Multiple sequence alignment - TraesCS4A01G413900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G413900 chr4A 100.000 4532 0 0 584 5115 684619934 684615403 0.000000e+00 8370.0
1 TraesCS4A01G413900 chr4A 100.000 191 0 0 1 191 684620517 684620327 2.270000e-93 353.0
2 TraesCS4A01G413900 chr4A 85.185 108 16 0 5008 5115 6033382 6033489 1.510000e-20 111.0
3 TraesCS4A01G413900 chr4A 83.654 104 16 1 5012 5115 11622711 11622813 4.220000e-16 97.1
4 TraesCS4A01G413900 chr4D 89.876 3941 277 42 584 4427 477918941 477915026 0.000000e+00 4955.0
5 TraesCS4A01G413900 chr4D 78.589 411 54 25 4577 4979 477914856 477914472 1.840000e-59 241.0
6 TraesCS4A01G413900 chr4D 89.655 116 11 1 5000 5115 477914485 477914371 4.130000e-31 147.0
7 TraesCS4A01G413900 chr4D 88.991 109 10 2 5008 5115 463402581 463402474 3.210000e-27 134.0
8 TraesCS4A01G413900 chr4D 85.577 104 14 1 5012 5115 456124486 456124384 1.950000e-19 108.0
9 TraesCS4A01G413900 chr4B 90.227 3172 235 39 1299 4420 604148675 604145529 0.000000e+00 4071.0
10 TraesCS4A01G413900 chr4B 91.483 317 27 0 991 1307 604149175 604148859 2.190000e-118 436.0
11 TraesCS4A01G413900 chr4B 84.545 110 13 4 5008 5115 579390833 579390726 7.000000e-19 106.0
12 TraesCS4A01G413900 chr7B 94.155 2053 105 12 843 2889 706482787 706484830 0.000000e+00 3112.0
13 TraesCS4A01G413900 chr7B 86.380 1094 78 35 3271 4342 706484878 706485922 0.000000e+00 1129.0
14 TraesCS4A01G413900 chr7B 92.742 124 6 3 4358 4478 706486095 706486218 5.260000e-40 176.0
15 TraesCS4A01G413900 chr7B 91.089 101 7 1 4478 4576 31807495 31807595 8.930000e-28 135.0
16 TraesCS4A01G413900 chr2D 91.089 101 7 1 4478 4576 632685939 632686039 8.930000e-28 135.0
17 TraesCS4A01G413900 chr7D 88.991 109 10 1 4478 4584 227806243 227806135 3.210000e-27 134.0
18 TraesCS4A01G413900 chr7D 88.785 107 6 5 4478 4580 230907597 230907493 5.380000e-25 126.0
19 TraesCS4A01G413900 chr5B 88.991 109 10 1 4478 4584 595634418 595634526 3.210000e-27 134.0
20 TraesCS4A01G413900 chr3B 88.991 109 10 1 4478 4584 619229213 619229105 3.210000e-27 134.0
21 TraesCS4A01G413900 chr6B 90.099 101 8 1 4478 4576 639676 639576 4.160000e-26 130.0
22 TraesCS4A01G413900 chr6B 100.000 28 0 0 5088 5115 118968617 118968590 9.000000e-03 52.8
23 TraesCS4A01G413900 chr1B 89.524 105 8 2 4478 4579 242176083 242176187 4.160000e-26 130.0
24 TraesCS4A01G413900 chr1B 86.607 112 12 2 4478 4586 426854690 426854801 2.500000e-23 121.0
25 TraesCS4A01G413900 chr6D 89.796 98 7 2 4476 4571 56790707 56790803 6.950000e-24 122.0
26 TraesCS4A01G413900 chrUn 84.259 108 17 0 5008 5115 23717084 23717191 7.000000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G413900 chr4A 684615403 684620517 5114 True 4361.500000 8370 100.000000 1 5115 2 chr4A.!!$R1 5114
1 TraesCS4A01G413900 chr4D 477914371 477918941 4570 True 1781.000000 4955 86.040000 584 5115 3 chr4D.!!$R3 4531
2 TraesCS4A01G413900 chr4B 604145529 604149175 3646 True 2253.500000 4071 90.855000 991 4420 2 chr4B.!!$R2 3429
3 TraesCS4A01G413900 chr7B 706482787 706486218 3431 False 1472.333333 3112 91.092333 843 4478 3 chr7B.!!$F2 3635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.032678 AGCCCATTAGCTGATCGTCG 59.967 55.000 0.00 0.0 42.95 5.12 F
642 643 0.468226 TCCGGCAGGTGACATATTCC 59.532 55.000 1.81 0.0 39.05 3.01 F
1177 1236 0.463295 CGCCTGCCATTCTCATCTGT 60.463 55.000 0.00 0.0 0.00 3.41 F
1980 2237 1.131126 CTGAGGCAATGCTGTTAACCG 59.869 52.381 4.82 0.0 0.00 4.44 F
3253 3545 0.179073 ACTTGCGACACAGAAGCAGT 60.179 50.000 0.00 0.0 42.19 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1166 0.174845 TACTCCATGCCCGAGAAACG 59.825 55.000 4.68 0.0 42.18 3.60 R
1953 2210 0.674895 AGCATTGCCTCAGGACGAAC 60.675 55.000 4.70 0.0 0.00 3.95 R
2462 2720 1.268539 CGTGAACCAGCAGAACCAAAC 60.269 52.381 0.00 0.0 0.00 2.93 R
3760 4065 0.310854 GTGAAACCTTGCCCAGTTCG 59.689 55.000 0.00 0.0 0.00 3.95 R
4188 4493 0.110238 CTGTCAATTCCGCAACCACG 60.110 55.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.835819 GCCCTAAAATTCAGAAACCTTACT 57.164 37.500 0.00 0.00 0.00 2.24
24 25 7.933215 GCCCTAAAATTCAGAAACCTTACTA 57.067 36.000 0.00 0.00 0.00 1.82
25 26 7.759465 GCCCTAAAATTCAGAAACCTTACTAC 58.241 38.462 0.00 0.00 0.00 2.73
26 27 7.148120 GCCCTAAAATTCAGAAACCTTACTACC 60.148 40.741 0.00 0.00 0.00 3.18
27 28 7.886446 CCCTAAAATTCAGAAACCTTACTACCA 59.114 37.037 0.00 0.00 0.00 3.25
28 29 9.292195 CCTAAAATTCAGAAACCTTACTACCAA 57.708 33.333 0.00 0.00 0.00 3.67
30 31 8.528044 AAAATTCAGAAACCTTACTACCAACA 57.472 30.769 0.00 0.00 0.00 3.33
31 32 8.706322 AAATTCAGAAACCTTACTACCAACAT 57.294 30.769 0.00 0.00 0.00 2.71
32 33 7.923414 ATTCAGAAACCTTACTACCAACATC 57.077 36.000 0.00 0.00 0.00 3.06
33 34 6.681729 TCAGAAACCTTACTACCAACATCT 57.318 37.500 0.00 0.00 0.00 2.90
34 35 7.074653 TCAGAAACCTTACTACCAACATCTT 57.925 36.000 0.00 0.00 0.00 2.40
35 36 6.934645 TCAGAAACCTTACTACCAACATCTTG 59.065 38.462 0.00 0.00 0.00 3.02
36 37 6.710744 CAGAAACCTTACTACCAACATCTTGT 59.289 38.462 0.00 0.00 0.00 3.16
37 38 7.228706 CAGAAACCTTACTACCAACATCTTGTT 59.771 37.037 0.00 0.00 42.08 2.83
38 39 7.778382 AGAAACCTTACTACCAACATCTTGTTT 59.222 33.333 0.00 0.00 38.77 2.83
39 40 7.891498 AACCTTACTACCAACATCTTGTTTT 57.109 32.000 0.00 0.00 38.77 2.43
40 41 7.506328 ACCTTACTACCAACATCTTGTTTTC 57.494 36.000 0.00 0.00 38.77 2.29
41 42 6.489022 ACCTTACTACCAACATCTTGTTTTCC 59.511 38.462 0.00 0.00 38.77 3.13
42 43 6.715264 CCTTACTACCAACATCTTGTTTTCCT 59.285 38.462 0.00 0.00 38.77 3.36
43 44 7.881232 CCTTACTACCAACATCTTGTTTTCCTA 59.119 37.037 0.00 0.00 38.77 2.94
44 45 8.611654 TTACTACCAACATCTTGTTTTCCTAC 57.388 34.615 0.00 0.00 38.77 3.18
45 46 6.002082 ACTACCAACATCTTGTTTTCCTACC 58.998 40.000 0.00 0.00 38.77 3.18
46 47 4.149598 ACCAACATCTTGTTTTCCTACCC 58.850 43.478 0.00 0.00 38.77 3.69
47 48 4.141018 ACCAACATCTTGTTTTCCTACCCT 60.141 41.667 0.00 0.00 38.77 4.34
48 49 4.218417 CCAACATCTTGTTTTCCTACCCTG 59.782 45.833 0.00 0.00 38.77 4.45
49 50 3.421844 ACATCTTGTTTTCCTACCCTGC 58.578 45.455 0.00 0.00 0.00 4.85
50 51 3.181434 ACATCTTGTTTTCCTACCCTGCA 60.181 43.478 0.00 0.00 0.00 4.41
51 52 3.586470 TCTTGTTTTCCTACCCTGCAA 57.414 42.857 0.00 0.00 0.00 4.08
52 53 3.904717 TCTTGTTTTCCTACCCTGCAAA 58.095 40.909 0.00 0.00 0.00 3.68
53 54 4.282496 TCTTGTTTTCCTACCCTGCAAAA 58.718 39.130 0.00 0.00 0.00 2.44
54 55 4.712337 TCTTGTTTTCCTACCCTGCAAAAA 59.288 37.500 0.00 0.00 0.00 1.94
55 56 4.664150 TGTTTTCCTACCCTGCAAAAAG 57.336 40.909 0.00 0.00 0.00 2.27
56 57 4.282496 TGTTTTCCTACCCTGCAAAAAGA 58.718 39.130 0.00 0.00 0.00 2.52
57 58 4.712337 TGTTTTCCTACCCTGCAAAAAGAA 59.288 37.500 0.00 0.00 0.00 2.52
58 59 4.929819 TTTCCTACCCTGCAAAAAGAAC 57.070 40.909 0.00 0.00 0.00 3.01
59 60 3.586470 TCCTACCCTGCAAAAAGAACA 57.414 42.857 0.00 0.00 0.00 3.18
60 61 3.219281 TCCTACCCTGCAAAAAGAACAC 58.781 45.455 0.00 0.00 0.00 3.32
61 62 2.296190 CCTACCCTGCAAAAAGAACACC 59.704 50.000 0.00 0.00 0.00 4.16
62 63 1.119684 ACCCTGCAAAAAGAACACCC 58.880 50.000 0.00 0.00 0.00 4.61
63 64 1.118838 CCCTGCAAAAAGAACACCCA 58.881 50.000 0.00 0.00 0.00 4.51
64 65 1.069049 CCCTGCAAAAAGAACACCCAG 59.931 52.381 0.00 0.00 0.00 4.45
65 66 1.756538 CCTGCAAAAAGAACACCCAGT 59.243 47.619 0.00 0.00 0.00 4.00
66 67 2.168313 CCTGCAAAAAGAACACCCAGTT 59.832 45.455 0.00 0.00 44.93 3.16
67 68 3.369366 CCTGCAAAAAGAACACCCAGTTT 60.369 43.478 0.00 0.00 41.51 2.66
68 69 4.252878 CTGCAAAAAGAACACCCAGTTTT 58.747 39.130 0.00 0.00 41.51 2.43
69 70 4.249661 TGCAAAAAGAACACCCAGTTTTC 58.750 39.130 0.00 0.00 41.51 2.29
70 71 3.621268 GCAAAAAGAACACCCAGTTTTCC 59.379 43.478 0.00 0.00 41.51 3.13
71 72 4.622933 GCAAAAAGAACACCCAGTTTTCCT 60.623 41.667 0.00 0.00 41.51 3.36
72 73 5.394773 GCAAAAAGAACACCCAGTTTTCCTA 60.395 40.000 0.00 0.00 41.51 2.94
73 74 6.635755 CAAAAAGAACACCCAGTTTTCCTAA 58.364 36.000 0.00 0.00 41.51 2.69
74 75 5.847111 AAAGAACACCCAGTTTTCCTAAC 57.153 39.130 0.00 0.00 41.51 2.34
75 76 4.513406 AGAACACCCAGTTTTCCTAACA 57.487 40.909 0.00 0.00 41.51 2.41
76 77 4.204799 AGAACACCCAGTTTTCCTAACAC 58.795 43.478 0.00 0.00 41.51 3.32
77 78 3.655615 ACACCCAGTTTTCCTAACACA 57.344 42.857 0.00 0.00 0.00 3.72
78 79 4.178956 ACACCCAGTTTTCCTAACACAT 57.821 40.909 0.00 0.00 0.00 3.21
79 80 3.888930 ACACCCAGTTTTCCTAACACATG 59.111 43.478 0.00 0.00 0.00 3.21
80 81 3.255642 CACCCAGTTTTCCTAACACATGG 59.744 47.826 0.00 0.00 0.00 3.66
81 82 3.139397 ACCCAGTTTTCCTAACACATGGA 59.861 43.478 0.00 0.00 0.00 3.41
82 83 3.506067 CCCAGTTTTCCTAACACATGGAC 59.494 47.826 0.00 0.00 31.24 4.02
83 84 4.141287 CCAGTTTTCCTAACACATGGACA 58.859 43.478 0.00 0.00 31.24 4.02
84 85 4.216257 CCAGTTTTCCTAACACATGGACAG 59.784 45.833 0.00 0.00 31.24 3.51
85 86 3.821033 AGTTTTCCTAACACATGGACAGC 59.179 43.478 0.00 0.00 31.24 4.40
86 87 2.489938 TTCCTAACACATGGACAGCC 57.510 50.000 0.00 0.00 31.24 4.85
87 88 0.618458 TCCTAACACATGGACAGCCC 59.382 55.000 0.00 0.00 0.00 5.19
101 102 3.997672 AGCCCATTAGCTGATCGTC 57.002 52.632 0.00 0.00 42.95 4.20
102 103 0.032678 AGCCCATTAGCTGATCGTCG 59.967 55.000 0.00 0.00 42.95 5.12
103 104 0.946221 GCCCATTAGCTGATCGTCGG 60.946 60.000 0.00 0.00 0.00 4.79
104 105 0.673985 CCCATTAGCTGATCGTCGGA 59.326 55.000 0.00 0.00 0.00 4.55
105 106 1.273606 CCCATTAGCTGATCGTCGGAT 59.726 52.381 0.00 0.00 34.96 4.18
115 116 3.712091 GATCGTCGGATCCAACTAACT 57.288 47.619 13.41 0.00 42.72 2.24
116 117 4.043037 GATCGTCGGATCCAACTAACTT 57.957 45.455 13.41 0.00 42.72 2.66
117 118 3.947910 TCGTCGGATCCAACTAACTTT 57.052 42.857 13.41 0.00 0.00 2.66
118 119 3.581755 TCGTCGGATCCAACTAACTTTG 58.418 45.455 13.41 0.00 0.00 2.77
119 120 3.006110 TCGTCGGATCCAACTAACTTTGT 59.994 43.478 13.41 0.00 0.00 2.83
120 121 3.122948 CGTCGGATCCAACTAACTTTGTG 59.877 47.826 13.41 0.00 0.00 3.33
121 122 3.071479 TCGGATCCAACTAACTTTGTGC 58.929 45.455 13.41 0.00 0.00 4.57
122 123 3.074412 CGGATCCAACTAACTTTGTGCT 58.926 45.455 13.41 0.00 0.00 4.40
123 124 3.125316 CGGATCCAACTAACTTTGTGCTC 59.875 47.826 13.41 0.00 0.00 4.26
124 125 4.327680 GGATCCAACTAACTTTGTGCTCT 58.672 43.478 6.95 0.00 0.00 4.09
125 126 4.762251 GGATCCAACTAACTTTGTGCTCTT 59.238 41.667 6.95 0.00 0.00 2.85
126 127 5.335191 GGATCCAACTAACTTTGTGCTCTTG 60.335 44.000 6.95 0.00 0.00 3.02
127 128 4.776349 TCCAACTAACTTTGTGCTCTTGA 58.224 39.130 0.00 0.00 0.00 3.02
128 129 5.376625 TCCAACTAACTTTGTGCTCTTGAT 58.623 37.500 0.00 0.00 0.00 2.57
129 130 5.470098 TCCAACTAACTTTGTGCTCTTGATC 59.530 40.000 0.00 0.00 0.00 2.92
130 131 5.239306 CCAACTAACTTTGTGCTCTTGATCA 59.761 40.000 0.00 0.00 0.00 2.92
131 132 5.931441 ACTAACTTTGTGCTCTTGATCAC 57.069 39.130 0.00 0.00 0.00 3.06
132 133 3.885484 AACTTTGTGCTCTTGATCACG 57.115 42.857 0.00 0.00 36.06 4.35
133 134 2.146342 ACTTTGTGCTCTTGATCACGG 58.854 47.619 0.00 0.00 36.06 4.94
134 135 0.874390 TTTGTGCTCTTGATCACGGC 59.126 50.000 0.00 0.54 36.06 5.68
135 136 1.291184 TTGTGCTCTTGATCACGGCG 61.291 55.000 4.80 4.80 36.06 6.46
136 137 1.446099 GTGCTCTTGATCACGGCGA 60.446 57.895 16.62 0.00 0.00 5.54
137 138 1.446099 TGCTCTTGATCACGGCGAC 60.446 57.895 16.62 2.37 0.00 5.19
138 139 1.446099 GCTCTTGATCACGGCGACA 60.446 57.895 16.62 5.28 0.00 4.35
139 140 0.807667 GCTCTTGATCACGGCGACAT 60.808 55.000 16.62 4.12 0.00 3.06
140 141 1.203928 CTCTTGATCACGGCGACATC 58.796 55.000 16.62 14.60 0.00 3.06
141 142 0.817654 TCTTGATCACGGCGACATCT 59.182 50.000 16.62 0.00 0.00 2.90
142 143 2.021457 TCTTGATCACGGCGACATCTA 58.979 47.619 16.62 10.07 0.00 1.98
143 144 2.623416 TCTTGATCACGGCGACATCTAT 59.377 45.455 16.62 0.00 0.00 1.98
144 145 2.422276 TGATCACGGCGACATCTATG 57.578 50.000 16.62 0.00 0.00 2.23
145 146 1.000274 TGATCACGGCGACATCTATGG 60.000 52.381 16.62 0.00 0.00 2.74
146 147 1.000163 GATCACGGCGACATCTATGGT 60.000 52.381 16.62 0.00 0.00 3.55
147 148 0.821517 TCACGGCGACATCTATGGTT 59.178 50.000 16.62 0.00 0.00 3.67
148 149 1.202371 TCACGGCGACATCTATGGTTC 60.202 52.381 16.62 0.00 0.00 3.62
149 150 0.821517 ACGGCGACATCTATGGTTCA 59.178 50.000 16.62 0.00 0.00 3.18
150 151 1.412710 ACGGCGACATCTATGGTTCAT 59.587 47.619 16.62 0.00 0.00 2.57
151 152 2.061773 CGGCGACATCTATGGTTCATC 58.938 52.381 0.00 0.00 0.00 2.92
152 153 2.417719 GGCGACATCTATGGTTCATCC 58.582 52.381 0.00 0.00 0.00 3.51
642 643 0.468226 TCCGGCAGGTGACATATTCC 59.532 55.000 1.81 0.00 39.05 3.01
643 644 0.469917 CCGGCAGGTGACATATTCCT 59.530 55.000 0.00 0.00 0.00 3.36
651 652 5.053145 CAGGTGACATATTCCTTGACTAGC 58.947 45.833 0.00 0.00 0.00 3.42
799 836 1.497722 CTTTCAGCCGCCGTTTCTC 59.502 57.895 0.00 0.00 0.00 2.87
1020 1079 2.176792 GCTTGTGCGGCTTACAGC 59.823 61.111 0.00 0.00 41.46 4.40
1071 1130 2.307098 GCCTGGCCTGGATAGTAATCAT 59.693 50.000 31.43 0.00 33.41 2.45
1104 1163 0.955919 GGAAGCCTTCGGTGTCTTGG 60.956 60.000 0.00 0.00 0.00 3.61
1107 1166 2.359975 CCTTCGGTGTCTTGGCCC 60.360 66.667 0.00 0.00 0.00 5.80
1177 1236 0.463295 CGCCTGCCATTCTCATCTGT 60.463 55.000 0.00 0.00 0.00 3.41
1396 1648 6.040054 TGCCCAAAACCTTTCTTCTAGTTAAC 59.960 38.462 0.00 0.00 0.00 2.01
1571 1827 2.052104 AGTTTTATGCGCCCCTGGC 61.052 57.895 4.18 0.00 46.75 4.85
1644 1900 4.456911 ACATTTCCAGTAGTGATGCTGTTG 59.543 41.667 0.00 0.00 0.00 3.33
1784 2040 1.527844 GGCTGCAGCATTAGAGGGG 60.528 63.158 37.63 0.00 44.36 4.79
1980 2237 1.131126 CTGAGGCAATGCTGTTAACCG 59.869 52.381 4.82 0.00 0.00 4.44
2004 2261 4.447054 TGTTTATTTTGTGCCGATTTGCTG 59.553 37.500 0.00 0.00 0.00 4.41
2039 2297 4.763793 ACAGAAGCTATGCAATGAACTGTT 59.236 37.500 0.00 0.00 33.29 3.16
2232 2490 9.871238 TTGATACTCCTCTTTGTTGATACTTAC 57.129 33.333 0.00 0.00 0.00 2.34
2291 2549 8.726988 GCTAATACCAGTACTCTTCTCTCTATG 58.273 40.741 0.00 0.00 0.00 2.23
2343 2601 6.710295 TGCAAAAGCTAAAGAGTACATCAAGA 59.290 34.615 0.00 0.00 0.00 3.02
2438 2696 2.019984 GATGAGGCCTTCGAAGCAATT 58.980 47.619 19.99 4.62 0.00 2.32
2462 2720 3.065510 ACTCTATGATGGTTGACGAGTCG 59.934 47.826 11.85 11.85 0.00 4.18
2543 2801 7.050377 CCTCTTTCTTTGCATTAGTAGATGGA 58.950 38.462 0.00 0.00 0.00 3.41
2591 2849 4.136796 CACAGGATCACAAAAGAGTTGGA 58.863 43.478 0.00 0.00 0.00 3.53
2621 2879 3.292159 GGTCCAAACACGGGTGGC 61.292 66.667 0.00 0.00 34.68 5.01
2741 2999 2.101249 AGGATGCAAGTTTGTTGGTGTG 59.899 45.455 0.00 0.00 0.00 3.82
2816 3074 5.240623 TGAATATAATGTGCGATTTGGGGAC 59.759 40.000 0.00 0.00 0.00 4.46
2848 3106 5.395768 GCCAGGTTAGTGATTATCTGTCAGT 60.396 44.000 0.00 0.00 33.95 3.41
2850 3108 7.106239 CCAGGTTAGTGATTATCTGTCAGTTT 58.894 38.462 0.00 0.00 31.94 2.66
2930 3200 9.837525 GTATGATCAAAATATTCTTGATGAGGC 57.162 33.333 20.76 12.29 42.27 4.70
2960 3231 9.524106 ACAATATCACAATAGAATGCAATGTTG 57.476 29.630 0.00 0.00 0.00 3.33
2974 3245 3.319122 GCAATGTTGTTGAACTCCTTCCT 59.681 43.478 0.00 0.00 32.79 3.36
2980 3251 2.038033 TGTTGAACTCCTTCCTAACGGG 59.962 50.000 0.00 0.00 0.00 5.28
3009 3287 4.721776 TCCTCATACTTGCCCTAATGAAGT 59.278 41.667 0.00 0.00 34.36 3.01
3013 3291 6.349300 TCATACTTGCCCTAATGAAGTTCTC 58.651 40.000 4.17 0.00 32.27 2.87
3051 3333 9.733556 TTTAGTGATGCCTTAATAAAGTTCTCA 57.266 29.630 0.00 0.00 0.00 3.27
3053 3335 8.218338 AGTGATGCCTTAATAAAGTTCTCATG 57.782 34.615 0.00 0.00 0.00 3.07
3059 3344 8.677300 TGCCTTAATAAAGTTCTCATGCTTTAG 58.323 33.333 8.56 0.00 39.55 1.85
3077 3364 5.238650 GCTTTAGAGCTTGTTGGTTAAGTGA 59.761 40.000 0.00 0.00 45.65 3.41
3082 3369 7.112452 AGAGCTTGTTGGTTAAGTGATTTTT 57.888 32.000 0.00 0.00 0.00 1.94
3120 3410 4.100035 AGTCTATGACATGAGAAATCGGCA 59.900 41.667 0.00 0.00 34.60 5.69
3155 3445 4.507710 TCTTGTAGAATGTGCTCATGTCC 58.492 43.478 1.29 0.00 34.19 4.02
3160 3450 5.711506 TGTAGAATGTGCTCATGTCCAAAAT 59.288 36.000 1.29 0.00 34.19 1.82
3167 3457 7.643569 TGTGCTCATGTCCAAAATAATGTAT 57.356 32.000 0.00 0.00 0.00 2.29
3192 3482 4.521130 TGTAACAGAGTGAGTGCCTTAG 57.479 45.455 0.00 0.00 0.00 2.18
3201 3491 3.019564 GTGAGTGCCTTAGAAATGCCAT 58.980 45.455 0.00 0.00 0.00 4.40
3218 3509 4.713553 TGCCATCTGAACTTTGTGTCTTA 58.286 39.130 0.00 0.00 0.00 2.10
3228 3520 8.450578 TGAACTTTGTGTCTTATTCTCATGTT 57.549 30.769 0.00 0.00 0.00 2.71
3242 3534 5.530519 TCTCATGTTCATTTACTTGCGAC 57.469 39.130 0.00 0.00 0.00 5.19
3246 3538 4.466567 TGTTCATTTACTTGCGACACAG 57.533 40.909 0.00 0.00 0.00 3.66
3252 3544 1.783284 TACTTGCGACACAGAAGCAG 58.217 50.000 0.00 0.00 42.19 4.24
3253 3545 0.179073 ACTTGCGACACAGAAGCAGT 60.179 50.000 0.00 0.00 42.19 4.40
3254 3546 0.234106 CTTGCGACACAGAAGCAGTG 59.766 55.000 0.00 0.00 42.19 3.66
3257 3549 1.858041 CGACACAGAAGCAGTGCAG 59.142 57.895 19.20 6.61 40.59 4.41
3277 3569 1.601412 GCCTGCTTTTGTTCACTGCTC 60.601 52.381 0.00 0.00 0.00 4.26
3299 3591 6.530019 TCAAGCTTTCTTCTTTTGGAACTT 57.470 33.333 0.00 0.00 0.00 2.66
3303 3595 5.105187 AGCTTTCTTCTTTTGGAACTTGCTT 60.105 36.000 0.00 0.00 0.00 3.91
3306 3598 3.701040 TCTTCTTTTGGAACTTGCTTGCT 59.299 39.130 0.00 0.00 0.00 3.91
3322 3614 9.933723 ACTTGCTTGCTATTTATTTCTTCAATT 57.066 25.926 0.00 0.00 0.00 2.32
3336 3628 4.517285 TCTTCAATTATCTGTGCCACCTC 58.483 43.478 0.00 0.00 0.00 3.85
3353 3648 4.520492 CCACCTCTTGCTGTTCTATTGTTT 59.480 41.667 0.00 0.00 0.00 2.83
3384 3679 5.186996 TCCAGAAGTTCAGTCAATTTTGC 57.813 39.130 5.50 0.00 0.00 3.68
3483 3783 2.352651 CACAGTTCAGTCCAATATGCCG 59.647 50.000 0.00 0.00 0.00 5.69
3558 3859 9.720667 TTTTGAAAATTATCACATGAGCTATCG 57.279 29.630 0.00 0.00 0.00 2.92
3568 3869 3.118992 ACATGAGCTATCGTGCTTCTGAA 60.119 43.478 0.00 0.00 44.91 3.02
3579 3880 3.494626 CGTGCTTCTGAAGTACACAACAT 59.505 43.478 29.33 0.00 43.27 2.71
3581 3882 5.176774 CGTGCTTCTGAAGTACACAACATAA 59.823 40.000 29.33 0.00 43.27 1.90
3583 3884 7.017645 GTGCTTCTGAAGTACACAACATAATG 58.982 38.462 26.80 0.00 42.73 1.90
3591 3896 7.329962 TGAAGTACACAACATAATGTCTTACCG 59.670 37.037 0.00 0.00 0.00 4.02
3597 3902 6.806249 CACAACATAATGTCTTACCGCATTTT 59.194 34.615 0.00 0.00 36.75 1.82
3600 3905 9.009327 CAACATAATGTCTTACCGCATTTTTAG 57.991 33.333 0.00 0.00 36.75 1.85
3640 3945 9.280174 TCTCCTAGTTTACCTGTTTACATTTTG 57.720 33.333 0.00 0.00 0.00 2.44
3641 3946 8.983702 TCCTAGTTTACCTGTTTACATTTTGT 57.016 30.769 0.00 0.00 0.00 2.83
3649 3954 7.841915 ACCTGTTTACATTTTGTTTTTCCAG 57.158 32.000 0.00 0.00 0.00 3.86
3652 3957 7.148340 CCTGTTTACATTTTGTTTTTCCAGCAA 60.148 33.333 0.00 0.00 0.00 3.91
3668 3973 1.815003 AGCAAATTCTGGCTGTACTGC 59.185 47.619 15.79 15.79 39.30 4.40
3669 3974 1.541147 GCAAATTCTGGCTGTACTGCA 59.459 47.619 23.89 10.84 34.04 4.41
3670 3975 2.030007 GCAAATTCTGGCTGTACTGCAA 60.030 45.455 23.89 13.82 34.04 4.08
3672 3977 4.142403 GCAAATTCTGGCTGTACTGCAATA 60.142 41.667 23.89 5.15 34.04 1.90
3673 3978 5.622007 GCAAATTCTGGCTGTACTGCAATAA 60.622 40.000 23.89 13.52 34.04 1.40
3674 3979 6.567050 CAAATTCTGGCTGTACTGCAATAAT 58.433 36.000 23.89 15.04 34.04 1.28
3678 3983 7.880160 TTCTGGCTGTACTGCAATAATTTAT 57.120 32.000 23.89 0.00 34.04 1.40
3680 3985 8.972458 TCTGGCTGTACTGCAATAATTTATTA 57.028 30.769 23.89 0.00 34.04 0.98
3681 3986 9.402320 TCTGGCTGTACTGCAATAATTTATTAA 57.598 29.630 23.89 0.00 34.04 1.40
3704 4009 3.976015 TCCTTTCCTTTGTGTCAGGTTT 58.024 40.909 0.00 0.00 32.59 3.27
3736 4041 3.490439 TTGGAGTCTGATCTTGCACAA 57.510 42.857 0.00 0.00 0.00 3.33
3760 4065 2.323580 GCTATCCGCATGCAGAGGC 61.324 63.158 19.57 15.86 37.08 4.70
3778 4083 1.452145 GCGAACTGGGCAAGGTTTCA 61.452 55.000 0.00 0.00 0.00 2.69
3850 4155 6.151049 AGGATACCCTGGCTCTTATAAGAAA 58.849 40.000 15.85 4.67 42.42 2.52
4018 4323 1.244697 AAGAAGCGAGGTCGAGAGCA 61.245 55.000 2.94 0.00 43.02 4.26
4117 4422 2.094649 GCAGACGGCTAACTACTGACTT 60.095 50.000 0.00 0.00 40.25 3.01
4188 4493 4.792521 AGACAGTAGAGTCACCATTGTC 57.207 45.455 0.00 0.35 40.98 3.18
4244 4557 3.484229 CCGTCGAACATGAGCATCTTTTC 60.484 47.826 0.00 0.00 34.92 2.29
4252 4565 3.159213 TGAGCATCTTTTCACCATGGT 57.841 42.857 13.00 13.00 34.92 3.55
4330 4643 7.692460 TTGTCAAGTGCAATTATCTCTTGAT 57.308 32.000 18.80 0.00 42.35 2.57
4479 4955 0.974383 GAGGAGGGAGAACACCGAAA 59.026 55.000 0.00 0.00 0.00 3.46
4482 4958 3.178865 AGGAGGGAGAACACCGAAATAA 58.821 45.455 0.00 0.00 0.00 1.40
4483 4959 3.197983 AGGAGGGAGAACACCGAAATAAG 59.802 47.826 0.00 0.00 0.00 1.73
4484 4960 3.055312 GGAGGGAGAACACCGAAATAAGT 60.055 47.826 0.00 0.00 0.00 2.24
4485 4961 3.933332 GAGGGAGAACACCGAAATAAGTG 59.067 47.826 0.00 0.00 39.93 3.16
4486 4962 3.581332 AGGGAGAACACCGAAATAAGTGA 59.419 43.478 0.00 0.00 37.43 3.41
4489 4965 5.064834 GGGAGAACACCGAAATAAGTGAATC 59.935 44.000 0.00 0.00 37.43 2.52
4490 4966 5.875359 GGAGAACACCGAAATAAGTGAATCT 59.125 40.000 0.00 0.00 36.84 2.40
4494 4970 6.963049 ACACCGAAATAAGTGAATCTACAC 57.037 37.500 0.00 0.00 40.60 2.90
4528 5004 9.533831 TGTCTACATACATCCATATGTGATAGT 57.466 33.333 8.36 7.78 45.99 2.12
4530 5006 9.190317 TCTACATACATCCATATGTGATAGTCC 57.810 37.037 8.36 0.00 45.99 3.85
4531 5007 7.797121 ACATACATCCATATGTGATAGTCCA 57.203 36.000 1.24 0.00 45.99 4.02
4533 5009 8.829746 ACATACATCCATATGTGATAGTCCATT 58.170 33.333 1.24 0.00 45.99 3.16
4534 5010 9.676861 CATACATCCATATGTGATAGTCCATTT 57.323 33.333 1.24 0.00 45.99 2.32
4535 5011 7.991084 ACATCCATATGTGATAGTCCATTTG 57.009 36.000 1.24 0.00 44.79 2.32
4536 5012 6.944290 ACATCCATATGTGATAGTCCATTTGG 59.056 38.462 1.24 0.00 44.79 3.28
4537 5013 6.762077 TCCATATGTGATAGTCCATTTGGA 57.238 37.500 1.24 7.45 42.86 3.53
4538 5014 7.666804 CATCCATATGTGATAGTCCATTTGGAA 59.333 37.037 13.29 0.00 45.75 3.53
4554 5030 9.672673 TCCATTTGGAATGTTTAAAAAGACAAA 57.327 25.926 0.00 7.12 42.18 2.83
4570 5046 9.908152 AAAAAGACAAATATTTAAGAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
4571 5047 8.857694 AAAGACAAATATTTAAGAACGGAGGA 57.142 30.769 0.00 0.00 0.00 3.71
4572 5048 8.857694 AAGACAAATATTTAAGAACGGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
4573 5049 8.494016 AGACAAATATTTAAGAACGGAGGAAG 57.506 34.615 0.00 0.00 0.00 3.46
4575 5051 9.374838 GACAAATATTTAAGAACGGAGGAAGTA 57.625 33.333 0.00 0.00 0.00 2.24
4616 5109 2.163509 TCTAGTATGCATCCTCGCCTC 58.836 52.381 0.19 0.00 0.00 4.70
4621 5114 0.681733 ATGCATCCTCGCCTCGTATT 59.318 50.000 0.00 0.00 0.00 1.89
4632 5129 3.430895 TCGCCTCGTATTGTTTGAAAGTC 59.569 43.478 0.00 0.00 0.00 3.01
4637 5134 3.185594 TCGTATTGTTTGAAAGTCGCTGG 59.814 43.478 0.00 0.00 0.00 4.85
4645 5142 5.106078 TGTTTGAAAGTCGCTGGTTTTAACT 60.106 36.000 0.00 0.00 0.00 2.24
4661 5158 5.789643 TTTAACTGTGAAGTAGTACCGGT 57.210 39.130 13.98 13.98 0.00 5.28
4662 5159 3.655276 AACTGTGAAGTAGTACCGGTG 57.345 47.619 19.93 0.00 0.00 4.94
4708 5205 9.981114 AACAAAAGAAAATAGTGTAAAGGGATG 57.019 29.630 0.00 0.00 0.00 3.51
4709 5206 8.088365 ACAAAAGAAAATAGTGTAAAGGGATGC 58.912 33.333 0.00 0.00 0.00 3.91
4710 5207 6.775594 AAGAAAATAGTGTAAAGGGATGCC 57.224 37.500 0.00 0.00 0.00 4.40
4711 5208 5.826643 AGAAAATAGTGTAAAGGGATGCCA 58.173 37.500 5.86 0.00 0.00 4.92
4712 5209 5.888161 AGAAAATAGTGTAAAGGGATGCCAG 59.112 40.000 5.86 0.00 0.00 4.85
4713 5210 4.862641 AATAGTGTAAAGGGATGCCAGT 57.137 40.909 5.86 0.00 0.00 4.00
4714 5211 2.496899 AGTGTAAAGGGATGCCAGTG 57.503 50.000 5.86 0.00 0.00 3.66
4715 5212 1.004745 AGTGTAAAGGGATGCCAGTGG 59.995 52.381 5.86 4.20 0.00 4.00
4727 5224 2.594303 CAGTGGTGGCGGCTGAAA 60.594 61.111 11.43 0.00 32.39 2.69
4734 5231 1.000843 GGTGGCGGCTGAAAGAAATTT 59.999 47.619 11.43 0.00 34.07 1.82
4742 5239 5.234116 GCGGCTGAAAGAAATTTCTCAAAAA 59.766 36.000 20.71 5.26 36.28 1.94
4743 5240 6.073602 GCGGCTGAAAGAAATTTCTCAAAAAT 60.074 34.615 20.71 1.55 36.28 1.82
4771 5268 5.671493 AGTATGGGTGTCTAGATTTTTCCG 58.329 41.667 0.00 0.00 0.00 4.30
4772 5269 4.569719 ATGGGTGTCTAGATTTTTCCGT 57.430 40.909 0.00 0.00 0.00 4.69
4777 5274 5.121925 GGGTGTCTAGATTTTTCCGTTTCTC 59.878 44.000 0.00 0.00 0.00 2.87
4846 5343 3.771577 AAAGTCTGGACGAAGGACATT 57.228 42.857 0.00 0.00 36.20 2.71
4847 5344 3.771577 AAGTCTGGACGAAGGACATTT 57.228 42.857 0.00 0.00 36.20 2.32
4848 5345 3.045601 AGTCTGGACGAAGGACATTTG 57.954 47.619 0.00 0.00 36.20 2.32
4849 5346 1.464997 GTCTGGACGAAGGACATTTGC 59.535 52.381 0.00 0.00 0.00 3.68
4851 5348 2.154462 CTGGACGAAGGACATTTGCTT 58.846 47.619 0.00 0.00 35.80 3.91
4852 5349 1.879380 TGGACGAAGGACATTTGCTTG 59.121 47.619 0.00 0.00 32.64 4.01
4853 5350 1.401539 GGACGAAGGACATTTGCTTGC 60.402 52.381 0.00 0.00 32.64 4.01
4876 5394 0.678950 GCTCACTAGCCCATCTCTCC 59.321 60.000 0.00 0.00 43.40 3.71
4893 5411 3.696548 CTCTCCTGGGCTTTTATTCAACC 59.303 47.826 0.00 0.00 0.00 3.77
4937 5455 1.738099 CCTCCCAGAGCAACGAACG 60.738 63.158 0.00 0.00 0.00 3.95
4947 5467 1.618640 GCAACGAACGGAGCAGAGTC 61.619 60.000 0.00 0.00 0.00 3.36
4978 5498 1.212616 GCGCAGAGCTATCATTTCGT 58.787 50.000 0.30 0.00 44.04 3.85
4979 5499 2.394708 GCGCAGAGCTATCATTTCGTA 58.605 47.619 0.30 0.00 44.04 3.43
4980 5500 2.406691 GCGCAGAGCTATCATTTCGTAG 59.593 50.000 0.30 0.00 44.04 3.51
4981 5501 2.406691 CGCAGAGCTATCATTTCGTAGC 59.593 50.000 0.00 0.00 42.77 3.58
4982 5502 3.384668 GCAGAGCTATCATTTCGTAGCA 58.615 45.455 7.09 0.00 44.41 3.49
4983 5503 3.183373 GCAGAGCTATCATTTCGTAGCAC 59.817 47.826 7.09 1.17 44.41 4.40
4984 5504 4.615949 CAGAGCTATCATTTCGTAGCACT 58.384 43.478 7.09 3.34 44.41 4.40
4985 5505 4.679197 CAGAGCTATCATTTCGTAGCACTC 59.321 45.833 7.09 0.00 44.41 3.51
4986 5506 4.339530 AGAGCTATCATTTCGTAGCACTCA 59.660 41.667 7.09 0.00 44.41 3.41
4987 5507 5.011090 AGCTATCATTTCGTAGCACTCAA 57.989 39.130 7.09 0.00 44.41 3.02
4988 5508 5.419542 AGCTATCATTTCGTAGCACTCAAA 58.580 37.500 7.09 0.00 44.41 2.69
4989 5509 5.874810 AGCTATCATTTCGTAGCACTCAAAA 59.125 36.000 7.09 0.00 44.41 2.44
4990 5510 6.371548 AGCTATCATTTCGTAGCACTCAAAAA 59.628 34.615 7.09 0.00 44.41 1.94
5025 5545 6.093633 GCTATCATTTCGTTTAGTTCCACCTT 59.906 38.462 0.00 0.00 0.00 3.50
5056 5576 2.646175 CGGAAGGGAGGCGAAGACA 61.646 63.158 0.00 0.00 39.87 3.41
5057 5577 1.908483 GGAAGGGAGGCGAAGACAT 59.092 57.895 0.00 0.00 39.87 3.06
5068 5588 5.078411 AGGCGAAGACATGCTATATAAGG 57.922 43.478 0.00 0.00 39.87 2.69
5069 5589 4.772624 AGGCGAAGACATGCTATATAAGGA 59.227 41.667 0.00 0.00 39.87 3.36
5083 5603 2.121963 AGGAGACCCTTGCCACCA 60.122 61.111 0.00 0.00 40.78 4.17
5084 5604 1.774217 AGGAGACCCTTGCCACCAA 60.774 57.895 0.00 0.00 40.78 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.835819 AGTAAGGTTTCTGAATTTTAGGGC 57.164 37.500 0.00 0.00 0.00 5.19
1 2 7.886446 TGGTAGTAAGGTTTCTGAATTTTAGGG 59.114 37.037 0.00 0.00 0.00 3.53
2 3 8.857694 TGGTAGTAAGGTTTCTGAATTTTAGG 57.142 34.615 0.00 0.00 0.00 2.69
4 5 9.629878 TGTTGGTAGTAAGGTTTCTGAATTTTA 57.370 29.630 0.00 0.00 0.00 1.52
9 10 7.074653 AGATGTTGGTAGTAAGGTTTCTGAA 57.925 36.000 0.00 0.00 0.00 3.02
10 11 6.681729 AGATGTTGGTAGTAAGGTTTCTGA 57.318 37.500 0.00 0.00 0.00 3.27
11 12 6.710744 ACAAGATGTTGGTAGTAAGGTTTCTG 59.289 38.462 7.59 0.00 38.07 3.02
12 13 6.838382 ACAAGATGTTGGTAGTAAGGTTTCT 58.162 36.000 7.59 0.00 38.07 2.52
13 14 7.506328 AACAAGATGTTGGTAGTAAGGTTTC 57.494 36.000 7.59 0.00 39.45 2.78
14 15 7.891498 AAACAAGATGTTGGTAGTAAGGTTT 57.109 32.000 7.59 0.00 40.14 3.27
18 19 7.745620 AGGAAAACAAGATGTTGGTAGTAAG 57.254 36.000 7.59 0.00 40.14 2.34
19 20 7.662669 GGTAGGAAAACAAGATGTTGGTAGTAA 59.337 37.037 7.59 0.00 40.14 2.24
20 21 7.163441 GGTAGGAAAACAAGATGTTGGTAGTA 58.837 38.462 7.59 0.00 40.14 1.82
21 22 6.002082 GGTAGGAAAACAAGATGTTGGTAGT 58.998 40.000 7.59 0.00 40.14 2.73
22 23 5.414765 GGGTAGGAAAACAAGATGTTGGTAG 59.585 44.000 7.59 0.00 40.14 3.18
23 24 5.073965 AGGGTAGGAAAACAAGATGTTGGTA 59.926 40.000 7.59 0.00 40.14 3.25
24 25 4.141018 AGGGTAGGAAAACAAGATGTTGGT 60.141 41.667 7.59 0.00 40.14 3.67
25 26 4.218417 CAGGGTAGGAAAACAAGATGTTGG 59.782 45.833 7.59 0.00 40.14 3.77
26 27 4.321230 GCAGGGTAGGAAAACAAGATGTTG 60.321 45.833 0.13 0.13 40.14 3.33
27 28 3.826729 GCAGGGTAGGAAAACAAGATGTT 59.173 43.478 0.00 0.00 43.41 2.71
28 29 3.181434 TGCAGGGTAGGAAAACAAGATGT 60.181 43.478 0.00 0.00 0.00 3.06
29 30 3.420893 TGCAGGGTAGGAAAACAAGATG 58.579 45.455 0.00 0.00 0.00 2.90
30 31 3.806949 TGCAGGGTAGGAAAACAAGAT 57.193 42.857 0.00 0.00 0.00 2.40
31 32 3.586470 TTGCAGGGTAGGAAAACAAGA 57.414 42.857 0.00 0.00 0.00 3.02
32 33 4.664150 TTTTGCAGGGTAGGAAAACAAG 57.336 40.909 0.00 0.00 34.53 3.16
33 34 4.712337 TCTTTTTGCAGGGTAGGAAAACAA 59.288 37.500 0.00 0.00 38.31 2.83
34 35 4.282496 TCTTTTTGCAGGGTAGGAAAACA 58.718 39.130 0.00 0.00 38.31 2.83
35 36 4.929819 TCTTTTTGCAGGGTAGGAAAAC 57.070 40.909 0.00 0.00 38.31 2.43
36 37 4.712337 TGTTCTTTTTGCAGGGTAGGAAAA 59.288 37.500 0.00 0.00 37.10 2.29
37 38 4.098807 GTGTTCTTTTTGCAGGGTAGGAAA 59.901 41.667 0.00 0.00 0.00 3.13
38 39 3.634910 GTGTTCTTTTTGCAGGGTAGGAA 59.365 43.478 0.00 0.00 0.00 3.36
39 40 3.219281 GTGTTCTTTTTGCAGGGTAGGA 58.781 45.455 0.00 0.00 0.00 2.94
40 41 2.296190 GGTGTTCTTTTTGCAGGGTAGG 59.704 50.000 0.00 0.00 0.00 3.18
41 42 2.296190 GGGTGTTCTTTTTGCAGGGTAG 59.704 50.000 0.00 0.00 0.00 3.18
42 43 2.312390 GGGTGTTCTTTTTGCAGGGTA 58.688 47.619 0.00 0.00 0.00 3.69
43 44 1.119684 GGGTGTTCTTTTTGCAGGGT 58.880 50.000 0.00 0.00 0.00 4.34
44 45 1.069049 CTGGGTGTTCTTTTTGCAGGG 59.931 52.381 0.00 0.00 0.00 4.45
45 46 1.756538 ACTGGGTGTTCTTTTTGCAGG 59.243 47.619 0.00 0.00 0.00 4.85
46 47 3.525268 AACTGGGTGTTCTTTTTGCAG 57.475 42.857 0.00 0.00 32.63 4.41
47 48 3.971245 AAACTGGGTGTTCTTTTTGCA 57.029 38.095 0.00 0.00 38.03 4.08
48 49 3.621268 GGAAAACTGGGTGTTCTTTTTGC 59.379 43.478 1.40 0.00 38.03 3.68
49 50 5.084818 AGGAAAACTGGGTGTTCTTTTTG 57.915 39.130 1.40 0.00 38.03 2.44
50 51 6.211785 TGTTAGGAAAACTGGGTGTTCTTTTT 59.788 34.615 1.40 0.00 38.03 1.94
51 52 5.717654 TGTTAGGAAAACTGGGTGTTCTTTT 59.282 36.000 1.40 0.00 38.03 2.27
52 53 5.126545 GTGTTAGGAAAACTGGGTGTTCTTT 59.873 40.000 1.40 0.00 38.03 2.52
53 54 4.643334 GTGTTAGGAAAACTGGGTGTTCTT 59.357 41.667 1.40 0.00 38.03 2.52
54 55 4.204799 GTGTTAGGAAAACTGGGTGTTCT 58.795 43.478 1.40 0.00 38.03 3.01
55 56 3.949113 TGTGTTAGGAAAACTGGGTGTTC 59.051 43.478 0.00 0.00 38.03 3.18
56 57 3.970842 TGTGTTAGGAAAACTGGGTGTT 58.029 40.909 0.00 0.00 41.29 3.32
57 58 3.655615 TGTGTTAGGAAAACTGGGTGT 57.344 42.857 0.00 0.00 0.00 4.16
58 59 3.255642 CCATGTGTTAGGAAAACTGGGTG 59.744 47.826 0.00 0.00 0.00 4.61
59 60 3.139397 TCCATGTGTTAGGAAAACTGGGT 59.861 43.478 0.00 0.00 0.00 4.51
60 61 3.506067 GTCCATGTGTTAGGAAAACTGGG 59.494 47.826 0.00 0.00 35.29 4.45
61 62 4.141287 TGTCCATGTGTTAGGAAAACTGG 58.859 43.478 0.00 0.00 35.29 4.00
62 63 4.320494 GCTGTCCATGTGTTAGGAAAACTG 60.320 45.833 0.00 0.00 35.29 3.16
63 64 3.821033 GCTGTCCATGTGTTAGGAAAACT 59.179 43.478 0.00 0.00 35.29 2.66
64 65 3.057526 GGCTGTCCATGTGTTAGGAAAAC 60.058 47.826 0.00 0.00 35.29 2.43
65 66 3.153919 GGCTGTCCATGTGTTAGGAAAA 58.846 45.455 0.00 0.00 35.29 2.29
66 67 2.554344 GGGCTGTCCATGTGTTAGGAAA 60.554 50.000 0.00 0.00 35.29 3.13
67 68 1.004277 GGGCTGTCCATGTGTTAGGAA 59.996 52.381 0.00 0.00 35.29 3.36
68 69 0.618458 GGGCTGTCCATGTGTTAGGA 59.382 55.000 0.00 0.00 35.00 2.94
69 70 0.327924 TGGGCTGTCCATGTGTTAGG 59.672 55.000 0.00 0.00 41.46 2.69
70 71 3.955145 TGGGCTGTCCATGTGTTAG 57.045 52.632 0.00 0.00 41.46 2.34
83 84 0.032678 CGACGATCAGCTAATGGGCT 59.967 55.000 0.00 0.00 44.10 5.19
84 85 0.946221 CCGACGATCAGCTAATGGGC 60.946 60.000 0.00 0.00 0.00 5.36
85 86 0.673985 TCCGACGATCAGCTAATGGG 59.326 55.000 0.00 0.00 0.00 4.00
86 87 2.600731 GATCCGACGATCAGCTAATGG 58.399 52.381 0.00 0.00 43.87 3.16
87 88 2.029918 TGGATCCGACGATCAGCTAATG 60.030 50.000 7.39 0.00 45.89 1.90
88 89 2.239400 TGGATCCGACGATCAGCTAAT 58.761 47.619 7.39 0.00 45.89 1.73
89 90 1.687563 TGGATCCGACGATCAGCTAA 58.312 50.000 7.39 0.00 45.89 3.09
90 91 1.337071 GTTGGATCCGACGATCAGCTA 59.663 52.381 16.58 0.00 45.89 3.32
91 92 0.103208 GTTGGATCCGACGATCAGCT 59.897 55.000 16.58 0.00 45.89 4.24
92 93 0.103208 AGTTGGATCCGACGATCAGC 59.897 55.000 23.85 1.13 45.89 4.26
93 94 3.066900 AGTTAGTTGGATCCGACGATCAG 59.933 47.826 23.85 0.00 45.89 2.90
94 95 3.021695 AGTTAGTTGGATCCGACGATCA 58.978 45.455 23.85 9.93 45.89 2.92
95 96 3.712091 AGTTAGTTGGATCCGACGATC 57.288 47.619 23.85 18.01 43.73 3.69
96 97 4.181578 CAAAGTTAGTTGGATCCGACGAT 58.818 43.478 23.85 12.06 35.57 3.73
97 98 3.006110 ACAAAGTTAGTTGGATCCGACGA 59.994 43.478 23.85 17.64 35.57 4.20
98 99 3.122948 CACAAAGTTAGTTGGATCCGACG 59.877 47.826 23.85 11.92 35.57 5.12
99 100 3.120304 GCACAAAGTTAGTTGGATCCGAC 60.120 47.826 22.97 22.97 32.50 4.79
100 101 3.071479 GCACAAAGTTAGTTGGATCCGA 58.929 45.455 7.39 1.27 32.50 4.55
101 102 3.074412 AGCACAAAGTTAGTTGGATCCG 58.926 45.455 7.39 0.00 32.50 4.18
102 103 4.327680 AGAGCACAAAGTTAGTTGGATCC 58.672 43.478 4.20 4.20 32.50 3.36
103 104 5.470098 TCAAGAGCACAAAGTTAGTTGGATC 59.530 40.000 0.00 0.00 32.50 3.36
104 105 5.376625 TCAAGAGCACAAAGTTAGTTGGAT 58.623 37.500 0.00 0.00 32.50 3.41
105 106 4.776349 TCAAGAGCACAAAGTTAGTTGGA 58.224 39.130 0.00 0.00 32.50 3.53
106 107 5.239306 TGATCAAGAGCACAAAGTTAGTTGG 59.761 40.000 0.00 0.00 32.50 3.77
107 108 6.138761 GTGATCAAGAGCACAAAGTTAGTTG 58.861 40.000 13.06 0.00 46.12 3.16
108 109 6.305693 GTGATCAAGAGCACAAAGTTAGTT 57.694 37.500 13.06 0.00 46.12 2.24
109 110 5.931441 GTGATCAAGAGCACAAAGTTAGT 57.069 39.130 13.06 0.00 46.12 2.24
118 119 1.446099 TCGCCGTGATCAAGAGCAC 60.446 57.895 10.47 8.32 43.66 4.40
119 120 1.446099 GTCGCCGTGATCAAGAGCA 60.446 57.895 10.47 1.41 0.00 4.26
120 121 0.807667 ATGTCGCCGTGATCAAGAGC 60.808 55.000 10.47 10.49 0.00 4.09
121 122 1.202348 AGATGTCGCCGTGATCAAGAG 60.202 52.381 10.47 4.19 0.00 2.85
122 123 0.817654 AGATGTCGCCGTGATCAAGA 59.182 50.000 10.47 0.00 0.00 3.02
123 124 2.492019 TAGATGTCGCCGTGATCAAG 57.508 50.000 0.00 0.00 0.00 3.02
124 125 2.545742 CCATAGATGTCGCCGTGATCAA 60.546 50.000 0.00 0.00 0.00 2.57
125 126 1.000274 CCATAGATGTCGCCGTGATCA 60.000 52.381 0.00 0.00 0.00 2.92
126 127 1.000163 ACCATAGATGTCGCCGTGATC 60.000 52.381 0.00 0.00 0.00 2.92
127 128 1.040646 ACCATAGATGTCGCCGTGAT 58.959 50.000 0.00 0.00 0.00 3.06
128 129 0.821517 AACCATAGATGTCGCCGTGA 59.178 50.000 0.00 0.00 0.00 4.35
129 130 1.209128 GAACCATAGATGTCGCCGTG 58.791 55.000 0.00 0.00 0.00 4.94
130 131 0.821517 TGAACCATAGATGTCGCCGT 59.178 50.000 0.00 0.00 0.00 5.68
131 132 2.061773 GATGAACCATAGATGTCGCCG 58.938 52.381 0.00 0.00 0.00 6.46
132 133 2.224281 TGGATGAACCATAGATGTCGCC 60.224 50.000 0.00 0.00 44.64 5.54
133 134 3.111853 TGGATGAACCATAGATGTCGC 57.888 47.619 0.00 0.00 44.64 5.19
590 591 4.248058 GGCATGAGCACAAATAGCTTTTT 58.752 39.130 0.00 0.00 43.58 1.94
591 592 3.368739 GGGCATGAGCACAAATAGCTTTT 60.369 43.478 0.00 0.00 45.91 2.27
592 593 2.167075 GGGCATGAGCACAAATAGCTTT 59.833 45.455 0.00 0.00 45.91 3.51
593 594 1.753073 GGGCATGAGCACAAATAGCTT 59.247 47.619 0.00 0.00 45.91 3.74
594 595 1.396653 GGGCATGAGCACAAATAGCT 58.603 50.000 0.00 0.00 45.91 3.32
595 596 3.953201 GGGCATGAGCACAAATAGC 57.047 52.632 0.00 0.00 45.91 2.97
608 609 2.590092 GGACAGCTAACGGGGCAT 59.410 61.111 0.00 0.00 0.00 4.40
745 768 1.764180 TTGTCGTCGCGGGTTTGTTC 61.764 55.000 6.13 0.00 0.00 3.18
838 875 2.158449 CGATTATCTGGCGAAAGATGGC 59.842 50.000 9.78 0.64 37.48 4.40
846 883 1.007734 GGCGTCGATTATCTGGCGA 60.008 57.895 13.15 0.00 0.00 5.54
925 975 3.669354 CTTAGGGAGCTAGTTGGCG 57.331 57.895 0.00 0.00 37.29 5.69
1020 1079 0.822532 GCTTGAGATGCCCCCTGATG 60.823 60.000 0.00 0.00 0.00 3.07
1052 1111 4.285517 ACAGATGATTACTATCCAGGCCAG 59.714 45.833 5.01 0.00 0.00 4.85
1061 1120 2.610479 CCGCCGCACAGATGATTACTAT 60.610 50.000 0.00 0.00 0.00 2.12
1062 1121 1.269569 CCGCCGCACAGATGATTACTA 60.270 52.381 0.00 0.00 0.00 1.82
1107 1166 0.174845 TACTCCATGCCCGAGAAACG 59.825 55.000 4.68 0.00 42.18 3.60
1139 1198 1.128507 CGACGTGTTGCACTGCATTAT 59.871 47.619 4.10 0.00 38.76 1.28
1177 1236 4.507710 CATCTTTCTGAATTCCGGACAGA 58.492 43.478 16.96 16.96 40.24 3.41
1274 1334 4.580580 GGAGTTGTTGAAGAAATCACACCT 59.419 41.667 4.95 0.00 37.92 4.00
1345 1597 1.990799 TTCGTCTCACGGCACATTAG 58.009 50.000 0.00 0.00 42.81 1.73
1396 1648 0.242825 CATCAAACTGGCTGCTGGTG 59.757 55.000 0.00 0.00 0.00 4.17
1549 1805 0.679960 AGGGGCGCATAAAACTGTCC 60.680 55.000 10.83 0.00 0.00 4.02
1589 1845 1.040646 TACAGATCGCATCCCTGGAC 58.959 55.000 0.00 0.00 32.52 4.02
1617 1873 5.752472 CAGCATCACTACTGGAAATGTCTAG 59.248 44.000 0.00 0.00 38.30 2.43
1644 1900 0.924090 CTCTTGCGGCAGAACGATAC 59.076 55.000 1.67 0.00 35.47 2.24
1748 2004 2.087646 GCCTCTGATGAAGGACCAAAC 58.912 52.381 0.00 0.00 0.00 2.93
1784 2040 6.931840 ACAGTCTCTTCATAAAGTCCTTTGAC 59.068 38.462 2.57 0.50 42.09 3.18
1873 2129 2.160171 CCCCTGTGGACCCTGGAAA 61.160 63.158 0.00 0.00 35.39 3.13
1953 2210 0.674895 AGCATTGCCTCAGGACGAAC 60.675 55.000 4.70 0.00 0.00 3.95
1980 2237 4.447389 AGCAAATCGGCACAAAATAAACAC 59.553 37.500 0.00 0.00 35.83 3.32
2004 2261 7.594714 TGCATAGCTTCTGTATACTTAGTAGC 58.405 38.462 11.59 11.59 37.53 3.58
2039 2297 4.887071 ACAATGTTTGTCCAGCAGAAAGTA 59.113 37.500 0.00 0.00 40.56 2.24
2232 2490 7.928167 TGTATGCCTTAACATCTGAATCTACAG 59.072 37.037 0.00 0.00 39.02 2.74
2291 2549 3.425525 CCGTGAATGTGCGATACTACATC 59.574 47.826 0.00 0.00 36.56 3.06
2438 2696 5.220796 CGACTCGTCAACCATCATAGAGTTA 60.221 44.000 0.00 0.00 37.57 2.24
2462 2720 1.268539 CGTGAACCAGCAGAACCAAAC 60.269 52.381 0.00 0.00 0.00 2.93
2543 2801 4.405116 TTCAAGTGGCAAAGCATTTTCT 57.595 36.364 0.00 0.00 35.03 2.52
2591 2849 3.587061 TGTTTGGACCAGTATCACCATCT 59.413 43.478 0.00 0.00 32.31 2.90
2621 2879 2.234586 AGGGGAGTATGCACCCATG 58.765 57.895 17.59 0.00 45.89 3.66
2741 2999 5.914033 TCTATCATAAGCCCGGCATATAAC 58.086 41.667 13.15 0.00 0.00 1.89
2816 3074 1.281867 TCACTAACCTGGCATTCTGGG 59.718 52.381 0.00 0.00 38.62 4.45
2819 3077 6.126652 ACAGATAATCACTAACCTGGCATTCT 60.127 38.462 0.00 0.00 0.00 2.40
2917 3187 3.726557 TTGTCCAGCCTCATCAAGAAT 57.273 42.857 0.00 0.00 0.00 2.40
2930 3200 7.500720 TGCATTCTATTGTGATATTGTCCAG 57.499 36.000 0.00 0.00 0.00 3.86
2960 3231 2.614734 CCCCGTTAGGAAGGAGTTCAAC 60.615 54.545 0.00 0.00 41.02 3.18
2974 3245 3.175594 AGTATGAGGACAAACCCCGTTA 58.824 45.455 0.00 0.00 40.05 3.18
2980 3251 2.092323 GGGCAAGTATGAGGACAAACC 58.908 52.381 0.00 0.00 39.35 3.27
3009 3287 9.155975 GCATCACTAAAGAAAGTATGAAGAGAA 57.844 33.333 0.00 0.00 0.00 2.87
3013 3291 7.856145 AGGCATCACTAAAGAAAGTATGAAG 57.144 36.000 0.00 0.00 0.00 3.02
3095 3382 5.861251 GCCGATTTCTCATGTCATAGACTAG 59.139 44.000 0.00 0.00 33.15 2.57
3109 3399 2.911484 ACCTCTGAATGCCGATTTCTC 58.089 47.619 0.00 0.00 0.00 2.87
3120 3410 7.984050 CACATTCTACAAGATGTACCTCTGAAT 59.016 37.037 1.04 4.06 28.85 2.57
3167 3457 5.483685 AGGCACTCACTCTGTTACAAATA 57.516 39.130 0.00 0.00 0.00 1.40
3192 3482 4.874970 ACACAAAGTTCAGATGGCATTTC 58.125 39.130 0.00 0.00 0.00 2.17
3201 3491 7.933577 ACATGAGAATAAGACACAAAGTTCAGA 59.066 33.333 0.00 0.00 0.00 3.27
3218 3509 6.149308 TGTCGCAAGTAAATGAACATGAGAAT 59.851 34.615 0.00 0.00 30.64 2.40
3228 3520 3.186409 GCTTCTGTGTCGCAAGTAAATGA 59.814 43.478 0.00 0.00 39.48 2.57
3242 3534 1.600076 AGGCTGCACTGCTTCTGTG 60.600 57.895 0.50 0.00 36.59 3.66
3254 3546 0.386838 AGTGAACAAAAGCAGGCTGC 59.613 50.000 31.56 31.56 45.46 5.25
3257 3549 0.386838 AGCAGTGAACAAAAGCAGGC 59.613 50.000 0.00 0.00 0.00 4.85
3277 3569 5.006068 GCAAGTTCCAAAAGAAGAAAGCTTG 59.994 40.000 0.00 0.00 36.97 4.01
3322 3614 1.065926 CAGCAAGAGGTGGCACAGATA 60.066 52.381 20.82 0.00 41.80 1.98
3336 3628 9.630098 AATTACATGAAACAATAGAACAGCAAG 57.370 29.630 0.00 0.00 0.00 4.01
3353 3648 6.768483 TGACTGAACTTCTGGAATTACATGA 58.232 36.000 0.00 0.00 0.00 3.07
3371 3666 5.749588 CACAAATGTCAGCAAAATTGACTGA 59.250 36.000 12.89 12.89 44.08 3.41
3384 3679 5.909621 ATTGAAGATCCCACAAATGTCAG 57.090 39.130 0.00 0.00 0.00 3.51
3458 3758 4.697352 GCATATTGGACTGAACTGTGAGTT 59.303 41.667 0.00 0.00 41.95 3.01
3536 3837 6.794158 GCACGATAGCTCATGTGATAATTTTC 59.206 38.462 14.27 0.00 42.67 2.29
3537 3838 6.484643 AGCACGATAGCTCATGTGATAATTTT 59.515 34.615 14.27 0.00 42.18 1.82
3538 3839 5.994054 AGCACGATAGCTCATGTGATAATTT 59.006 36.000 14.27 0.00 42.18 1.82
3539 3840 5.545588 AGCACGATAGCTCATGTGATAATT 58.454 37.500 14.27 0.00 42.18 1.40
3540 3841 5.144692 AGCACGATAGCTCATGTGATAAT 57.855 39.130 14.27 0.00 42.18 1.28
3550 3851 3.157932 ACTTCAGAAGCACGATAGCTC 57.842 47.619 10.33 0.00 45.89 4.09
3558 3859 6.539649 TTATGTTGTGTACTTCAGAAGCAC 57.460 37.500 10.33 8.33 29.97 4.40
3568 3869 5.579511 GCGGTAAGACATTATGTTGTGTACT 59.420 40.000 0.00 0.00 0.00 2.73
3579 3880 9.386010 ACATACTAAAAATGCGGTAAGACATTA 57.614 29.630 0.00 0.00 35.49 1.90
3581 3882 7.859325 ACATACTAAAAATGCGGTAAGACAT 57.141 32.000 0.00 0.00 0.00 3.06
3583 3884 8.448615 AGAAACATACTAAAAATGCGGTAAGAC 58.551 33.333 0.00 0.00 0.00 3.01
3615 3920 9.063615 ACAAAATGTAAACAGGTAAACTAGGAG 57.936 33.333 0.00 0.00 0.00 3.69
3624 3929 7.492994 GCTGGAAAAACAAAATGTAAACAGGTA 59.507 33.333 0.00 0.00 0.00 3.08
3632 3937 8.610896 CAGAATTTGCTGGAAAAACAAAATGTA 58.389 29.630 0.00 0.00 36.90 2.29
3633 3938 7.474190 CAGAATTTGCTGGAAAAACAAAATGT 58.526 30.769 0.00 0.00 36.90 2.71
3634 3939 7.901874 CAGAATTTGCTGGAAAAACAAAATG 57.098 32.000 0.00 0.00 36.90 2.32
3649 3954 1.541147 TGCAGTACAGCCAGAATTTGC 59.459 47.619 7.87 0.00 0.00 3.68
3652 3957 6.780457 AATTATTGCAGTACAGCCAGAATT 57.220 33.333 10.02 10.02 29.59 2.17
3678 3983 6.133356 ACCTGACACAAAGGAAAGGAATTAA 58.867 36.000 0.00 0.00 38.27 1.40
3680 3985 4.546674 ACCTGACACAAAGGAAAGGAATT 58.453 39.130 0.00 0.00 38.27 2.17
3681 3986 4.184649 ACCTGACACAAAGGAAAGGAAT 57.815 40.909 0.00 0.00 38.27 3.01
3682 3987 3.662759 ACCTGACACAAAGGAAAGGAA 57.337 42.857 0.00 0.00 38.27 3.36
3683 3988 3.662759 AACCTGACACAAAGGAAAGGA 57.337 42.857 0.00 0.00 38.27 3.36
3696 4001 5.649395 TCCAATCTCATCATCAAAACCTGAC 59.351 40.000 0.00 0.00 36.69 3.51
3704 4009 5.945144 TCAGACTCCAATCTCATCATCAA 57.055 39.130 0.00 0.00 0.00 2.57
3760 4065 0.310854 GTGAAACCTTGCCCAGTTCG 59.689 55.000 0.00 0.00 0.00 3.95
3778 4083 1.053424 TTTCAGGCGACCAGGTTAGT 58.947 50.000 0.00 0.00 0.00 2.24
3790 4095 1.353103 CACCATCGCGATTTCAGGC 59.647 57.895 21.14 0.00 0.00 4.85
4018 4323 0.318699 CGACATCCACCGCATCGTAT 60.319 55.000 0.00 0.00 0.00 3.06
4030 4335 2.202756 GGCCAGTCGACGACATCC 60.203 66.667 28.31 20.58 34.60 3.51
4117 4422 4.568169 CCCCGGATTTAGGAAAACCTAACA 60.568 45.833 0.73 2.16 32.77 2.41
4188 4493 0.110238 CTGTCAATTCCGCAACCACG 60.110 55.000 0.00 0.00 0.00 4.94
4244 4557 0.893270 TCGGAGCCAAAACCATGGTG 60.893 55.000 20.60 6.89 42.75 4.17
4252 4565 2.035632 ACAAATGGTTCGGAGCCAAAA 58.964 42.857 17.74 0.00 39.72 2.44
4305 4618 7.509141 TCAAGAGATAATTGCACTTGACAAA 57.491 32.000 14.40 0.29 40.86 2.83
4306 4619 7.175467 ACATCAAGAGATAATTGCACTTGACAA 59.825 33.333 18.12 0.00 45.70 3.18
4330 4643 8.809468 TTAGTTGGTGGTATTATTATTGCACA 57.191 30.769 0.00 0.00 0.00 4.57
4431 4904 6.183360 CGTGTCATTAGCTCACCACATAATTT 60.183 38.462 0.00 0.00 0.00 1.82
4441 4917 4.106197 CCTCTAACGTGTCATTAGCTCAC 58.894 47.826 0.00 0.00 30.95 3.51
4504 4980 9.190317 GGACTATCACATATGGATGTATGTAGA 57.810 37.037 7.80 1.99 44.82 2.59
4505 4981 8.971073 TGGACTATCACATATGGATGTATGTAG 58.029 37.037 7.80 3.53 44.82 2.74
4506 4982 8.893563 TGGACTATCACATATGGATGTATGTA 57.106 34.615 7.80 0.00 44.82 2.29
4507 4983 7.797121 TGGACTATCACATATGGATGTATGT 57.203 36.000 7.80 5.91 44.82 2.29
4508 4984 9.676861 AAATGGACTATCACATATGGATGTATG 57.323 33.333 7.80 0.00 44.82 2.39
4509 4985 9.676861 CAAATGGACTATCACATATGGATGTAT 57.323 33.333 7.80 0.00 44.82 2.29
4510 4986 8.102676 CCAAATGGACTATCACATATGGATGTA 58.897 37.037 7.80 0.00 40.07 2.29
4511 4987 6.944290 CCAAATGGACTATCACATATGGATGT 59.056 38.462 7.80 7.90 41.74 3.06
4512 4988 7.170277 TCCAAATGGACTATCACATATGGATG 58.830 38.462 7.80 0.00 39.78 3.51
4513 4989 7.333779 TCCAAATGGACTATCACATATGGAT 57.666 36.000 7.80 9.38 39.78 3.41
4516 4992 8.400184 ACATTCCAAATGGACTATCACATATG 57.600 34.615 0.54 0.00 45.39 1.78
4517 4993 9.425248 AAACATTCCAAATGGACTATCACATAT 57.575 29.630 0.54 0.00 45.39 1.78
4518 4994 8.821686 AAACATTCCAAATGGACTATCACATA 57.178 30.769 0.54 0.00 45.39 2.29
4519 4995 7.722949 AAACATTCCAAATGGACTATCACAT 57.277 32.000 0.54 0.00 45.39 3.21
4520 4996 8.642935 TTAAACATTCCAAATGGACTATCACA 57.357 30.769 0.54 0.00 45.39 3.58
4521 4997 9.921637 TTTTAAACATTCCAAATGGACTATCAC 57.078 29.630 0.54 0.00 45.39 3.06
4526 5002 8.482128 TGTCTTTTTAAACATTCCAAATGGACT 58.518 29.630 0.54 0.00 45.39 3.85
4527 5003 8.655651 TGTCTTTTTAAACATTCCAAATGGAC 57.344 30.769 0.54 0.00 45.39 4.02
4528 5004 9.672673 TTTGTCTTTTTAAACATTCCAAATGGA 57.327 25.926 0.00 0.00 43.73 3.41
4544 5020 9.908152 CCTCCGTTCTTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
4546 5022 8.857694 TCCTCCGTTCTTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
4547 5023 8.857694 TTCCTCCGTTCTTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
4548 5024 8.101419 ACTTCCTCCGTTCTTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
4549 5025 8.265165 ACTTCCTCCGTTCTTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
4550 5026 9.901172 ATACTTCCTCCGTTCTTAAATATTTGT 57.099 29.630 11.05 0.00 0.00 2.83
4554 5030 9.338622 CCAAATACTTCCTCCGTTCTTAAATAT 57.661 33.333 0.00 0.00 0.00 1.28
4556 5032 7.173032 ACCAAATACTTCCTCCGTTCTTAAAT 58.827 34.615 0.00 0.00 0.00 1.40
4558 5034 6.117975 ACCAAATACTTCCTCCGTTCTTAA 57.882 37.500 0.00 0.00 0.00 1.85
4560 5036 4.635699 ACCAAATACTTCCTCCGTTCTT 57.364 40.909 0.00 0.00 0.00 2.52
4561 5037 5.012354 TGTTACCAAATACTTCCTCCGTTCT 59.988 40.000 0.00 0.00 0.00 3.01
4563 5039 5.231702 TGTTACCAAATACTTCCTCCGTT 57.768 39.130 0.00 0.00 0.00 4.44
4565 5041 5.671493 AGATGTTACCAAATACTTCCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
4569 5045 7.272978 TGCTCTAGATGTTACCAAATACTTCC 58.727 38.462 0.00 0.00 0.00 3.46
4570 5046 8.894768 ATGCTCTAGATGTTACCAAATACTTC 57.105 34.615 0.00 0.00 0.00 3.01
4571 5047 9.331282 GAATGCTCTAGATGTTACCAAATACTT 57.669 33.333 0.00 0.00 0.00 2.24
4572 5048 8.709308 AGAATGCTCTAGATGTTACCAAATACT 58.291 33.333 0.00 0.00 0.00 2.12
4573 5049 8.894768 AGAATGCTCTAGATGTTACCAAATAC 57.105 34.615 0.00 0.00 0.00 1.89
4609 5102 3.432252 ACTTTCAAACAATACGAGGCGAG 59.568 43.478 0.00 0.00 0.00 5.03
4616 5109 3.059188 ACCAGCGACTTTCAAACAATACG 60.059 43.478 0.00 0.00 0.00 3.06
4621 5114 3.859411 AAAACCAGCGACTTTCAAACA 57.141 38.095 0.00 0.00 0.00 2.83
4632 5129 3.963383 ACTTCACAGTTAAAACCAGCG 57.037 42.857 0.00 0.00 0.00 5.18
4637 5134 5.985530 ACCGGTACTACTTCACAGTTAAAAC 59.014 40.000 4.49 0.00 34.06 2.43
4645 5142 1.624336 AGCACCGGTACTACTTCACA 58.376 50.000 6.87 0.00 0.00 3.58
4687 5184 6.252995 TGGCATCCCTTTACACTATTTTCTT 58.747 36.000 0.00 0.00 0.00 2.52
4689 5186 5.652452 ACTGGCATCCCTTTACACTATTTTC 59.348 40.000 0.00 0.00 0.00 2.29
4693 5190 3.117888 CCACTGGCATCCCTTTACACTAT 60.118 47.826 0.00 0.00 0.00 2.12
4709 5206 4.641645 TTCAGCCGCCACCACTGG 62.642 66.667 0.00 0.00 41.13 4.00
4710 5207 2.594303 TTTCAGCCGCCACCACTG 60.594 61.111 0.00 0.00 0.00 3.66
4711 5208 2.281761 CTTTCAGCCGCCACCACT 60.282 61.111 0.00 0.00 0.00 4.00
4712 5209 1.452145 TTTCTTTCAGCCGCCACCAC 61.452 55.000 0.00 0.00 0.00 4.16
4713 5210 0.539438 ATTTCTTTCAGCCGCCACCA 60.539 50.000 0.00 0.00 0.00 4.17
4714 5211 0.603065 AATTTCTTTCAGCCGCCACC 59.397 50.000 0.00 0.00 0.00 4.61
4715 5212 2.029918 AGAAATTTCTTTCAGCCGCCAC 60.030 45.455 15.11 0.00 42.71 5.01
4719 5216 6.826893 TTTTTGAGAAATTTCTTTCAGCCG 57.173 33.333 21.33 0.00 42.71 5.52
4747 5244 6.381994 ACGGAAAAATCTAGACACCCATACTA 59.618 38.462 0.00 0.00 0.00 1.82
4749 5246 5.425630 ACGGAAAAATCTAGACACCCATAC 58.574 41.667 0.00 0.00 0.00 2.39
4750 5247 5.687166 ACGGAAAAATCTAGACACCCATA 57.313 39.130 0.00 0.00 0.00 2.74
4751 5248 4.569719 ACGGAAAAATCTAGACACCCAT 57.430 40.909 0.00 0.00 0.00 4.00
4752 5249 4.360951 AACGGAAAAATCTAGACACCCA 57.639 40.909 0.00 0.00 0.00 4.51
4753 5250 5.001874 AGAAACGGAAAAATCTAGACACCC 58.998 41.667 0.00 0.00 0.00 4.61
4754 5251 5.932883 AGAGAAACGGAAAAATCTAGACACC 59.067 40.000 0.00 0.00 0.00 4.16
4755 5252 7.422878 AAGAGAAACGGAAAAATCTAGACAC 57.577 36.000 0.00 0.00 0.00 3.67
4756 5253 8.446599 AAAAGAGAAACGGAAAAATCTAGACA 57.553 30.769 0.00 0.00 0.00 3.41
4824 5321 3.553828 TGTCCTTCGTCCAGACTTTTT 57.446 42.857 0.00 0.00 0.00 1.94
4825 5322 3.771577 ATGTCCTTCGTCCAGACTTTT 57.228 42.857 0.00 0.00 0.00 2.27
4826 5323 3.771577 AATGTCCTTCGTCCAGACTTT 57.228 42.857 0.00 0.00 0.00 2.66
4827 5324 3.403038 CAAATGTCCTTCGTCCAGACTT 58.597 45.455 0.00 0.00 0.00 3.01
4828 5325 2.872038 GCAAATGTCCTTCGTCCAGACT 60.872 50.000 0.00 0.00 0.00 3.24
4829 5326 1.464997 GCAAATGTCCTTCGTCCAGAC 59.535 52.381 0.00 0.00 0.00 3.51
4836 5333 1.536766 TCAGCAAGCAAATGTCCTTCG 59.463 47.619 0.00 0.00 0.00 3.79
4873 5391 3.193479 GTGGTTGAATAAAAGCCCAGGAG 59.807 47.826 0.00 0.00 0.00 3.69
4875 5393 2.094752 CGTGGTTGAATAAAAGCCCAGG 60.095 50.000 0.00 0.00 0.00 4.45
4876 5394 2.094752 CCGTGGTTGAATAAAAGCCCAG 60.095 50.000 0.00 0.00 0.00 4.45
4893 5411 3.353836 CGGTCTGTTTGGGCCGTG 61.354 66.667 0.00 0.00 39.41 4.94
4923 5441 2.383527 GCTCCGTTCGTTGCTCTGG 61.384 63.158 0.00 0.00 0.00 3.86
4962 5482 4.615949 AGTGCTACGAAATGATAGCTCTG 58.384 43.478 6.95 0.00 43.24 3.35
4995 5515 8.573035 TGGAACTAAACGAAATGATAGCTTTTT 58.427 29.630 0.00 0.00 0.00 1.94
4996 5516 8.021396 GTGGAACTAAACGAAATGATAGCTTTT 58.979 33.333 0.00 0.00 0.00 2.27
4997 5517 7.361799 GGTGGAACTAAACGAAATGATAGCTTT 60.362 37.037 0.00 0.00 36.74 3.51
4998 5518 6.093633 GGTGGAACTAAACGAAATGATAGCTT 59.906 38.462 0.00 0.00 36.74 3.74
4999 5519 5.585047 GGTGGAACTAAACGAAATGATAGCT 59.415 40.000 0.00 0.00 36.74 3.32
5000 5520 5.585047 AGGTGGAACTAAACGAAATGATAGC 59.415 40.000 0.00 0.00 36.74 2.97
5001 5521 7.464358 CAAGGTGGAACTAAACGAAATGATAG 58.536 38.462 0.00 0.00 36.74 2.08
5002 5522 6.128117 GCAAGGTGGAACTAAACGAAATGATA 60.128 38.462 0.00 0.00 36.74 2.15
5003 5523 5.335661 GCAAGGTGGAACTAAACGAAATGAT 60.336 40.000 0.00 0.00 36.74 2.45
5004 5524 4.023536 GCAAGGTGGAACTAAACGAAATGA 60.024 41.667 0.00 0.00 36.74 2.57
5005 5525 4.226761 GCAAGGTGGAACTAAACGAAATG 58.773 43.478 0.00 0.00 36.74 2.32
5006 5526 3.058501 CGCAAGGTGGAACTAAACGAAAT 60.059 43.478 0.00 0.00 36.74 2.17
5035 5555 4.082523 TTCGCCTCCCTTCCGCTG 62.083 66.667 0.00 0.00 0.00 5.18
5068 5588 0.110486 TTCTTGGTGGCAAGGGTCTC 59.890 55.000 0.00 0.00 33.26 3.36
5069 5589 0.111253 CTTCTTGGTGGCAAGGGTCT 59.889 55.000 0.00 0.00 33.26 3.85
5075 5595 1.999648 ATGCTTCTTCTTGGTGGCAA 58.000 45.000 0.00 0.00 33.44 4.52
5076 5596 2.436417 GTATGCTTCTTCTTGGTGGCA 58.564 47.619 0.00 0.00 0.00 4.92
5082 5602 4.331168 CCGAGAAAGGTATGCTTCTTCTTG 59.669 45.833 0.00 0.00 32.01 3.02
5083 5603 4.508662 CCGAGAAAGGTATGCTTCTTCTT 58.491 43.478 0.00 0.00 32.01 2.52
5084 5604 3.680196 GCCGAGAAAGGTATGCTTCTTCT 60.680 47.826 0.00 0.00 32.01 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.