Multiple sequence alignment - TraesCS4A01G414200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G414200 chr4A 100.000 4649 0 0 1 4649 684665025 684660377 0.000000e+00 8586.0
1 TraesCS4A01G414200 chr4A 93.269 104 6 1 2295 2398 684662640 684662538 8.060000e-33 152.0
2 TraesCS4A01G414200 chr4A 93.269 104 6 1 2386 2488 684662731 684662628 8.060000e-33 152.0
3 TraesCS4A01G414200 chr4B 91.321 3226 202 42 1445 4649 604206245 604203077 0.000000e+00 4335.0
4 TraesCS4A01G414200 chr4B 78.811 656 48 46 732 1357 604206956 604206362 1.590000e-94 357.0
5 TraesCS4A01G414200 chr4B 93.269 104 6 1 2386 2488 604205415 604205312 8.060000e-33 152.0
6 TraesCS4A01G414200 chr4B 95.556 45 2 0 4044 4088 647698148 647698192 6.450000e-09 73.1
7 TraesCS4A01G414200 chr4B 100.000 31 0 0 3010 3040 159632205 159632235 1.810000e-04 58.4
8 TraesCS4A01G414200 chr4D 91.344 1652 100 16 1445 3085 478038875 478037256 0.000000e+00 2218.0
9 TraesCS4A01G414200 chr4D 91.434 1576 81 21 3080 4649 478033876 478032349 0.000000e+00 2113.0
10 TraesCS4A01G414200 chr4D 79.536 689 50 44 705 1366 478039600 478038976 1.560000e-109 407.0
11 TraesCS4A01G414200 chr4D 83.544 237 33 4 272 508 478039949 478039719 2.820000e-52 217.0
12 TraesCS4A01G414200 chr4D 96.154 104 4 0 2295 2398 478037953 478037850 2.220000e-38 171.0
13 TraesCS4A01G414200 chr4D 81.443 97 14 4 4197 4289 503174946 503175042 4.990000e-10 76.8
14 TraesCS4A01G414200 chr7D 89.441 1288 99 23 1357 2636 96442472 96441214 0.000000e+00 1591.0
15 TraesCS4A01G414200 chr7D 90.824 850 65 9 1553 2398 96351756 96350916 0.000000e+00 1125.0
16 TraesCS4A01G414200 chr7D 94.643 224 11 1 2386 2608 96351019 96350796 3.440000e-91 346.0
17 TraesCS4A01G414200 chr7D 95.192 104 5 0 2295 2398 96441465 96441362 1.030000e-36 165.0
18 TraesCS4A01G414200 chr7D 92.661 109 7 1 2386 2493 96441556 96441448 6.230000e-34 156.0
19 TraesCS4A01G414200 chr2D 93.531 943 49 8 1676 2613 635129471 635130406 0.000000e+00 1393.0
20 TraesCS4A01G414200 chr2D 97.041 169 5 0 2609 2777 635135233 635135401 7.610000e-73 285.0
21 TraesCS4A01G414200 chr2D 96.154 104 4 0 2295 2398 635130178 635130281 2.220000e-38 171.0
22 TraesCS4A01G414200 chr2D 93.578 109 6 1 2386 2493 635130087 635130195 1.340000e-35 161.0
23 TraesCS4A01G414200 chr5A 88.109 698 52 14 1445 2134 179927832 179927158 0.000000e+00 800.0
24 TraesCS4A01G414200 chr1A 77.465 284 37 18 1562 1838 243865560 243865297 1.350000e-30 145.0
25 TraesCS4A01G414200 chr2B 93.333 45 3 0 4045 4089 197682735 197682779 3.000000e-07 67.6
26 TraesCS4A01G414200 chr2B 90.698 43 3 1 4041 4082 422234559 422234517 6.500000e-04 56.5
27 TraesCS4A01G414200 chr6A 78.947 95 15 3 4196 4285 37378622 37378716 5.020000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G414200 chr4A 684660377 684665025 4648 True 2963.333333 8586 95.512667 1 4649 3 chr4A.!!$R1 4648
1 TraesCS4A01G414200 chr4B 604203077 604206956 3879 True 1614.666667 4335 87.800333 732 4649 3 chr4B.!!$R1 3917
2 TraesCS4A01G414200 chr4D 478032349 478039949 7600 True 1025.200000 2218 88.402400 272 4649 5 chr4D.!!$R1 4377
3 TraesCS4A01G414200 chr7D 96350796 96351756 960 True 735.500000 1125 92.733500 1553 2608 2 chr7D.!!$R1 1055
4 TraesCS4A01G414200 chr7D 96441214 96442472 1258 True 637.333333 1591 92.431333 1357 2636 3 chr7D.!!$R2 1279
5 TraesCS4A01G414200 chr2D 635129471 635130406 935 False 575.000000 1393 94.421000 1676 2613 3 chr2D.!!$F2 937
6 TraesCS4A01G414200 chr5A 179927158 179927832 674 True 800.000000 800 88.109000 1445 2134 1 chr5A.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.033228 CCTCTAATGGCTGCGAGGAG 59.967 60.0 13.30 9.09 44.56 3.69 F
37 38 0.033228 CTCTAATGGCTGCGAGGAGG 59.967 60.0 0.00 0.00 0.00 4.30 F
175 176 0.035056 AAAGGCACGCAAGGAGCTAT 60.035 50.0 0.00 0.00 46.39 2.97 F
1540 1621 0.034476 TGGTTGACTGCTGCTCTCAG 59.966 55.0 0.00 0.00 43.16 3.35 F
1546 1627 0.249676 ACTGCTGCTCTCAGTGATGG 59.750 55.0 0.00 0.00 42.63 3.51 F
3078 6574 0.317479 AGACGGTCTGTACAAGCACC 59.683 55.0 10.41 2.67 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1500 0.109597 GCGTCAACATGCAAGGGAAG 60.110 55.000 0.00 0.00 34.29 3.46 R
1528 1609 0.535797 TCCATCACTGAGAGCAGCAG 59.464 55.000 0.00 0.00 46.26 4.24 R
2048 2140 1.004080 GAGTGCAGCAGCTTCTCCA 60.004 57.895 1.76 0.00 42.74 3.86 R
3062 3173 0.033504 ACAGGTGCTTGTACAGACCG 59.966 55.000 12.60 10.72 33.39 4.79 R
3398 6894 1.673923 CCTGATGAGTTCTGCGCTCAA 60.674 52.381 9.73 0.00 44.82 3.02 R
4403 7913 0.031585 CGTCAGTCTCCAAACGACCA 59.968 55.000 0.00 0.00 37.31 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.440127 CATTTGCCCCGCAGTGCC 62.440 66.667 10.11 0.00 40.61 5.01
23 24 3.399181 CCCCGCAGTGCCCTCTAA 61.399 66.667 10.11 0.00 0.00 2.10
24 25 2.746375 CCCCGCAGTGCCCTCTAAT 61.746 63.158 10.11 0.00 0.00 1.73
25 26 1.524621 CCCGCAGTGCCCTCTAATG 60.525 63.158 10.11 0.00 0.00 1.90
26 27 1.524621 CCGCAGTGCCCTCTAATGG 60.525 63.158 10.11 0.00 0.00 3.16
32 33 2.505982 GCCCTCTAATGGCTGCGA 59.494 61.111 0.00 0.00 45.70 5.10
33 34 1.596477 GCCCTCTAATGGCTGCGAG 60.596 63.158 0.00 0.00 45.70 5.03
34 35 1.070445 CCCTCTAATGGCTGCGAGG 59.930 63.158 12.03 12.03 42.09 4.63
35 36 1.402896 CCCTCTAATGGCTGCGAGGA 61.403 60.000 18.40 4.02 44.56 3.71
36 37 0.033228 CCTCTAATGGCTGCGAGGAG 59.967 60.000 13.30 9.09 44.56 3.69
37 38 0.033228 CTCTAATGGCTGCGAGGAGG 59.967 60.000 0.00 0.00 0.00 4.30
38 39 1.070445 CTAATGGCTGCGAGGAGGG 59.930 63.158 0.00 0.00 0.00 4.30
39 40 2.388890 CTAATGGCTGCGAGGAGGGG 62.389 65.000 0.00 0.00 0.00 4.79
68 69 3.737172 GCAACGGCAGCGGTGATT 61.737 61.111 20.69 6.07 40.72 2.57
69 70 2.953821 CAACGGCAGCGGTGATTT 59.046 55.556 20.69 4.31 0.00 2.17
70 71 1.442520 CAACGGCAGCGGTGATTTG 60.443 57.895 20.69 13.17 0.00 2.32
71 72 2.625823 AACGGCAGCGGTGATTTGG 61.626 57.895 20.69 4.09 0.00 3.28
72 73 3.814268 CGGCAGCGGTGATTTGGG 61.814 66.667 20.69 0.00 0.00 4.12
73 74 3.451894 GGCAGCGGTGATTTGGGG 61.452 66.667 20.69 0.00 0.00 4.96
74 75 2.676471 GCAGCGGTGATTTGGGGT 60.676 61.111 20.69 0.00 0.00 4.95
75 76 2.275380 GCAGCGGTGATTTGGGGTT 61.275 57.895 20.69 0.00 0.00 4.11
76 77 1.815817 GCAGCGGTGATTTGGGGTTT 61.816 55.000 20.69 0.00 0.00 3.27
77 78 0.243636 CAGCGGTGATTTGGGGTTTC 59.756 55.000 9.50 0.00 0.00 2.78
78 79 0.112412 AGCGGTGATTTGGGGTTTCT 59.888 50.000 0.00 0.00 0.00 2.52
79 80 0.526211 GCGGTGATTTGGGGTTTCTC 59.474 55.000 0.00 0.00 0.00 2.87
80 81 1.173913 CGGTGATTTGGGGTTTCTCC 58.826 55.000 0.00 0.00 0.00 3.71
101 102 4.090057 GCCGCTGCAAGGAACGAC 62.090 66.667 11.69 0.00 37.47 4.34
102 103 2.664851 CCGCTGCAAGGAACGACA 60.665 61.111 0.00 0.00 0.00 4.35
103 104 2.551270 CGCTGCAAGGAACGACAC 59.449 61.111 0.00 0.00 0.00 3.67
104 105 2.551270 GCTGCAAGGAACGACACG 59.449 61.111 0.00 0.00 0.00 4.49
105 106 1.954146 GCTGCAAGGAACGACACGA 60.954 57.895 0.00 0.00 0.00 4.35
106 107 1.495584 GCTGCAAGGAACGACACGAA 61.496 55.000 0.00 0.00 0.00 3.85
107 108 0.934496 CTGCAAGGAACGACACGAAA 59.066 50.000 0.00 0.00 0.00 3.46
108 109 1.329292 CTGCAAGGAACGACACGAAAA 59.671 47.619 0.00 0.00 0.00 2.29
109 110 1.944024 TGCAAGGAACGACACGAAAAT 59.056 42.857 0.00 0.00 0.00 1.82
110 111 2.286713 TGCAAGGAACGACACGAAAATG 60.287 45.455 0.00 0.00 0.00 2.32
111 112 2.032377 GCAAGGAACGACACGAAAATGA 60.032 45.455 0.00 0.00 0.00 2.57
112 113 3.541711 CAAGGAACGACACGAAAATGAC 58.458 45.455 0.00 0.00 0.00 3.06
113 114 2.140717 AGGAACGACACGAAAATGACC 58.859 47.619 0.00 0.00 0.00 4.02
114 115 1.196127 GGAACGACACGAAAATGACCC 59.804 52.381 0.00 0.00 0.00 4.46
115 116 1.868498 GAACGACACGAAAATGACCCA 59.132 47.619 0.00 0.00 0.00 4.51
116 117 2.178912 ACGACACGAAAATGACCCAT 57.821 45.000 0.00 0.00 0.00 4.00
117 118 1.804151 ACGACACGAAAATGACCCATG 59.196 47.619 0.00 0.00 0.00 3.66
118 119 2.073056 CGACACGAAAATGACCCATGA 58.927 47.619 0.00 0.00 0.00 3.07
119 120 2.482336 CGACACGAAAATGACCCATGAA 59.518 45.455 0.00 0.00 0.00 2.57
120 121 3.058570 CGACACGAAAATGACCCATGAAA 60.059 43.478 0.00 0.00 0.00 2.69
121 122 4.555708 CGACACGAAAATGACCCATGAAAA 60.556 41.667 0.00 0.00 0.00 2.29
122 123 4.616953 ACACGAAAATGACCCATGAAAAC 58.383 39.130 0.00 0.00 0.00 2.43
123 124 4.098654 ACACGAAAATGACCCATGAAAACA 59.901 37.500 0.00 0.00 0.00 2.83
124 125 5.046529 CACGAAAATGACCCATGAAAACAA 58.953 37.500 0.00 0.00 0.00 2.83
125 126 5.175491 CACGAAAATGACCCATGAAAACAAG 59.825 40.000 0.00 0.00 0.00 3.16
126 127 5.163457 ACGAAAATGACCCATGAAAACAAGT 60.163 36.000 0.00 0.00 0.00 3.16
127 128 6.039941 ACGAAAATGACCCATGAAAACAAGTA 59.960 34.615 0.00 0.00 0.00 2.24
128 129 7.090173 CGAAAATGACCCATGAAAACAAGTAT 58.910 34.615 0.00 0.00 0.00 2.12
129 130 8.240682 CGAAAATGACCCATGAAAACAAGTATA 58.759 33.333 0.00 0.00 0.00 1.47
130 131 9.921637 GAAAATGACCCATGAAAACAAGTATAA 57.078 29.630 0.00 0.00 0.00 0.98
133 134 9.874205 AATGACCCATGAAAACAAGTATAATTG 57.126 29.630 11.21 11.21 36.22 2.32
134 135 7.835822 TGACCCATGAAAACAAGTATAATTGG 58.164 34.615 16.58 0.00 34.36 3.16
135 136 7.093552 TGACCCATGAAAACAAGTATAATTGGG 60.094 37.037 16.58 8.95 44.52 4.12
136 137 6.957020 ACCCATGAAAACAAGTATAATTGGGA 59.043 34.615 16.58 0.00 42.15 4.37
137 138 7.093509 ACCCATGAAAACAAGTATAATTGGGAC 60.094 37.037 16.58 6.36 42.15 4.46
138 139 7.093552 CCCATGAAAACAAGTATAATTGGGACA 60.094 37.037 16.58 10.94 42.15 4.02
152 153 1.885887 TGGGACAAGTATGCAAAGTGC 59.114 47.619 0.00 0.00 39.03 4.40
153 154 2.162681 GGGACAAGTATGCAAAGTGCT 58.837 47.619 0.00 0.00 45.31 4.40
154 155 3.244735 TGGGACAAGTATGCAAAGTGCTA 60.245 43.478 0.00 0.00 39.28 3.49
155 156 3.756434 GGGACAAGTATGCAAAGTGCTAA 59.244 43.478 0.00 0.00 45.31 3.09
156 157 4.217550 GGGACAAGTATGCAAAGTGCTAAA 59.782 41.667 0.00 0.00 45.31 1.85
157 158 5.278758 GGGACAAGTATGCAAAGTGCTAAAA 60.279 40.000 0.00 0.00 45.31 1.52
158 159 6.212955 GGACAAGTATGCAAAGTGCTAAAAA 58.787 36.000 0.00 0.00 45.31 1.94
159 160 6.363357 GGACAAGTATGCAAAGTGCTAAAAAG 59.637 38.462 0.00 0.00 45.31 2.27
160 161 6.215845 ACAAGTATGCAAAGTGCTAAAAAGG 58.784 36.000 0.00 0.00 45.31 3.11
161 162 4.809673 AGTATGCAAAGTGCTAAAAAGGC 58.190 39.130 0.00 0.00 45.31 4.35
162 163 3.749665 ATGCAAAGTGCTAAAAAGGCA 57.250 38.095 0.00 0.00 45.31 4.75
169 170 0.313672 TGCTAAAAAGGCACGCAAGG 59.686 50.000 0.00 0.00 46.39 3.61
170 171 0.596082 GCTAAAAAGGCACGCAAGGA 59.404 50.000 0.00 0.00 46.39 3.36
171 172 1.401539 GCTAAAAAGGCACGCAAGGAG 60.402 52.381 0.00 0.00 46.39 3.69
172 173 0.596082 TAAAAAGGCACGCAAGGAGC 59.404 50.000 0.00 0.00 46.39 4.70
173 174 1.109323 AAAAAGGCACGCAAGGAGCT 61.109 50.000 0.00 0.00 46.39 4.09
174 175 0.250727 AAAAGGCACGCAAGGAGCTA 60.251 50.000 0.00 0.00 46.39 3.32
175 176 0.035056 AAAGGCACGCAAGGAGCTAT 60.035 50.000 0.00 0.00 46.39 2.97
176 177 0.462759 AAGGCACGCAAGGAGCTATC 60.463 55.000 0.00 0.00 46.39 2.08
187 188 1.685148 GGAGCTATCCTTGGGCTTTG 58.315 55.000 0.00 0.00 42.94 2.77
188 189 1.685148 GAGCTATCCTTGGGCTTTGG 58.315 55.000 0.00 0.00 36.37 3.28
189 190 1.212935 GAGCTATCCTTGGGCTTTGGA 59.787 52.381 0.00 0.00 36.37 3.53
190 191 1.855599 AGCTATCCTTGGGCTTTGGAT 59.144 47.619 9.70 9.70 42.55 3.41
191 192 2.158549 AGCTATCCTTGGGCTTTGGATC 60.159 50.000 8.46 0.00 40.62 3.36
192 193 2.498167 CTATCCTTGGGCTTTGGATCG 58.502 52.381 8.46 1.28 40.62 3.69
193 194 0.106519 ATCCTTGGGCTTTGGATCGG 60.107 55.000 0.00 0.00 35.90 4.18
194 195 2.418083 CCTTGGGCTTTGGATCGGC 61.418 63.158 0.00 0.00 0.00 5.54
195 196 2.749839 TTGGGCTTTGGATCGGCG 60.750 61.111 0.00 0.00 0.00 6.46
196 197 4.794648 TGGGCTTTGGATCGGCGG 62.795 66.667 7.21 0.00 0.00 6.13
197 198 4.483243 GGGCTTTGGATCGGCGGA 62.483 66.667 7.21 0.00 0.00 5.54
198 199 2.897350 GGCTTTGGATCGGCGGAG 60.897 66.667 7.21 0.00 0.00 4.63
199 200 2.897350 GCTTTGGATCGGCGGAGG 60.897 66.667 7.21 0.00 0.00 4.30
200 201 2.900273 CTTTGGATCGGCGGAGGA 59.100 61.111 7.21 0.00 0.00 3.71
201 202 1.227380 CTTTGGATCGGCGGAGGAG 60.227 63.158 7.21 0.00 0.00 3.69
202 203 3.385749 TTTGGATCGGCGGAGGAGC 62.386 63.158 7.21 0.00 0.00 4.70
220 221 4.592192 CGAGATGGCGGCGTGGAT 62.592 66.667 9.10 0.00 0.00 3.41
221 222 2.663188 GAGATGGCGGCGTGGATC 60.663 66.667 9.10 3.32 0.00 3.36
222 223 3.445518 GAGATGGCGGCGTGGATCA 62.446 63.158 9.10 0.00 0.00 2.92
223 224 2.513666 GATGGCGGCGTGGATCAA 60.514 61.111 9.10 0.00 0.00 2.57
224 225 2.823829 GATGGCGGCGTGGATCAAC 61.824 63.158 9.10 0.00 0.00 3.18
233 234 4.073052 TGGATCAACCACGGCAAC 57.927 55.556 0.00 0.00 44.64 4.17
234 235 1.602323 TGGATCAACCACGGCAACC 60.602 57.895 0.00 0.00 44.64 3.77
235 236 1.602323 GGATCAACCACGGCAACCA 60.602 57.895 0.00 0.00 38.79 3.67
236 237 1.175983 GGATCAACCACGGCAACCAA 61.176 55.000 0.00 0.00 38.79 3.67
237 238 0.240945 GATCAACCACGGCAACCAAG 59.759 55.000 0.00 0.00 0.00 3.61
238 239 0.179004 ATCAACCACGGCAACCAAGA 60.179 50.000 0.00 0.00 0.00 3.02
239 240 1.098712 TCAACCACGGCAACCAAGAC 61.099 55.000 0.00 0.00 0.00 3.01
240 241 2.184167 AACCACGGCAACCAAGACG 61.184 57.895 0.00 0.00 0.00 4.18
241 242 2.590575 CCACGGCAACCAAGACGT 60.591 61.111 0.00 0.00 40.60 4.34
243 244 2.502093 ACGGCAACCAAGACGTGA 59.498 55.556 0.00 0.00 38.24 4.35
244 245 1.885850 ACGGCAACCAAGACGTGAC 60.886 57.895 0.00 0.00 38.24 3.67
245 246 1.885388 CGGCAACCAAGACGTGACA 60.885 57.895 0.00 0.00 0.00 3.58
246 247 1.647084 GGCAACCAAGACGTGACAC 59.353 57.895 0.00 0.00 0.00 3.67
247 248 0.814010 GGCAACCAAGACGTGACACT 60.814 55.000 3.68 0.00 0.00 3.55
248 249 1.014352 GCAACCAAGACGTGACACTT 58.986 50.000 3.68 0.00 0.00 3.16
249 250 1.003866 GCAACCAAGACGTGACACTTC 60.004 52.381 3.95 3.95 0.00 3.01
250 251 2.550978 CAACCAAGACGTGACACTTCT 58.449 47.619 8.71 8.71 0.00 2.85
251 252 2.936498 CAACCAAGACGTGACACTTCTT 59.064 45.455 18.77 18.77 37.20 2.52
252 253 3.261981 ACCAAGACGTGACACTTCTTT 57.738 42.857 21.17 8.49 34.94 2.52
253 254 3.606687 ACCAAGACGTGACACTTCTTTT 58.393 40.909 21.17 10.96 34.94 2.27
254 255 4.007659 ACCAAGACGTGACACTTCTTTTT 58.992 39.130 21.17 10.66 34.94 1.94
285 286 5.258456 TGAACTTAGACGTGACACTTCTT 57.742 39.130 18.57 2.11 29.11 2.52
290 291 1.760613 AGACGTGACACTTCTTGGGAA 59.239 47.619 8.71 0.00 0.00 3.97
307 308 2.099427 GGGAAGCGTTGTTTGTTTGGTA 59.901 45.455 0.00 0.00 0.00 3.25
338 339 4.844420 GGGATCTTGCCGACAGAG 57.156 61.111 0.00 0.00 0.00 3.35
341 342 1.339151 GGGATCTTGCCGACAGAGTTT 60.339 52.381 0.00 0.00 0.00 2.66
343 344 2.160417 GGATCTTGCCGACAGAGTTTTG 59.840 50.000 0.00 0.00 0.00 2.44
347 348 3.442273 TCTTGCCGACAGAGTTTTGTTTT 59.558 39.130 0.00 0.00 0.00 2.43
348 349 3.859411 TGCCGACAGAGTTTTGTTTTT 57.141 38.095 0.00 0.00 0.00 1.94
349 350 3.765026 TGCCGACAGAGTTTTGTTTTTC 58.235 40.909 0.00 0.00 0.00 2.29
350 351 3.113322 GCCGACAGAGTTTTGTTTTTCC 58.887 45.455 0.00 0.00 0.00 3.13
351 352 3.428316 GCCGACAGAGTTTTGTTTTTCCA 60.428 43.478 0.00 0.00 0.00 3.53
352 353 4.102649 CCGACAGAGTTTTGTTTTTCCAC 58.897 43.478 0.00 0.00 0.00 4.02
355 356 5.455525 CGACAGAGTTTTGTTTTTCCACATC 59.544 40.000 0.00 0.00 0.00 3.06
379 380 3.654201 TGCGCCAAACAGCAGTAG 58.346 55.556 4.18 0.00 38.59 2.57
384 385 2.838736 CGCCAAACAGCAGTAGGATAT 58.161 47.619 5.04 0.00 0.00 1.63
395 396 2.802816 CAGTAGGATATTGCAACCTCGC 59.197 50.000 10.18 5.85 35.52 5.03
398 399 0.531974 GGATATTGCAACCTCGCGGA 60.532 55.000 6.13 0.00 33.35 5.54
400 401 1.261619 GATATTGCAACCTCGCGGAAG 59.738 52.381 6.13 0.00 33.35 3.46
425 426 0.928229 GAAAATCGGACGGATCCACG 59.072 55.000 13.41 13.02 46.67 4.94
426 427 0.533491 AAAATCGGACGGATCCACGA 59.467 50.000 20.84 20.84 46.67 4.35
434 435 3.800766 GGACGGATCCACGAAAAACTCG 61.801 54.545 13.41 0.00 45.47 4.18
492 493 1.511768 GCCGTACTCCACTCAGACC 59.488 63.158 0.00 0.00 0.00 3.85
495 496 1.473278 CCGTACTCCACTCAGACCTTC 59.527 57.143 0.00 0.00 0.00 3.46
497 498 2.820787 CGTACTCCACTCAGACCTTCTT 59.179 50.000 0.00 0.00 0.00 2.52
499 500 4.262079 CGTACTCCACTCAGACCTTCTTTT 60.262 45.833 0.00 0.00 0.00 2.27
500 501 4.779993 ACTCCACTCAGACCTTCTTTTT 57.220 40.909 0.00 0.00 0.00 1.94
501 502 4.709250 ACTCCACTCAGACCTTCTTTTTC 58.291 43.478 0.00 0.00 0.00 2.29
503 504 4.962155 TCCACTCAGACCTTCTTTTTCTC 58.038 43.478 0.00 0.00 0.00 2.87
505 506 5.131142 TCCACTCAGACCTTCTTTTTCTCTT 59.869 40.000 0.00 0.00 0.00 2.85
507 508 5.468409 CACTCAGACCTTCTTTTTCTCTTCC 59.532 44.000 0.00 0.00 0.00 3.46
508 509 5.368230 ACTCAGACCTTCTTTTTCTCTTCCT 59.632 40.000 0.00 0.00 0.00 3.36
509 510 6.126623 ACTCAGACCTTCTTTTTCTCTTCCTT 60.127 38.462 0.00 0.00 0.00 3.36
510 511 6.292150 TCAGACCTTCTTTTTCTCTTCCTTC 58.708 40.000 0.00 0.00 0.00 3.46
511 512 6.100424 TCAGACCTTCTTTTTCTCTTCCTTCT 59.900 38.462 0.00 0.00 0.00 2.85
512 513 6.204495 CAGACCTTCTTTTTCTCTTCCTTCTG 59.796 42.308 0.00 0.00 0.00 3.02
513 514 4.824537 ACCTTCTTTTTCTCTTCCTTCTGC 59.175 41.667 0.00 0.00 0.00 4.26
515 516 2.808543 TCTTTTTCTCTTCCTTCTGCGC 59.191 45.455 0.00 0.00 0.00 6.09
516 517 2.254546 TTTTCTCTTCCTTCTGCGCA 57.745 45.000 10.98 10.98 0.00 6.09
517 518 2.254546 TTTCTCTTCCTTCTGCGCAA 57.745 45.000 13.05 0.00 0.00 4.85
518 519 2.254546 TTCTCTTCCTTCTGCGCAAA 57.745 45.000 13.05 8.18 0.00 3.68
519 520 1.512926 TCTCTTCCTTCTGCGCAAAC 58.487 50.000 13.05 0.00 0.00 2.93
520 521 0.519077 CTCTTCCTTCTGCGCAAACC 59.481 55.000 13.05 0.00 0.00 3.27
521 522 1.207593 CTTCCTTCTGCGCAAACCG 59.792 57.895 13.05 0.00 40.75 4.44
522 523 1.227704 TTCCTTCTGCGCAAACCGA 60.228 52.632 13.05 1.31 40.02 4.69
523 524 0.816018 TTCCTTCTGCGCAAACCGAA 60.816 50.000 13.05 10.70 40.02 4.30
524 525 0.605319 TCCTTCTGCGCAAACCGAAT 60.605 50.000 13.05 0.00 40.02 3.34
525 526 0.240945 CCTTCTGCGCAAACCGAATT 59.759 50.000 13.05 0.00 40.02 2.17
526 527 1.606606 CTTCTGCGCAAACCGAATTC 58.393 50.000 13.05 0.00 40.02 2.17
527 528 0.110419 TTCTGCGCAAACCGAATTCG 60.110 50.000 20.92 20.92 40.02 3.34
551 552 4.675408 GCGAGAGGATTTTCCAACCAATTC 60.675 45.833 0.00 0.00 39.61 2.17
553 554 4.407365 AGAGGATTTTCCAACCAATTCGT 58.593 39.130 0.00 0.00 39.61 3.85
567 568 4.201970 ACCAATTCGTCACAACAAAATCGT 60.202 37.500 0.00 0.00 0.00 3.73
568 569 5.007823 ACCAATTCGTCACAACAAAATCGTA 59.992 36.000 0.00 0.00 0.00 3.43
569 570 5.338559 CCAATTCGTCACAACAAAATCGTAC 59.661 40.000 0.00 0.00 0.00 3.67
570 571 5.917541 ATTCGTCACAACAAAATCGTACT 57.082 34.783 0.00 0.00 0.00 2.73
571 572 7.285069 CAATTCGTCACAACAAAATCGTACTA 58.715 34.615 0.00 0.00 0.00 1.82
572 573 5.811018 TCGTCACAACAAAATCGTACTAC 57.189 39.130 0.00 0.00 0.00 2.73
573 574 5.522456 TCGTCACAACAAAATCGTACTACT 58.478 37.500 0.00 0.00 0.00 2.57
574 575 6.667370 TCGTCACAACAAAATCGTACTACTA 58.333 36.000 0.00 0.00 0.00 1.82
575 576 6.578545 TCGTCACAACAAAATCGTACTACTAC 59.421 38.462 0.00 0.00 0.00 2.73
576 577 6.580041 CGTCACAACAAAATCGTACTACTACT 59.420 38.462 0.00 0.00 0.00 2.57
577 578 7.746034 CGTCACAACAAAATCGTACTACTACTA 59.254 37.037 0.00 0.00 0.00 1.82
578 579 8.844690 GTCACAACAAAATCGTACTACTACTAC 58.155 37.037 0.00 0.00 0.00 2.73
579 580 8.786898 TCACAACAAAATCGTACTACTACTACT 58.213 33.333 0.00 0.00 0.00 2.57
580 581 9.403110 CACAACAAAATCGTACTACTACTACTT 57.597 33.333 0.00 0.00 0.00 2.24
608 609 7.259290 ACAGAAACGTGAATGAACTTTGTAT 57.741 32.000 0.00 0.00 0.00 2.29
610 611 8.832521 ACAGAAACGTGAATGAACTTTGTATAA 58.167 29.630 0.00 0.00 0.00 0.98
703 704 9.968743 CAAAATACTGTAACTAATCGTCTTTCC 57.031 33.333 0.00 0.00 0.00 3.13
719 720 0.616371 TTCCCCATTACCACCAGACG 59.384 55.000 0.00 0.00 0.00 4.18
722 723 0.178068 CCCATTACCACCAGACGAGG 59.822 60.000 0.00 0.00 0.00 4.63
723 724 0.462047 CCATTACCACCAGACGAGGC 60.462 60.000 0.00 0.00 0.00 4.70
725 726 0.968901 ATTACCACCAGACGAGGCGA 60.969 55.000 0.00 0.00 0.00 5.54
726 727 1.592400 TTACCACCAGACGAGGCGAG 61.592 60.000 0.00 0.00 0.00 5.03
727 728 2.473891 TACCACCAGACGAGGCGAGA 62.474 60.000 0.00 0.00 0.00 4.04
728 729 2.487428 CACCAGACGAGGCGAGAG 59.513 66.667 0.00 0.00 0.00 3.20
746 747 4.586618 CAGTTCCCTCTGCGTCTG 57.413 61.111 0.00 0.00 0.00 3.51
747 748 1.739562 CAGTTCCCTCTGCGTCTGC 60.740 63.158 0.00 0.00 43.20 4.26
759 763 1.141665 CGTCTGCGTCCATCCATCA 59.858 57.895 0.00 0.00 0.00 3.07
772 776 1.763968 TCCATCATCCGTCGTCTTCT 58.236 50.000 0.00 0.00 0.00 2.85
794 798 2.038438 CCCTCCCATCCCATCCCA 60.038 66.667 0.00 0.00 0.00 4.37
797 801 1.504275 CCTCCCATCCCATCCCATCC 61.504 65.000 0.00 0.00 0.00 3.51
799 803 1.779644 CCCATCCCATCCCATCCCA 60.780 63.158 0.00 0.00 0.00 4.37
800 804 1.151083 CCCATCCCATCCCATCCCAT 61.151 60.000 0.00 0.00 0.00 4.00
801 805 0.333993 CCATCCCATCCCATCCCATC 59.666 60.000 0.00 0.00 0.00 3.51
802 806 0.333993 CATCCCATCCCATCCCATCC 59.666 60.000 0.00 0.00 0.00 3.51
803 807 0.852683 ATCCCATCCCATCCCATCCC 60.853 60.000 0.00 0.00 0.00 3.85
804 808 1.779644 CCCATCCCATCCCATCCCA 60.780 63.158 0.00 0.00 0.00 4.37
805 809 1.151083 CCCATCCCATCCCATCCCAT 61.151 60.000 0.00 0.00 0.00 4.00
806 810 0.333993 CCATCCCATCCCATCCCATC 59.666 60.000 0.00 0.00 0.00 3.51
807 811 0.333993 CATCCCATCCCATCCCATCC 59.666 60.000 0.00 0.00 0.00 3.51
808 812 1.210204 ATCCCATCCCATCCCATCCG 61.210 60.000 0.00 0.00 0.00 4.18
850 859 0.182299 CCCCTCTGCTTTCCTCATCC 59.818 60.000 0.00 0.00 0.00 3.51
851 860 0.182299 CCCTCTGCTTTCCTCATCCC 59.818 60.000 0.00 0.00 0.00 3.85
852 861 0.182299 CCTCTGCTTTCCTCATCCCC 59.818 60.000 0.00 0.00 0.00 4.81
853 862 1.211456 CTCTGCTTTCCTCATCCCCT 58.789 55.000 0.00 0.00 0.00 4.79
854 863 1.140652 CTCTGCTTTCCTCATCCCCTC 59.859 57.143 0.00 0.00 0.00 4.30
855 864 1.211456 CTGCTTTCCTCATCCCCTCT 58.789 55.000 0.00 0.00 0.00 3.69
856 865 0.914644 TGCTTTCCTCATCCCCTCTG 59.085 55.000 0.00 0.00 0.00 3.35
857 866 0.465278 GCTTTCCTCATCCCCTCTGC 60.465 60.000 0.00 0.00 0.00 4.26
858 867 0.182299 CTTTCCTCATCCCCTCTGCC 59.818 60.000 0.00 0.00 0.00 4.85
861 870 3.554342 CTCATCCCCTCTGCCCCG 61.554 72.222 0.00 0.00 0.00 5.73
907 916 3.893763 CGCAGGCGACTCGATCCT 61.894 66.667 8.15 0.00 40.21 3.24
908 917 2.026879 GCAGGCGACTCGATCCTC 59.973 66.667 1.63 0.00 40.21 3.71
909 918 2.485795 GCAGGCGACTCGATCCTCT 61.486 63.158 1.63 0.00 40.21 3.69
915 924 0.887387 CGACTCGATCCTCTCCCTCC 60.887 65.000 0.00 0.00 0.00 4.30
919 928 1.228737 CGATCCTCTCCCTCCCTCC 60.229 68.421 0.00 0.00 0.00 4.30
925 934 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
930 939 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
938 947 3.742248 CTCCCTCCCTCCCTCGTCC 62.742 73.684 0.00 0.00 0.00 4.79
1062 1080 2.667874 TGAGCACGCGCAATGGAA 60.668 55.556 5.73 0.00 42.27 3.53
1073 1091 1.034838 GCAATGGAACCCCGCACATA 61.035 55.000 0.00 0.00 34.29 2.29
1077 1095 0.916086 TGGAACCCCGCACATAGATT 59.084 50.000 0.00 0.00 34.29 2.40
1078 1096 1.283613 TGGAACCCCGCACATAGATTT 59.716 47.619 0.00 0.00 34.29 2.17
1079 1097 1.947456 GGAACCCCGCACATAGATTTC 59.053 52.381 0.00 0.00 0.00 2.17
1082 1100 2.643551 ACCCCGCACATAGATTTCTTG 58.356 47.619 0.00 0.00 0.00 3.02
1083 1101 2.026262 ACCCCGCACATAGATTTCTTGT 60.026 45.455 0.00 0.00 0.00 3.16
1084 1102 2.355756 CCCCGCACATAGATTTCTTGTG 59.644 50.000 13.72 13.72 42.80 3.33
1085 1103 2.355756 CCCGCACATAGATTTCTTGTGG 59.644 50.000 17.01 11.51 40.79 4.17
1086 1104 3.680642 CGCACATAGATTTCTTGTGGG 57.319 47.619 16.99 16.99 44.33 4.61
1087 1105 3.009723 CGCACATAGATTTCTTGTGGGT 58.990 45.455 19.61 0.00 44.55 4.51
1089 1107 3.758554 GCACATAGATTTCTTGTGGGTGT 59.241 43.478 17.01 0.00 40.79 4.16
1090 1108 4.941263 GCACATAGATTTCTTGTGGGTGTA 59.059 41.667 17.01 0.00 40.79 2.90
1091 1109 5.163754 GCACATAGATTTCTTGTGGGTGTAC 60.164 44.000 17.01 0.00 40.79 2.90
1112 1136 0.380733 GGGATTTTCACGGCGGATTC 59.619 55.000 13.24 3.85 0.00 2.52
1122 1146 1.832912 GGCGGATTCCCTGATCTGT 59.167 57.895 0.00 0.00 35.33 3.41
1123 1147 0.533755 GGCGGATTCCCTGATCTGTG 60.534 60.000 0.00 0.00 35.33 3.66
1127 1151 2.939103 CGGATTCCCTGATCTGTGTTTC 59.061 50.000 0.00 0.00 0.00 2.78
1129 1153 2.472695 TTCCCTGATCTGTGTTTCCG 57.527 50.000 0.00 0.00 0.00 4.30
1130 1154 0.613260 TCCCTGATCTGTGTTTCCGG 59.387 55.000 0.00 0.00 0.00 5.14
1131 1155 0.324943 CCCTGATCTGTGTTTCCGGT 59.675 55.000 0.00 0.00 0.00 5.28
1132 1156 1.442769 CCTGATCTGTGTTTCCGGTG 58.557 55.000 0.00 0.00 0.00 4.94
1133 1157 0.798776 CTGATCTGTGTTTCCGGTGC 59.201 55.000 0.00 0.00 0.00 5.01
1134 1158 0.396435 TGATCTGTGTTTCCGGTGCT 59.604 50.000 0.00 0.00 0.00 4.40
1136 1160 1.880027 GATCTGTGTTTCCGGTGCTTT 59.120 47.619 0.00 0.00 0.00 3.51
1137 1161 1.305201 TCTGTGTTTCCGGTGCTTTC 58.695 50.000 0.00 0.00 0.00 2.62
1138 1162 1.134220 TCTGTGTTTCCGGTGCTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
1139 1163 1.676006 CTGTGTTTCCGGTGCTTTCTT 59.324 47.619 0.00 0.00 0.00 2.52
1140 1164 2.096248 TGTGTTTCCGGTGCTTTCTTT 58.904 42.857 0.00 0.00 0.00 2.52
1231 1258 1.139095 GGCCCGAAGAGAGTACGTG 59.861 63.158 0.00 0.00 0.00 4.49
1234 1261 1.139095 CCGAAGAGAGTACGTGCCC 59.861 63.158 0.00 0.00 0.00 5.36
1251 1278 1.797025 CCCGCGTTTCTTCTTCTTCT 58.203 50.000 4.92 0.00 0.00 2.85
1252 1279 2.143925 CCCGCGTTTCTTCTTCTTCTT 58.856 47.619 4.92 0.00 0.00 2.52
1253 1280 3.323243 CCCGCGTTTCTTCTTCTTCTTA 58.677 45.455 4.92 0.00 0.00 2.10
1255 1282 4.235360 CCGCGTTTCTTCTTCTTCTTAGA 58.765 43.478 4.92 0.00 0.00 2.10
1258 1285 5.388578 CGCGTTTCTTCTTCTTCTTAGAACC 60.389 44.000 0.00 0.00 35.49 3.62
1259 1286 5.388578 GCGTTTCTTCTTCTTCTTAGAACCG 60.389 44.000 0.00 0.00 35.49 4.44
1261 1288 6.586844 CGTTTCTTCTTCTTCTTAGAACCGAT 59.413 38.462 0.00 0.00 35.43 4.18
1262 1289 7.116519 CGTTTCTTCTTCTTCTTAGAACCGATT 59.883 37.037 0.00 0.00 35.43 3.34
1263 1290 8.775527 GTTTCTTCTTCTTCTTAGAACCGATTT 58.224 33.333 0.00 0.00 35.49 2.17
1265 1292 7.667557 TCTTCTTCTTCTTAGAACCGATTTGA 58.332 34.615 0.00 0.00 35.49 2.69
1290 1334 2.573369 TCGCTTCTTCTCGCCTATAGT 58.427 47.619 0.00 0.00 0.00 2.12
1294 1338 3.366577 GCTTCTTCTCGCCTATAGTAGCC 60.367 52.174 0.00 0.00 0.00 3.93
1304 1348 3.898741 GCCTATAGTAGCCTCTGGTTTCT 59.101 47.826 0.00 0.00 0.00 2.52
1354 1398 4.214332 AGCACAAGTTTCGAGATTTCCTTC 59.786 41.667 0.00 0.00 0.00 3.46
1362 1432 4.116747 TCGAGATTTCCTTCTTCTGCTC 57.883 45.455 0.00 0.00 0.00 4.26
1363 1433 3.511540 TCGAGATTTCCTTCTTCTGCTCA 59.488 43.478 0.00 0.00 0.00 4.26
1380 1450 4.621991 TGCTCATTCTACCGATTTAGCTC 58.378 43.478 0.00 0.00 0.00 4.09
1385 1455 6.507900 TCATTCTACCGATTTAGCTCAAGAG 58.492 40.000 0.00 0.00 0.00 2.85
1396 1466 2.460330 CTCAAGAGCAACGCCGAAT 58.540 52.632 0.00 0.00 0.00 3.34
1397 1467 1.640428 CTCAAGAGCAACGCCGAATA 58.360 50.000 0.00 0.00 0.00 1.75
1398 1468 2.205074 CTCAAGAGCAACGCCGAATAT 58.795 47.619 0.00 0.00 0.00 1.28
1399 1469 3.381045 CTCAAGAGCAACGCCGAATATA 58.619 45.455 0.00 0.00 0.00 0.86
1400 1470 3.990092 TCAAGAGCAACGCCGAATATAT 58.010 40.909 0.00 0.00 0.00 0.86
1410 1480 6.477033 GCAACGCCGAATATATAGATCTCAAT 59.523 38.462 0.00 0.00 0.00 2.57
1415 1485 8.873830 CGCCGAATATATAGATCTCAATGTTTT 58.126 33.333 0.00 0.00 0.00 2.43
1423 1493 5.204673 AGATCTCAATGTTTTAACGTCGC 57.795 39.130 0.00 0.00 0.00 5.19
1424 1494 4.929808 AGATCTCAATGTTTTAACGTCGCT 59.070 37.500 0.00 0.00 0.00 4.93
1425 1495 4.383774 TCTCAATGTTTTAACGTCGCTG 57.616 40.909 0.00 0.00 0.00 5.18
1426 1496 3.185594 TCTCAATGTTTTAACGTCGCTGG 59.814 43.478 0.00 0.00 0.00 4.85
1427 1497 1.976045 CAATGTTTTAACGTCGCTGGC 59.024 47.619 0.00 0.00 0.00 4.85
1428 1498 1.231221 ATGTTTTAACGTCGCTGGCA 58.769 45.000 0.00 0.00 0.00 4.92
1430 1500 0.724785 GTTTTAACGTCGCTGGCAGC 60.725 55.000 29.22 29.22 38.02 5.25
1433 1503 1.289109 TTAACGTCGCTGGCAGCTTC 61.289 55.000 34.17 24.64 39.60 3.86
1440 1510 2.282674 CTGGCAGCTTCCCTTGCA 60.283 61.111 0.00 0.00 0.00 4.08
1441 1511 1.681327 CTGGCAGCTTCCCTTGCAT 60.681 57.895 0.00 0.00 0.00 3.96
1442 1512 1.945354 CTGGCAGCTTCCCTTGCATG 61.945 60.000 0.00 0.00 0.00 4.06
1447 1524 1.068055 CAGCTTCCCTTGCATGTTGAC 60.068 52.381 0.00 0.00 0.00 3.18
1456 1533 0.521291 TGCATGTTGACGCCTTTAGC 59.479 50.000 0.00 0.00 38.52 3.09
1458 1535 1.202076 GCATGTTGACGCCTTTAGCTC 60.202 52.381 0.00 0.00 40.39 4.09
1459 1536 2.350522 CATGTTGACGCCTTTAGCTCT 58.649 47.619 0.00 0.00 40.39 4.09
1477 1554 5.619625 GCTCTTGTTAAGCTTCAGTGATT 57.380 39.130 0.00 0.00 36.80 2.57
1478 1555 6.727824 GCTCTTGTTAAGCTTCAGTGATTA 57.272 37.500 0.00 0.00 36.80 1.75
1479 1556 7.313951 GCTCTTGTTAAGCTTCAGTGATTAT 57.686 36.000 0.00 0.00 36.80 1.28
1484 1561 9.334693 CTTGTTAAGCTTCAGTGATTATGTTTC 57.665 33.333 0.00 0.00 0.00 2.78
1493 1570 5.822519 TCAGTGATTATGTTTCCATACCAGC 59.177 40.000 0.00 0.00 33.29 4.85
1494 1571 5.009010 CAGTGATTATGTTTCCATACCAGCC 59.991 44.000 0.00 0.00 33.29 4.85
1495 1572 4.278419 GTGATTATGTTTCCATACCAGCCC 59.722 45.833 0.00 0.00 33.29 5.19
1496 1573 4.079500 TGATTATGTTTCCATACCAGCCCA 60.080 41.667 0.00 0.00 33.29 5.36
1497 1574 2.442236 ATGTTTCCATACCAGCCCAG 57.558 50.000 0.00 0.00 0.00 4.45
1528 1609 4.697352 AGATGAGTTGCTACAATGGTTGAC 59.303 41.667 0.13 0.00 0.00 3.18
1531 1612 2.554032 AGTTGCTACAATGGTTGACTGC 59.446 45.455 0.13 0.00 0.00 4.40
1540 1621 0.034476 TGGTTGACTGCTGCTCTCAG 59.966 55.000 0.00 0.00 43.16 3.35
1546 1627 0.249676 ACTGCTGCTCTCAGTGATGG 59.750 55.000 0.00 0.00 42.63 3.51
1547 1628 0.535797 CTGCTGCTCTCAGTGATGGA 59.464 55.000 0.00 0.00 42.29 3.41
1548 1629 1.139256 CTGCTGCTCTCAGTGATGGAT 59.861 52.381 0.00 0.00 42.29 3.41
1549 1630 1.558294 TGCTGCTCTCAGTGATGGATT 59.442 47.619 0.00 0.00 42.29 3.01
1550 1631 2.026542 TGCTGCTCTCAGTGATGGATTT 60.027 45.455 0.00 0.00 42.29 2.17
1551 1632 3.015327 GCTGCTCTCAGTGATGGATTTT 58.985 45.455 0.00 0.00 42.29 1.82
1555 1636 6.484643 GCTGCTCTCAGTGATGGATTTTAATA 59.515 38.462 0.00 0.00 42.29 0.98
1684 1765 3.059966 CGAATGTCGATGAACTGTGAGTG 59.940 47.826 0.00 0.00 43.74 3.51
1686 1767 3.452755 TGTCGATGAACTGTGAGTGTT 57.547 42.857 0.00 0.00 0.00 3.32
1687 1768 3.381045 TGTCGATGAACTGTGAGTGTTC 58.619 45.455 0.00 0.00 42.77 3.18
1693 1778 2.949644 TGAACTGTGAGTGTTCTCTCGA 59.050 45.455 7.89 0.00 42.86 4.04
1720 1805 2.145958 ATTCATGCTCAGTCGATCCG 57.854 50.000 0.00 0.00 0.00 4.18
1741 1829 9.209175 GATCCGAAACTATGATGCTATAACTTT 57.791 33.333 0.00 0.00 0.00 2.66
1742 1830 8.589335 TCCGAAACTATGATGCTATAACTTTC 57.411 34.615 0.00 0.00 0.00 2.62
1743 1831 8.421784 TCCGAAACTATGATGCTATAACTTTCT 58.578 33.333 0.00 0.00 0.00 2.52
1744 1832 9.692749 CCGAAACTATGATGCTATAACTTTCTA 57.307 33.333 0.00 0.00 0.00 2.10
1874 1962 9.574458 CTCTCTATTTCATTGTTCTTTAGACGA 57.426 33.333 0.00 0.00 0.00 4.20
1875 1963 9.923143 TCTCTATTTCATTGTTCTTTAGACGAA 57.077 29.630 0.00 0.00 0.00 3.85
1912 2000 7.707035 AGCTTCCTTACATTCTCTGTATAAACG 59.293 37.037 0.00 0.00 40.02 3.60
1913 2001 7.516943 GCTTCCTTACATTCTCTGTATAAACGC 60.517 40.741 0.00 0.00 40.02 4.84
1935 2025 4.495422 CAGAGCTCTACGGTTGTTGTTAT 58.505 43.478 17.75 0.00 0.00 1.89
1959 2049 5.239306 TGACAATCTTCTAACCTTGCAACTG 59.761 40.000 0.00 0.00 0.00 3.16
2033 2125 6.475402 CGCAACTTTTGTTATATCCAAATCCC 59.525 38.462 2.37 0.00 41.35 3.85
2048 2140 5.103387 TCCAAATCCCTCTGATCCATTGAAT 60.103 40.000 0.00 0.00 31.61 2.57
2280 2372 5.972935 TGCCGAGTTCATCTAGACAATAAA 58.027 37.500 0.00 0.00 0.00 1.40
2392 2484 6.837992 CGAAAGCCTGCATTTAGTAACTAAA 58.162 36.000 0.00 0.00 39.73 1.85
2443 2536 2.556287 GACGTGGCGGCTTCTTTG 59.444 61.111 11.43 0.00 0.00 2.77
2555 2648 4.470334 AAGAATGTTGGTTTGTTGCAGT 57.530 36.364 0.00 0.00 0.00 4.40
2754 2847 6.699575 AATTTATGTGGTACAAGGAGATGC 57.300 37.500 0.00 0.00 44.16 3.91
2824 2917 8.630917 TCAAAATACAAGTTCGTTTATGGGAAA 58.369 29.630 0.00 0.00 0.00 3.13
2830 2923 5.059404 AGTTCGTTTATGGGAAATTGCTG 57.941 39.130 0.00 0.00 0.00 4.41
2881 2974 1.071699 TGCGCCCAAGTCTAATATCCC 59.928 52.381 4.18 0.00 0.00 3.85
3057 3168 8.178313 GCTCTGCCTATTAGTTAAGTTGAAAAG 58.822 37.037 0.00 0.00 0.00 2.27
3062 3173 8.666573 GCCTATTAGTTAAGTTGAAAAGGAGAC 58.333 37.037 0.00 0.00 0.00 3.36
3078 6574 0.317479 AGACGGTCTGTACAAGCACC 59.683 55.000 10.41 2.67 0.00 5.01
3091 6587 0.390124 AAGCACCTGTGGCATGTTTG 59.610 50.000 0.00 0.00 0.00 2.93
3113 6609 3.244044 GCTAGAAAACATGCCAAAACCCA 60.244 43.478 0.00 0.00 0.00 4.51
3119 6615 6.262049 AGAAAACATGCCAAAACCCAAATAAC 59.738 34.615 0.00 0.00 0.00 1.89
3177 6673 7.097192 GGATCATGAGGTAATGCGATAAGTAA 58.903 38.462 0.09 0.00 0.00 2.24
3193 6689 8.988934 GCGATAAGTAATTGTAATCATGGAAGA 58.011 33.333 0.00 0.00 0.00 2.87
3310 6806 3.533606 GCTTGTGCTTCTAGGATGAGA 57.466 47.619 0.00 0.00 36.03 3.27
3339 6835 8.311650 AGACGCTTTGCTTTATTCGAATATAT 57.688 30.769 18.18 0.00 0.00 0.86
3437 6936 8.358148 TCATCAGGAGATACTATTTTCGTAACC 58.642 37.037 0.00 0.00 31.88 2.85
3438 6937 7.649533 TCAGGAGATACTATTTTCGTAACCA 57.350 36.000 0.00 0.00 0.00 3.67
3458 6957 4.710865 ACCATATGCATGTTTGTTGGATCA 59.289 37.500 10.16 0.00 0.00 2.92
3663 7162 2.169352 CCCATAGTCAGTTCAGGACCTG 59.831 54.545 15.99 15.99 35.89 4.00
3674 7173 2.434359 GGACCTGTTTCTCCGGCG 60.434 66.667 0.00 0.00 0.00 6.46
3680 7179 0.240945 CTGTTTCTCCGGCGCAATTT 59.759 50.000 10.83 0.00 0.00 1.82
3687 7186 2.354422 CGGCGCAATTTGCACACA 60.354 55.556 20.56 0.00 45.36 3.72
3734 7233 1.045407 ACAGCCTGTAGTTCGTCCAA 58.955 50.000 0.00 0.00 0.00 3.53
3735 7234 1.000955 ACAGCCTGTAGTTCGTCCAAG 59.999 52.381 0.00 0.00 0.00 3.61
3844 7343 9.401058 ACTTAAATTTACCTTCTGAGATGGATG 57.599 33.333 19.92 2.35 32.18 3.51
3849 7348 1.134580 CCTTCTGAGATGGATGTGCGT 60.135 52.381 8.61 0.00 0.00 5.24
3850 7349 2.200067 CTTCTGAGATGGATGTGCGTC 58.800 52.381 0.00 0.00 0.00 5.19
3851 7350 1.185315 TCTGAGATGGATGTGCGTCA 58.815 50.000 0.00 0.00 0.00 4.35
3924 7423 1.605710 TCGTCGATTTCCTACGGGATC 59.394 52.381 0.00 0.00 41.87 3.36
3936 7436 0.608640 ACGGGATCGAGCTGTTTTCT 59.391 50.000 0.00 0.00 40.11 2.52
3963 7463 0.465460 TTCCTGCGCTCCAAACTGTT 60.465 50.000 9.73 0.00 0.00 3.16
3972 7472 2.289694 GCTCCAAACTGTTCCTAGCTGA 60.290 50.000 0.00 0.00 0.00 4.26
4053 7553 8.305317 GTTCAGTAGTTAGTTTGTACTCCATCT 58.695 37.037 0.00 0.00 35.78 2.90
4180 7680 5.737860 TCTGCTCATGCTATATATGGTTGG 58.262 41.667 0.00 0.00 40.48 3.77
4189 7689 7.509141 TGCTATATATGGTTGGTTGATGTTG 57.491 36.000 0.00 0.00 0.00 3.33
4190 7690 7.286313 TGCTATATATGGTTGGTTGATGTTGA 58.714 34.615 0.00 0.00 0.00 3.18
4191 7691 7.944000 TGCTATATATGGTTGGTTGATGTTGAT 59.056 33.333 0.00 0.00 0.00 2.57
4192 7692 9.448438 GCTATATATGGTTGGTTGATGTTGATA 57.552 33.333 0.00 0.00 0.00 2.15
4236 7736 7.253422 ACTCTGTTGAACTTCAAATGTTTGAG 58.747 34.615 5.76 9.31 46.68 3.02
4247 7747 9.353999 ACTTCAAATGTTTGAGTTAGAACAAAC 57.646 29.630 13.46 13.46 46.68 2.93
4294 7798 6.880484 ACGGATGGAGTACATGTATGTAAAA 58.120 36.000 9.18 0.00 44.11 1.52
4335 7839 6.271488 TCCAAAGAGGAAATGCTGTATTTG 57.729 37.500 8.46 0.00 45.65 2.32
4356 7860 1.271762 GGGGGTGGTTTCAGTAGGAAC 60.272 57.143 0.00 0.00 34.56 3.62
4381 7885 1.127951 CATTCGTGTAGCGGTTGGTTC 59.872 52.381 0.00 0.00 41.72 3.62
4385 7889 0.233848 GTGTAGCGGTTGGTTCGTTG 59.766 55.000 0.00 0.00 0.00 4.10
4386 7890 0.881159 TGTAGCGGTTGGTTCGTTGG 60.881 55.000 0.00 0.00 0.00 3.77
4387 7891 1.962306 TAGCGGTTGGTTCGTTGGC 60.962 57.895 0.00 0.00 0.00 4.52
4388 7892 4.337060 GCGGTTGGTTCGTTGGCC 62.337 66.667 0.00 0.00 0.00 5.36
4422 7932 0.031585 TGGTCGTTTGGAGACTGACG 59.968 55.000 0.00 0.00 38.58 4.35
4448 7958 0.389948 GTCTCATCACGGGCGTCTTT 60.390 55.000 0.00 0.00 0.00 2.52
4449 7959 0.389817 TCTCATCACGGGCGTCTTTG 60.390 55.000 0.00 0.00 0.00 2.77
4609 8121 2.174969 CGACGAGGAGGACGAGGAG 61.175 68.421 0.00 0.00 34.70 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.440127 GGCACTGCGGGGCAAATG 62.440 66.667 23.85 0.00 38.41 2.32
6 7 2.746375 ATTAGAGGGCACTGCGGGG 61.746 63.158 0.00 0.00 0.00 5.73
7 8 1.524621 CATTAGAGGGCACTGCGGG 60.525 63.158 0.00 0.00 0.00 6.13
8 9 1.524621 CCATTAGAGGGCACTGCGG 60.525 63.158 0.00 0.00 0.00 5.69
9 10 4.131376 CCATTAGAGGGCACTGCG 57.869 61.111 0.00 0.00 0.00 5.18
16 17 1.070445 CCTCGCAGCCATTAGAGGG 59.930 63.158 5.57 0.00 44.78 4.30
17 18 4.766970 CCTCGCAGCCATTAGAGG 57.233 61.111 0.00 0.00 43.43 3.69
18 19 0.033228 CCTCCTCGCAGCCATTAGAG 59.967 60.000 0.00 0.00 0.00 2.43
19 20 1.402896 CCCTCCTCGCAGCCATTAGA 61.403 60.000 0.00 0.00 0.00 2.10
20 21 1.070445 CCCTCCTCGCAGCCATTAG 59.930 63.158 0.00 0.00 0.00 1.73
21 22 2.443394 CCCCTCCTCGCAGCCATTA 61.443 63.158 0.00 0.00 0.00 1.90
22 23 3.801997 CCCCTCCTCGCAGCCATT 61.802 66.667 0.00 0.00 0.00 3.16
51 52 3.267597 AAATCACCGCTGCCGTTGC 62.268 57.895 0.00 0.00 38.26 4.17
52 53 1.442520 CAAATCACCGCTGCCGTTG 60.443 57.895 0.00 0.00 0.00 4.10
53 54 2.625823 CCAAATCACCGCTGCCGTT 61.626 57.895 0.00 0.00 0.00 4.44
54 55 3.055719 CCAAATCACCGCTGCCGT 61.056 61.111 0.00 0.00 0.00 5.68
55 56 3.814268 CCCAAATCACCGCTGCCG 61.814 66.667 0.00 0.00 0.00 5.69
56 57 3.451894 CCCCAAATCACCGCTGCC 61.452 66.667 0.00 0.00 0.00 4.85
57 58 1.815817 AAACCCCAAATCACCGCTGC 61.816 55.000 0.00 0.00 0.00 5.25
58 59 0.243636 GAAACCCCAAATCACCGCTG 59.756 55.000 0.00 0.00 0.00 5.18
59 60 0.112412 AGAAACCCCAAATCACCGCT 59.888 50.000 0.00 0.00 0.00 5.52
60 61 0.526211 GAGAAACCCCAAATCACCGC 59.474 55.000 0.00 0.00 0.00 5.68
61 62 1.173913 GGAGAAACCCCAAATCACCG 58.826 55.000 0.00 0.00 0.00 4.94
84 85 4.090057 GTCGTTCCTTGCAGCGGC 62.090 66.667 0.31 0.31 41.68 6.53
85 86 2.664851 TGTCGTTCCTTGCAGCGG 60.665 61.111 0.00 0.00 0.00 5.52
86 87 2.551270 GTGTCGTTCCTTGCAGCG 59.449 61.111 0.00 0.00 0.00 5.18
87 88 1.495584 TTCGTGTCGTTCCTTGCAGC 61.496 55.000 0.00 0.00 0.00 5.25
88 89 0.934496 TTTCGTGTCGTTCCTTGCAG 59.066 50.000 0.00 0.00 0.00 4.41
89 90 1.370609 TTTTCGTGTCGTTCCTTGCA 58.629 45.000 0.00 0.00 0.00 4.08
90 91 2.032377 TCATTTTCGTGTCGTTCCTTGC 60.032 45.455 0.00 0.00 0.00 4.01
91 92 3.541711 GTCATTTTCGTGTCGTTCCTTG 58.458 45.455 0.00 0.00 0.00 3.61
92 93 2.546789 GGTCATTTTCGTGTCGTTCCTT 59.453 45.455 0.00 0.00 0.00 3.36
93 94 2.140717 GGTCATTTTCGTGTCGTTCCT 58.859 47.619 0.00 0.00 0.00 3.36
94 95 1.196127 GGGTCATTTTCGTGTCGTTCC 59.804 52.381 0.00 0.00 0.00 3.62
95 96 1.868498 TGGGTCATTTTCGTGTCGTTC 59.132 47.619 0.00 0.00 0.00 3.95
96 97 1.956297 TGGGTCATTTTCGTGTCGTT 58.044 45.000 0.00 0.00 0.00 3.85
97 98 1.804151 CATGGGTCATTTTCGTGTCGT 59.196 47.619 0.00 0.00 0.00 4.34
98 99 2.073056 TCATGGGTCATTTTCGTGTCG 58.927 47.619 0.00 0.00 0.00 4.35
99 100 4.497473 TTTCATGGGTCATTTTCGTGTC 57.503 40.909 0.00 0.00 0.00 3.67
100 101 4.098654 TGTTTTCATGGGTCATTTTCGTGT 59.901 37.500 0.00 0.00 0.00 4.49
101 102 4.615949 TGTTTTCATGGGTCATTTTCGTG 58.384 39.130 0.00 0.00 0.00 4.35
102 103 4.927978 TGTTTTCATGGGTCATTTTCGT 57.072 36.364 0.00 0.00 0.00 3.85
103 104 5.288804 ACTTGTTTTCATGGGTCATTTTCG 58.711 37.500 0.00 0.00 0.00 3.46
104 105 9.921637 TTATACTTGTTTTCATGGGTCATTTTC 57.078 29.630 0.00 0.00 0.00 2.29
107 108 9.874205 CAATTATACTTGTTTTCATGGGTCATT 57.126 29.630 0.00 0.00 0.00 2.57
108 109 8.477256 CCAATTATACTTGTTTTCATGGGTCAT 58.523 33.333 2.55 0.00 0.00 3.06
109 110 7.093552 CCCAATTATACTTGTTTTCATGGGTCA 60.094 37.037 0.00 0.00 39.12 4.02
110 111 7.123547 TCCCAATTATACTTGTTTTCATGGGTC 59.876 37.037 0.00 0.00 43.37 4.46
111 112 6.957020 TCCCAATTATACTTGTTTTCATGGGT 59.043 34.615 0.00 0.00 43.37 4.51
112 113 7.093552 TGTCCCAATTATACTTGTTTTCATGGG 60.094 37.037 0.00 0.00 44.08 4.00
113 114 7.835822 TGTCCCAATTATACTTGTTTTCATGG 58.164 34.615 2.55 0.00 0.00 3.66
114 115 9.357652 CTTGTCCCAATTATACTTGTTTTCATG 57.642 33.333 2.55 0.00 0.00 3.07
115 116 9.088987 ACTTGTCCCAATTATACTTGTTTTCAT 57.911 29.630 2.55 0.00 0.00 2.57
116 117 8.472007 ACTTGTCCCAATTATACTTGTTTTCA 57.528 30.769 2.55 0.00 0.00 2.69
119 120 8.466798 GCATACTTGTCCCAATTATACTTGTTT 58.533 33.333 2.55 0.00 0.00 2.83
120 121 7.613801 TGCATACTTGTCCCAATTATACTTGTT 59.386 33.333 2.55 0.00 0.00 2.83
121 122 7.116075 TGCATACTTGTCCCAATTATACTTGT 58.884 34.615 2.55 0.00 0.00 3.16
122 123 7.566760 TGCATACTTGTCCCAATTATACTTG 57.433 36.000 0.00 0.00 0.00 3.16
123 124 8.588290 TTTGCATACTTGTCCCAATTATACTT 57.412 30.769 0.00 0.00 0.00 2.24
124 125 7.834181 ACTTTGCATACTTGTCCCAATTATACT 59.166 33.333 0.00 0.00 0.00 2.12
125 126 7.915397 CACTTTGCATACTTGTCCCAATTATAC 59.085 37.037 0.00 0.00 0.00 1.47
126 127 7.416213 GCACTTTGCATACTTGTCCCAATTATA 60.416 37.037 0.00 0.00 44.26 0.98
127 128 6.627953 GCACTTTGCATACTTGTCCCAATTAT 60.628 38.462 0.00 0.00 44.26 1.28
128 129 5.336372 GCACTTTGCATACTTGTCCCAATTA 60.336 40.000 0.00 0.00 44.26 1.40
129 130 4.561326 GCACTTTGCATACTTGTCCCAATT 60.561 41.667 0.00 0.00 44.26 2.32
130 131 3.056607 GCACTTTGCATACTTGTCCCAAT 60.057 43.478 0.00 0.00 44.26 3.16
131 132 2.295909 GCACTTTGCATACTTGTCCCAA 59.704 45.455 0.00 0.00 44.26 4.12
132 133 1.885887 GCACTTTGCATACTTGTCCCA 59.114 47.619 0.00 0.00 44.26 4.37
133 134 2.636768 GCACTTTGCATACTTGTCCC 57.363 50.000 0.00 0.00 44.26 4.46
150 151 0.313672 CCTTGCGTGCCTTTTTAGCA 59.686 50.000 0.00 0.00 38.08 3.49
151 152 0.596082 TCCTTGCGTGCCTTTTTAGC 59.404 50.000 0.00 0.00 0.00 3.09
152 153 1.401539 GCTCCTTGCGTGCCTTTTTAG 60.402 52.381 0.00 0.00 0.00 1.85
153 154 0.596082 GCTCCTTGCGTGCCTTTTTA 59.404 50.000 0.00 0.00 0.00 1.52
154 155 1.363807 GCTCCTTGCGTGCCTTTTT 59.636 52.632 0.00 0.00 0.00 1.94
155 156 3.042560 GCTCCTTGCGTGCCTTTT 58.957 55.556 0.00 0.00 0.00 2.27
168 169 1.685148 CAAAGCCCAAGGATAGCTCC 58.315 55.000 0.00 0.00 42.43 4.70
169 170 1.212935 TCCAAAGCCCAAGGATAGCTC 59.787 52.381 0.00 0.00 35.30 4.09
170 171 1.298953 TCCAAAGCCCAAGGATAGCT 58.701 50.000 0.00 0.00 38.88 3.32
171 172 2.234143 GATCCAAAGCCCAAGGATAGC 58.766 52.381 0.00 0.00 42.03 2.97
172 173 2.498167 CGATCCAAAGCCCAAGGATAG 58.502 52.381 0.00 0.00 42.03 2.08
173 174 1.142870 CCGATCCAAAGCCCAAGGATA 59.857 52.381 0.00 0.00 42.03 2.59
174 175 0.106519 CCGATCCAAAGCCCAAGGAT 60.107 55.000 0.00 0.00 44.53 3.24
175 176 1.302949 CCGATCCAAAGCCCAAGGA 59.697 57.895 0.00 0.00 35.59 3.36
176 177 2.418083 GCCGATCCAAAGCCCAAGG 61.418 63.158 0.00 0.00 0.00 3.61
177 178 2.764314 CGCCGATCCAAAGCCCAAG 61.764 63.158 0.00 0.00 0.00 3.61
178 179 2.749839 CGCCGATCCAAAGCCCAA 60.750 61.111 0.00 0.00 0.00 4.12
179 180 4.794648 CCGCCGATCCAAAGCCCA 62.795 66.667 0.00 0.00 0.00 5.36
180 181 4.483243 TCCGCCGATCCAAAGCCC 62.483 66.667 0.00 0.00 0.00 5.19
181 182 2.897350 CTCCGCCGATCCAAAGCC 60.897 66.667 0.00 0.00 0.00 4.35
182 183 2.897350 CCTCCGCCGATCCAAAGC 60.897 66.667 0.00 0.00 0.00 3.51
183 184 1.227380 CTCCTCCGCCGATCCAAAG 60.227 63.158 0.00 0.00 0.00 2.77
184 185 2.900273 CTCCTCCGCCGATCCAAA 59.100 61.111 0.00 0.00 0.00 3.28
185 186 3.849951 GCTCCTCCGCCGATCCAA 61.850 66.667 0.00 0.00 0.00 3.53
203 204 4.592192 ATCCACGCCGCCATCTCG 62.592 66.667 0.00 0.00 0.00 4.04
204 205 2.663188 GATCCACGCCGCCATCTC 60.663 66.667 0.00 0.00 0.00 2.75
205 206 3.030168 TTGATCCACGCCGCCATCT 62.030 57.895 0.00 0.00 0.00 2.90
206 207 2.513666 TTGATCCACGCCGCCATC 60.514 61.111 0.00 0.00 0.00 3.51
207 208 2.824041 GTTGATCCACGCCGCCAT 60.824 61.111 0.00 0.00 0.00 4.40
216 217 1.602323 GGTTGCCGTGGTTGATCCA 60.602 57.895 0.00 0.00 45.01 3.41
217 218 1.175983 TTGGTTGCCGTGGTTGATCC 61.176 55.000 0.00 0.00 0.00 3.36
218 219 0.240945 CTTGGTTGCCGTGGTTGATC 59.759 55.000 0.00 0.00 0.00 2.92
219 220 0.179004 TCTTGGTTGCCGTGGTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
220 221 1.098712 GTCTTGGTTGCCGTGGTTGA 61.099 55.000 0.00 0.00 0.00 3.18
221 222 1.358759 GTCTTGGTTGCCGTGGTTG 59.641 57.895 0.00 0.00 0.00 3.77
222 223 2.184167 CGTCTTGGTTGCCGTGGTT 61.184 57.895 0.00 0.00 0.00 3.67
223 224 2.590575 CGTCTTGGTTGCCGTGGT 60.591 61.111 0.00 0.00 0.00 4.16
224 225 2.590575 ACGTCTTGGTTGCCGTGG 60.591 61.111 0.00 0.00 31.43 4.94
225 226 2.631428 CACGTCTTGGTTGCCGTG 59.369 61.111 0.00 0.00 43.70 4.94
226 227 1.885850 GTCACGTCTTGGTTGCCGT 60.886 57.895 0.00 0.00 0.00 5.68
227 228 1.885388 TGTCACGTCTTGGTTGCCG 60.885 57.895 0.00 0.00 0.00 5.69
228 229 0.814010 AGTGTCACGTCTTGGTTGCC 60.814 55.000 0.00 0.00 0.00 4.52
229 230 1.003866 GAAGTGTCACGTCTTGGTTGC 60.004 52.381 11.19 0.00 0.00 4.17
230 231 2.550978 AGAAGTGTCACGTCTTGGTTG 58.449 47.619 14.78 0.00 33.16 3.77
231 232 2.981859 AGAAGTGTCACGTCTTGGTT 57.018 45.000 14.78 0.00 33.16 3.67
232 233 2.981859 AAGAAGTGTCACGTCTTGGT 57.018 45.000 26.80 9.08 43.45 3.67
233 234 4.616181 AAAAAGAAGTGTCACGTCTTGG 57.384 40.909 27.69 0.00 44.11 3.61
259 260 6.592607 AGAAGTGTCACGTCTAAGTTCAAAAA 59.407 34.615 18.37 0.00 35.23 1.94
260 261 6.103997 AGAAGTGTCACGTCTAAGTTCAAAA 58.896 36.000 18.37 0.00 35.23 2.44
261 262 5.657474 AGAAGTGTCACGTCTAAGTTCAAA 58.343 37.500 18.37 0.00 35.23 2.69
262 263 5.258456 AGAAGTGTCACGTCTAAGTTCAA 57.742 39.130 18.37 0.00 35.23 2.69
263 264 4.913335 AGAAGTGTCACGTCTAAGTTCA 57.087 40.909 18.37 0.00 35.23 3.18
264 265 4.444720 CCAAGAAGTGTCACGTCTAAGTTC 59.555 45.833 19.82 6.35 35.94 3.01
265 266 4.369182 CCAAGAAGTGTCACGTCTAAGTT 58.631 43.478 19.82 3.76 35.94 2.66
266 267 3.243771 CCCAAGAAGTGTCACGTCTAAGT 60.244 47.826 19.82 4.10 35.94 2.24
267 268 3.005472 TCCCAAGAAGTGTCACGTCTAAG 59.995 47.826 19.82 15.22 35.94 2.18
268 269 2.960384 TCCCAAGAAGTGTCACGTCTAA 59.040 45.455 19.82 5.72 35.94 2.10
269 270 2.589720 TCCCAAGAAGTGTCACGTCTA 58.410 47.619 19.82 3.76 35.94 2.59
270 271 1.410004 TCCCAAGAAGTGTCACGTCT 58.590 50.000 14.78 14.78 38.56 4.18
285 286 1.134965 CCAAACAAACAACGCTTCCCA 60.135 47.619 0.00 0.00 0.00 4.37
290 291 1.679153 CCCTACCAAACAAACAACGCT 59.321 47.619 0.00 0.00 0.00 5.07
315 316 4.856801 CGGCAAGATCCCGTGGGG 62.857 72.222 4.81 0.00 46.11 4.96
325 326 2.325583 ACAAAACTCTGTCGGCAAGA 57.674 45.000 6.27 0.00 0.00 3.02
364 365 2.309528 TATCCTACTGCTGTTTGGCG 57.690 50.000 0.09 0.00 34.52 5.69
371 372 3.812053 GAGGTTGCAATATCCTACTGCTG 59.188 47.826 0.59 0.00 37.00 4.41
374 375 2.802816 GCGAGGTTGCAATATCCTACTG 59.197 50.000 0.59 0.00 34.15 2.74
395 396 1.577616 CGATTTTCGCGTGCTTCCG 60.578 57.895 5.77 0.36 31.14 4.30
398 399 1.495951 GTCCGATTTTCGCGTGCTT 59.504 52.632 5.77 0.00 38.82 3.91
400 401 2.275812 CGTCCGATTTTCGCGTGC 60.276 61.111 5.77 0.00 38.82 5.34
425 426 1.203313 CGACGGTGCCGAGTTTTTC 59.797 57.895 18.16 2.26 42.83 2.29
426 427 2.248835 CCGACGGTGCCGAGTTTTT 61.249 57.895 18.16 0.00 42.83 1.94
449 450 2.598907 CGTTTATATGGCAGCGAAACGG 60.599 50.000 24.16 12.85 45.19 4.44
450 451 2.624766 CGTTTATATGGCAGCGAAACG 58.375 47.619 21.04 21.04 44.13 3.60
455 456 1.459592 GCCTACGTTTATATGGCAGCG 59.540 52.381 0.00 0.00 42.79 5.18
492 493 4.612486 GCGCAGAAGGAAGAGAAAAAGAAG 60.612 45.833 0.30 0.00 0.00 2.85
495 496 2.549754 TGCGCAGAAGGAAGAGAAAAAG 59.450 45.455 5.66 0.00 0.00 2.27
497 498 2.254546 TGCGCAGAAGGAAGAGAAAA 57.745 45.000 5.66 0.00 0.00 2.29
499 500 1.873591 GTTTGCGCAGAAGGAAGAGAA 59.126 47.619 11.31 0.00 0.00 2.87
500 501 1.512926 GTTTGCGCAGAAGGAAGAGA 58.487 50.000 11.31 0.00 0.00 3.10
501 502 0.519077 GGTTTGCGCAGAAGGAAGAG 59.481 55.000 11.31 0.00 0.00 2.85
503 504 1.207593 CGGTTTGCGCAGAAGGAAG 59.792 57.895 11.31 0.00 0.00 3.46
505 506 0.605319 ATTCGGTTTGCGCAGAAGGA 60.605 50.000 11.31 3.96 0.00 3.36
507 508 1.606606 GAATTCGGTTTGCGCAGAAG 58.393 50.000 11.31 4.10 0.00 2.85
508 509 0.110419 CGAATTCGGTTTGCGCAGAA 60.110 50.000 20.16 11.48 35.37 3.02
509 510 1.495509 CGAATTCGGTTTGCGCAGA 59.504 52.632 20.16 2.14 35.37 4.26
510 511 4.041026 CGAATTCGGTTTGCGCAG 57.959 55.556 20.16 0.00 35.37 5.18
520 521 1.571919 AAATCCTCTCGCCGAATTCG 58.428 50.000 20.92 20.92 39.44 3.34
521 522 2.288186 GGAAAATCCTCTCGCCGAATTC 59.712 50.000 0.00 0.00 32.53 2.17
522 523 2.289565 GGAAAATCCTCTCGCCGAATT 58.710 47.619 0.00 0.00 32.53 2.17
523 524 1.209504 TGGAAAATCCTCTCGCCGAAT 59.790 47.619 0.00 0.00 37.46 3.34
524 525 0.611200 TGGAAAATCCTCTCGCCGAA 59.389 50.000 0.00 0.00 37.46 4.30
525 526 0.611200 TTGGAAAATCCTCTCGCCGA 59.389 50.000 0.00 0.00 37.46 5.54
526 527 0.727398 GTTGGAAAATCCTCTCGCCG 59.273 55.000 0.00 0.00 37.46 6.46
527 528 1.095600 GGTTGGAAAATCCTCTCGCC 58.904 55.000 0.00 0.00 37.46 5.54
528 529 1.821216 TGGTTGGAAAATCCTCTCGC 58.179 50.000 0.00 0.00 37.46 5.03
529 530 4.437390 CGAATTGGTTGGAAAATCCTCTCG 60.437 45.833 0.00 0.00 37.46 4.04
530 531 4.459337 ACGAATTGGTTGGAAAATCCTCTC 59.541 41.667 0.00 0.00 37.46 3.20
531 532 4.407365 ACGAATTGGTTGGAAAATCCTCT 58.593 39.130 0.00 0.00 37.46 3.69
532 533 4.217550 TGACGAATTGGTTGGAAAATCCTC 59.782 41.667 0.00 0.00 37.46 3.71
533 534 4.022329 GTGACGAATTGGTTGGAAAATCCT 60.022 41.667 0.00 0.00 37.46 3.24
534 535 4.234574 GTGACGAATTGGTTGGAAAATCC 58.765 43.478 0.00 0.00 36.96 3.01
535 536 4.865776 TGTGACGAATTGGTTGGAAAATC 58.134 39.130 0.00 0.00 0.00 2.17
536 537 4.927978 TGTGACGAATTGGTTGGAAAAT 57.072 36.364 0.00 0.00 0.00 1.82
537 538 4.082190 TGTTGTGACGAATTGGTTGGAAAA 60.082 37.500 0.00 0.00 0.00 2.29
551 552 5.817616 AGTAGTACGATTTTGTTGTGACG 57.182 39.130 0.00 0.00 0.00 4.35
553 554 8.786898 AGTAGTAGTAGTACGATTTTGTTGTGA 58.213 33.333 9.09 0.00 33.97 3.58
568 569 9.455847 CACGTTTCTGTTTTAAGTAGTAGTAGT 57.544 33.333 0.00 0.00 0.00 2.73
569 570 9.669353 TCACGTTTCTGTTTTAAGTAGTAGTAG 57.331 33.333 0.00 0.00 0.00 2.57
571 572 8.931385 TTCACGTTTCTGTTTTAAGTAGTAGT 57.069 30.769 0.00 0.00 0.00 2.73
572 573 9.793245 CATTCACGTTTCTGTTTTAAGTAGTAG 57.207 33.333 0.00 0.00 0.00 2.57
573 574 9.531942 TCATTCACGTTTCTGTTTTAAGTAGTA 57.468 29.630 0.00 0.00 0.00 1.82
574 575 8.428186 TCATTCACGTTTCTGTTTTAAGTAGT 57.572 30.769 0.00 0.00 0.00 2.73
575 576 9.155053 GTTCATTCACGTTTCTGTTTTAAGTAG 57.845 33.333 0.00 0.00 0.00 2.57
576 577 8.885722 AGTTCATTCACGTTTCTGTTTTAAGTA 58.114 29.630 0.00 0.00 0.00 2.24
577 578 7.758495 AGTTCATTCACGTTTCTGTTTTAAGT 58.242 30.769 0.00 0.00 0.00 2.24
578 579 8.614994 AAGTTCATTCACGTTTCTGTTTTAAG 57.385 30.769 0.00 0.00 0.00 1.85
579 580 8.855279 CAAAGTTCATTCACGTTTCTGTTTTAA 58.145 29.630 0.00 0.00 0.00 1.52
580 581 8.024285 ACAAAGTTCATTCACGTTTCTGTTTTA 58.976 29.630 0.00 0.00 0.00 1.52
677 678 9.968743 GGAAAGACGATTAGTTACAGTATTTTG 57.031 33.333 0.00 0.00 0.00 2.44
678 679 9.159364 GGGAAAGACGATTAGTTACAGTATTTT 57.841 33.333 0.00 0.00 0.00 1.82
679 680 7.767659 GGGGAAAGACGATTAGTTACAGTATTT 59.232 37.037 0.00 0.00 0.00 1.40
680 681 7.093201 TGGGGAAAGACGATTAGTTACAGTATT 60.093 37.037 0.00 0.00 0.00 1.89
681 682 6.381994 TGGGGAAAGACGATTAGTTACAGTAT 59.618 38.462 0.00 0.00 0.00 2.12
682 683 5.716228 TGGGGAAAGACGATTAGTTACAGTA 59.284 40.000 0.00 0.00 0.00 2.74
683 684 4.529377 TGGGGAAAGACGATTAGTTACAGT 59.471 41.667 0.00 0.00 0.00 3.55
684 685 5.080969 TGGGGAAAGACGATTAGTTACAG 57.919 43.478 0.00 0.00 0.00 2.74
685 686 5.687166 ATGGGGAAAGACGATTAGTTACA 57.313 39.130 0.00 0.00 0.00 2.41
686 687 6.481313 GGTAATGGGGAAAGACGATTAGTTAC 59.519 42.308 0.00 0.00 0.00 2.50
687 688 6.156602 TGGTAATGGGGAAAGACGATTAGTTA 59.843 38.462 0.00 0.00 0.00 2.24
688 689 5.045432 TGGTAATGGGGAAAGACGATTAGTT 60.045 40.000 0.00 0.00 0.00 2.24
689 690 4.472108 TGGTAATGGGGAAAGACGATTAGT 59.528 41.667 0.00 0.00 0.00 2.24
690 691 4.814771 GTGGTAATGGGGAAAGACGATTAG 59.185 45.833 0.00 0.00 0.00 1.73
691 692 4.384427 GGTGGTAATGGGGAAAGACGATTA 60.384 45.833 0.00 0.00 0.00 1.75
692 693 3.617284 GTGGTAATGGGGAAAGACGATT 58.383 45.455 0.00 0.00 0.00 3.34
693 694 2.092592 GGTGGTAATGGGGAAAGACGAT 60.093 50.000 0.00 0.00 0.00 3.73
694 695 1.279846 GGTGGTAATGGGGAAAGACGA 59.720 52.381 0.00 0.00 0.00 4.20
695 696 1.003812 TGGTGGTAATGGGGAAAGACG 59.996 52.381 0.00 0.00 0.00 4.18
696 697 2.307686 TCTGGTGGTAATGGGGAAAGAC 59.692 50.000 0.00 0.00 0.00 3.01
697 698 2.307686 GTCTGGTGGTAATGGGGAAAGA 59.692 50.000 0.00 0.00 0.00 2.52
698 699 2.723273 GTCTGGTGGTAATGGGGAAAG 58.277 52.381 0.00 0.00 0.00 2.62
699 700 1.003812 CGTCTGGTGGTAATGGGGAAA 59.996 52.381 0.00 0.00 0.00 3.13
700 701 0.616371 CGTCTGGTGGTAATGGGGAA 59.384 55.000 0.00 0.00 0.00 3.97
701 702 0.252330 TCGTCTGGTGGTAATGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
702 703 0.178068 CTCGTCTGGTGGTAATGGGG 59.822 60.000 0.00 0.00 0.00 4.96
703 704 0.178068 CCTCGTCTGGTGGTAATGGG 59.822 60.000 0.00 0.00 0.00 4.00
719 720 2.185608 GGGAACTGCTCTCGCCTC 59.814 66.667 0.00 0.00 34.43 4.70
730 731 2.659610 GCAGACGCAGAGGGAACT 59.340 61.111 0.00 0.00 40.78 3.01
731 732 2.811317 CGCAGACGCAGAGGGAAC 60.811 66.667 0.00 0.00 38.40 3.62
733 734 3.749064 GACGCAGACGCAGAGGGA 61.749 66.667 0.00 0.00 45.53 4.20
736 737 1.875813 GATGGACGCAGACGCAGAG 60.876 63.158 0.00 0.00 45.53 3.35
737 738 2.181777 GATGGACGCAGACGCAGA 59.818 61.111 0.00 0.00 45.53 4.26
738 739 2.887568 GGATGGACGCAGACGCAG 60.888 66.667 0.00 0.00 45.53 5.18
739 740 2.906182 GATGGATGGACGCAGACGCA 62.906 60.000 0.00 0.00 45.53 5.24
740 741 2.202932 ATGGATGGACGCAGACGC 60.203 61.111 0.00 0.00 45.53 5.19
742 743 1.506493 GATGATGGATGGACGCAGAC 58.494 55.000 0.00 0.00 0.00 3.51
743 744 0.394192 GGATGATGGATGGACGCAGA 59.606 55.000 0.00 0.00 0.00 4.26
745 746 1.069596 CGGATGATGGATGGACGCA 59.930 57.895 0.00 0.00 0.00 5.24
746 747 0.946221 GACGGATGATGGATGGACGC 60.946 60.000 0.00 0.00 0.00 5.19
747 748 0.664466 CGACGGATGATGGATGGACG 60.664 60.000 0.00 0.00 0.00 4.79
748 749 0.389391 ACGACGGATGATGGATGGAC 59.611 55.000 0.00 0.00 0.00 4.02
759 763 1.328430 GGGGGAAGAAGACGACGGAT 61.328 60.000 0.00 0.00 0.00 4.18
794 798 4.335647 GCGCGGATGGGATGGGAT 62.336 66.667 8.83 0.00 0.00 3.85
850 859 4.803908 GAAAGGCGGGGCAGAGGG 62.804 72.222 0.00 0.00 0.00 4.30
851 860 4.803908 GGAAAGGCGGGGCAGAGG 62.804 72.222 0.00 0.00 0.00 3.69
852 861 4.803908 GGGAAAGGCGGGGCAGAG 62.804 72.222 0.00 0.00 0.00 3.35
854 863 4.447342 ATGGGAAAGGCGGGGCAG 62.447 66.667 0.00 0.00 0.00 4.85
855 864 4.440829 GATGGGAAAGGCGGGGCA 62.441 66.667 0.00 0.00 0.00 5.36
858 867 4.794648 TGCGATGGGAAAGGCGGG 62.795 66.667 0.00 0.00 0.00 6.13
861 870 2.464459 CGTCTGCGATGGGAAAGGC 61.464 63.158 0.00 0.00 41.33 4.35
890 899 3.815569 GAGGATCGAGTCGCCTGCG 62.816 68.421 15.39 4.92 41.35 5.18
891 900 2.026879 GAGGATCGAGTCGCCTGC 59.973 66.667 15.39 7.29 30.70 4.85
892 901 1.652012 GAGAGGATCGAGTCGCCTG 59.348 63.158 15.39 0.00 42.67 4.85
893 902 1.527380 GGAGAGGATCGAGTCGCCT 60.527 63.158 11.02 11.02 42.67 5.52
894 903 2.557372 GGGAGAGGATCGAGTCGCC 61.557 68.421 7.92 4.18 42.67 5.54
895 904 1.512156 GAGGGAGAGGATCGAGTCGC 61.512 65.000 7.92 0.00 42.67 5.19
897 906 0.538746 GGGAGGGAGAGGATCGAGTC 60.539 65.000 0.00 0.00 42.67 3.36
898 907 0.996762 AGGGAGGGAGAGGATCGAGT 60.997 60.000 0.00 0.00 42.67 4.18
899 908 0.251165 GAGGGAGGGAGAGGATCGAG 60.251 65.000 0.00 0.00 42.67 4.04
900 909 1.721093 GGAGGGAGGGAGAGGATCGA 61.721 65.000 0.00 0.00 42.67 3.59
901 910 1.228737 GGAGGGAGGGAGAGGATCG 60.229 68.421 0.00 0.00 42.67 3.69
902 911 1.157513 GGGAGGGAGGGAGAGGATC 59.842 68.421 0.00 0.00 0.00 3.36
903 912 1.311371 AGGGAGGGAGGGAGAGGAT 60.311 63.158 0.00 0.00 0.00 3.24
904 913 2.015726 GAGGGAGGGAGGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
905 914 2.612251 GAGGGAGGGAGGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
906 915 2.612251 GGAGGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
907 916 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
908 917 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
909 918 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
915 924 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
919 928 3.742248 GACGAGGGAGGGAGGGAGG 62.742 73.684 0.00 0.00 0.00 4.30
925 934 1.727215 GGGATAGGACGAGGGAGGGA 61.727 65.000 0.00 0.00 0.00 4.20
930 939 2.180276 CTATTGGGGATAGGACGAGGG 58.820 57.143 0.00 0.00 35.14 4.30
955 964 0.511221 CGACAATCAAGAACGCGGTT 59.489 50.000 12.47 1.69 0.00 4.44
956 965 1.289109 CCGACAATCAAGAACGCGGT 61.289 55.000 12.47 1.91 33.14 5.68
958 967 1.419922 CCCGACAATCAAGAACGCG 59.580 57.895 3.53 3.53 0.00 6.01
959 968 1.134694 GCCCGACAATCAAGAACGC 59.865 57.895 0.00 0.00 0.00 4.84
1062 1080 2.026262 ACAAGAAATCTATGTGCGGGGT 60.026 45.455 0.00 0.00 0.00 4.95
1073 1091 2.290071 CCCGTACACCCACAAGAAATCT 60.290 50.000 0.00 0.00 0.00 2.40
1077 1095 0.763604 TCCCCGTACACCCACAAGAA 60.764 55.000 0.00 0.00 0.00 2.52
1078 1096 0.545787 ATCCCCGTACACCCACAAGA 60.546 55.000 0.00 0.00 0.00 3.02
1079 1097 0.326927 AATCCCCGTACACCCACAAG 59.673 55.000 0.00 0.00 0.00 3.16
1082 1100 1.271488 TGAAAATCCCCGTACACCCAC 60.271 52.381 0.00 0.00 0.00 4.61
1083 1101 1.065647 TGAAAATCCCCGTACACCCA 58.934 50.000 0.00 0.00 0.00 4.51
1084 1102 1.456296 GTGAAAATCCCCGTACACCC 58.544 55.000 0.00 0.00 0.00 4.61
1085 1103 1.081094 CGTGAAAATCCCCGTACACC 58.919 55.000 0.00 0.00 0.00 4.16
1086 1104 1.081094 CCGTGAAAATCCCCGTACAC 58.919 55.000 0.00 0.00 0.00 2.90
1087 1105 0.674269 GCCGTGAAAATCCCCGTACA 60.674 55.000 0.00 0.00 0.00 2.90
1089 1107 1.448189 CGCCGTGAAAATCCCCGTA 60.448 57.895 0.00 0.00 0.00 4.02
1090 1108 2.744709 CGCCGTGAAAATCCCCGT 60.745 61.111 0.00 0.00 0.00 5.28
1091 1109 3.505184 CCGCCGTGAAAATCCCCG 61.505 66.667 0.00 0.00 0.00 5.73
1112 1136 0.324943 ACCGGAAACACAGATCAGGG 59.675 55.000 9.46 0.00 35.52 4.45
1122 1146 1.202359 GCAAAGAAAGCACCGGAAACA 60.202 47.619 9.46 0.00 0.00 2.83
1123 1147 1.202359 TGCAAAGAAAGCACCGGAAAC 60.202 47.619 9.46 0.00 37.02 2.78
1127 1151 1.172180 TCCTGCAAAGAAAGCACCGG 61.172 55.000 0.00 0.00 37.02 5.28
1129 1153 1.888512 TCATCCTGCAAAGAAAGCACC 59.111 47.619 0.00 0.00 37.02 5.01
1130 1154 3.192001 TCATCATCCTGCAAAGAAAGCAC 59.808 43.478 0.00 0.00 37.02 4.40
1131 1155 3.423749 TCATCATCCTGCAAAGAAAGCA 58.576 40.909 0.00 0.00 40.19 3.91
1132 1156 3.734293 GCTCATCATCCTGCAAAGAAAGC 60.734 47.826 0.00 0.00 0.00 3.51
1133 1157 3.487042 CGCTCATCATCCTGCAAAGAAAG 60.487 47.826 0.00 0.00 0.00 2.62
1134 1158 2.421073 CGCTCATCATCCTGCAAAGAAA 59.579 45.455 0.00 0.00 0.00 2.52
1136 1160 1.207811 TCGCTCATCATCCTGCAAAGA 59.792 47.619 0.00 0.00 0.00 2.52
1137 1161 1.329906 GTCGCTCATCATCCTGCAAAG 59.670 52.381 0.00 0.00 0.00 2.77
1138 1162 1.065926 AGTCGCTCATCATCCTGCAAA 60.066 47.619 0.00 0.00 0.00 3.68
1139 1163 0.538584 AGTCGCTCATCATCCTGCAA 59.461 50.000 0.00 0.00 0.00 4.08
1140 1164 1.067669 GTAGTCGCTCATCATCCTGCA 59.932 52.381 0.00 0.00 0.00 4.41
1218 1242 1.516603 GCGGGCACGTACTCTCTTC 60.517 63.158 11.45 0.00 43.45 2.87
1231 1258 0.166161 GAAGAAGAAGAAACGCGGGC 59.834 55.000 12.47 0.00 0.00 6.13
1234 1261 5.388578 GGTTCTAAGAAGAAGAAGAAACGCG 60.389 44.000 3.53 3.53 42.40 6.01
1238 1265 8.774586 CAAATCGGTTCTAAGAAGAAGAAGAAA 58.225 33.333 0.00 0.00 42.40 2.52
1251 1278 5.116180 AGCGAATCATCAAATCGGTTCTAA 58.884 37.500 0.00 0.00 43.88 2.10
1252 1279 4.693283 AGCGAATCATCAAATCGGTTCTA 58.307 39.130 0.00 0.00 43.88 2.10
1253 1280 3.535561 AGCGAATCATCAAATCGGTTCT 58.464 40.909 0.00 0.00 43.88 3.01
1258 1285 5.401033 AGAAGAAGCGAATCATCAAATCG 57.599 39.130 0.00 0.00 39.47 3.34
1259 1286 5.430462 CGAGAAGAAGCGAATCATCAAATC 58.570 41.667 0.00 0.00 0.00 2.17
1261 1288 3.062639 GCGAGAAGAAGCGAATCATCAAA 59.937 43.478 0.00 0.00 0.00 2.69
1262 1289 2.604914 GCGAGAAGAAGCGAATCATCAA 59.395 45.455 0.00 0.00 0.00 2.57
1263 1290 2.196749 GCGAGAAGAAGCGAATCATCA 58.803 47.619 0.00 0.00 0.00 3.07
1265 1292 1.137872 AGGCGAGAAGAAGCGAATCAT 59.862 47.619 0.00 0.00 0.00 2.45
1290 1334 5.519808 TCTAGATTCAGAAACCAGAGGCTA 58.480 41.667 0.00 0.00 0.00 3.93
1323 1367 6.754702 TCTCGAAACTTGTGCTAGTAGTAT 57.245 37.500 0.00 0.00 0.00 2.12
1324 1368 6.754702 ATCTCGAAACTTGTGCTAGTAGTA 57.245 37.500 0.00 0.00 0.00 1.82
1325 1369 5.646577 ATCTCGAAACTTGTGCTAGTAGT 57.353 39.130 0.00 0.00 0.00 2.73
1326 1370 6.035112 GGAAATCTCGAAACTTGTGCTAGTAG 59.965 42.308 0.00 0.00 0.00 2.57
1327 1371 5.867716 GGAAATCTCGAAACTTGTGCTAGTA 59.132 40.000 0.00 0.00 0.00 1.82
1328 1372 4.691216 GGAAATCTCGAAACTTGTGCTAGT 59.309 41.667 0.00 0.00 0.00 2.57
1329 1373 4.932200 AGGAAATCTCGAAACTTGTGCTAG 59.068 41.667 0.00 0.00 0.00 3.42
1330 1374 4.894784 AGGAAATCTCGAAACTTGTGCTA 58.105 39.130 0.00 0.00 0.00 3.49
1354 1398 5.176590 GCTAAATCGGTAGAATGAGCAGAAG 59.823 44.000 0.00 0.00 32.08 2.85
1362 1432 5.176590 GCTCTTGAGCTAAATCGGTAGAATG 59.823 44.000 14.65 0.00 0.00 2.67
1363 1433 5.163405 TGCTCTTGAGCTAAATCGGTAGAAT 60.163 40.000 21.17 0.00 35.49 2.40
1380 1450 5.161358 TCTATATATTCGGCGTTGCTCTTG 58.839 41.667 6.85 0.00 0.00 3.02
1385 1455 5.340803 TGAGATCTATATATTCGGCGTTGC 58.659 41.667 6.85 0.00 0.00 4.17
1397 1467 8.700644 GCGACGTTAAAACATTGAGATCTATAT 58.299 33.333 0.00 0.00 0.00 0.86
1398 1468 7.919091 AGCGACGTTAAAACATTGAGATCTATA 59.081 33.333 0.00 0.00 0.00 1.31
1399 1469 6.757010 AGCGACGTTAAAACATTGAGATCTAT 59.243 34.615 0.00 0.00 0.00 1.98
1400 1470 6.034577 CAGCGACGTTAAAACATTGAGATCTA 59.965 38.462 0.00 0.00 0.00 1.98
1410 1480 0.584396 CTGCCAGCGACGTTAAAACA 59.416 50.000 0.00 0.00 0.00 2.83
1422 1492 3.756727 GCAAGGGAAGCTGCCAGC 61.757 66.667 14.44 9.13 42.84 4.85
1423 1493 1.681327 ATGCAAGGGAAGCTGCCAG 60.681 57.895 14.44 2.54 37.79 4.85
1424 1494 1.980232 CATGCAAGGGAAGCTGCCA 60.980 57.895 14.44 0.00 37.79 4.92
1425 1495 1.538687 AACATGCAAGGGAAGCTGCC 61.539 55.000 0.16 0.16 37.79 4.85
1426 1496 0.389426 CAACATGCAAGGGAAGCTGC 60.389 55.000 0.00 0.00 39.09 5.25
1427 1497 1.068055 GTCAACATGCAAGGGAAGCTG 60.068 52.381 0.00 0.00 0.00 4.24
1428 1498 1.251251 GTCAACATGCAAGGGAAGCT 58.749 50.000 0.00 0.00 0.00 3.74
1430 1500 0.109597 GCGTCAACATGCAAGGGAAG 60.110 55.000 0.00 0.00 34.29 3.46
1433 1503 1.526575 AAGGCGTCAACATGCAAGGG 61.527 55.000 0.00 0.00 36.08 3.95
1435 1505 2.855180 CTAAAGGCGTCAACATGCAAG 58.145 47.619 0.00 0.00 36.08 4.01
1456 1533 8.261492 ACATAATCACTGAAGCTTAACAAGAG 57.739 34.615 0.00 0.00 0.00 2.85
1458 1535 9.334693 GAAACATAATCACTGAAGCTTAACAAG 57.665 33.333 0.00 0.00 0.00 3.16
1459 1536 8.296713 GGAAACATAATCACTGAAGCTTAACAA 58.703 33.333 0.00 0.00 0.00 2.83
1484 1561 2.592102 ATATTGCTGGGCTGGTATGG 57.408 50.000 0.00 0.00 0.00 2.74
1493 1570 5.368256 GCAACTCATCTTATATTGCTGGG 57.632 43.478 0.00 0.00 41.88 4.45
1497 1574 8.019669 CCATTGTAGCAACTCATCTTATATTGC 58.980 37.037 0.00 0.00 44.74 3.56
1517 1594 1.202855 AGAGCAGCAGTCAACCATTGT 60.203 47.619 0.00 0.00 0.00 2.71
1520 1597 0.689055 TGAGAGCAGCAGTCAACCAT 59.311 50.000 0.00 0.00 0.00 3.55
1528 1609 0.535797 TCCATCACTGAGAGCAGCAG 59.464 55.000 0.00 0.00 46.26 4.24
1686 1767 6.154203 AGCATGAATACTGAATTCGAGAGA 57.846 37.500 0.00 1.41 46.03 3.10
1687 1768 5.981915 TGAGCATGAATACTGAATTCGAGAG 59.018 40.000 0.00 1.65 46.03 3.20
1693 1778 5.664457 TCGACTGAGCATGAATACTGAATT 58.336 37.500 0.00 0.00 0.00 2.17
1741 1829 6.942976 CCACAAGTGGTTAGGAAATACTAGA 58.057 40.000 11.08 0.00 45.53 2.43
1912 2000 1.071605 CAACAACCGTAGAGCTCTGC 58.928 55.000 26.78 23.65 0.00 4.26
1913 2001 2.440539 ACAACAACCGTAGAGCTCTG 57.559 50.000 26.78 12.23 0.00 3.35
1935 2025 5.239306 CAGTTGCAAGGTTAGAAGATTGTCA 59.761 40.000 0.00 0.00 0.00 3.58
2009 2101 7.555965 AGGGATTTGGATATAACAAAAGTTGC 58.444 34.615 8.58 0.51 40.74 4.17
2048 2140 1.004080 GAGTGCAGCAGCTTCTCCA 60.004 57.895 1.76 0.00 42.74 3.86
2145 2237 9.612620 GCGTAAAGATAATCCAATGGATAAAAG 57.387 33.333 16.10 2.24 42.27 2.27
2443 2536 2.786700 GCTTTCACGCCGCTTTATGTAC 60.787 50.000 0.00 0.00 0.00 2.90
2493 2586 5.428184 AACCTATCCAAAAGAGGTCTCTG 57.572 43.478 0.77 0.00 42.93 3.35
2555 2648 2.096248 ACTGAACGCCCAAAAGAACAA 58.904 42.857 0.00 0.00 0.00 2.83
2633 2726 2.292521 TGGGTCTGAAGCCTACTCAGAT 60.293 50.000 5.87 0.00 43.82 2.90
2754 2847 7.277098 ACCATACACAAGTTATAACTACGCAAG 59.723 37.037 18.31 8.29 38.57 4.01
2824 2917 5.180271 CCAGGTCAAATTTTATGCAGCAAT 58.820 37.500 0.00 0.00 0.00 3.56
2830 2923 2.931969 GCAGCCAGGTCAAATTTTATGC 59.068 45.455 0.00 0.00 0.00 3.14
2881 2974 6.365518 TGCACAAACAATATGCATACAAGTTG 59.634 34.615 8.99 11.92 44.17 3.16
2966 3067 0.698818 ACCAAACACCCCCTCTCATC 59.301 55.000 0.00 0.00 0.00 2.92
2971 3072 1.603739 GCTGACCAAACACCCCCTC 60.604 63.158 0.00 0.00 0.00 4.30
2972 3073 1.729267 ATGCTGACCAAACACCCCCT 61.729 55.000 0.00 0.00 0.00 4.79
3057 3168 0.601558 TGCTTGTACAGACCGTCTCC 59.398 55.000 0.00 0.00 0.00 3.71
3062 3173 0.033504 ACAGGTGCTTGTACAGACCG 59.966 55.000 12.60 10.72 33.39 4.79
3078 6574 3.921119 TTTCTAGCAAACATGCCACAG 57.079 42.857 0.00 0.00 34.90 3.66
3091 6587 3.244044 TGGGTTTTGGCATGTTTTCTAGC 60.244 43.478 0.00 0.00 0.00 3.42
3106 6602 9.332502 GTATTGTTTCTTGGTTATTTGGGTTTT 57.667 29.630 0.00 0.00 0.00 2.43
3119 6615 8.028938 CAGGATAAAACCAGTATTGTTTCTTGG 58.971 37.037 0.00 0.00 34.97 3.61
3310 6806 3.063997 CGAATAAAGCAAAGCGTCTCCAT 59.936 43.478 0.00 0.00 0.00 3.41
3339 6835 7.124298 AGCTACATGACTAATGACTAAGAACCA 59.876 37.037 0.00 0.00 38.72 3.67
3347 6843 9.890629 TTTGATTTAGCTACATGACTAATGACT 57.109 29.630 0.00 0.00 38.72 3.41
3348 6844 9.922305 GTTTGATTTAGCTACATGACTAATGAC 57.078 33.333 0.00 1.09 38.72 3.06
3349 6845 9.890629 AGTTTGATTTAGCTACATGACTAATGA 57.109 29.630 0.00 0.00 38.72 2.57
3388 6884 6.035368 AGTTCTGCGCTCAATATATCAGAT 57.965 37.500 9.73 0.00 31.64 2.90
3398 6894 1.673923 CCTGATGAGTTCTGCGCTCAA 60.674 52.381 9.73 0.00 44.82 3.02
3436 6935 5.265350 TGATCCAACAAACATGCATATGG 57.735 39.130 0.00 1.83 38.66 2.74
3437 6936 6.763303 CATGATCCAACAAACATGCATATG 57.237 37.500 0.00 0.00 40.24 1.78
3458 6957 1.853963 AGTACCACGGAAGAGAGCAT 58.146 50.000 0.00 0.00 0.00 3.79
3651 7150 1.344763 CGGAGAAACAGGTCCTGAACT 59.655 52.381 26.18 18.77 35.18 3.01
3652 7151 1.608283 CCGGAGAAACAGGTCCTGAAC 60.608 57.143 26.18 14.70 35.18 3.18
3654 7153 1.827399 GCCGGAGAAACAGGTCCTGA 61.827 60.000 26.18 0.00 36.26 3.86
3663 7162 1.344226 GCAAATTGCGCCGGAGAAAC 61.344 55.000 10.31 0.00 31.71 2.78
3674 7173 4.660105 ACAAAACATTGTGTGCAAATTGC 58.340 34.783 11.58 11.58 38.21 3.56
3680 7179 2.671888 CTGCAACAAAACATTGTGTGCA 59.328 40.909 19.91 19.91 41.65 4.57
3734 7233 0.333993 ATGGCATTCAGACTTGGGCT 59.666 50.000 0.00 0.00 0.00 5.19
3735 7234 0.458669 CATGGCATTCAGACTTGGGC 59.541 55.000 0.00 0.00 0.00 5.36
3781 7280 2.644798 ACTGAGGCTGGAGGTAACATTT 59.355 45.455 0.00 0.00 41.41 2.32
3844 7343 1.388768 TGTTTTCGATCGATGACGCAC 59.611 47.619 20.18 9.76 39.58 5.34
3849 7348 5.666969 AACAACTTGTTTTCGATCGATGA 57.333 34.783 20.18 8.16 37.26 2.92
3924 7423 3.904136 ATTTCACCAGAAAACAGCTCG 57.096 42.857 0.00 0.00 46.06 5.03
3936 7436 0.960364 GGAGCGCAGGAATTTCACCA 60.960 55.000 11.47 0.00 0.00 4.17
3963 7463 7.661536 ACTTATAGTGTTCATTCAGCTAGGA 57.338 36.000 0.00 0.00 0.00 2.94
3972 7472 6.892658 TTGCACCAACTTATAGTGTTCATT 57.107 33.333 0.00 0.00 33.96 2.57
4107 7607 9.507329 AAGACTTATTTGATGTTGTACATGTCT 57.493 29.630 0.00 0.02 39.27 3.41
4108 7608 9.760660 GAAGACTTATTTGATGTTGTACATGTC 57.239 33.333 0.00 0.00 39.27 3.06
4158 7658 5.494724 ACCAACCATATATAGCATGAGCAG 58.505 41.667 0.00 0.00 45.49 4.24
4161 7661 7.609146 ACATCAACCAACCATATATAGCATGAG 59.391 37.037 0.00 0.00 0.00 2.90
4166 7666 7.744087 TCAACATCAACCAACCATATATAGC 57.256 36.000 0.00 0.00 0.00 2.97
4219 7719 9.567848 TTGTTCTAACTCAAACATTTGAAGTTC 57.432 29.630 17.65 0.00 45.61 3.01
4294 7798 3.950397 TGGAGGCGTAGAAATTCAACAT 58.050 40.909 0.00 0.00 0.00 2.71
4403 7913 0.031585 CGTCAGTCTCCAAACGACCA 59.968 55.000 0.00 0.00 37.31 4.02
4404 7914 0.666577 CCGTCAGTCTCCAAACGACC 60.667 60.000 0.00 0.00 37.31 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.