 0.00 0.00 3.69
2253 6752 0.257328 ACTGATGGAGCGAGAGAGGA 59.743 55.000 0.00 0.00 0.00 3.71
2254 6753 1.133513 ACTGATGGAGCGAGAGAGGAT 60.134 52.381 0.00 0.00 0.00 3.24
2255 6754 1.962807 CTGATGGAGCGAGAGAGGATT 59.037 52.381 0.00 0.00 0.00 3.01
2256 6755 2.364970 CTGATGGAGCGAGAGAGGATTT 59.635 50.000 0.00 0.00 0.00 2.17
2257 6756 2.768527 TGATGGAGCGAGAGAGGATTTT 59.231 45.455 0.00 0.00 0.00 1.82
2258 6757 2.969628 TGGAGCGAGAGAGGATTTTC 57.030 50.000 0.00 0.00 0.00 2.29
2259 6758 2.461695 TGGAGCGAGAGAGGATTTTCT 58.538 47.619 0.00 0.00 0.00 2.52
2260 6759 3.632333 TGGAGCGAGAGAGGATTTTCTA 58.368 45.455 0.00 0.00 0.00 2.10
2261 6760 3.634448 TGGAGCGAGAGAGGATTTTCTAG 59.366 47.826 0.00 0.00 0.00 2.43
2262 6761 3.552068 GGAGCGAGAGAGGATTTTCTAGC 60.552 52.174 0.00 0.00 40.83 3.42
2263 6762 3.295973 AGCGAGAGAGGATTTTCTAGCT 58.704 45.455 3.74 3.74 44.21 3.32
2264 6763 3.317993 AGCGAGAGAGGATTTTCTAGCTC 59.682 47.826 0.00 0.00 45.33 4.09
2265 6764 3.317993 GCGAGAGAGGATTTTCTAGCTCT 59.682 47.826 0.00 0.00 38.51 4.09
2266 6765 4.517453 GCGAGAGAGGATTTTCTAGCTCTA 59.483 45.833 0.00 0.00 38.51 2.43
2267 6766 5.183140 GCGAGAGAGGATTTTCTAGCTCTAT 59.817 44.000 0.00 0.00 38.51 1.98
2268 6767 6.373216 GCGAGAGAGGATTTTCTAGCTCTATA 59.627 42.308 0.00 0.00 38.51 1.31
2269 6768 7.625606 GCGAGAGAGGATTTTCTAGCTCTATAC 60.626 44.444 0.00 0.00 38.51 1.47
2270 6769 7.148306 CGAGAGAGGATTTTCTAGCTCTATACC 60.148 44.444 0.00 0.00 33.26 2.73
2271 6770 7.765622 AGAGAGGATTTTCTAGCTCTATACCT 58.234 38.462 0.00 0.00 31.49 3.08
2272 6771 8.896658 AGAGAGGATTTTCTAGCTCTATACCTA 58.103 37.037 0.00 0.00 31.49 3.08
2273 6772 9.695155 GAGAGGATTTTCTAGCTCTATACCTAT 57.305 37.037 0.00 0.00 0.00 2.57
2276 6775 9.398538 AGGATTTTCTAGCTCTATACCTATACG 57.601 37.037 0.00 0.00 0.00 3.06
2277 6776 8.623030 GGATTTTCTAGCTCTATACCTATACGG 58.377 40.741 0.00 0.00 39.35 4.02
2279 6778 8.558973 TTTTCTAGCTCTATACCTATACGGTC 57.441 38.462 0.00 0.00 44.93 4.79
2280 6779 7.493499 TTCTAGCTCTATACCTATACGGTCT 57.507 40.000 0.00 0.00 44.93 3.85
2281 6780 8.601047 TTCTAGCTCTATACCTATACGGTCTA 57.399 38.462 0.00 0.00 44.93 2.59
2282 6781 8.780616 TCTAGCTCTATACCTATACGGTCTAT 57.219 38.462 0.00 0.00 44.93 1.98
2283 6782 9.874195 TCTAGCTCTATACCTATACGGTCTATA 57.126 37.037 0.00 0.00 44.93 1.31
2284 6783 9.912634 CTAGCTCTATACCTATACGGTCTATAC 57.087 40.741 0.00 0.00 44.93 1.47
2285 6784 7.734942 AGCTCTATACCTATACGGTCTATACC 58.265 42.308 0.00 0.00 44.93 2.73
2286 6785 7.346698 AGCTCTATACCTATACGGTCTATACCA 59.653 40.741 0.00 0.00 44.93 3.25
2287 6786 8.156165 GCTCTATACCTATACGGTCTATACCAT 58.844 40.741 0.00 0.00 44.93 3.55
2290 6789 9.416794 CTATACCTATACGGTCTATACCATACG 57.583 40.741 0.00 0.00 44.93 3.06
2291 6790 6.299805 ACCTATACGGTCTATACCATACGA 57.700 41.667 0.00 0.00 44.93 3.43
2292 6791 6.711277 ACCTATACGGTCTATACCATACGAA 58.289 40.000 0.00 0.00 44.93 3.85
2293 6792 6.820656 ACCTATACGGTCTATACCATACGAAG 59.179 42.308 0.00 0.00 44.93 3.79
2294 6793 7.527868 ACCTATACGGTCTATACCATACGAAGT 60.528 40.741 0.00 0.00 44.93 3.01
2302 6801 9.924650 GGTCTATACCATACGAAGTAATTGATT 57.075 33.333 0.00 0.00 45.98 2.57
2736 7250 3.830744 TCTCGACCTTCTTTTGTCCAA 57.169 42.857 0.00 0.00 0.00 3.53
2822 7340 3.387699 CCCCAGGAATTTGTGTGTCTTTT 59.612 43.478 0.00 0.00 0.00 2.27
2828 7346 7.925483 CCAGGAATTTGTGTGTCTTTTCATTTA 59.075 33.333 0.00 0.00 0.00 1.40
2978 7500 0.925720 ATTTGGCATGGGGAGGGAGA 60.926 55.000 0.00 0.00 0.00 3.71
3029 7552 2.236146 AGTTGCCATCTATCGTTGTCCA 59.764 45.455 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.054860 ACAAACTAGATGGTCAGCATTACT 57.945 37.500 0.00 0.00 0.00 2.24
57 58 7.011482 CCTTACAAACTAGATGGTCAGCATTAC 59.989 40.741 0.00 0.00 0.00 1.89
58 59 7.047891 CCTTACAAACTAGATGGTCAGCATTA 58.952 38.462 0.00 0.00 0.00 1.90
59 60 5.882557 CCTTACAAACTAGATGGTCAGCATT 59.117 40.000 0.00 0.00 0.00 3.56
60 61 5.045578 ACCTTACAAACTAGATGGTCAGCAT 60.046 40.000 0.00 0.00 0.00 3.79
61 62 4.286032 ACCTTACAAACTAGATGGTCAGCA 59.714 41.667 0.00 0.00 0.00 4.41
62 63 4.833390 ACCTTACAAACTAGATGGTCAGC 58.167 43.478 0.00 0.00 0.00 4.26
63 64 6.464222 TCAACCTTACAAACTAGATGGTCAG 58.536 40.000 0.00 0.00 0.00 3.51
64 65 6.428083 TCAACCTTACAAACTAGATGGTCA 57.572 37.500 0.00 0.00 0.00 4.02
65 66 5.875359 CCTCAACCTTACAAACTAGATGGTC 59.125 44.000 0.00 0.00 0.00 4.02
66 67 5.546499 TCCTCAACCTTACAAACTAGATGGT 59.454 40.000 0.00 0.00 0.00 3.55
67 68 6.049955 TCCTCAACCTTACAAACTAGATGG 57.950 41.667 0.00 0.00 0.00 3.51
68 69 9.838339 ATTATCCTCAACCTTACAAACTAGATG 57.162 33.333 0.00 0.00 0.00 2.90
73 74 9.449719 CAAGTATTATCCTCAACCTTACAAACT 57.550 33.333 0.00 0.00 0.00 2.66
74 75 9.227777 ACAAGTATTATCCTCAACCTTACAAAC 57.772 33.333 0.00 0.00 0.00 2.93
75 76 9.226606 CACAAGTATTATCCTCAACCTTACAAA 57.773 33.333 0.00 0.00 0.00 2.83
76 77 8.598916 TCACAAGTATTATCCTCAACCTTACAA 58.401 33.333 0.00 0.00 0.00 2.41
77 78 8.038944 GTCACAAGTATTATCCTCAACCTTACA 58.961 37.037 0.00 0.00 0.00 2.41
78 79 8.038944 TGTCACAAGTATTATCCTCAACCTTAC 58.961 37.037 0.00 0.00 0.00 2.34
79 80 8.038944 GTGTCACAAGTATTATCCTCAACCTTA 58.961 37.037 0.00 0.00 0.00 2.69
80 81 6.879458 GTGTCACAAGTATTATCCTCAACCTT 59.121 38.462 0.00 0.00 0.00 3.50
81 82 6.407202 GTGTCACAAGTATTATCCTCAACCT 58.593 40.000 0.00 0.00 0.00 3.50
82 83 5.291128 CGTGTCACAAGTATTATCCTCAACC 59.709 44.000 3.42 0.00 0.00 3.77
83 84 5.220416 GCGTGTCACAAGTATTATCCTCAAC 60.220 44.000 3.42 0.00 0.00 3.18
84 85 4.868171 GCGTGTCACAAGTATTATCCTCAA 59.132 41.667 3.42 0.00 0.00 3.02
85 86 4.159693 AGCGTGTCACAAGTATTATCCTCA 59.840 41.667 3.42 0.00 0.00 3.86
86 87 4.683832 AGCGTGTCACAAGTATTATCCTC 58.316 43.478 3.42 0.00 0.00 3.71
87 88 4.737855 AGCGTGTCACAAGTATTATCCT 57.262 40.909 3.42 0.00 0.00 3.24
88 89 5.005779 CAGAAGCGTGTCACAAGTATTATCC 59.994 44.000 3.42 0.00 0.00 2.59
89 90 5.805486 TCAGAAGCGTGTCACAAGTATTATC 59.195 40.000 3.42 0.00 0.00 1.75
90 91 5.577164 GTCAGAAGCGTGTCACAAGTATTAT 59.423 40.000 3.42 0.00 0.00 1.28
91 92 4.921515 GTCAGAAGCGTGTCACAAGTATTA 59.078 41.667 3.42 0.00 0.00 0.98
92 93 3.741344 GTCAGAAGCGTGTCACAAGTATT 59.259 43.478 3.42 0.00 0.00 1.89
93 94 3.243737 TGTCAGAAGCGTGTCACAAGTAT 60.244 43.478 3.42 0.00 0.00 2.12
94 95 2.100087 TGTCAGAAGCGTGTCACAAGTA 59.900 45.455 3.42 0.00 0.00 2.24
95 96 1.134818 TGTCAGAAGCGTGTCACAAGT 60.135 47.619 3.42 0.00 0.00 3.16
96 97 1.524355 CTGTCAGAAGCGTGTCACAAG 59.476 52.381 3.42 0.00 0.00 3.16
97 98 1.570813 CTGTCAGAAGCGTGTCACAA 58.429 50.000 3.42 0.00 0.00 3.33
98 99 0.249447 CCTGTCAGAAGCGTGTCACA 60.249 55.000 0.00 0.00 0.00 3.58
99 100 1.560860 GCCTGTCAGAAGCGTGTCAC 61.561 60.000 0.00 0.00 0.00 3.67
100 101 1.300931 GCCTGTCAGAAGCGTGTCA 60.301 57.895 0.00 0.00 0.00 3.58
101 102 1.005630 AGCCTGTCAGAAGCGTGTC 60.006 57.895 0.00 0.00 0.00 3.67
102 103 1.005630 GAGCCTGTCAGAAGCGTGT 60.006 57.895 0.00 0.00 0.00 4.49
103 104 0.390866 ATGAGCCTGTCAGAAGCGTG 60.391 55.000 0.00 0.00 39.07 5.34
104 105 0.390866 CATGAGCCTGTCAGAAGCGT 60.391 55.000 0.00 0.00 39.07 5.07
105 106 1.088340 CCATGAGCCTGTCAGAAGCG 61.088 60.000 0.00 0.00 39.07 4.68
106 107 0.747283 CCCATGAGCCTGTCAGAAGC 60.747 60.000 0.00 0.00 39.07 3.86
107 108 0.617413 ACCCATGAGCCTGTCAGAAG 59.383 55.000 0.00 0.00 39.07 2.85
108 109 0.325933 CACCCATGAGCCTGTCAGAA 59.674 55.000 0.00 0.00 39.07 3.02
109 110 1.985614 CACCCATGAGCCTGTCAGA 59.014 57.895 0.00 0.00 39.07 3.27
110 111 1.748122 GCACCCATGAGCCTGTCAG 60.748 63.158 0.00 0.00 39.07 3.51
111 112 2.352422 GCACCCATGAGCCTGTCA 59.648 61.111 0.00 0.00 40.38 3.58
112 113 2.821366 CGCACCCATGAGCCTGTC 60.821 66.667 0.00 0.00 0.00 3.51
113 114 3.196207 AACGCACCCATGAGCCTGT 62.196 57.895 0.00 0.00 0.00 4.00
114 115 2.360350 AACGCACCCATGAGCCTG 60.360 61.111 0.00 0.00 0.00 4.85
115 116 2.360350 CAACGCACCCATGAGCCT 60.360 61.111 0.00 0.00 0.00 4.58
116 117 2.359850 TCAACGCACCCATGAGCC 60.360 61.111 0.00 0.00 0.00 4.70
117 118 1.639298 GAGTCAACGCACCCATGAGC 61.639 60.000 0.00 0.00 0.00 4.26
118 119 0.036952 AGAGTCAACGCACCCATGAG 60.037 55.000 0.00 0.00 0.00 2.90
119 120 1.204704 CTAGAGTCAACGCACCCATGA 59.795 52.381 0.00 0.00 0.00 3.07
120 121 1.645034 CTAGAGTCAACGCACCCATG 58.355 55.000 0.00 0.00 0.00 3.66
121 122 0.108138 GCTAGAGTCAACGCACCCAT 60.108 55.000 0.00 0.00 0.00 4.00
122 123 1.292223 GCTAGAGTCAACGCACCCA 59.708 57.895 0.00 0.00 0.00 4.51
123 124 1.448013 GGCTAGAGTCAACGCACCC 60.448 63.158 0.00 0.00 0.00 4.61
124 125 0.737715 CAGGCTAGAGTCAACGCACC 60.738 60.000 0.00 0.00 0.00 5.01
125 126 1.355066 GCAGGCTAGAGTCAACGCAC 61.355 60.000 0.00 0.00 0.00 5.34
126 127 1.079819 GCAGGCTAGAGTCAACGCA 60.080 57.895 0.00 0.00 0.00 5.24
127 128 1.080995 CAGCAGGCTAGAGTCAACGC 61.081 60.000 0.00 0.00 0.00 4.84
128 129 0.244994 ACAGCAGGCTAGAGTCAACG 59.755 55.000 0.00 0.00 0.00 4.10
129 130 1.001406 ACACAGCAGGCTAGAGTCAAC 59.999 52.381 0.00 0.00 0.00 3.18
130 131 1.342074 ACACAGCAGGCTAGAGTCAA 58.658 50.000 0.00 0.00 0.00 3.18
131 132 2.215942 TACACAGCAGGCTAGAGTCA 57.784 50.000 0.00 0.00 0.00 3.41
132 133 2.732597 CGTTACACAGCAGGCTAGAGTC 60.733 54.545 0.00 0.00 0.00 3.36
133 134 1.202582 CGTTACACAGCAGGCTAGAGT 59.797 52.381 0.00 0.00 0.00 3.24
134 135 1.472878 TCGTTACACAGCAGGCTAGAG 59.527 52.381 0.00 0.00 0.00 2.43
135 136 1.541379 TCGTTACACAGCAGGCTAGA 58.459 50.000 0.00 0.00 0.00 2.43
136 137 2.586258 ATCGTTACACAGCAGGCTAG 57.414 50.000 0.00 0.00 0.00 3.42
137 138 3.446161 AGTTATCGTTACACAGCAGGCTA 59.554 43.478 0.00 0.00 0.00 3.93
138 139 2.233922 AGTTATCGTTACACAGCAGGCT 59.766 45.455 0.00 0.00 0.00 4.58
139 140 2.348666 CAGTTATCGTTACACAGCAGGC 59.651 50.000 0.00 0.00 0.00 4.85
140 141 2.348666 GCAGTTATCGTTACACAGCAGG 59.651 50.000 0.00 0.00 0.00 4.85
141 142 2.993220 TGCAGTTATCGTTACACAGCAG 59.007 45.455 0.00 0.00 0.00 4.24
142 143 3.033368 TGCAGTTATCGTTACACAGCA 57.967 42.857 0.00 0.00 0.00 4.41
143 144 3.785505 GCATGCAGTTATCGTTACACAGC 60.786 47.826 14.21 0.00 0.00 4.40
144 145 3.542097 CGCATGCAGTTATCGTTACACAG 60.542 47.826 19.57 0.00 0.00 3.66
145 146 2.347150 CGCATGCAGTTATCGTTACACA 59.653 45.455 19.57 0.00 0.00 3.72
146 147 2.845764 GCGCATGCAGTTATCGTTACAC 60.846 50.000 19.57 0.00 42.15 2.90
147 148 1.326245 GCGCATGCAGTTATCGTTACA 59.674 47.619 19.57 0.00 42.15 2.41
148 149 1.332904 GGCGCATGCAGTTATCGTTAC 60.333 52.381 19.57 0.00 45.35 2.50
149 150 0.934496 GGCGCATGCAGTTATCGTTA 59.066 50.000 19.57 0.00 45.35 3.18
150 151 1.024046 TGGCGCATGCAGTTATCGTT 61.024 50.000 19.57 0.00 45.35 3.85
151 152 1.024046 TTGGCGCATGCAGTTATCGT 61.024 50.000 19.57 0.00 45.35 3.73
152 153 0.098552 TTTGGCGCATGCAGTTATCG 59.901 50.000 19.57 0.00 45.35 2.92
153 154 2.497107 ATTTGGCGCATGCAGTTATC 57.503 45.000 19.57 0.44 45.35 1.75
154 155 2.965572 AATTTGGCGCATGCAGTTAT 57.034 40.000 19.57 0.96 45.35 1.89
155 156 2.098934 CCTAATTTGGCGCATGCAGTTA 59.901 45.455 19.57 4.65 45.35 2.24
156 157 1.135024 CCTAATTTGGCGCATGCAGTT 60.135 47.619 19.57 3.62 45.35 3.16
157 158 0.457035 CCTAATTTGGCGCATGCAGT 59.543 50.000 19.57 0.00 45.35 4.40
158 159 0.740149 TCCTAATTTGGCGCATGCAG 59.260 50.000 19.57 11.69 45.35 4.41
159 160 1.135141 GTTCCTAATTTGGCGCATGCA 60.135 47.619 19.57 0.00 45.35 3.96
160 161 1.559831 GTTCCTAATTTGGCGCATGC 58.440 50.000 10.83 7.91 41.71 4.06
161 162 1.476085 TGGTTCCTAATTTGGCGCATG 59.524 47.619 10.83 0.00 0.00 4.06
162 163 1.750778 CTGGTTCCTAATTTGGCGCAT 59.249 47.619 10.83 0.00 0.00 4.73
163 164 1.173043 CTGGTTCCTAATTTGGCGCA 58.827 50.000 10.83 0.00 0.00 6.09
164 165 1.132453 GACTGGTTCCTAATTTGGCGC 59.868 52.381 0.00 0.00 0.00 6.53
165 166 1.743394 GGACTGGTTCCTAATTTGGCG 59.257 52.381 0.45 0.00 41.95 5.69
175 176 1.002011 GGCTTGGAGGACTGGTTCC 60.002 63.158 0.00 0.00 46.33 3.62
176 177 1.002011 GGGCTTGGAGGACTGGTTC 60.002 63.158 0.00 0.00 0.00 3.62
177 178 1.774217 TGGGCTTGGAGGACTGGTT 60.774 57.895 0.00 0.00 0.00 3.67
178 179 2.121963 TGGGCTTGGAGGACTGGT 60.122 61.111 0.00 0.00 0.00 4.00
179 180 1.920325 TCTGGGCTTGGAGGACTGG 60.920 63.158 0.00 0.00 0.00 4.00
180 181 1.298014 GTCTGGGCTTGGAGGACTG 59.702 63.158 0.00 0.00 0.00 3.51
181 182 1.920835 GGTCTGGGCTTGGAGGACT 60.921 63.158 0.00 0.00 0.00 3.85
182 183 1.779061 TTGGTCTGGGCTTGGAGGAC 61.779 60.000 0.00 0.00 0.00 3.85
183 184 1.065410 TTTGGTCTGGGCTTGGAGGA 61.065 55.000 0.00 0.00 0.00 3.71
184 185 0.610232 CTTTGGTCTGGGCTTGGAGG 60.610 60.000 0.00 0.00 0.00 4.30
185 186 0.401738 TCTTTGGTCTGGGCTTGGAG 59.598 55.000 0.00 0.00 0.00 3.86
186 187 0.850100 TTCTTTGGTCTGGGCTTGGA 59.150 50.000 0.00 0.00 0.00 3.53
187 188 1.251251 CTTCTTTGGTCTGGGCTTGG 58.749 55.000 0.00 0.00 0.00 3.61
188 189 1.251251 CCTTCTTTGGTCTGGGCTTG 58.749 55.000 0.00 0.00 0.00 4.01
189 190 0.113190 CCCTTCTTTGGTCTGGGCTT 59.887 55.000 0.00 0.00 0.00 4.35
190 191 0.772124 TCCCTTCTTTGGTCTGGGCT 60.772 55.000 0.00 0.00 37.83 5.19
191 192 0.322906 CTCCCTTCTTTGGTCTGGGC 60.323 60.000 0.00 0.00 37.83 5.36
192 193 0.329596 CCTCCCTTCTTTGGTCTGGG 59.670 60.000 0.00 0.00 39.22 4.45
193 194 1.362224 TCCTCCCTTCTTTGGTCTGG 58.638 55.000 0.00 0.00 0.00 3.86
194 195 3.149981 GTTTCCTCCCTTCTTTGGTCTG 58.850 50.000 0.00 0.00 0.00 3.51
195 196 2.108425 GGTTTCCTCCCTTCTTTGGTCT 59.892 50.000 0.00 0.00 0.00 3.85
196 197 2.515854 GGTTTCCTCCCTTCTTTGGTC 58.484 52.381 0.00 0.00 0.00 4.02
197 198 1.147191 GGGTTTCCTCCCTTCTTTGGT 59.853 52.381 0.00 0.00 43.85 3.67
198 199 1.550179 GGGGTTTCCTCCCTTCTTTGG 60.550 57.143 1.72 0.00 46.27 3.28
199 200 1.924731 GGGGTTTCCTCCCTTCTTTG 58.075 55.000 1.72 0.00 46.27 2.77
206 207 0.481128 TTTCACAGGGGTTTCCTCCC 59.519 55.000 0.00 0.00 46.12 4.30
207 208 2.562738 CAATTTCACAGGGGTTTCCTCC 59.437 50.000 0.00 0.00 46.12 4.30
208 209 3.255888 GTCAATTTCACAGGGGTTTCCTC 59.744 47.826 0.00 0.00 46.12 3.71
210 211 2.299013 GGTCAATTTCACAGGGGTTTCC 59.701 50.000 0.00 0.00 0.00 3.13
211 212 2.299013 GGGTCAATTTCACAGGGGTTTC 59.701 50.000 0.00 0.00 0.00 2.78
212 213 2.090775 AGGGTCAATTTCACAGGGGTTT 60.091 45.455 0.00 0.00 0.00 3.27
213 214 1.503347 AGGGTCAATTTCACAGGGGTT 59.497 47.619 0.00 0.00 0.00 4.11
214 215 1.158007 AGGGTCAATTTCACAGGGGT 58.842 50.000 0.00 0.00 0.00 4.95
215 216 1.203050 ACAGGGTCAATTTCACAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
216 217 2.162681 GACAGGGTCAATTTCACAGGG 58.837 52.381 0.00 0.00 32.09 4.45
217 218 2.162681 GGACAGGGTCAATTTCACAGG 58.837 52.381 0.00 0.00 33.68 4.00
218 219 2.162681 GGGACAGGGTCAATTTCACAG 58.837 52.381 0.00 0.00 33.68 3.66
219 220 1.496857 TGGGACAGGGTCAATTTCACA 59.503 47.619 0.00 0.00 33.68 3.58
220 221 2.286365 TGGGACAGGGTCAATTTCAC 57.714 50.000 0.00 0.00 33.68 3.18
233 234 4.453480 AGAGAAGAACCAAAATGGGACA 57.547 40.909 0.87 0.00 43.37 4.02
234 235 5.561679 ACTAGAGAAGAACCAAAATGGGAC 58.438 41.667 0.00 0.00 43.37 4.46
235 236 5.280521 GGACTAGAGAAGAACCAAAATGGGA 60.281 44.000 0.00 0.00 43.37 4.37
236 237 4.944317 GGACTAGAGAAGAACCAAAATGGG 59.056 45.833 0.00 0.00 43.37 4.00
237 238 5.810095 AGGACTAGAGAAGAACCAAAATGG 58.190 41.667 0.00 0.00 45.02 3.16
238 239 6.467677 TGAGGACTAGAGAAGAACCAAAATG 58.532 40.000 0.00 0.00 0.00 2.32
239 240 6.688073 TGAGGACTAGAGAAGAACCAAAAT 57.312 37.500 0.00 0.00 0.00 1.82
240 241 6.688073 ATGAGGACTAGAGAAGAACCAAAA 57.312 37.500 0.00 0.00 0.00 2.44
241 242 7.979786 ATATGAGGACTAGAGAAGAACCAAA 57.020 36.000 0.00 0.00 0.00 3.28
255 256 9.516546 TTCGTAGTGTCAATATATATGAGGACT 57.483 33.333 16.85 10.89 0.00 3.85
265 266 9.570468 AGGTAGAGATTTCGTAGTGTCAATATA 57.430 33.333 0.00 0.00 0.00 0.86
269 270 5.475909 ACAGGTAGAGATTTCGTAGTGTCAA 59.524 40.000 0.00 0.00 0.00 3.18
279 280 7.550551 TCATTGTGAATGACAGGTAGAGATTTC 59.449 37.037 0.00 0.00 42.69 2.17
480 904 4.343231 TCCGTAGTGGTGTTTGATAGGTA 58.657 43.478 0.00 0.00 39.52 3.08
508 932 0.107214 TCCTTAGGATTGCTTGGCCG 60.107 55.000 0.00 0.00 0.00 6.13
535 959 1.661341 AGGTTGCTTGATCATCTCGC 58.339 50.000 0.00 0.00 0.00 5.03
537 961 4.775236 AGGTAAGGTTGCTTGATCATCTC 58.225 43.478 0.00 0.00 0.00 2.75
546 970 4.599041 TGATGCATAAGGTAAGGTTGCTT 58.401 39.130 0.00 0.00 34.47 3.91
547 971 4.202441 CTGATGCATAAGGTAAGGTTGCT 58.798 43.478 2.67 0.00 34.47 3.91
548 972 3.316308 CCTGATGCATAAGGTAAGGTTGC 59.684 47.826 20.99 0.00 0.00 4.17
549 973 4.780815 TCCTGATGCATAAGGTAAGGTTG 58.219 43.478 26.79 2.00 34.94 3.77
550 974 5.440610 CTTCCTGATGCATAAGGTAAGGTT 58.559 41.667 26.79 0.00 34.94 3.50
551 975 4.687219 GCTTCCTGATGCATAAGGTAAGGT 60.687 45.833 26.79 0.00 34.94 3.50
552 976 3.817647 GCTTCCTGATGCATAAGGTAAGG 59.182 47.826 26.79 12.34 34.94 2.69
553 977 4.454678 TGCTTCCTGATGCATAAGGTAAG 58.545 43.478 26.79 25.39 36.70 2.34
554 978 4.454678 CTGCTTCCTGATGCATAAGGTAA 58.545 43.478 26.79 18.47 40.09 2.85
555 979 3.745480 GCTGCTTCCTGATGCATAAGGTA 60.745 47.826 26.79 18.15 40.09 3.08
556 980 2.928334 CTGCTTCCTGATGCATAAGGT 58.072 47.619 26.79 0.00 40.09 3.50
557 981 1.607628 GCTGCTTCCTGATGCATAAGG 59.392 52.381 22.99 22.99 40.09 2.69
558 982 1.263484 CGCTGCTTCCTGATGCATAAG 59.737 52.381 3.76 3.76 40.09 1.73
559 983 1.302366 CGCTGCTTCCTGATGCATAA 58.698 50.000 0.00 0.00 40.09 1.90
560 984 0.178767 ACGCTGCTTCCTGATGCATA 59.821 50.000 0.00 0.00 40.09 3.14
561 985 0.178767 TACGCTGCTTCCTGATGCAT 59.821 50.000 0.00 0.00 40.09 3.96
562 986 0.036483 TTACGCTGCTTCCTGATGCA 60.036 50.000 7.40 7.40 38.85 3.96
563 987 0.375106 GTTACGCTGCTTCCTGATGC 59.625 55.000 0.00 0.00 0.00 3.91
564 988 2.015736 AGTTACGCTGCTTCCTGATG 57.984 50.000 0.00 0.00 0.00 3.07
565 989 2.028112 TCAAGTTACGCTGCTTCCTGAT 60.028 45.455 0.00 0.00 0.00 2.90
566 990 1.343142 TCAAGTTACGCTGCTTCCTGA 59.657 47.619 0.00 0.00 0.00 3.86
567 991 1.795768 TCAAGTTACGCTGCTTCCTG 58.204 50.000 0.00 0.00 0.00 3.86
568 992 2.143925 GTTCAAGTTACGCTGCTTCCT 58.856 47.619 0.00 0.00 0.00 3.36
579 1003 9.868277 AAGATTTTGTGTTTGATGTTCAAGTTA 57.132 25.926 0.00 0.00 37.70 2.24
587 1011 6.512091 GCAATGCAAGATTTTGTGTTTGATGT 60.512 34.615 0.00 0.00 36.65 3.06
592 1016 4.118410 TCGCAATGCAAGATTTTGTGTTT 58.882 34.783 5.91 0.00 36.65 2.83
619 1043 3.248602 GCGGTACATTCTGGATTTGCTAG 59.751 47.826 0.00 0.00 0.00 3.42
659 1087 8.872134 GGAGGGAGTAGCTTATAATTTAAGAGT 58.128 37.037 0.00 2.23 0.00 3.24
727 1155 8.111836 CGTAATATAAGACGTTTTTGCAAGCTA 58.888 33.333 0.00 0.00 34.39 3.32
785 1213 6.015603 GGCCTTCCGTGTCTAGTTTACTATAT 60.016 42.308 0.00 0.00 0.00 0.86
800 1228 0.535102 ACACAAAGAGGCCTTCCGTG 60.535 55.000 6.77 14.87 39.59 4.94
803 1231 3.956744 AGAATACACAAAGAGGCCTTCC 58.043 45.455 6.77 0.00 0.00 3.46
816 1244 9.609950 CCGCTTAAACTAGATACTAGAATACAC 57.390 37.037 11.94 0.00 0.00 2.90
822 1250 7.441760 CAGTCTCCGCTTAAACTAGATACTAGA 59.558 40.741 11.94 0.00 0.00 2.43
823 1251 7.577979 CAGTCTCCGCTTAAACTAGATACTAG 58.422 42.308 0.00 0.00 0.00 2.57
824 1252 6.017275 GCAGTCTCCGCTTAAACTAGATACTA 60.017 42.308 0.00 0.00 0.00 1.82
825 1253 5.221087 GCAGTCTCCGCTTAAACTAGATACT 60.221 44.000 0.00 0.00 0.00 2.12
826 1254 4.977347 GCAGTCTCCGCTTAAACTAGATAC 59.023 45.833 0.00 0.00 0.00 2.24
827 1255 4.643334 TGCAGTCTCCGCTTAAACTAGATA 59.357 41.667 0.00 0.00 0.00 1.98
828 1256 3.447586 TGCAGTCTCCGCTTAAACTAGAT 59.552 43.478 0.00 0.00 0.00 1.98
915 1352 5.071384 TCCGTCCTTTTATTATCTTCTCCCC 59.929 44.000 0.00 0.00 0.00 4.81
926 1363 2.027469 AGTCGCCTTCCGTCCTTTTATT 60.027 45.455 0.00 0.00 38.35 1.40
931 1368 2.647158 GGAGTCGCCTTCCGTCCTT 61.647 63.158 0.00 0.00 38.35 3.36
933 1370 4.144703 GGGAGTCGCCTTCCGTCC 62.145 72.222 0.00 0.00 38.35 4.79
934 1371 3.379445 TGGGAGTCGCCTTCCGTC 61.379 66.667 4.54 0.00 39.55 4.79
936 1373 4.452733 GGTGGGAGTCGCCTTCCG 62.453 72.222 4.54 0.00 39.55 4.30
969 1406 4.153957 GAGGGAGGAGCCTTCCAA 57.846 61.111 16.22 0.00 46.64 3.53
972 1409 1.306568 ACTGGAGGGAGGAGCCTTC 60.307 63.158 0.00 0.00 41.86 3.46
973 1410 1.614824 CACTGGAGGGAGGAGCCTT 60.615 63.158 0.00 0.00 36.66 4.35
974 1411 2.040278 CACTGGAGGGAGGAGCCT 59.960 66.667 0.00 0.00 36.66 4.58
976 1413 3.627690 CTCACTGGAGGGAGGAGC 58.372 66.667 0.00 0.00 37.51 4.70
984 1421 0.679002 CCATTGGCACCTCACTGGAG 60.679 60.000 0.00 0.00 39.08 3.86
985 1422 1.379916 CCATTGGCACCTCACTGGA 59.620 57.895 0.00 0.00 39.08 3.86
986 1423 1.679977 CCCATTGGCACCTCACTGG 60.680 63.158 0.00 0.00 42.93 4.00
987 1424 4.007457 CCCATTGGCACCTCACTG 57.993 61.111 0.00 0.00 0.00 3.66
1032 1532 1.961793 TCTCGAGTTTGGTTTGGTGG 58.038 50.000 13.13 0.00 0.00 4.61
1040 1540 4.571984 TCATACAATGCATCTCGAGTTTGG 59.428 41.667 13.13 1.84 0.00 3.28
1063 1563 3.334881 AGGAAGGAACCTCAACCAATGAT 59.665 43.478 11.69 0.00 37.44 2.45
1064 1564 2.716424 AGGAAGGAACCTCAACCAATGA 59.284 45.455 11.69 0.00 34.98 2.57
1065 1565 3.160679 AGGAAGGAACCTCAACCAATG 57.839 47.619 11.69 0.00 34.98 2.82
1086 1586 2.764572 AGTAATTCCGAACGGATGGAGT 59.235 45.455 16.57 4.39 44.74 3.85
1088 1588 3.055675 ACAAGTAATTCCGAACGGATGGA 60.056 43.478 16.57 2.72 44.74 3.41
1089 1589 3.267483 ACAAGTAATTCCGAACGGATGG 58.733 45.455 16.57 2.01 44.74 3.51
1091 1591 3.184541 CGACAAGTAATTCCGAACGGAT 58.815 45.455 16.57 5.74 44.74 4.18
1092 1592 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1093 1593 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1094 1594 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
1095 1595 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
1096 1596 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
1097 1597 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
1098 1598 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
1099 1599 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
1100 1600 4.786575 GTCCATTTTCGCGACAAGTAATTC 59.213 41.667 9.15 0.00 0.00 2.17
1101 1601 4.668177 CGTCCATTTTCGCGACAAGTAATT 60.668 41.667 9.15 0.00 0.00 1.40
1102 1602 3.181524 CGTCCATTTTCGCGACAAGTAAT 60.182 43.478 9.15 0.88 0.00 1.89
1103 1603 2.156117 CGTCCATTTTCGCGACAAGTAA 59.844 45.455 9.15 0.00 0.00 2.24
1104 1604 1.722464 CGTCCATTTTCGCGACAAGTA 59.278 47.619 9.15 0.00 0.00 2.24
1105 1605 0.511221 CGTCCATTTTCGCGACAAGT 59.489 50.000 9.15 0.42 0.00 3.16
1106 1606 0.511221 ACGTCCATTTTCGCGACAAG 59.489 50.000 9.15 2.84 0.00 3.16
1107 1607 0.509499 GACGTCCATTTTCGCGACAA 59.491 50.000 9.15 9.93 0.00 3.18
1108 1608 1.286354 GGACGTCCATTTTCGCGACA 61.286 55.000 29.75 0.00 35.64 4.35
1109 1609 1.286354 TGGACGTCCATTTTCGCGAC 61.286 55.000 33.23 3.01 42.01 5.19
1110 1610 0.600518 TTGGACGTCCATTTTCGCGA 60.601 50.000 36.52 17.43 46.97 5.87
1111 1611 0.446222 ATTGGACGTCCATTTTCGCG 59.554 50.000 36.52 0.00 46.97 5.87
1112 1612 1.202143 GGATTGGACGTCCATTTTCGC 60.202 52.381 36.52 19.90 46.97 4.70
1113 1613 2.095853 CAGGATTGGACGTCCATTTTCG 59.904 50.000 36.52 21.19 46.97 3.46
1114 1614 3.343617 TCAGGATTGGACGTCCATTTTC 58.656 45.455 36.52 29.09 46.97 2.29
1115 1615 3.009033 TCTCAGGATTGGACGTCCATTTT 59.991 43.478 36.52 23.95 46.97 1.82
1116 1616 2.571653 TCTCAGGATTGGACGTCCATTT 59.428 45.455 36.52 26.45 46.97 2.32
1117 1617 2.093447 GTCTCAGGATTGGACGTCCATT 60.093 50.000 36.52 31.72 46.97 3.16
1118 1618 1.482593 GTCTCAGGATTGGACGTCCAT 59.517 52.381 36.52 25.36 46.97 3.41
1119 1619 0.895530 GTCTCAGGATTGGACGTCCA 59.104 55.000 33.23 33.23 45.94 4.02
1120 1620 0.175989 GGTCTCAGGATTGGACGTCC 59.824 60.000 28.17 28.17 35.94 4.79
1121 1621 1.187087 AGGTCTCAGGATTGGACGTC 58.813 55.000 7.13 7.13 0.00 4.34
1122 1622 1.645710 AAGGTCTCAGGATTGGACGT 58.354 50.000 0.00 0.00 0.00 4.34
1123 1623 2.770164 AAAGGTCTCAGGATTGGACG 57.230 50.000 0.00 0.00 0.00 4.79
1124 1624 4.145052 ACAAAAAGGTCTCAGGATTGGAC 58.855 43.478 0.00 0.00 0.00 4.02
1232 1764 2.588034 GTATCTTGGGCCCGTCGC 60.588 66.667 19.37 0.73 0.00 5.19
1389 1930 3.003173 TCCCAGAGGCGGTTGAGG 61.003 66.667 0.00 0.00 0.00 3.86
1515 2056 0.251634 TGAATGGCAGATGCGTACCA 59.748 50.000 0.00 0.00 43.26 3.25
1533 2129 3.189080 TGAAGTCAACGATGGAGCATTTG 59.811 43.478 0.00 0.00 0.00 2.32
1542 2138 3.302434 GCATGCAATTGAAGTCAACGATG 59.698 43.478 14.21 0.00 38.86 3.84
1553 5366 1.407618 GCAGATCCAGCATGCAATTGA 59.592 47.619 21.98 10.54 39.75 2.57
1554 5367 1.852942 GCAGATCCAGCATGCAATTG 58.147 50.000 21.98 9.58 39.75 2.32
1555 5368 0.384309 CGCAGATCCAGCATGCAATT 59.616 50.000 21.98 0.78 39.97 2.32
1556 5369 1.452953 CCGCAGATCCAGCATGCAAT 61.453 55.000 21.98 10.24 39.97 3.56
1559 5372 3.962421 GCCGCAGATCCAGCATGC 61.962 66.667 10.51 10.51 36.60 4.06
1566 5379 1.227205 CAGACAGAGCCGCAGATCC 60.227 63.158 0.00 0.00 0.00 3.36
1610 6088 2.974148 CGTTCCTGCAGCACAGCA 60.974 61.111 8.66 0.02 45.78 4.41
1611 6089 3.730761 CCGTTCCTGCAGCACAGC 61.731 66.667 8.66 0.00 45.78 4.40
1612 6090 2.281070 ACCGTTCCTGCAGCACAG 60.281 61.111 8.66 1.98 46.77 3.66
1613 6091 2.591429 CACCGTTCCTGCAGCACA 60.591 61.111 8.66 0.00 0.00 4.57
1849 6327 0.926155 CGATGTTCTGCGTGGAGATG 59.074 55.000 0.00 0.00 0.00 2.90
2031 6509 4.467084 GGAAGCGTCGGGCCATGA 62.467 66.667 4.39 0.00 45.17 3.07
2063 6541 5.574830 CGACCAAAGTCAAACAAACATTCAA 59.425 36.000 0.00 0.00 43.73 2.69
2097 6589 3.388308 CAAGGTCAGACAGACTCAACAG 58.612 50.000 2.17 0.00 46.72 3.16
2106 6598 3.372206 CCGAATTAAGCAAGGTCAGACAG 59.628 47.826 2.17 0.00 0.00 3.51
2107 6599 3.007506 TCCGAATTAAGCAAGGTCAGACA 59.992 43.478 2.17 0.00 0.00 3.41
2108 6600 3.371285 GTCCGAATTAAGCAAGGTCAGAC 59.629 47.826 0.00 0.00 0.00 3.51
2110 6602 3.334691 TGTCCGAATTAAGCAAGGTCAG 58.665 45.455 0.00 0.00 0.00 3.51
2111 6603 3.410631 TGTCCGAATTAAGCAAGGTCA 57.589 42.857 0.00 0.00 0.00 4.02
2197 6696 8.892723 CACCAAAAGTACATTTATGCTATCTCA 58.107 33.333 0.00 0.00 0.00 3.27
2198 6697 8.893727 ACACCAAAAGTACATTTATGCTATCTC 58.106 33.333 0.00 0.00 0.00 2.75
2199 6698 8.677300 CACACCAAAAGTACATTTATGCTATCT 58.323 33.333 0.00 0.00 0.00 1.98
2200 6699 8.458843 ACACACCAAAAGTACATTTATGCTATC 58.541 33.333 0.00 0.00 0.00 2.08
2201 6700 8.348285 ACACACCAAAAGTACATTTATGCTAT 57.652 30.769 0.00 0.00 0.00 2.97
2202 6701 7.663905 AGACACACCAAAAGTACATTTATGCTA 59.336 33.333 0.00 0.00 0.00 3.49
2203 6702 6.490040 AGACACACCAAAAGTACATTTATGCT 59.510 34.615 0.00 0.00 0.00 3.79
2204 6703 6.677913 AGACACACCAAAAGTACATTTATGC 58.322 36.000 0.00 0.00 0.00 3.14
2205 6704 7.015289 CGAGACACACCAAAAGTACATTTATG 58.985 38.462 0.00 0.83 0.00 1.90
2206 6705 6.708949 ACGAGACACACCAAAAGTACATTTAT 59.291 34.615 0.00 0.00 0.00 1.40
2207 6706 6.050432 ACGAGACACACCAAAAGTACATTTA 58.950 36.000 0.00 0.00 0.00 1.40
2208 6707 4.879545 ACGAGACACACCAAAAGTACATTT 59.120 37.500 0.00 0.00 0.00 2.32
2209 6708 4.448210 ACGAGACACACCAAAAGTACATT 58.552 39.130 0.00 0.00 0.00 2.71
2210 6709 4.067972 ACGAGACACACCAAAAGTACAT 57.932 40.909 0.00 0.00 0.00 2.29
2211 6710 3.530265 ACGAGACACACCAAAAGTACA 57.470 42.857 0.00 0.00 0.00 2.90
2212 6711 4.678742 GTCTACGAGACACACCAAAAGTAC 59.321 45.833 9.30 0.00 44.45 2.73
2213 6712 4.863491 GTCTACGAGACACACCAAAAGTA 58.137 43.478 9.30 0.00 44.45 2.24
2214 6713 3.714391 GTCTACGAGACACACCAAAAGT 58.286 45.455 9.30 0.00 44.45 2.66
2225 6724 1.003331 CGCTCCATCAGTCTACGAGAC 60.003 57.143 6.85 6.85 45.38 3.36
2226 6725 1.134491 TCGCTCCATCAGTCTACGAGA 60.134 52.381 0.00 0.00 0.00 4.04
2227 6726 1.262950 CTCGCTCCATCAGTCTACGAG 59.737 57.143 0.00 0.00 39.44 4.18
2228 6727 1.134491 TCTCGCTCCATCAGTCTACGA 60.134 52.381 0.00 0.00 0.00 3.43
2229 6728 1.262950 CTCTCGCTCCATCAGTCTACG 59.737 57.143 0.00 0.00 0.00 3.51
2230 6729 2.548057 CTCTCTCGCTCCATCAGTCTAC 59.452 54.545 0.00 0.00 0.00 2.59
2231 6730 2.486370 CCTCTCTCGCTCCATCAGTCTA 60.486 54.545 0.00 0.00 0.00 2.59
2232 6731 1.679139 CTCTCTCGCTCCATCAGTCT 58.321 55.000 0.00 0.00 0.00 3.24
2233 6732 0.667993 CCTCTCTCGCTCCATCAGTC 59.332 60.000 0.00 0.00 0.00 3.51
2234 6733 0.257328 TCCTCTCTCGCTCCATCAGT 59.743 55.000 0.00 0.00 0.00 3.41
2235 6734 1.619654 ATCCTCTCTCGCTCCATCAG 58.380 55.000 0.00 0.00 0.00 2.90
2236 6735 2.079170 AATCCTCTCTCGCTCCATCA 57.921 50.000 0.00 0.00 0.00 3.07
2237 6736 3.069443 AGAAAATCCTCTCTCGCTCCATC 59.931 47.826 0.00 0.00 0.00 3.51
2238 6737 3.037549 AGAAAATCCTCTCTCGCTCCAT 58.962 45.455 0.00 0.00 0.00 3.41
2239 6738 2.461695 AGAAAATCCTCTCTCGCTCCA 58.538 47.619 0.00 0.00 0.00 3.86
2240 6739 3.552068 GCTAGAAAATCCTCTCTCGCTCC 60.552 52.174 0.00 0.00 30.01 4.70
2241 6740 3.317993 AGCTAGAAAATCCTCTCTCGCTC 59.682 47.826 0.00 0.00 36.31 5.03
2242 6741 3.295973 AGCTAGAAAATCCTCTCTCGCT 58.704 45.455 0.00 0.00 36.26 4.93
2243 6742 3.317993 AGAGCTAGAAAATCCTCTCTCGC 59.682 47.826 0.00 0.00 32.13 5.03
2244 6743 6.817765 ATAGAGCTAGAAAATCCTCTCTCG 57.182 41.667 0.00 0.00 36.23 4.04
2245 6744 7.888546 AGGTATAGAGCTAGAAAATCCTCTCTC 59.111 40.741 0.00 0.00 36.23 3.20
2246 6745 7.765622 AGGTATAGAGCTAGAAAATCCTCTCT 58.234 38.462 0.00 0.00 36.23 3.10
2247 6746 9.695155 ATAGGTATAGAGCTAGAAAATCCTCTC 57.305 37.037 2.42 0.00 38.99 3.20
2250 6749 9.398538 CGTATAGGTATAGAGCTAGAAAATCCT 57.601 37.037 2.42 0.00 38.99 3.24
2251 6750 8.623030 CCGTATAGGTATAGAGCTAGAAAATCC 58.377 40.741 2.42 0.00 38.99 3.01
2292 6791 9.403583 ACGGTGTCCATAAATAAATCAATTACT 57.596 29.630 0.00 0.00 0.00 2.24
2293 6792 9.445786 CACGGTGTCCATAAATAAATCAATTAC 57.554 33.333 0.00 0.00 0.00 1.89
2294 6793 9.179909 ACACGGTGTCCATAAATAAATCAATTA 57.820 29.630 8.21 0.00 0.00 1.40
2295 6794 7.973388 CACACGGTGTCCATAAATAAATCAATT 59.027 33.333 11.54 0.00 0.00 2.32
2296 6795 7.416213 CCACACGGTGTCCATAAATAAATCAAT 60.416 37.037 11.54 0.00 0.00 2.57
2297 6796 6.127869 CCACACGGTGTCCATAAATAAATCAA 60.128 38.462 11.54 0.00 0.00 2.57
2298 6797 5.355630 CCACACGGTGTCCATAAATAAATCA 59.644 40.000 11.54 0.00 0.00 2.57
2299 6798 5.355910 ACCACACGGTGTCCATAAATAAATC 59.644 40.000 11.54 0.00 46.79 2.17
2300 6799 5.258051 ACCACACGGTGTCCATAAATAAAT 58.742 37.500 11.54 0.00 46.79 1.40
2301 6800 4.653868 ACCACACGGTGTCCATAAATAAA 58.346 39.130 11.54 0.00 46.79 1.40
2302 6801 4.289238 ACCACACGGTGTCCATAAATAA 57.711 40.909 11.54 0.00 46.79 1.40
2303 6802 3.985019 ACCACACGGTGTCCATAAATA 57.015 42.857 11.54 0.00 46.79 1.40
2304 6803 2.871096 ACCACACGGTGTCCATAAAT 57.129 45.000 11.54 0.00 46.79 1.40
2315 6814 0.958382 CCACCCAATACACCACACGG 60.958 60.000 0.00 0.00 38.77 4.94
2316 6815 0.250553 ACCACCCAATACACCACACG 60.251 55.000 0.00 0.00 0.00 4.49
2317 6816 1.611491 CAACCACCCAATACACCACAC 59.389 52.381 0.00 0.00 0.00 3.82
2442 6941 2.112297 GGTCGTTTGGCCCAGACA 59.888 61.111 5.15 0.00 35.49 3.41
2764 7281 0.683973 ATGGATCCAGTCGCCATCTC 59.316 55.000 21.33 0.00 37.91 2.75
2805 7322 7.170828 GGGTAAATGAAAAGACACACAAATTCC 59.829 37.037 0.00 0.00 0.00 3.01
2822 7340 3.011119 GCGTATGTTGGTGGGTAAATGA 58.989 45.455 0.00 0.00 0.00 2.57
2828 7346 1.002624 CTGGCGTATGTTGGTGGGT 60.003 57.895 0.00 0.00 0.00 4.51
3029 7552 7.255590 GCAATAAGATAACATGGTGGCAACTAT 60.256 37.037 3.27 0.00 37.61 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.