Multiple sequence alignment - TraesCS4A01G413700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G413700 chr4A 100.000 2306 0 0 1 2306 684610351 684612656 0.000000e+00 4259.0
1 TraesCS4A01G413700 chr4A 100.000 43 0 0 1867 1909 684612183 684612225 1.900000e-11 80.5
2 TraesCS4A01G413700 chr4A 100.000 43 0 0 1833 1875 684612217 684612259 1.900000e-11 80.5
3 TraesCS4A01G413700 chr4D 95.300 766 36 0 202 967 477912248 477913013 0.000000e+00 1216.0
4 TraesCS4A01G413700 chr4D 91.831 355 28 1 963 1316 477913058 477913412 5.720000e-136 494.0
5 TraesCS4A01G413700 chr4D 88.636 132 6 5 75 206 477911915 477912037 3.970000e-33 152.0
6 TraesCS4A01G413700 chr4D 89.583 48 4 1 1 47 477911776 477911823 2.470000e-05 60.2
7 TraesCS4A01G413700 chr4B 94.778 766 40 0 202 967 604139614 604140379 0.000000e+00 1194.0
8 TraesCS4A01G413700 chr4B 90.556 773 62 8 198 967 604131088 604131852 0.000000e+00 1013.0
9 TraesCS4A01G413700 chr4B 90.000 580 44 8 963 1536 604140424 604140995 0.000000e+00 737.0
10 TraesCS4A01G413700 chr4B 86.780 590 53 17 963 1536 604131897 604132477 3.230000e-178 634.0
11 TraesCS4A01G413700 chr6A 92.318 742 21 3 1565 2306 116955603 116956308 0.000000e+00 1022.0
12 TraesCS4A01G413700 chr6A 87.758 727 75 6 242 967 8868706 8867993 0.000000e+00 837.0
13 TraesCS4A01G413700 chr6A 86.194 775 86 8 202 967 8792426 8791664 0.000000e+00 819.0
14 TraesCS4A01G413700 chr6A 83.871 775 104 8 202 967 8754743 8753981 0.000000e+00 719.0
15 TraesCS4A01G413700 chr6A 82.293 593 95 8 407 990 553766317 553765726 2.640000e-139 505.0
16 TraesCS4A01G413700 chr6A 88.924 316 35 0 963 1278 8867948 8867633 7.720000e-105 390.0
17 TraesCS4A01G413700 chr6A 87.975 316 38 0 963 1278 8791619 8791304 7.780000e-100 374.0
18 TraesCS4A01G413700 chr6A 89.720 107 5 3 100 206 8792734 8792634 5.170000e-27 132.0
19 TraesCS4A01G413700 chr6A 100.000 29 0 0 178 206 8959739 8959711 1.000000e-03 54.7
20 TraesCS4A01G413700 chr6B 83.212 1102 147 18 202 1278 16241206 16242294 0.000000e+00 976.0
21 TraesCS4A01G413700 chr6B 86.392 316 43 0 963 1278 16247578 16247893 1.700000e-91 346.0
22 TraesCS4A01G413700 chr6B 89.720 107 5 4 100 206 16240898 16240998 5.170000e-27 132.0
23 TraesCS4A01G413700 chr6B 80.000 140 28 0 963 1102 612858536 612858675 1.130000e-18 104.0
24 TraesCS4A01G413700 chr6D 87.758 727 75 6 242 967 8348575 8347862 0.000000e+00 837.0
25 TraesCS4A01G413700 chr6D 85.935 775 88 10 202 967 8386284 8385522 0.000000e+00 808.0
26 TraesCS4A01G413700 chr6D 88.924 316 35 0 963 1278 8347817 8347502 7.720000e-105 390.0
27 TraesCS4A01G413700 chr6D 89.524 105 5 3 100 204 8386592 8386494 6.690000e-26 128.0
28 TraesCS4A01G413700 chr2A 98.182 440 8 0 1867 2306 739871836 739871397 0.000000e+00 769.0
29 TraesCS4A01G413700 chr2A 91.586 309 16 5 1569 1875 739872094 739871794 3.540000e-113 418.0
30 TraesCS4A01G413700 chr3A 97.955 440 9 0 1867 2306 141601859 141602298 0.000000e+00 763.0
31 TraesCS4A01G413700 chr3A 91.422 443 36 2 1865 2306 744916355 744916796 7.050000e-170 606.0
32 TraesCS4A01G413700 chr3A 91.163 430 35 3 1865 2293 744982629 744983056 4.270000e-162 580.0
33 TraesCS4A01G413700 chr3A 90.698 430 37 3 1865 2293 744990674 744991101 9.240000e-159 569.0
34 TraesCS4A01G413700 chr3A 92.258 310 15 5 1566 1875 141601601 141601901 4.550000e-117 431.0
35 TraesCS4A01G413700 chr3A 88.400 250 29 0 1565 1814 744982386 744982635 3.720000e-78 302.0
36 TraesCS4A01G413700 chr2D 96.825 441 12 2 1867 2306 56802876 56802437 0.000000e+00 736.0
37 TraesCS4A01G413700 chr2D 92.332 313 13 6 1566 1875 56803138 56802834 3.520000e-118 435.0
38 TraesCS4A01G413700 chr7A 94.091 440 26 0 1867 2306 95149984 95149545 0.000000e+00 669.0
39 TraesCS4A01G413700 chr7A 90.000 310 20 5 1566 1875 95150240 95149942 7.720000e-105 390.0
40 TraesCS4A01G413700 chr7A 81.600 125 20 3 1561 1684 627045023 627044901 1.460000e-17 100.0
41 TraesCS4A01G413700 chr7A 80.000 120 20 4 1561 1679 627113268 627113152 4.080000e-13 86.1
42 TraesCS4A01G413700 chr5B 94.318 440 10 5 1867 2306 632328278 632328702 0.000000e+00 660.0
43 TraesCS4A01G413700 chr5B 90.667 150 12 2 1566 1715 632328078 632328225 5.030000e-47 198.0
44 TraesCS4A01G413700 chr5B 90.291 103 2 4 1773 1875 632328226 632328320 6.690000e-26 128.0
45 TraesCS4A01G413700 chr7B 88.713 443 32 8 1867 2303 735292736 735293166 2.030000e-145 525.0
46 TraesCS4A01G413700 chr7B 91.589 107 4 3 1774 1875 735292672 735292778 2.390000e-30 143.0
47 TraesCS4A01G413700 chr1B 88.525 183 18 3 2083 2263 51988799 51988618 3.860000e-53 219.0
48 TraesCS4A01G413700 chr1B 88.060 134 6 5 1950 2082 51994306 51994182 1.430000e-32 150.0
49 TraesCS4A01G413700 chr1B 88.542 96 3 4 1771 1866 51994403 51994316 2.420000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G413700 chr4A 684610351 684612656 2305 False 1473.333333 4259 100.000000 1 2306 3 chr4A.!!$F1 2305
1 TraesCS4A01G413700 chr4D 477911776 477913412 1636 False 480.550000 1216 91.337500 1 1316 4 chr4D.!!$F1 1315
2 TraesCS4A01G413700 chr4B 604139614 604140995 1381 False 965.500000 1194 92.389000 202 1536 2 chr4B.!!$F2 1334
3 TraesCS4A01G413700 chr4B 604131088 604132477 1389 False 823.500000 1013 88.668000 198 1536 2 chr4B.!!$F1 1338
4 TraesCS4A01G413700 chr6A 116955603 116956308 705 False 1022.000000 1022 92.318000 1565 2306 1 chr6A.!!$F1 741
5 TraesCS4A01G413700 chr6A 8753981 8754743 762 True 719.000000 719 83.871000 202 967 1 chr6A.!!$R1 765
6 TraesCS4A01G413700 chr6A 8867633 8868706 1073 True 613.500000 837 88.341000 242 1278 2 chr6A.!!$R5 1036
7 TraesCS4A01G413700 chr6A 553765726 553766317 591 True 505.000000 505 82.293000 407 990 1 chr6A.!!$R3 583
8 TraesCS4A01G413700 chr6A 8791304 8792734 1430 True 441.666667 819 87.963000 100 1278 3 chr6A.!!$R4 1178
9 TraesCS4A01G413700 chr6B 16240898 16242294 1396 False 554.000000 976 86.466000 100 1278 2 chr6B.!!$F3 1178
10 TraesCS4A01G413700 chr6D 8347502 8348575 1073 True 613.500000 837 88.341000 242 1278 2 chr6D.!!$R1 1036
11 TraesCS4A01G413700 chr6D 8385522 8386592 1070 True 468.000000 808 87.729500 100 967 2 chr6D.!!$R2 867
12 TraesCS4A01G413700 chr2A 739871397 739872094 697 True 593.500000 769 94.884000 1569 2306 2 chr2A.!!$R1 737
13 TraesCS4A01G413700 chr3A 141601601 141602298 697 False 597.000000 763 95.106500 1566 2306 2 chr3A.!!$F3 740
14 TraesCS4A01G413700 chr3A 744982386 744983056 670 False 441.000000 580 89.781500 1565 2293 2 chr3A.!!$F4 728
15 TraesCS4A01G413700 chr2D 56802437 56803138 701 True 585.500000 736 94.578500 1566 2306 2 chr2D.!!$R1 740
16 TraesCS4A01G413700 chr7A 95149545 95150240 695 True 529.500000 669 92.045500 1566 2306 2 chr7A.!!$R3 740
17 TraesCS4A01G413700 chr5B 632328078 632328702 624 False 328.666667 660 91.758667 1566 2306 3 chr5B.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 592 0.552848 TGGATTTCTCCATGGAGGCC 59.447 55.0 35.95 29.4 46.95 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1943 0.0421 GCAATTTACTCGCGGCTAGC 60.042 55.0 6.04 6.04 43.95 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.873361 ACGTGATTGTGATTGCTATCCTG 59.127 43.478 5.67 0.00 0.00 3.86
35 36 3.881089 TGATTGTGATTGCTATCCTGCTG 59.119 43.478 5.67 0.00 0.00 4.41
36 37 1.671979 TGTGATTGCTATCCTGCTGC 58.328 50.000 5.67 0.00 0.00 5.25
38 39 0.841961 TGATTGCTATCCTGCTGCCT 59.158 50.000 5.67 0.00 0.00 4.75
39 40 2.049372 TGATTGCTATCCTGCTGCCTA 58.951 47.619 5.67 0.00 0.00 3.93
40 41 2.641321 TGATTGCTATCCTGCTGCCTAT 59.359 45.455 5.67 0.00 0.00 2.57
41 42 3.840078 TGATTGCTATCCTGCTGCCTATA 59.160 43.478 5.67 0.00 0.00 1.31
44 45 4.916041 TGCTATCCTGCTGCCTATAAAT 57.084 40.909 0.00 0.00 0.00 1.40
69 105 2.104622 TCATATCCTCGATTGGCAGCAA 59.895 45.455 0.00 0.00 0.00 3.91
71 107 0.749454 ATCCTCGATTGGCAGCAACC 60.749 55.000 0.00 0.00 0.00 3.77
81 151 1.595382 GCAGCAACCAGTGTCGTCT 60.595 57.895 0.00 0.00 0.00 4.18
88 158 2.202362 CAGTGTCGTCTCGGCTCG 60.202 66.667 0.00 0.00 30.22 5.03
115 188 1.075536 ACGGGGAAATGGCTTCTTCTT 59.924 47.619 0.00 0.00 34.17 2.52
117 190 1.745653 GGGGAAATGGCTTCTTCTTCG 59.254 52.381 0.00 0.00 34.17 3.79
118 191 1.745653 GGGAAATGGCTTCTTCTTCGG 59.254 52.381 0.00 0.00 34.17 4.30
120 193 1.812571 GAAATGGCTTCTTCTTCGGCA 59.187 47.619 0.00 0.00 37.63 5.69
121 194 1.168714 AATGGCTTCTTCTTCGGCAC 58.831 50.000 0.00 0.00 36.00 5.01
123 196 2.391389 GGCTTCTTCTTCGGCACCG 61.391 63.158 1.73 1.73 41.35 4.94
124 197 3.028366 GCTTCTTCTTCGGCACCGC 62.028 63.158 3.66 0.00 39.59 5.68
125 198 2.358247 TTCTTCTTCGGCACCGCC 60.358 61.111 3.66 0.00 46.75 6.13
280 577 0.746923 TCTCCGACGTCGTCATGGAT 60.747 55.000 33.49 0.00 37.74 3.41
295 592 0.552848 TGGATTTCTCCATGGAGGCC 59.447 55.000 35.95 29.40 46.95 5.19
491 789 2.625639 ACATGAGGTTCAGGGACTTCT 58.374 47.619 0.00 0.00 34.60 2.85
732 1048 2.663188 GAGCCTATGGAAGCCGCG 60.663 66.667 0.00 0.00 0.00 6.46
844 1160 4.309950 GTGGAGTTCGCGTGGGGT 62.310 66.667 5.77 0.00 0.00 4.95
1211 1577 2.066999 GGAGGGAGAAGGCGGTCAT 61.067 63.158 0.00 0.00 0.00 3.06
1215 1581 2.268920 GAGAAGGCGGTCATGGCA 59.731 61.111 0.00 0.00 36.77 4.92
1248 1614 2.720758 CTCGTCTCGCCGCAACTTG 61.721 63.158 0.00 0.00 0.00 3.16
1336 1704 0.894184 CCCTGCTCCATCCATGATGC 60.894 60.000 0.00 0.00 38.59 3.91
1338 1706 0.952280 CTGCTCCATCCATGATGCAC 59.048 55.000 0.00 0.00 38.59 4.57
1339 1707 0.816421 TGCTCCATCCATGATGCACG 60.816 55.000 0.00 0.00 38.59 5.34
1340 1708 1.512996 GCTCCATCCATGATGCACGG 61.513 60.000 0.00 0.00 38.59 4.94
1341 1709 0.179037 CTCCATCCATGATGCACGGT 60.179 55.000 0.00 0.00 38.59 4.83
1342 1710 0.179048 TCCATCCATGATGCACGGTC 60.179 55.000 0.00 0.00 38.59 4.79
1343 1711 0.179037 CCATCCATGATGCACGGTCT 60.179 55.000 0.00 0.00 38.59 3.85
1344 1712 1.671979 CATCCATGATGCACGGTCTT 58.328 50.000 0.00 0.00 33.17 3.01
1377 1745 2.144730 TCGGCGGAGAAATTCGAAAAA 58.855 42.857 7.21 0.00 0.00 1.94
1384 1752 5.388371 GCGGAGAAATTCGAAAAACAAATGG 60.388 40.000 0.00 0.00 0.00 3.16
1386 1754 6.220201 GGAGAAATTCGAAAAACAAATGGGA 58.780 36.000 0.00 0.00 0.00 4.37
1391 1759 2.225491 TCGAAAAACAAATGGGAGCGAG 59.775 45.455 0.00 0.00 0.00 5.03
1393 1761 3.308530 GAAAAACAAATGGGAGCGAGTG 58.691 45.455 0.00 0.00 0.00 3.51
1398 1766 0.108585 AAATGGGAGCGAGTGTGTGT 59.891 50.000 0.00 0.00 0.00 3.72
1402 1770 0.317479 GGGAGCGAGTGTGTGTAAGT 59.683 55.000 0.00 0.00 0.00 2.24
1406 1774 1.335810 AGCGAGTGTGTGTAAGTCGAA 59.664 47.619 4.93 0.00 41.90 3.71
1432 1801 2.083774 TCTGCCGTTGGATTTGTGATC 58.916 47.619 0.00 0.00 0.00 2.92
1458 1836 3.057734 GGTCCAACAGAACTTCAGTACG 58.942 50.000 0.00 0.00 0.00 3.67
1480 1861 4.464112 GACCAAAATCGACTTACACAAGC 58.536 43.478 0.00 0.00 34.94 4.01
1536 1923 2.260822 ACATAGTTGGGCTGTGAGAGT 58.739 47.619 0.00 0.00 38.42 3.24
1537 1924 2.234908 ACATAGTTGGGCTGTGAGAGTC 59.765 50.000 0.00 0.00 38.42 3.36
1538 1925 2.310779 TAGTTGGGCTGTGAGAGTCT 57.689 50.000 0.00 0.00 0.00 3.24
1539 1926 0.972883 AGTTGGGCTGTGAGAGTCTC 59.027 55.000 13.56 13.56 0.00 3.36
1540 1927 0.389166 GTTGGGCTGTGAGAGTCTCG 60.389 60.000 15.34 2.57 32.35 4.04
1541 1928 0.539669 TTGGGCTGTGAGAGTCTCGA 60.540 55.000 15.34 3.76 32.35 4.04
1542 1929 1.244697 TGGGCTGTGAGAGTCTCGAC 61.245 60.000 15.34 13.93 32.35 4.20
1543 1930 1.509004 GGCTGTGAGAGTCTCGACC 59.491 63.158 15.34 9.73 32.35 4.79
1544 1931 1.244697 GGCTGTGAGAGTCTCGACCA 61.245 60.000 15.34 10.49 32.35 4.02
1545 1932 0.598562 GCTGTGAGAGTCTCGACCAA 59.401 55.000 15.34 0.00 32.35 3.67
1546 1933 1.000163 GCTGTGAGAGTCTCGACCAAA 60.000 52.381 15.34 0.00 32.35 3.28
1547 1934 2.545952 GCTGTGAGAGTCTCGACCAAAA 60.546 50.000 15.34 0.00 32.35 2.44
1548 1935 3.053455 CTGTGAGAGTCTCGACCAAAAC 58.947 50.000 15.34 6.62 32.35 2.43
1549 1936 2.693591 TGTGAGAGTCTCGACCAAAACT 59.306 45.455 15.34 0.00 32.35 2.66
1550 1937 3.887110 TGTGAGAGTCTCGACCAAAACTA 59.113 43.478 15.34 0.00 32.35 2.24
1551 1938 4.523173 TGTGAGAGTCTCGACCAAAACTAT 59.477 41.667 15.34 0.00 32.35 2.12
1552 1939 5.708697 TGTGAGAGTCTCGACCAAAACTATA 59.291 40.000 15.34 0.00 32.35 1.31
1553 1940 6.028987 GTGAGAGTCTCGACCAAAACTATAC 58.971 44.000 15.34 0.00 32.35 1.47
1554 1941 5.125097 TGAGAGTCTCGACCAAAACTATACC 59.875 44.000 15.34 0.00 32.35 2.73
1555 1942 5.262804 AGAGTCTCGACCAAAACTATACCT 58.737 41.667 0.00 0.00 0.00 3.08
1556 1943 5.125739 AGAGTCTCGACCAAAACTATACCTG 59.874 44.000 0.00 0.00 0.00 4.00
1557 1944 3.864003 GTCTCGACCAAAACTATACCTGC 59.136 47.826 0.00 0.00 0.00 4.85
1558 1945 3.767673 TCTCGACCAAAACTATACCTGCT 59.232 43.478 0.00 0.00 0.00 4.24
1559 1946 4.951715 TCTCGACCAAAACTATACCTGCTA 59.048 41.667 0.00 0.00 0.00 3.49
1560 1947 5.067413 TCTCGACCAAAACTATACCTGCTAG 59.933 44.000 0.00 0.00 0.00 3.42
1561 1948 3.802685 CGACCAAAACTATACCTGCTAGC 59.197 47.826 8.10 8.10 0.00 3.42
1562 1949 4.127907 GACCAAAACTATACCTGCTAGCC 58.872 47.826 13.29 0.00 0.00 3.93
1563 1950 3.131396 CCAAAACTATACCTGCTAGCCG 58.869 50.000 13.29 5.57 0.00 5.52
1657 2052 3.740832 GCAAAAACAACCAGGTATTCAGC 59.259 43.478 0.00 0.00 0.00 4.26
1724 2119 3.779183 ACACAGAATCTGACAGATGGGAT 59.221 43.478 18.63 2.81 34.65 3.85
1738 2133 3.846588 AGATGGGATCCAGTTGTAAGTGT 59.153 43.478 15.23 0.00 36.75 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.768955 CGAGGATATGAATTATTTATAGGCAGC 58.231 37.037 0.00 0.00 0.00 5.25
39 40 9.685276 TGCCAATCGAGGATATGAATTATTTAT 57.315 29.630 0.00 0.00 0.00 1.40
40 41 9.166173 CTGCCAATCGAGGATATGAATTATTTA 57.834 33.333 0.00 0.00 0.00 1.40
41 42 7.362401 GCTGCCAATCGAGGATATGAATTATTT 60.362 37.037 0.00 0.00 0.00 1.40
44 45 4.937620 GCTGCCAATCGAGGATATGAATTA 59.062 41.667 0.00 0.00 0.00 1.40
59 95 1.518056 CGACACTGGTTGCTGCCAAT 61.518 55.000 0.00 0.00 38.18 3.16
60 96 2.186160 CGACACTGGTTGCTGCCAA 61.186 57.895 0.00 0.00 38.18 4.52
61 97 2.591429 CGACACTGGTTGCTGCCA 60.591 61.111 0.00 0.22 36.97 4.92
62 98 2.591715 ACGACACTGGTTGCTGCC 60.592 61.111 0.00 0.00 31.02 4.85
69 105 2.597805 AGCCGAGACGACACTGGT 60.598 61.111 0.00 0.00 0.00 4.00
71 107 2.183858 TTCGAGCCGAGACGACACTG 62.184 60.000 0.00 0.00 37.14 3.66
88 158 0.389817 GCCATTTCCCCGTGCTTTTC 60.390 55.000 0.00 0.00 0.00 2.29
280 577 2.272146 GCGGCCTCCATGGAGAAA 59.728 61.111 38.37 7.03 44.53 2.52
457 755 2.285368 ATGTTCCTCAGGCCCGGA 60.285 61.111 0.73 0.00 0.00 5.14
491 789 1.226974 GGCTGCGTATGAAGCTCGA 60.227 57.895 14.77 0.00 46.94 4.04
694 1010 2.202932 CTGATGGCGGAACTCGGG 60.203 66.667 0.00 0.00 39.69 5.14
971 1337 4.742201 TCGAGTTCCAGCCGCTGC 62.742 66.667 15.36 1.50 37.95 5.25
1011 1377 2.046988 CAGCTGATGACGGGCACA 60.047 61.111 8.42 0.00 0.00 4.57
1076 1442 4.248842 CCATGCCGACGCCCCATA 62.249 66.667 0.00 0.00 0.00 2.74
1130 1496 1.541233 CCATGACCTCCGTGATAAGGC 60.541 57.143 0.00 0.00 36.01 4.35
1248 1614 3.889044 TCGCGGATCAGCTCGTCC 61.889 66.667 15.92 4.16 34.40 4.79
1308 1675 1.207488 ATGGAGCAGGGCAGGTACAA 61.207 55.000 0.00 0.00 32.86 2.41
1349 1717 2.739849 TTTCTCCGCCGATGGTGCAA 62.740 55.000 0.00 0.00 0.00 4.08
1351 1719 1.376609 AATTTCTCCGCCGATGGTGC 61.377 55.000 0.00 0.00 0.00 5.01
1359 1727 3.276882 TGTTTTTCGAATTTCTCCGCC 57.723 42.857 0.00 0.00 0.00 6.13
1362 1730 6.220201 TCCCATTTGTTTTTCGAATTTCTCC 58.780 36.000 0.00 0.00 0.00 3.71
1377 1745 0.108585 ACACACTCGCTCCCATTTGT 59.891 50.000 0.00 0.00 0.00 2.83
1384 1752 1.699343 GACTTACACACACTCGCTCC 58.301 55.000 0.00 0.00 0.00 4.70
1386 1754 0.949397 TCGACTTACACACACTCGCT 59.051 50.000 0.00 0.00 0.00 4.93
1426 1795 0.389757 TGTTGGACCGTTCGATCACA 59.610 50.000 0.00 0.00 0.00 3.58
1432 1801 1.525619 GAAGTTCTGTTGGACCGTTCG 59.474 52.381 0.00 0.00 0.00 3.95
1458 1836 4.213482 AGCTTGTGTAAGTCGATTTTGGTC 59.787 41.667 0.00 0.00 36.27 4.02
1536 1923 3.767673 AGCAGGTATAGTTTTGGTCGAGA 59.232 43.478 0.00 0.00 0.00 4.04
1537 1924 4.124851 AGCAGGTATAGTTTTGGTCGAG 57.875 45.455 0.00 0.00 0.00 4.04
1538 1925 4.441079 GCTAGCAGGTATAGTTTTGGTCGA 60.441 45.833 10.63 0.00 0.00 4.20
1539 1926 3.802685 GCTAGCAGGTATAGTTTTGGTCG 59.197 47.826 10.63 0.00 0.00 4.79
1540 1927 4.127907 GGCTAGCAGGTATAGTTTTGGTC 58.872 47.826 18.24 0.00 0.00 4.02
1541 1928 3.431766 CGGCTAGCAGGTATAGTTTTGGT 60.432 47.826 18.24 0.00 0.00 3.67
1542 1929 3.131396 CGGCTAGCAGGTATAGTTTTGG 58.869 50.000 18.24 0.00 0.00 3.28
1556 1943 0.042100 GCAATTTACTCGCGGCTAGC 60.042 55.000 6.04 6.04 43.95 3.42
1557 1944 1.286501 TGCAATTTACTCGCGGCTAG 58.713 50.000 6.13 0.00 0.00 3.42
1558 1945 1.728068 TTGCAATTTACTCGCGGCTA 58.272 45.000 6.13 0.00 0.00 3.93
1559 1946 0.878416 TTTGCAATTTACTCGCGGCT 59.122 45.000 6.13 0.00 0.00 5.52
1560 1947 1.692296 TTTTGCAATTTACTCGCGGC 58.308 45.000 6.13 0.00 0.00 6.53
1643 2038 4.322057 AAGGATTGCTGAATACCTGGTT 57.678 40.909 3.84 0.00 0.00 3.67
1724 2119 3.191669 CACGTCAACACTTACAACTGGA 58.808 45.455 0.00 0.00 0.00 3.86
1992 2389 4.103103 CGAGCGTCGTCCAGAGCA 62.103 66.667 0.00 0.00 34.72 4.26
2014 2411 2.436646 CGCTGGTTGGCTTCCGAT 60.437 61.111 0.00 0.00 0.00 4.18
2175 2573 3.411446 AGGTGTTCGATCAAATGCAAGA 58.589 40.909 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.