Multiple sequence alignment - TraesCS4A01G413000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G413000 chr4A 100.000 2567 0 0 1 2567 684502153 684504719 0.000000e+00 4741.0
1 TraesCS4A01G413000 chr4A 79.290 169 27 8 362 526 665738227 665738391 7.510000e-21 111.0
2 TraesCS4A01G413000 chr4D 92.526 1445 65 13 669 2105 477577163 477578572 0.000000e+00 2030.0
3 TraesCS4A01G413000 chr4D 94.127 664 21 6 1 664 477576481 477577126 0.000000e+00 994.0
4 TraesCS4A01G413000 chr4D 92.213 244 17 2 2102 2345 477580372 477580613 6.800000e-91 344.0
5 TraesCS4A01G413000 chr4D 86.190 210 24 2 1 205 477576115 477576324 3.320000e-54 222.0
6 TraesCS4A01G413000 chr4B 87.265 1704 121 41 196 1863 603165440 603167083 0.000000e+00 1857.0
7 TraesCS4A01G413000 chr4B 90.202 347 33 1 2007 2353 603167081 603167426 3.890000e-123 451.0
8 TraesCS4A01G413000 chr6B 85.149 1037 110 26 773 1780 15919652 15918631 0.000000e+00 1022.0
9 TraesCS4A01G413000 chr6B 84.860 1037 113 26 773 1780 15899794 15898773 0.000000e+00 1005.0
10 TraesCS4A01G413000 chr6B 84.857 1017 118 21 773 1765 15890769 15889765 0.000000e+00 992.0
11 TraesCS4A01G413000 chr6B 84.586 1038 117 29 773 1780 15895509 15894485 0.000000e+00 990.0
12 TraesCS4A01G413000 chr6B 84.586 1038 117 29 773 1780 15904535 15903511 0.000000e+00 990.0
13 TraesCS4A01G413000 chr6B 84.586 1038 117 29 773 1780 15924389 15923365 0.000000e+00 990.0
14 TraesCS4A01G413000 chr6B 84.860 1037 94 31 794 1780 15928628 15927605 0.000000e+00 987.0
15 TraesCS4A01G413000 chr6D 84.095 1006 111 27 796 1765 8733102 8732110 0.000000e+00 926.0
16 TraesCS4A01G413000 chr6D 81.953 1147 129 47 690 1768 8758902 8757766 0.000000e+00 900.0
17 TraesCS4A01G413000 chr6D 86.792 106 13 1 362 466 419760601 419760706 1.610000e-22 117.0
18 TraesCS4A01G413000 chr6A 79.077 325 38 18 1463 1780 9181788 9182089 2.010000e-46 196.0
19 TraesCS4A01G413000 chr1A 77.778 306 39 16 358 656 300392955 300392672 7.350000e-36 161.0
20 TraesCS4A01G413000 chr1A 92.381 105 6 1 1676 1780 300111851 300111749 5.720000e-32 148.0
21 TraesCS4A01G413000 chr1A 92.063 63 4 1 1591 1653 300111915 300111854 1.270000e-13 87.9
22 TraesCS4A01G413000 chr1A 90.000 60 6 0 362 421 570390910 570390969 7.620000e-11 78.7
23 TraesCS4A01G413000 chr1D 88.298 94 8 1 1690 1780 247298932 247299025 2.700000e-20 110.0
24 TraesCS4A01G413000 chr1D 90.741 54 5 0 368 421 474879469 474879522 3.540000e-09 73.1
25 TraesCS4A01G413000 chr1B 87.234 94 9 1 1690 1780 330509688 330509595 1.260000e-18 104.0
26 TraesCS4A01G413000 chr2B 87.500 64 8 0 368 431 518747805 518747742 9.850000e-10 75.0
27 TraesCS4A01G413000 chr2D 85.938 64 9 0 368 431 440775173 440775110 4.580000e-08 69.4
28 TraesCS4A01G413000 chr2D 85.938 64 9 0 368 431 440777022 440776959 4.580000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G413000 chr4A 684502153 684504719 2566 False 4741.000000 4741 100.00000 1 2567 1 chr4A.!!$F2 2566
1 TraesCS4A01G413000 chr4D 477576115 477580613 4498 False 897.500000 2030 91.26400 1 2345 4 chr4D.!!$F1 2344
2 TraesCS4A01G413000 chr4B 603165440 603167426 1986 False 1154.000000 1857 88.73350 196 2353 2 chr4B.!!$F1 2157
3 TraesCS4A01G413000 chr6B 15918631 15928628 9997 True 999.666667 1022 84.86500 773 1780 3 chr6B.!!$R2 1007
4 TraesCS4A01G413000 chr6B 15889765 15904535 14770 True 994.250000 1005 84.72225 773 1780 4 chr6B.!!$R1 1007
5 TraesCS4A01G413000 chr6D 8732110 8733102 992 True 926.000000 926 84.09500 796 1765 1 chr6D.!!$R1 969
6 TraesCS4A01G413000 chr6D 8757766 8758902 1136 True 900.000000 900 81.95300 690 1768 1 chr6D.!!$R2 1078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 1211 1.67968 GAGACCGAATATGTCCGTCCA 59.32 52.381 0.0 0.0 35.71 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 16185 0.322008 CTGTGTGGAGGGGAAAGCTC 60.322 60.0 0.0 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 418 7.937649 ACTTAAAATGAGAAAACCAGTACCAC 58.062 34.615 0.00 0.00 0.00 4.16
69 436 8.902806 CAGTACCACATTATTGTTGGAATGTAT 58.097 33.333 10.99 0.00 42.89 2.29
74 441 7.223193 CCACATTATTGTTGGAATGTATTGCTG 59.777 37.037 0.27 0.00 42.89 4.41
79 446 5.798125 TGTTGGAATGTATTGCTGGAAAA 57.202 34.783 0.00 0.00 0.00 2.29
119 486 2.887151 ATGCAAGCTGGGAGTAGTTT 57.113 45.000 0.00 0.00 0.00 2.66
128 495 7.253422 CAAGCTGGGAGTAGTTTATTTTCATG 58.747 38.462 0.00 0.00 0.00 3.07
357 724 4.216472 TGCACACACACAAAGTTGAAACTA 59.784 37.500 0.00 0.00 38.57 2.24
413 780 3.705934 TTGTGGGCACTTGACGGCA 62.706 57.895 0.00 0.00 0.00 5.69
556 938 6.674694 ATGCATTAGACATGTCAAGTTCTC 57.325 37.500 27.02 10.33 0.00 2.87
587 969 4.024725 GTGTGGTGCATACGTAGTTCAAAA 60.025 41.667 0.08 0.00 37.78 2.44
664 1046 6.305693 AGGCGCTAAATTTTAAGATGCTAG 57.694 37.500 7.64 0.00 0.00 3.42
667 1049 6.017852 GGCGCTAAATTTTAAGATGCTAGAGT 60.018 38.462 7.64 0.00 0.00 3.24
784 1211 1.679680 GAGACCGAATATGTCCGTCCA 59.320 52.381 0.00 0.00 35.71 4.02
848 1293 3.331150 ACTTATGAACGATTTGCCGTGA 58.669 40.909 0.00 0.00 42.54 4.35
971 1453 1.688735 AGCAACCAAGAAAAAGAGGGC 59.311 47.619 0.00 0.00 0.00 5.19
1266 6489 2.943978 CGAGAAGGGCAAGGACGGT 61.944 63.158 0.00 0.00 0.00 4.83
1419 6642 2.063015 ATGCCAAGGTGGTGGACGAA 62.063 55.000 0.00 0.00 41.65 3.85
1425 6648 1.449601 GGTGGTGGACGAATGCGAT 60.450 57.895 0.00 0.00 41.64 4.58
1458 6681 0.172803 GCGACGAGGACCACAACTAT 59.827 55.000 0.00 0.00 0.00 2.12
1494 15744 2.503375 AACATCGTCGACGCGTCC 60.503 61.111 32.19 18.56 39.60 4.79
1570 15820 2.764007 TGGTCTGACCAGTGAGCAT 58.236 52.632 25.12 0.00 44.79 3.79
1582 15832 3.745975 CCAGTGAGCATCTTCGTTTTGTA 59.254 43.478 0.00 0.00 34.92 2.41
1583 15833 4.213270 CCAGTGAGCATCTTCGTTTTGTAA 59.787 41.667 0.00 0.00 34.92 2.41
1585 15835 5.621228 CAGTGAGCATCTTCGTTTTGTAAAC 59.379 40.000 0.00 0.00 34.92 2.01
1586 15836 4.909880 GTGAGCATCTTCGTTTTGTAAACC 59.090 41.667 0.00 0.00 34.92 3.27
1607 15875 4.395583 GTTGCTGGCTGTGCTCGC 62.396 66.667 0.00 0.00 0.00 5.03
1609 15877 4.710167 TGCTGGCTGTGCTCGCAT 62.710 61.111 0.00 0.00 31.60 4.73
1624 15892 0.439985 CGCATCACTTTGTCGGTCAG 59.560 55.000 0.00 0.00 0.00 3.51
1658 15927 9.529325 TGTATATAATTTTCGTTGTCAGAGAGG 57.471 33.333 0.00 0.00 0.00 3.69
1661 15930 2.440539 TTTCGTTGTCAGAGAGGAGC 57.559 50.000 0.00 0.00 0.00 4.70
1669 15939 2.292521 TGTCAGAGAGGAGCCCAGTTAT 60.293 50.000 0.00 0.00 0.00 1.89
1672 15942 2.630580 CAGAGAGGAGCCCAGTTATACC 59.369 54.545 0.00 0.00 0.00 2.73
1682 15952 5.202004 AGCCCAGTTATACCGATCCTATAG 58.798 45.833 0.00 0.00 0.00 1.31
1683 15953 4.341520 GCCCAGTTATACCGATCCTATAGG 59.658 50.000 13.07 13.07 0.00 2.57
1768 16047 1.129437 GCACCGATGAGAAGTTCTTGC 59.871 52.381 6.88 7.97 0.00 4.01
1799 16078 3.501349 TCTAACTGCCTCTCAACACTCT 58.499 45.455 0.00 0.00 0.00 3.24
1802 16081 2.042464 ACTGCCTCTCAACACTCTCAA 58.958 47.619 0.00 0.00 0.00 3.02
1823 16102 5.968848 TCAAAAACTGACGAACAAATAGTGC 59.031 36.000 0.00 0.00 0.00 4.40
1911 16195 2.158813 TGTATCCGATTGAGCTTTCCCC 60.159 50.000 0.00 0.00 0.00 4.81
1933 16217 1.267806 CCACACAGAACAAGCATCCAC 59.732 52.381 0.00 0.00 0.00 4.02
1936 16220 2.158769 ACACAGAACAAGCATCCACTGA 60.159 45.455 0.00 0.00 0.00 3.41
1952 16236 9.949174 GCATCCACTGAAAAATTTGTAATTTTT 57.051 25.926 17.86 17.86 42.02 1.94
1981 16265 9.297586 GATGTGTGTAGATTATTAACGAGTCAA 57.702 33.333 0.00 0.00 0.00 3.18
1988 16272 9.309516 GTAGATTATTAACGAGTCAAACATGGA 57.690 33.333 0.00 0.00 0.00 3.41
2034 16318 1.070134 TCACCTTGGAGTCTTCAACGG 59.930 52.381 7.47 7.47 0.00 4.44
2039 16323 0.971386 TGGAGTCTTCAACGGTACCC 59.029 55.000 6.25 0.00 0.00 3.69
2115 18202 1.369625 GACATACACCTTGGCTTCCG 58.630 55.000 0.00 0.00 0.00 4.30
2134 18221 3.453465 GAGCAGCTCGTCGTTGTC 58.547 61.111 6.67 0.00 0.00 3.18
2139 18226 0.109086 CAGCTCGTCGTTGTCCTCAT 60.109 55.000 0.00 0.00 0.00 2.90
2173 18260 0.249120 TCCACTTCGTGCTGGTATGG 59.751 55.000 0.00 0.00 31.34 2.74
2188 18276 1.971505 TATGGCTCTTGTCGCTGGGG 61.972 60.000 0.00 0.00 0.00 4.96
2253 18341 2.607187 CGTACACTTCCTGTCCACATC 58.393 52.381 0.00 0.00 33.91 3.06
2259 18347 0.613260 TTCCTGTCCACATCGAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
2303 18391 8.409358 AATTCTACATTCTTTACCACAAGCTT 57.591 30.769 0.00 0.00 0.00 3.74
2336 18424 5.119931 TGAATTAACCATGACAACTGCAC 57.880 39.130 0.00 0.00 0.00 4.57
2341 18429 2.229792 ACCATGACAACTGCACGAAAT 58.770 42.857 0.00 0.00 0.00 2.17
2345 18433 3.332761 TGACAACTGCACGAAATGAAC 57.667 42.857 0.00 0.00 0.00 3.18
2348 18436 4.211164 TGACAACTGCACGAAATGAACTAG 59.789 41.667 0.00 0.00 0.00 2.57
2353 18441 7.172532 ACAACTGCACGAAATGAACTAGATTTA 59.827 33.333 0.00 0.00 0.00 1.40
2354 18442 7.667043 ACTGCACGAAATGAACTAGATTTAA 57.333 32.000 0.00 0.00 0.00 1.52
2355 18443 7.743104 ACTGCACGAAATGAACTAGATTTAAG 58.257 34.615 0.00 0.00 0.00 1.85
2356 18444 7.602644 ACTGCACGAAATGAACTAGATTTAAGA 59.397 33.333 0.00 0.00 0.00 2.10
2357 18445 8.317891 TGCACGAAATGAACTAGATTTAAGAA 57.682 30.769 0.00 0.00 0.00 2.52
2358 18446 8.227791 TGCACGAAATGAACTAGATTTAAGAAC 58.772 33.333 0.00 0.00 0.00 3.01
2359 18447 8.227791 GCACGAAATGAACTAGATTTAAGAACA 58.772 33.333 0.00 0.00 0.00 3.18
2370 18458 8.887717 ACTAGATTTAAGAACAATCTCATGTGC 58.112 33.333 0.00 0.00 39.71 4.57
2371 18459 7.692460 AGATTTAAGAACAATCTCATGTGCA 57.308 32.000 0.00 0.00 36.42 4.57
2372 18460 8.289939 AGATTTAAGAACAATCTCATGTGCAT 57.710 30.769 0.00 0.00 36.42 3.96
2373 18461 8.746530 AGATTTAAGAACAATCTCATGTGCATT 58.253 29.630 0.00 0.00 36.42 3.56
2374 18462 9.362539 GATTTAAGAACAATCTCATGTGCATTT 57.637 29.630 0.00 0.00 33.77 2.32
2375 18463 8.746922 TTTAAGAACAATCTCATGTGCATTTC 57.253 30.769 0.00 0.00 33.77 2.17
2376 18464 5.970317 AGAACAATCTCATGTGCATTTCA 57.030 34.783 0.00 0.00 30.65 2.69
2377 18465 6.525578 AGAACAATCTCATGTGCATTTCAT 57.474 33.333 0.00 0.00 30.65 2.57
2378 18466 7.634671 AGAACAATCTCATGTGCATTTCATA 57.365 32.000 0.00 0.00 30.65 2.15
2379 18467 7.704271 AGAACAATCTCATGTGCATTTCATAG 58.296 34.615 0.00 0.00 30.65 2.23
2380 18468 7.338703 AGAACAATCTCATGTGCATTTCATAGT 59.661 33.333 0.00 0.00 30.65 2.12
2381 18469 8.510243 AACAATCTCATGTGCATTTCATAGTA 57.490 30.769 0.00 0.00 32.81 1.82
2382 18470 8.510243 ACAATCTCATGTGCATTTCATAGTAA 57.490 30.769 0.00 0.00 30.82 2.24
2383 18471 9.128404 ACAATCTCATGTGCATTTCATAGTAAT 57.872 29.630 0.00 0.00 30.82 1.89
2384 18472 9.394477 CAATCTCATGTGCATTTCATAGTAATG 57.606 33.333 0.00 0.00 36.34 1.90
2385 18473 8.913487 ATCTCATGTGCATTTCATAGTAATGA 57.087 30.769 0.00 0.00 40.43 2.57
2424 18512 8.719645 ATTATAGAATGAAGAGGCTAGTGACT 57.280 34.615 0.00 0.00 0.00 3.41
2425 18513 9.815306 ATTATAGAATGAAGAGGCTAGTGACTA 57.185 33.333 0.00 0.00 0.00 2.59
2426 18514 9.642343 TTATAGAATGAAGAGGCTAGTGACTAA 57.358 33.333 0.00 0.00 0.00 2.24
2427 18515 6.463995 AGAATGAAGAGGCTAGTGACTAAG 57.536 41.667 0.00 0.00 0.00 2.18
2428 18516 4.664150 ATGAAGAGGCTAGTGACTAAGC 57.336 45.455 0.00 0.00 0.00 3.09
2429 18517 3.702792 TGAAGAGGCTAGTGACTAAGCT 58.297 45.455 11.75 0.00 0.00 3.74
2430 18518 3.445450 TGAAGAGGCTAGTGACTAAGCTG 59.555 47.826 11.75 0.00 0.00 4.24
2431 18519 2.383855 AGAGGCTAGTGACTAAGCTGG 58.616 52.381 11.75 0.00 0.00 4.85
2432 18520 2.104170 GAGGCTAGTGACTAAGCTGGT 58.896 52.381 11.75 0.00 0.00 4.00
2433 18521 2.100087 GAGGCTAGTGACTAAGCTGGTC 59.900 54.545 11.71 11.71 0.00 4.02
2434 18522 2.104170 GGCTAGTGACTAAGCTGGTCT 58.896 52.381 17.28 4.95 35.04 3.85
2435 18523 2.100087 GGCTAGTGACTAAGCTGGTCTC 59.900 54.545 17.28 14.44 35.04 3.36
2436 18524 2.755655 GCTAGTGACTAAGCTGGTCTCA 59.244 50.000 17.28 1.60 35.04 3.27
2437 18525 3.181491 GCTAGTGACTAAGCTGGTCTCAG 60.181 52.174 17.28 14.17 43.64 3.35
2438 18526 3.162147 AGTGACTAAGCTGGTCTCAGA 57.838 47.619 17.28 0.00 43.49 3.27
2439 18527 3.707316 AGTGACTAAGCTGGTCTCAGAT 58.293 45.455 17.28 0.00 43.49 2.90
2441 18529 5.265191 AGTGACTAAGCTGGTCTCAGATTA 58.735 41.667 17.28 4.42 46.40 1.75
2442 18530 5.717178 AGTGACTAAGCTGGTCTCAGATTAA 59.283 40.000 17.28 0.00 46.90 1.40
2443 18531 6.039616 GTGACTAAGCTGGTCTCAGATTAAG 58.960 44.000 17.28 3.68 46.90 1.85
2444 18532 5.127845 TGACTAAGCTGGTCTCAGATTAAGG 59.872 44.000 17.28 0.00 46.90 2.69
2445 18533 5.026790 ACTAAGCTGGTCTCAGATTAAGGT 58.973 41.667 5.76 0.00 46.90 3.50
2446 18534 3.902881 AGCTGGTCTCAGATTAAGGTG 57.097 47.619 0.00 0.00 43.49 4.00
2447 18535 3.177228 AGCTGGTCTCAGATTAAGGTGT 58.823 45.455 0.00 0.00 43.49 4.16
2448 18536 3.055530 AGCTGGTCTCAGATTAAGGTGTG 60.056 47.826 0.00 0.00 43.49 3.82
2449 18537 3.055819 GCTGGTCTCAGATTAAGGTGTGA 60.056 47.826 0.00 0.00 43.49 3.58
2450 18538 4.753233 CTGGTCTCAGATTAAGGTGTGAG 58.247 47.826 0.00 0.00 43.49 3.51
2451 18539 4.416516 TGGTCTCAGATTAAGGTGTGAGA 58.583 43.478 2.62 2.62 43.67 3.27
2452 18540 4.838423 TGGTCTCAGATTAAGGTGTGAGAA 59.162 41.667 7.33 0.00 46.19 2.87
2453 18541 5.485353 TGGTCTCAGATTAAGGTGTGAGAAT 59.515 40.000 7.33 0.00 46.19 2.40
2454 18542 5.814705 GGTCTCAGATTAAGGTGTGAGAATG 59.185 44.000 7.33 0.00 46.19 2.67
2455 18543 6.351371 GGTCTCAGATTAAGGTGTGAGAATGA 60.351 42.308 7.33 0.00 46.19 2.57
2456 18544 7.271511 GTCTCAGATTAAGGTGTGAGAATGAT 58.728 38.462 7.33 0.00 46.19 2.45
2457 18545 8.417106 GTCTCAGATTAAGGTGTGAGAATGATA 58.583 37.037 7.33 0.00 46.19 2.15
2458 18546 8.981659 TCTCAGATTAAGGTGTGAGAATGATAA 58.018 33.333 4.00 0.00 43.14 1.75
2459 18547 9.605275 CTCAGATTAAGGTGTGAGAATGATAAA 57.395 33.333 0.00 0.00 40.80 1.40
2460 18548 9.383519 TCAGATTAAGGTGTGAGAATGATAAAC 57.616 33.333 0.00 0.00 0.00 2.01
2461 18549 8.616076 CAGATTAAGGTGTGAGAATGATAAACC 58.384 37.037 0.00 0.00 0.00 3.27
2462 18550 8.328758 AGATTAAGGTGTGAGAATGATAAACCA 58.671 33.333 0.00 0.00 0.00 3.67
2463 18551 8.877864 ATTAAGGTGTGAGAATGATAAACCAA 57.122 30.769 0.00 0.00 0.00 3.67
2464 18552 8.877864 TTAAGGTGTGAGAATGATAAACCAAT 57.122 30.769 0.00 0.00 0.00 3.16
2465 18553 9.967451 TTAAGGTGTGAGAATGATAAACCAATA 57.033 29.630 0.00 0.00 0.00 1.90
2467 18555 8.682936 AGGTGTGAGAATGATAAACCAATATC 57.317 34.615 0.00 0.00 33.71 1.63
2468 18556 8.274322 AGGTGTGAGAATGATAAACCAATATCA 58.726 33.333 0.00 0.00 44.16 2.15
2469 18557 8.562892 GGTGTGAGAATGATAAACCAATATCAG 58.437 37.037 3.71 0.00 43.50 2.90
2470 18558 8.072567 GTGTGAGAATGATAAACCAATATCAGC 58.927 37.037 3.71 0.00 43.50 4.26
2471 18559 7.774625 TGTGAGAATGATAAACCAATATCAGCA 59.225 33.333 3.71 0.00 43.50 4.41
2472 18560 8.072567 GTGAGAATGATAAACCAATATCAGCAC 58.927 37.037 3.71 5.44 43.50 4.40
2473 18561 7.774625 TGAGAATGATAAACCAATATCAGCACA 59.225 33.333 3.71 1.53 43.50 4.57
2474 18562 8.701908 AGAATGATAAACCAATATCAGCACAT 57.298 30.769 3.71 0.00 43.50 3.21
2475 18563 9.139734 AGAATGATAAACCAATATCAGCACATT 57.860 29.630 0.00 0.00 43.50 2.71
2476 18564 9.403110 GAATGATAAACCAATATCAGCACATTC 57.597 33.333 0.00 0.00 43.50 2.67
2477 18565 7.878547 TGATAAACCAATATCAGCACATTCA 57.121 32.000 0.00 0.00 37.37 2.57
2478 18566 8.291191 TGATAAACCAATATCAGCACATTCAA 57.709 30.769 0.00 0.00 37.37 2.69
2479 18567 8.916062 TGATAAACCAATATCAGCACATTCAAT 58.084 29.630 0.00 0.00 37.37 2.57
2480 18568 9.188588 GATAAACCAATATCAGCACATTCAATG 57.811 33.333 0.00 0.00 33.39 2.82
2481 18569 5.524971 ACCAATATCAGCACATTCAATGG 57.475 39.130 1.58 0.00 33.60 3.16
2482 18570 4.342951 ACCAATATCAGCACATTCAATGGG 59.657 41.667 1.58 0.00 36.54 4.00
2483 18571 4.342951 CCAATATCAGCACATTCAATGGGT 59.657 41.667 0.51 0.00 35.65 4.51
2484 18572 5.535783 CCAATATCAGCACATTCAATGGGTA 59.464 40.000 0.51 0.00 35.65 3.69
2485 18573 6.209986 CCAATATCAGCACATTCAATGGGTAT 59.790 38.462 0.51 0.00 35.65 2.73
2486 18574 7.256048 CCAATATCAGCACATTCAATGGGTATT 60.256 37.037 0.51 0.00 35.65 1.89
2487 18575 4.987408 TCAGCACATTCAATGGGTATTG 57.013 40.909 0.51 0.00 44.03 1.90
2488 18576 3.130869 TCAGCACATTCAATGGGTATTGC 59.869 43.478 0.51 1.61 42.71 3.56
2489 18577 3.098377 AGCACATTCAATGGGTATTGCA 58.902 40.909 11.34 0.00 42.71 4.08
2490 18578 3.514706 AGCACATTCAATGGGTATTGCAA 59.485 39.130 0.00 0.00 42.71 4.08
2491 18579 3.866910 GCACATTCAATGGGTATTGCAAG 59.133 43.478 4.94 0.00 42.71 4.01
2492 18580 3.866910 CACATTCAATGGGTATTGCAAGC 59.133 43.478 4.94 0.00 42.71 4.01
2493 18581 3.514706 ACATTCAATGGGTATTGCAAGCA 59.485 39.130 4.94 0.00 42.71 3.91
2494 18582 4.162698 ACATTCAATGGGTATTGCAAGCAT 59.837 37.500 4.94 0.00 42.71 3.79
2495 18583 3.804786 TCAATGGGTATTGCAAGCATG 57.195 42.857 4.94 0.00 42.71 4.06
2496 18584 3.098377 TCAATGGGTATTGCAAGCATGT 58.902 40.909 4.94 0.00 42.71 3.21
2497 18585 4.276642 TCAATGGGTATTGCAAGCATGTA 58.723 39.130 4.94 0.00 42.71 2.29
2498 18586 4.708909 TCAATGGGTATTGCAAGCATGTAA 59.291 37.500 4.94 0.00 42.71 2.41
2499 18587 5.186603 TCAATGGGTATTGCAAGCATGTAAA 59.813 36.000 4.94 0.00 42.71 2.01
2500 18588 5.874897 ATGGGTATTGCAAGCATGTAAAT 57.125 34.783 4.94 0.00 34.73 1.40
2501 18589 5.674052 TGGGTATTGCAAGCATGTAAATT 57.326 34.783 4.94 0.00 34.73 1.82
2502 18590 6.782082 TGGGTATTGCAAGCATGTAAATTA 57.218 33.333 4.94 0.00 34.73 1.40
2503 18591 6.568869 TGGGTATTGCAAGCATGTAAATTAC 58.431 36.000 4.94 0.00 34.73 1.89
2504 18592 6.379703 TGGGTATTGCAAGCATGTAAATTACT 59.620 34.615 4.94 0.00 34.73 2.24
2505 18593 7.558081 TGGGTATTGCAAGCATGTAAATTACTA 59.442 33.333 4.94 0.00 34.73 1.82
2506 18594 8.076178 GGGTATTGCAAGCATGTAAATTACTAG 58.924 37.037 4.94 0.00 34.73 2.57
2507 18595 7.591426 GGTATTGCAAGCATGTAAATTACTAGC 59.409 37.037 4.94 8.20 34.73 3.42
2508 18596 6.757897 TTGCAAGCATGTAAATTACTAGCT 57.242 33.333 14.00 14.00 39.76 3.32
2509 18597 6.363577 TGCAAGCATGTAAATTACTAGCTC 57.636 37.500 17.97 10.58 38.10 4.09
2510 18598 5.879777 TGCAAGCATGTAAATTACTAGCTCA 59.120 36.000 17.97 12.33 38.10 4.26
2511 18599 6.374053 TGCAAGCATGTAAATTACTAGCTCAA 59.626 34.615 17.97 8.43 38.10 3.02
2512 18600 6.688813 GCAAGCATGTAAATTACTAGCTCAAC 59.311 38.462 17.97 10.26 38.10 3.18
2513 18601 7.414540 GCAAGCATGTAAATTACTAGCTCAACT 60.415 37.037 17.97 5.44 38.10 3.16
2514 18602 7.545362 AGCATGTAAATTACTAGCTCAACTG 57.455 36.000 14.00 0.00 35.63 3.16
2515 18603 7.106239 AGCATGTAAATTACTAGCTCAACTGT 58.894 34.615 14.00 0.00 35.63 3.55
2516 18604 7.065085 AGCATGTAAATTACTAGCTCAACTGTG 59.935 37.037 14.00 0.00 35.63 3.66
2517 18605 7.064609 GCATGTAAATTACTAGCTCAACTGTGA 59.935 37.037 4.67 0.00 0.00 3.58
2534 18622 2.898705 GTGAGCACACAAGCTATAGCT 58.101 47.619 21.82 21.82 46.75 3.32
2535 18623 4.046938 GTGAGCACACAAGCTATAGCTA 57.953 45.455 27.11 5.82 46.75 3.32
2536 18624 4.433615 GTGAGCACACAAGCTATAGCTAA 58.566 43.478 27.11 2.87 46.75 3.09
2537 18625 4.505922 GTGAGCACACAAGCTATAGCTAAG 59.494 45.833 27.11 22.95 46.75 2.18
2538 18626 5.679894 GTGAGCACACAAGCTATAGCTAAGA 60.680 44.000 27.11 3.46 46.75 2.10
2539 18627 6.958296 GTGAGCACACAAGCTATAGCTAAGAT 60.958 42.308 27.11 13.73 46.75 2.40
2540 18628 7.735746 GTGAGCACACAAGCTATAGCTAAGATA 60.736 40.741 27.11 5.86 46.75 1.98
2551 18639 8.990163 GCTATAGCTAAGATAGGAGAATAGGT 57.010 38.462 17.75 0.00 38.21 3.08
2552 18640 9.416284 GCTATAGCTAAGATAGGAGAATAGGTT 57.584 37.037 17.75 0.00 38.21 3.50
2554 18642 8.832458 ATAGCTAAGATAGGAGAATAGGTTCC 57.168 38.462 0.00 0.00 34.81 3.62
2555 18643 6.020389 AGCTAAGATAGGAGAATAGGTTCCC 58.980 44.000 0.00 0.00 34.81 3.97
2556 18644 5.188163 GCTAAGATAGGAGAATAGGTTCCCC 59.812 48.000 0.00 0.00 34.81 4.81
2557 18645 4.852991 AGATAGGAGAATAGGTTCCCCA 57.147 45.455 0.00 0.00 34.84 4.96
2558 18646 5.376653 AGATAGGAGAATAGGTTCCCCAT 57.623 43.478 0.00 0.00 34.84 4.00
2559 18647 6.500490 AGATAGGAGAATAGGTTCCCCATA 57.500 41.667 0.00 0.00 34.84 2.74
2560 18648 6.886637 AGATAGGAGAATAGGTTCCCCATAA 58.113 40.000 0.00 0.00 34.84 1.90
2561 18649 6.731448 AGATAGGAGAATAGGTTCCCCATAAC 59.269 42.308 0.00 0.00 34.84 1.89
2562 18650 4.909284 AGGAGAATAGGTTCCCCATAACT 58.091 43.478 0.00 0.00 34.84 2.24
2563 18651 4.908481 AGGAGAATAGGTTCCCCATAACTC 59.092 45.833 0.00 0.00 34.84 3.01
2564 18652 4.041815 GGAGAATAGGTTCCCCATAACTCC 59.958 50.000 0.00 0.00 32.78 3.85
2565 18653 4.908481 GAGAATAGGTTCCCCATAACTCCT 59.092 45.833 0.00 0.00 34.81 3.69
2566 18654 5.297799 AGAATAGGTTCCCCATAACTCCTT 58.702 41.667 0.00 0.00 34.81 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.432869 TCATTTTAAGTTCTTGTGGGTGATTG 58.567 34.615 0.00 0.00 0.00 2.67
12 13 7.505585 TCTCATTTTAAGTTCTTGTGGGTGATT 59.494 33.333 0.00 0.00 0.00 2.57
13 14 7.004086 TCTCATTTTAAGTTCTTGTGGGTGAT 58.996 34.615 0.00 0.00 0.00 3.06
14 15 6.361433 TCTCATTTTAAGTTCTTGTGGGTGA 58.639 36.000 0.00 0.00 0.00 4.02
51 418 7.490840 TCCAGCAATACATTCCAACAATAATG 58.509 34.615 0.00 0.00 38.71 1.90
69 436 3.513515 ACACCTTTCAACTTTTCCAGCAA 59.486 39.130 0.00 0.00 0.00 3.91
74 441 4.173256 CACACACACCTTTCAACTTTTCC 58.827 43.478 0.00 0.00 0.00 3.13
79 446 1.832883 TGCACACACACCTTTCAACT 58.167 45.000 0.00 0.00 0.00 3.16
106 473 5.125417 TGCATGAAAATAAACTACTCCCAGC 59.875 40.000 0.00 0.00 0.00 4.85
108 475 6.405731 GCATGCATGAAAATAAACTACTCCCA 60.406 38.462 30.64 0.00 0.00 4.37
357 724 6.950842 TCATCTTAGAGTTGGTGATGATGTT 58.049 36.000 0.00 0.00 38.67 2.71
413 780 5.562696 CGTGGTAAAAGTGCATGAATCAACT 60.563 40.000 0.00 0.00 0.00 3.16
529 911 7.989170 AGAACTTGACATGTCTAATGCATATGA 59.011 33.333 25.55 5.58 0.00 2.15
530 912 8.151141 AGAACTTGACATGTCTAATGCATATG 57.849 34.615 25.55 1.79 0.00 1.78
531 913 7.989170 TGAGAACTTGACATGTCTAATGCATAT 59.011 33.333 25.55 4.78 0.00 1.78
532 914 7.330262 TGAGAACTTGACATGTCTAATGCATA 58.670 34.615 25.55 0.62 0.00 3.14
533 915 6.175471 TGAGAACTTGACATGTCTAATGCAT 58.825 36.000 25.55 7.42 0.00 3.96
534 916 5.550290 TGAGAACTTGACATGTCTAATGCA 58.450 37.500 25.55 12.42 0.00 3.96
535 917 6.486253 TTGAGAACTTGACATGTCTAATGC 57.514 37.500 25.55 8.02 0.00 3.56
539 921 9.725019 ACATTAATTGAGAACTTGACATGTCTA 57.275 29.630 25.55 17.74 0.00 2.59
540 922 8.509690 CACATTAATTGAGAACTTGACATGTCT 58.490 33.333 25.55 6.21 0.00 3.41
541 923 8.292448 ACACATTAATTGAGAACTTGACATGTC 58.708 33.333 19.27 19.27 0.00 3.06
542 924 8.077991 CACACATTAATTGAGAACTTGACATGT 58.922 33.333 0.00 0.00 0.00 3.21
543 925 7.539710 CCACACATTAATTGAGAACTTGACATG 59.460 37.037 0.00 0.00 0.00 3.21
544 926 7.231317 ACCACACATTAATTGAGAACTTGACAT 59.769 33.333 0.00 0.00 0.00 3.06
545 927 6.545666 ACCACACATTAATTGAGAACTTGACA 59.454 34.615 0.00 0.00 0.00 3.58
546 928 6.857964 CACCACACATTAATTGAGAACTTGAC 59.142 38.462 0.00 0.00 0.00 3.18
556 938 4.980590 ACGTATGCACCACACATTAATTG 58.019 39.130 0.00 0.00 0.00 2.32
587 969 0.886563 GCTTCTGCATGCAAACTCCT 59.113 50.000 22.88 0.00 39.41 3.69
642 1024 6.017852 ACTCTAGCATCTTAAAATTTAGCGCC 60.018 38.462 2.29 0.00 0.00 6.53
664 1046 0.469144 TTGGCACCCTTTTCCCACTC 60.469 55.000 0.00 0.00 0.00 3.51
667 1049 0.031616 ACTTTGGCACCCTTTTCCCA 60.032 50.000 0.00 0.00 0.00 4.37
848 1293 3.828451 ACACCAATTAGTTGCATGCTCTT 59.172 39.130 20.33 6.44 33.90 2.85
971 1453 5.175856 GCTACTGAACACACTTGAACTGTAG 59.824 44.000 0.00 0.00 37.18 2.74
1212 6435 4.514585 ACGGCCTTGGTGGTTGCA 62.515 61.111 0.00 0.00 38.35 4.08
1215 6438 1.528309 CAAGACGGCCTTGGTGGTT 60.528 57.895 0.00 0.00 46.54 3.67
1266 6489 4.100084 CACTCTGATGGGCCGCCA 62.100 66.667 12.58 0.00 0.00 5.69
1419 6642 0.106708 AGCCATACACGGAATCGCAT 59.893 50.000 0.00 0.00 40.63 4.73
1425 6648 1.447140 GTCGCAGCCATACACGGAA 60.447 57.895 0.00 0.00 0.00 4.30
1570 15820 5.632959 CAACTGTGGTTTACAAAACGAAGA 58.367 37.500 0.00 0.00 39.20 2.87
1582 15832 0.684153 ACAGCCAGCAACTGTGGTTT 60.684 50.000 5.60 0.00 46.38 3.27
1583 15833 1.076777 ACAGCCAGCAACTGTGGTT 60.077 52.632 5.60 0.00 46.38 3.67
1607 15875 2.733552 CACTCTGACCGACAAAGTGATG 59.266 50.000 9.35 0.00 46.87 3.07
1609 15877 1.754803 ACACTCTGACCGACAAAGTGA 59.245 47.619 17.92 0.00 46.87 3.41
1658 15927 2.249139 AGGATCGGTATAACTGGGCTC 58.751 52.381 0.00 0.00 0.00 4.70
1661 15930 4.894114 CCCTATAGGATCGGTATAACTGGG 59.106 50.000 21.07 0.00 38.24 4.45
1669 15939 1.928077 CCTCCCCCTATAGGATCGGTA 59.072 57.143 21.07 0.00 38.24 4.02
1672 15942 1.358103 TGACCTCCCCCTATAGGATCG 59.642 57.143 21.07 6.85 38.24 3.69
1682 15952 5.964477 TCATATACATAATCTGACCTCCCCC 59.036 44.000 0.00 0.00 0.00 5.40
1683 15953 7.682787 ATCATATACATAATCTGACCTCCCC 57.317 40.000 0.00 0.00 0.00 4.81
1768 16047 3.119316 AGAGGCAGTTAGAAGATCACACG 60.119 47.826 0.00 0.00 0.00 4.49
1799 16078 5.968848 GCACTATTTGTTCGTCAGTTTTTGA 59.031 36.000 0.00 0.00 0.00 2.69
1802 16081 5.493133 TGCACTATTTGTTCGTCAGTTTT 57.507 34.783 0.00 0.00 0.00 2.43
1823 16102 8.410141 TGTTATGGGAGTAAAGTTGTTTCTTTG 58.590 33.333 0.00 0.00 38.02 2.77
1891 16170 2.104963 AGGGGAAAGCTCAATCGGATAC 59.895 50.000 0.00 0.00 0.00 2.24
1901 16185 0.322008 CTGTGTGGAGGGGAAAGCTC 60.322 60.000 0.00 0.00 0.00 4.09
1911 16195 1.808945 GGATGCTTGTTCTGTGTGGAG 59.191 52.381 0.00 0.00 0.00 3.86
1952 16236 8.683615 ACTCGTTAATAATCTACACACATCTCA 58.316 33.333 0.00 0.00 0.00 3.27
1953 16237 9.171701 GACTCGTTAATAATCTACACACATCTC 57.828 37.037 0.00 0.00 0.00 2.75
1974 16258 7.728847 TTATCCAATATCCATGTTTGACTCG 57.271 36.000 0.00 0.00 0.00 4.18
1981 16265 7.696981 AGCTCTCATTATCCAATATCCATGTT 58.303 34.615 0.00 0.00 0.00 2.71
1988 16272 9.804977 AGCTTTTTAGCTCTCATTATCCAATAT 57.195 29.630 0.00 0.00 42.12 1.28
2034 16318 1.674962 ACTCTTCGAGTATGCGGGTAC 59.325 52.381 0.00 0.00 41.51 3.34
2060 16344 3.055819 ACGACATTGACAGCCTGTATCTT 60.056 43.478 0.00 0.00 0.00 2.40
2131 18218 6.892456 GGATGAGGAGTATATGTATGAGGACA 59.108 42.308 0.00 0.00 0.00 4.02
2134 18221 6.894654 AGTGGATGAGGAGTATATGTATGAGG 59.105 42.308 0.00 0.00 0.00 3.86
2139 18226 6.304624 ACGAAGTGGATGAGGAGTATATGTA 58.695 40.000 0.00 0.00 42.51 2.29
2188 18276 3.541713 CTCCTAGAGGCGCCACCC 61.542 72.222 31.54 17.29 40.58 4.61
2253 18341 1.541147 TGCTTTTCTGATTGCCCTTCG 59.459 47.619 0.00 0.00 0.00 3.79
2259 18347 6.331061 AGAATTCTCATGCTTTTCTGATTGC 58.669 36.000 0.88 0.00 0.00 3.56
2345 18433 8.886719 TGCACATGAGATTGTTCTTAAATCTAG 58.113 33.333 0.00 0.00 42.94 2.43
2348 18436 8.922058 AATGCACATGAGATTGTTCTTAAATC 57.078 30.769 0.00 0.00 34.80 2.17
2353 18441 6.335471 TGAAATGCACATGAGATTGTTCTT 57.665 33.333 0.00 0.00 30.30 2.52
2354 18442 5.970317 TGAAATGCACATGAGATTGTTCT 57.030 34.783 0.00 0.00 33.88 3.01
2355 18443 7.478322 ACTATGAAATGCACATGAGATTGTTC 58.522 34.615 0.00 0.00 0.00 3.18
2356 18444 7.400599 ACTATGAAATGCACATGAGATTGTT 57.599 32.000 0.00 0.00 0.00 2.83
2357 18445 8.510243 TTACTATGAAATGCACATGAGATTGT 57.490 30.769 0.00 0.00 0.00 2.71
2358 18446 9.394477 CATTACTATGAAATGCACATGAGATTG 57.606 33.333 0.00 0.00 33.37 2.67
2359 18447 9.346005 TCATTACTATGAAATGCACATGAGATT 57.654 29.630 0.00 0.00 37.83 2.40
2360 18448 8.913487 TCATTACTATGAAATGCACATGAGAT 57.087 30.769 0.00 0.00 37.83 2.75
2361 18449 8.735692 TTCATTACTATGAAATGCACATGAGA 57.264 30.769 0.00 0.00 45.38 3.27
2398 18486 9.815306 AGTCACTAGCCTCTTCATTCTATAATA 57.185 33.333 0.00 0.00 0.00 0.98
2399 18487 8.719645 AGTCACTAGCCTCTTCATTCTATAAT 57.280 34.615 0.00 0.00 0.00 1.28
2400 18488 9.642343 TTAGTCACTAGCCTCTTCATTCTATAA 57.358 33.333 0.00 0.00 0.00 0.98
2401 18489 9.290988 CTTAGTCACTAGCCTCTTCATTCTATA 57.709 37.037 0.00 0.00 0.00 1.31
2402 18490 7.255801 GCTTAGTCACTAGCCTCTTCATTCTAT 60.256 40.741 0.00 0.00 0.00 1.98
2403 18491 6.039941 GCTTAGTCACTAGCCTCTTCATTCTA 59.960 42.308 0.00 0.00 0.00 2.10
2404 18492 5.163457 GCTTAGTCACTAGCCTCTTCATTCT 60.163 44.000 0.00 0.00 0.00 2.40
2405 18493 5.047188 GCTTAGTCACTAGCCTCTTCATTC 58.953 45.833 0.00 0.00 0.00 2.67
2406 18494 4.714308 AGCTTAGTCACTAGCCTCTTCATT 59.286 41.667 0.00 0.00 0.00 2.57
2407 18495 4.099266 CAGCTTAGTCACTAGCCTCTTCAT 59.901 45.833 0.00 0.00 0.00 2.57
2408 18496 3.445450 CAGCTTAGTCACTAGCCTCTTCA 59.555 47.826 0.00 0.00 0.00 3.02
2409 18497 3.181480 CCAGCTTAGTCACTAGCCTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
2410 18498 2.763448 CCAGCTTAGTCACTAGCCTCTT 59.237 50.000 0.00 0.00 0.00 2.85
2411 18499 2.291930 ACCAGCTTAGTCACTAGCCTCT 60.292 50.000 0.00 0.00 0.00 3.69
2412 18500 2.100087 GACCAGCTTAGTCACTAGCCTC 59.900 54.545 8.48 0.00 34.27 4.70
2413 18501 2.104170 GACCAGCTTAGTCACTAGCCT 58.896 52.381 8.48 0.00 34.27 4.58
2414 18502 2.100087 GAGACCAGCTTAGTCACTAGCC 59.900 54.545 14.50 0.00 36.68 3.93
2415 18503 2.755655 TGAGACCAGCTTAGTCACTAGC 59.244 50.000 14.50 0.00 36.68 3.42
2416 18504 4.265893 TCTGAGACCAGCTTAGTCACTAG 58.734 47.826 14.50 9.67 40.20 2.57
2417 18505 4.302559 TCTGAGACCAGCTTAGTCACTA 57.697 45.455 14.50 0.00 40.20 2.74
2418 18506 3.162147 TCTGAGACCAGCTTAGTCACT 57.838 47.619 14.50 0.00 40.20 3.41
2419 18507 4.464069 AATCTGAGACCAGCTTAGTCAC 57.536 45.455 14.50 9.54 40.20 3.67
2420 18508 5.127845 CCTTAATCTGAGACCAGCTTAGTCA 59.872 44.000 14.50 1.38 40.20 3.41
2421 18509 5.128008 ACCTTAATCTGAGACCAGCTTAGTC 59.872 44.000 5.64 5.64 40.20 2.59
2422 18510 5.026790 ACCTTAATCTGAGACCAGCTTAGT 58.973 41.667 0.00 0.00 40.20 2.24
2423 18511 5.105146 ACACCTTAATCTGAGACCAGCTTAG 60.105 44.000 0.00 0.00 40.20 2.18
2424 18512 4.777896 ACACCTTAATCTGAGACCAGCTTA 59.222 41.667 0.00 0.00 40.20 3.09
2425 18513 3.584848 ACACCTTAATCTGAGACCAGCTT 59.415 43.478 0.00 0.00 40.20 3.74
2426 18514 3.055530 CACACCTTAATCTGAGACCAGCT 60.056 47.826 0.00 0.00 40.20 4.24
2427 18515 3.055819 TCACACCTTAATCTGAGACCAGC 60.056 47.826 0.00 0.00 40.20 4.85
2428 18516 4.464244 TCTCACACCTTAATCTGAGACCAG 59.536 45.833 0.00 0.00 41.74 4.00
2429 18517 4.416516 TCTCACACCTTAATCTGAGACCA 58.583 43.478 0.00 0.00 35.34 4.02
2430 18518 5.407407 TTCTCACACCTTAATCTGAGACC 57.593 43.478 0.00 0.00 39.06 3.85
2431 18519 6.634805 TCATTCTCACACCTTAATCTGAGAC 58.365 40.000 0.00 0.00 39.06 3.36
2432 18520 6.857437 TCATTCTCACACCTTAATCTGAGA 57.143 37.500 0.00 0.00 37.88 3.27
2433 18521 9.605275 TTTATCATTCTCACACCTTAATCTGAG 57.395 33.333 0.00 0.00 32.86 3.35
2434 18522 9.383519 GTTTATCATTCTCACACCTTAATCTGA 57.616 33.333 0.00 0.00 0.00 3.27
2435 18523 8.616076 GGTTTATCATTCTCACACCTTAATCTG 58.384 37.037 0.00 0.00 0.00 2.90
2436 18524 8.328758 TGGTTTATCATTCTCACACCTTAATCT 58.671 33.333 0.00 0.00 0.00 2.40
2437 18525 8.506168 TGGTTTATCATTCTCACACCTTAATC 57.494 34.615 0.00 0.00 0.00 1.75
2438 18526 8.877864 TTGGTTTATCATTCTCACACCTTAAT 57.122 30.769 0.00 0.00 0.00 1.40
2439 18527 8.877864 ATTGGTTTATCATTCTCACACCTTAA 57.122 30.769 0.00 0.00 0.00 1.85
2441 18529 9.125026 GATATTGGTTTATCATTCTCACACCTT 57.875 33.333 0.00 0.00 0.00 3.50
2442 18530 8.274322 TGATATTGGTTTATCATTCTCACACCT 58.726 33.333 0.00 0.00 34.46 4.00
2443 18531 8.450578 TGATATTGGTTTATCATTCTCACACC 57.549 34.615 0.00 0.00 34.46 4.16
2444 18532 8.072567 GCTGATATTGGTTTATCATTCTCACAC 58.927 37.037 0.00 0.00 37.81 3.82
2445 18533 7.774625 TGCTGATATTGGTTTATCATTCTCACA 59.225 33.333 0.00 0.00 37.81 3.58
2446 18534 8.072567 GTGCTGATATTGGTTTATCATTCTCAC 58.927 37.037 0.00 0.00 37.81 3.51
2447 18535 7.774625 TGTGCTGATATTGGTTTATCATTCTCA 59.225 33.333 0.00 0.00 37.81 3.27
2448 18536 8.158169 TGTGCTGATATTGGTTTATCATTCTC 57.842 34.615 0.00 0.00 37.81 2.87
2449 18537 8.701908 ATGTGCTGATATTGGTTTATCATTCT 57.298 30.769 0.00 0.00 37.81 2.40
2450 18538 9.403110 GAATGTGCTGATATTGGTTTATCATTC 57.597 33.333 0.00 0.00 37.81 2.67
2451 18539 8.916062 TGAATGTGCTGATATTGGTTTATCATT 58.084 29.630 0.00 0.00 37.81 2.57
2452 18540 8.467963 TGAATGTGCTGATATTGGTTTATCAT 57.532 30.769 0.00 0.00 37.81 2.45
2453 18541 7.878547 TGAATGTGCTGATATTGGTTTATCA 57.121 32.000 0.00 0.00 36.48 2.15
2454 18542 9.188588 CATTGAATGTGCTGATATTGGTTTATC 57.811 33.333 0.00 0.00 0.00 1.75
2455 18543 8.145767 CCATTGAATGTGCTGATATTGGTTTAT 58.854 33.333 4.27 0.00 0.00 1.40
2456 18544 7.417683 CCCATTGAATGTGCTGATATTGGTTTA 60.418 37.037 4.27 0.00 0.00 2.01
2457 18545 6.342906 CCATTGAATGTGCTGATATTGGTTT 58.657 36.000 4.27 0.00 0.00 3.27
2458 18546 5.163385 CCCATTGAATGTGCTGATATTGGTT 60.163 40.000 4.27 0.00 0.00 3.67
2459 18547 4.342951 CCCATTGAATGTGCTGATATTGGT 59.657 41.667 4.27 0.00 0.00 3.67
2460 18548 4.342951 ACCCATTGAATGTGCTGATATTGG 59.657 41.667 4.27 0.00 0.00 3.16
2461 18549 5.524971 ACCCATTGAATGTGCTGATATTG 57.475 39.130 4.27 0.00 0.00 1.90
2462 18550 7.663827 CAATACCCATTGAATGTGCTGATATT 58.336 34.615 4.27 0.00 43.67 1.28
2463 18551 6.294899 GCAATACCCATTGAATGTGCTGATAT 60.295 38.462 9.58 0.00 43.67 1.63
2464 18552 5.009911 GCAATACCCATTGAATGTGCTGATA 59.990 40.000 9.58 0.00 43.67 2.15
2465 18553 4.202182 GCAATACCCATTGAATGTGCTGAT 60.202 41.667 9.58 0.00 43.67 2.90
2466 18554 3.130869 GCAATACCCATTGAATGTGCTGA 59.869 43.478 9.58 0.00 43.67 4.26
2467 18555 3.119065 TGCAATACCCATTGAATGTGCTG 60.119 43.478 15.57 1.46 43.67 4.41
2468 18556 3.098377 TGCAATACCCATTGAATGTGCT 58.902 40.909 15.57 0.00 43.67 4.40
2469 18557 3.523606 TGCAATACCCATTGAATGTGC 57.476 42.857 9.84 9.84 43.67 4.57
2470 18558 3.866910 GCTTGCAATACCCATTGAATGTG 59.133 43.478 0.00 0.00 43.67 3.21
2471 18559 3.514706 TGCTTGCAATACCCATTGAATGT 59.485 39.130 0.00 0.00 43.67 2.71
2472 18560 4.126208 TGCTTGCAATACCCATTGAATG 57.874 40.909 0.00 0.00 43.67 2.67
2473 18561 4.162698 ACATGCTTGCAATACCCATTGAAT 59.837 37.500 0.00 0.00 43.67 2.57
2474 18562 3.514706 ACATGCTTGCAATACCCATTGAA 59.485 39.130 0.00 0.00 43.67 2.69
2475 18563 3.098377 ACATGCTTGCAATACCCATTGA 58.902 40.909 0.00 0.00 43.67 2.57
2476 18564 3.530265 ACATGCTTGCAATACCCATTG 57.470 42.857 0.00 0.00 43.79 2.82
2477 18565 5.674052 TTTACATGCTTGCAATACCCATT 57.326 34.783 0.00 0.00 0.00 3.16
2478 18566 5.874897 ATTTACATGCTTGCAATACCCAT 57.125 34.783 0.00 0.00 0.00 4.00
2479 18567 5.674052 AATTTACATGCTTGCAATACCCA 57.326 34.783 0.00 0.00 0.00 4.51
2480 18568 6.805713 AGTAATTTACATGCTTGCAATACCC 58.194 36.000 0.00 0.00 0.00 3.69
2481 18569 7.591426 GCTAGTAATTTACATGCTTGCAATACC 59.409 37.037 0.00 0.00 0.00 2.73
2482 18570 8.345565 AGCTAGTAATTTACATGCTTGCAATAC 58.654 33.333 15.73 0.00 36.57 1.89
2483 18571 8.450578 AGCTAGTAATTTACATGCTTGCAATA 57.549 30.769 15.73 0.00 36.57 1.90
2484 18572 7.067372 TGAGCTAGTAATTTACATGCTTGCAAT 59.933 33.333 19.79 0.00 38.76 3.56
2485 18573 6.374053 TGAGCTAGTAATTTACATGCTTGCAA 59.626 34.615 19.79 0.00 38.76 4.08
2486 18574 5.879777 TGAGCTAGTAATTTACATGCTTGCA 59.120 36.000 19.79 14.26 38.76 4.08
2487 18575 6.363577 TGAGCTAGTAATTTACATGCTTGC 57.636 37.500 19.79 12.65 38.76 4.01
2488 18576 7.907045 CAGTTGAGCTAGTAATTTACATGCTTG 59.093 37.037 19.79 13.57 38.76 4.01
2489 18577 7.607991 ACAGTTGAGCTAGTAATTTACATGCTT 59.392 33.333 19.79 8.05 38.76 3.91
2490 18578 7.065085 CACAGTTGAGCTAGTAATTTACATGCT 59.935 37.037 19.25 19.25 40.38 3.79
2491 18579 7.064609 TCACAGTTGAGCTAGTAATTTACATGC 59.935 37.037 9.15 11.23 0.00 4.06
2492 18580 8.479313 TCACAGTTGAGCTAGTAATTTACATG 57.521 34.615 9.15 0.00 0.00 3.21
2493 18581 8.709386 CTCACAGTTGAGCTAGTAATTTACAT 57.291 34.615 9.15 0.00 42.99 2.29
2526 18614 8.990163 ACCTATTCTCCTATCTTAGCTATAGC 57.010 38.462 17.33 17.33 42.49 2.97
2528 18616 9.924010 GGAACCTATTCTCCTATCTTAGCTATA 57.076 37.037 0.00 0.00 34.98 1.31
2529 18617 8.832458 GGAACCTATTCTCCTATCTTAGCTAT 57.168 38.462 0.00 0.00 34.98 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.