Multiple sequence alignment - TraesCS4A01G410800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G410800 chr4A 100.000 3657 0 0 1 3657 683619332 683615676 0.000000e+00 6754.0
1 TraesCS4A01G410800 chr4A 85.153 229 17 8 2695 2909 24511992 24512217 6.150000e-53 219.0
2 TraesCS4A01G410800 chr4B 90.203 1623 78 30 775 2366 601100475 601098903 0.000000e+00 2041.0
3 TraesCS4A01G410800 chr4B 82.229 619 59 18 1 576 601101335 601100725 1.530000e-133 486.0
4 TraesCS4A01G410800 chr4B 84.722 360 19 11 3006 3333 601098429 601098074 9.790000e-86 327.0
5 TraesCS4A01G410800 chr4B 86.383 235 14 9 2689 2909 553863656 553863426 1.310000e-59 241.0
6 TraesCS4A01G410800 chr4B 86.522 230 14 8 2694 2909 553863065 553863291 1.700000e-58 237.0
7 TraesCS4A01G410800 chr4B 86.087 230 15 2 2694 2909 12513565 12513339 7.900000e-57 231.0
8 TraesCS4A01G410800 chr4B 89.474 76 6 1 2624 2697 601098544 601098469 1.080000e-15 95.3
9 TraesCS4A01G410800 chr4B 88.462 78 4 1 2533 2610 601098667 601098595 5.030000e-14 89.8
10 TraesCS4A01G410800 chr4D 97.459 669 17 0 1688 2356 476875953 476875285 0.000000e+00 1142.0
11 TraesCS4A01G410800 chr4D 85.789 950 52 25 771 1689 476876884 476875987 0.000000e+00 929.0
12 TraesCS4A01G410800 chr4D 81.656 616 47 21 1 569 476877733 476877137 5.570000e-123 451.0
13 TraesCS4A01G410800 chr4D 85.223 291 20 8 3007 3281 476874856 476874573 1.000000e-70 278.0
14 TraesCS4A01G410800 chr4D 79.798 297 37 13 3365 3657 476874319 476874042 1.040000e-45 195.0
15 TraesCS4A01G410800 chr4D 87.006 177 11 9 2533 2697 476875071 476874895 4.820000e-44 189.0
16 TraesCS4A01G410800 chr3A 80.854 632 111 8 1730 2353 746918137 746917508 4.240000e-134 488.0
17 TraesCS4A01G410800 chr3A 84.937 239 19 3 2685 2909 730658569 730658804 3.670000e-55 226.0
18 TraesCS4A01G410800 chr3A 92.958 71 5 0 2911 2981 673863666 673863736 1.800000e-18 104.0
19 TraesCS4A01G410800 chr3B 80.655 641 113 9 1722 2353 826725307 826725945 1.530000e-133 486.0
20 TraesCS4A01G410800 chr3B 85.780 218 26 4 2694 2909 71802396 71802610 3.670000e-55 226.0
21 TraesCS4A01G410800 chr3D 80.063 632 116 8 1730 2353 612273139 612272510 9.250000e-126 460.0
22 TraesCS4A01G410800 chr3D 97.674 129 3 0 2228 2356 91053037 91053165 4.750000e-54 222.0
23 TraesCS4A01G410800 chr3D 85.153 229 17 9 2695 2909 385870782 385871007 6.150000e-53 219.0
24 TraesCS4A01G410800 chr3D 96.364 110 2 2 2123 2231 91053046 91052938 2.900000e-41 180.0
25 TraesCS4A01G410800 chr2A 86.522 230 14 7 2694 2909 611762212 611762438 1.700000e-58 237.0
26 TraesCS4A01G410800 chr2A 94.203 69 4 0 2911 2979 752740013 752740081 4.990000e-19 106.0
27 TraesCS4A01G410800 chr1A 85.652 230 16 6 2694 2909 313007695 313007469 3.670000e-55 226.0
28 TraesCS4A01G410800 chr1A 84.979 233 18 5 2691 2909 542760246 542760475 1.710000e-53 220.0
29 TraesCS4A01G410800 chr1A 85.217 230 17 2 2694 2909 548583717 548583491 1.710000e-53 220.0
30 TraesCS4A01G410800 chr1A 84.348 230 19 3 2694 2909 63746945 63747171 3.700000e-50 209.0
31 TraesCS4A01G410800 chr7B 84.167 240 20 6 2684 2909 619611427 619611192 2.210000e-52 217.0
32 TraesCS4A01G410800 chr5A 84.322 236 17 3 2691 2909 524918923 524919155 2.860000e-51 213.0
33 TraesCS4A01G410800 chr5B 84.348 230 19 5 2694 2909 605818579 605818805 3.700000e-50 209.0
34 TraesCS4A01G410800 chr5B 91.549 71 6 0 2911 2981 466740388 466740458 8.360000e-17 99.0
35 TraesCS4A01G410800 chr5D 83.761 234 17 12 2694 2909 419385007 419384777 6.190000e-48 202.0
36 TraesCS4A01G410800 chr2D 80.153 262 47 4 2034 2291 474898829 474898569 1.340000e-44 191.0
37 TraesCS4A01G410800 chr6B 94.203 69 4 0 2911 2979 565748339 565748407 4.990000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G410800 chr4A 683615676 683619332 3656 True 6754.000000 6754 100.000000 1 3657 1 chr4A.!!$R1 3656
1 TraesCS4A01G410800 chr4B 601098074 601101335 3261 True 607.820000 2041 87.018000 1 3333 5 chr4B.!!$R3 3332
2 TraesCS4A01G410800 chr4D 476874042 476877733 3691 True 530.666667 1142 86.155167 1 3657 6 chr4D.!!$R1 3656
3 TraesCS4A01G410800 chr3A 746917508 746918137 629 True 488.000000 488 80.854000 1730 2353 1 chr3A.!!$R1 623
4 TraesCS4A01G410800 chr3B 826725307 826725945 638 False 486.000000 486 80.655000 1722 2353 1 chr3B.!!$F2 631
5 TraesCS4A01G410800 chr3D 612272510 612273139 629 True 460.000000 460 80.063000 1730 2353 1 chr3D.!!$R2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.234884 CAACTCGCCGAAAAGGACAC 59.765 55.0 0.00 0.00 45.00 3.67 F
468 511 0.318360 ACAGTGTTCAATCGTCGCGA 60.318 50.0 3.71 3.71 41.13 5.87 F
1622 1787 0.321122 CCTATCGAGCCTGCCATTCC 60.321 60.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1710 0.034477 ACGTAATCCCAGGGGCAAAG 60.034 55.0 5.33 0.0 34.68 2.77 R
2430 2639 0.029567 GAAGGAGACGACGCGATCAT 59.970 55.0 15.93 0.0 0.00 2.45 R
2968 3334 0.111253 CAACAGCTGGGGAGGAACTT 59.889 55.0 19.93 0.0 41.55 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.497722 GGAGCAACTCGCCGAAAAG 59.502 57.895 0.00 0.00 44.04 2.27
26 27 1.503818 GCAACTCGCCGAAAAGGACA 61.504 55.000 0.00 0.00 45.00 4.02
27 28 0.234884 CAACTCGCCGAAAAGGACAC 59.765 55.000 0.00 0.00 45.00 3.67
59 62 1.363443 GAGCCAGATCGAGCCAGAG 59.637 63.158 0.00 0.00 0.00 3.35
95 98 3.595758 GCGCACAGCCACCAAAGT 61.596 61.111 0.30 0.00 40.81 2.66
96 99 2.639286 CGCACAGCCACCAAAGTC 59.361 61.111 0.00 0.00 0.00 3.01
97 100 1.893808 CGCACAGCCACCAAAGTCT 60.894 57.895 0.00 0.00 0.00 3.24
98 101 1.656441 GCACAGCCACCAAAGTCTG 59.344 57.895 0.00 0.00 0.00 3.51
99 102 1.656441 CACAGCCACCAAAGTCTGC 59.344 57.895 0.00 0.00 0.00 4.26
175 178 1.225376 GACACAAATCACGGTCGCCA 61.225 55.000 0.00 0.00 0.00 5.69
201 204 1.525995 CATAGACCGCCGGCCAAAT 60.526 57.895 23.46 7.54 0.00 2.32
278 283 1.821759 CGGCCTCCAAACACACACA 60.822 57.895 0.00 0.00 0.00 3.72
279 284 1.380403 CGGCCTCCAAACACACACAA 61.380 55.000 0.00 0.00 0.00 3.33
280 285 0.820871 GGCCTCCAAACACACACAAA 59.179 50.000 0.00 0.00 0.00 2.83
285 290 2.230025 CTCCAAACACACACAAACCACA 59.770 45.455 0.00 0.00 0.00 4.17
288 293 2.992543 CAAACACACACAAACCACAAGG 59.007 45.455 0.00 0.00 42.21 3.61
375 382 2.063979 TTGCCGTCCCGATCCATCT 61.064 57.895 0.00 0.00 0.00 2.90
385 392 1.002888 CCGATCCATCTTCCATCCCAG 59.997 57.143 0.00 0.00 0.00 4.45
426 461 1.554042 CCTCGTGTTACGTGTGCACC 61.554 60.000 15.69 4.74 43.14 5.01
445 480 4.021981 GCACCAAAGGAGCTCACTTTAATT 60.022 41.667 22.05 11.59 36.46 1.40
447 482 6.612306 CACCAAAGGAGCTCACTTTAATTAC 58.388 40.000 22.05 1.49 36.46 1.89
455 490 5.621193 AGCTCACTTTAATTACCACAGTGT 58.379 37.500 0.00 0.00 36.91 3.55
456 491 6.062095 AGCTCACTTTAATTACCACAGTGTT 58.938 36.000 0.00 0.00 36.91 3.32
457 492 6.204882 AGCTCACTTTAATTACCACAGTGTTC 59.795 38.462 0.00 6.43 36.91 3.18
458 493 6.017440 GCTCACTTTAATTACCACAGTGTTCA 60.017 38.462 0.00 0.00 36.91 3.18
459 494 7.468084 GCTCACTTTAATTACCACAGTGTTCAA 60.468 37.037 0.00 0.00 36.91 2.69
462 505 7.533900 CACTTTAATTACCACAGTGTTCAATCG 59.466 37.037 0.00 0.00 31.91 3.34
468 511 0.318360 ACAGTGTTCAATCGTCGCGA 60.318 50.000 3.71 3.71 41.13 5.87
552 600 3.724374 TCTCCGTTTTTCACCTACACAG 58.276 45.455 0.00 0.00 0.00 3.66
556 604 4.341806 TCCGTTTTTCACCTACACAGAGTA 59.658 41.667 0.00 0.00 0.00 2.59
573 621 3.851098 GAGTATCTCGTTTTGCTCACCT 58.149 45.455 0.00 0.00 0.00 4.00
574 622 4.995124 GAGTATCTCGTTTTGCTCACCTA 58.005 43.478 0.00 0.00 0.00 3.08
592 651 3.320826 ACCTAGACAAACATTTTGGCACC 59.679 43.478 7.23 0.00 0.00 5.01
595 654 2.765699 AGACAAACATTTTGGCACCTGT 59.234 40.909 7.23 0.00 0.00 4.00
598 657 3.449018 ACAAACATTTTGGCACCTGTACA 59.551 39.130 0.00 0.00 0.00 2.90
601 660 0.881118 ATTTTGGCACCTGTACAGCG 59.119 50.000 17.86 12.86 0.00 5.18
602 661 1.791103 TTTTGGCACCTGTACAGCGC 61.791 55.000 17.86 19.85 0.00 5.92
603 662 2.949705 TTTGGCACCTGTACAGCGCA 62.950 55.000 26.98 15.75 0.00 6.09
610 704 1.337260 ACCTGTACAGCGCAGAAGAAG 60.337 52.381 17.86 2.28 36.12 2.85
611 705 1.337260 CCTGTACAGCGCAGAAGAAGT 60.337 52.381 17.86 0.00 36.12 3.01
613 707 1.339929 TGTACAGCGCAGAAGAAGTGA 59.660 47.619 11.47 0.00 0.00 3.41
625 719 4.570772 CAGAAGAAGTGACCGAGTTTTTCA 59.429 41.667 0.00 0.00 32.72 2.69
626 720 5.237344 CAGAAGAAGTGACCGAGTTTTTCAT 59.763 40.000 0.00 0.00 32.72 2.57
627 721 5.467063 AGAAGAAGTGACCGAGTTTTTCATC 59.533 40.000 0.00 0.00 32.72 2.92
628 722 4.962155 AGAAGTGACCGAGTTTTTCATCT 58.038 39.130 0.00 0.00 0.00 2.90
629 723 4.991687 AGAAGTGACCGAGTTTTTCATCTC 59.008 41.667 0.00 0.00 0.00 2.75
634 728 6.073003 AGTGACCGAGTTTTTCATCTCATTTC 60.073 38.462 0.00 0.00 0.00 2.17
637 733 4.458989 CCGAGTTTTTCATCTCATTTCCCA 59.541 41.667 0.00 0.00 0.00 4.37
641 737 7.362401 CGAGTTTTTCATCTCATTTCCCATTCT 60.362 37.037 0.00 0.00 0.00 2.40
644 740 9.927668 GTTTTTCATCTCATTTCCCATTCTTTA 57.072 29.630 0.00 0.00 0.00 1.85
648 744 9.705103 TTCATCTCATTTCCCATTCTTTATTCT 57.295 29.630 0.00 0.00 0.00 2.40
657 753 8.691661 TTCCCATTCTTTATTCTATACCAAGC 57.308 34.615 0.00 0.00 0.00 4.01
660 756 7.391833 CCCATTCTTTATTCTATACCAAGCCTC 59.608 40.741 0.00 0.00 0.00 4.70
661 757 7.939039 CCATTCTTTATTCTATACCAAGCCTCA 59.061 37.037 0.00 0.00 0.00 3.86
671 793 7.474445 TCTATACCAAGCCTCATCTTATCTCT 58.526 38.462 0.00 0.00 0.00 3.10
672 794 4.953940 ACCAAGCCTCATCTTATCTCTC 57.046 45.455 0.00 0.00 0.00 3.20
682 804 7.310921 GCCTCATCTTATCTCTCCCATGAATTA 60.311 40.741 0.00 0.00 0.00 1.40
684 806 7.606349 TCATCTTATCTCTCCCATGAATTACG 58.394 38.462 0.00 0.00 0.00 3.18
687 809 6.778069 TCTTATCTCTCCCATGAATTACGTCT 59.222 38.462 0.00 0.00 0.00 4.18
688 810 5.878406 ATCTCTCCCATGAATTACGTCTT 57.122 39.130 0.00 0.00 0.00 3.01
689 811 5.263968 TCTCTCCCATGAATTACGTCTTC 57.736 43.478 0.00 0.00 0.00 2.87
693 823 5.011090 TCCCATGAATTACGTCTTCTCAG 57.989 43.478 10.92 3.08 0.00 3.35
696 826 5.521735 CCCATGAATTACGTCTTCTCAGAAG 59.478 44.000 8.27 8.27 34.85 2.85
741 873 5.133221 CCTCCCATCAATTTCCGAAACTAT 58.867 41.667 0.00 0.00 0.00 2.12
745 880 5.590259 CCCATCAATTTCCGAAACTATCAGT 59.410 40.000 0.00 0.00 0.00 3.41
749 884 8.830580 CATCAATTTCCGAAACTATCAGTACAT 58.169 33.333 0.00 0.00 0.00 2.29
750 885 8.420374 TCAATTTCCGAAACTATCAGTACATC 57.580 34.615 0.00 0.00 0.00 3.06
751 886 7.494625 TCAATTTCCGAAACTATCAGTACATCC 59.505 37.037 0.00 0.00 0.00 3.51
752 887 5.925506 TTCCGAAACTATCAGTACATCCA 57.074 39.130 0.00 0.00 0.00 3.41
753 888 5.258456 TCCGAAACTATCAGTACATCCAC 57.742 43.478 0.00 0.00 0.00 4.02
754 889 4.098960 TCCGAAACTATCAGTACATCCACC 59.901 45.833 0.00 0.00 0.00 4.61
755 890 4.369182 CGAAACTATCAGTACATCCACCC 58.631 47.826 0.00 0.00 0.00 4.61
756 891 4.142026 CGAAACTATCAGTACATCCACCCA 60.142 45.833 0.00 0.00 0.00 4.51
757 892 5.453339 CGAAACTATCAGTACATCCACCCAT 60.453 44.000 0.00 0.00 0.00 4.00
758 893 4.963318 ACTATCAGTACATCCACCCATG 57.037 45.455 0.00 0.00 0.00 3.66
759 894 4.556697 ACTATCAGTACATCCACCCATGA 58.443 43.478 0.00 0.00 0.00 3.07
760 895 4.968719 ACTATCAGTACATCCACCCATGAA 59.031 41.667 0.00 0.00 0.00 2.57
761 896 5.608437 ACTATCAGTACATCCACCCATGAAT 59.392 40.000 0.00 0.00 0.00 2.57
762 897 4.155063 TCAGTACATCCACCCATGAATG 57.845 45.455 0.00 0.00 0.00 2.67
763 898 3.779738 TCAGTACATCCACCCATGAATGA 59.220 43.478 0.00 0.00 0.00 2.57
764 899 4.413189 TCAGTACATCCACCCATGAATGAT 59.587 41.667 0.00 0.00 0.00 2.45
765 900 4.517832 CAGTACATCCACCCATGAATGATG 59.482 45.833 0.00 3.76 38.94 3.07
766 901 3.957508 ACATCCACCCATGAATGATGA 57.042 42.857 16.28 1.44 37.01 2.92
767 902 3.559069 ACATCCACCCATGAATGATGAC 58.441 45.455 16.28 0.00 37.01 3.06
768 903 3.053470 ACATCCACCCATGAATGATGACA 60.053 43.478 16.28 0.00 37.01 3.58
769 904 3.003394 TCCACCCATGAATGATGACAC 57.997 47.619 0.00 0.00 33.31 3.67
770 905 1.672363 CCACCCATGAATGATGACACG 59.328 52.381 0.00 0.00 33.31 4.49
771 906 2.358957 CACCCATGAATGATGACACGT 58.641 47.619 0.00 0.00 33.31 4.49
772 907 3.530535 CACCCATGAATGATGACACGTA 58.469 45.455 0.00 0.00 33.31 3.57
773 908 3.309682 CACCCATGAATGATGACACGTAC 59.690 47.826 0.00 0.00 33.31 3.67
774 909 2.539688 CCCATGAATGATGACACGTACG 59.460 50.000 15.01 15.01 33.31 3.67
775 910 2.033747 CCATGAATGATGACACGTACGC 60.034 50.000 16.72 0.00 33.31 4.42
776 911 2.355717 TGAATGATGACACGTACGCA 57.644 45.000 16.72 5.79 0.00 5.24
777 912 1.989864 TGAATGATGACACGTACGCAC 59.010 47.619 16.72 7.57 0.00 5.34
778 913 6.776083 CATGAATGATGACACGTACGCACG 62.776 50.000 16.72 6.64 43.43 5.34
800 935 2.097954 CACATTCGGCATGCAGTTACAT 59.902 45.455 21.36 4.56 36.14 2.29
815 950 2.749621 GTTACATCCAGCTGTTTCCCAG 59.250 50.000 13.81 0.00 44.53 4.45
853 988 1.681666 CCTCCAGAAGCTTCAGGCA 59.318 57.895 28.26 17.68 44.79 4.75
854 989 0.392729 CCTCCAGAAGCTTCAGGCAG 60.393 60.000 28.26 23.80 44.79 4.85
855 990 0.392729 CTCCAGAAGCTTCAGGCAGG 60.393 60.000 28.26 19.80 44.79 4.85
856 991 2.045131 CCAGAAGCTTCAGGCAGGC 61.045 63.158 27.57 0.00 44.79 4.85
922 1057 3.095278 CACACCGTCCGTTCGTCG 61.095 66.667 0.00 0.00 39.52 5.12
1005 1150 1.376037 CGCTCCTTCCTCACCAACC 60.376 63.158 0.00 0.00 0.00 3.77
1007 1152 1.296715 CTCCTTCCTCACCAACCCG 59.703 63.158 0.00 0.00 0.00 5.28
1012 1157 4.410400 CCTCACCAACCCGCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
1025 1170 1.178534 CGCCTCCCTCATCTCTCTCC 61.179 65.000 0.00 0.00 0.00 3.71
1035 1180 3.522731 CTCTCTCCACTCCGGCCG 61.523 72.222 21.04 21.04 33.14 6.13
1063 1208 4.620567 GCCAGTCTCTTCTTCTTCTTCTCC 60.621 50.000 0.00 0.00 0.00 3.71
1075 1220 4.482684 TTCTCCAGCGAGCGAGCG 62.483 66.667 0.00 0.00 43.00 5.03
1240 1385 0.807496 GCATGGCCTTCAGTGAGTTC 59.193 55.000 3.32 0.00 0.00 3.01
1245 1390 1.349357 GGCCTTCAGTGAGTTCCTTCT 59.651 52.381 0.00 0.00 0.00 2.85
1246 1391 2.224646 GGCCTTCAGTGAGTTCCTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
1247 1392 3.070748 GCCTTCAGTGAGTTCCTTCTTC 58.929 50.000 0.00 0.00 0.00 2.87
1252 1397 3.325135 TCAGTGAGTTCCTTCTTCCTTCC 59.675 47.826 0.00 0.00 0.00 3.46
1265 1410 3.449018 TCTTCCTTCCTTCTTCTCATCGG 59.551 47.826 0.00 0.00 0.00 4.18
1285 1430 5.505780 TCGGTTAATTCTTTCCATCACCAT 58.494 37.500 0.00 0.00 0.00 3.55
1286 1431 6.654959 TCGGTTAATTCTTTCCATCACCATA 58.345 36.000 0.00 0.00 0.00 2.74
1287 1432 7.113437 TCGGTTAATTCTTTCCATCACCATAA 58.887 34.615 0.00 0.00 0.00 1.90
1288 1433 7.777910 TCGGTTAATTCTTTCCATCACCATAAT 59.222 33.333 0.00 0.00 0.00 1.28
1326 1486 9.102757 TGAGAAATCAAGCTAGTTAATTAGCAG 57.897 33.333 26.14 19.22 46.69 4.24
1362 1522 1.964223 TGGATAGCTAGCTAGTGCACC 59.036 52.381 27.42 22.29 42.74 5.01
1378 1538 0.389948 CACCTACGACAAGACAGGGC 60.390 60.000 0.00 0.00 32.39 5.19
1388 1550 0.755327 AAGACAGGGCAAAAACCGCT 60.755 50.000 0.00 0.00 0.00 5.52
1399 1561 1.650825 AAAACCGCTTGCTTTTGGTG 58.349 45.000 0.00 0.00 34.26 4.17
1421 1583 6.516739 TGTTGGACACAAGTTAAAATGACA 57.483 33.333 0.00 0.00 37.25 3.58
1422 1584 6.925211 TGTTGGACACAAGTTAAAATGACAA 58.075 32.000 0.00 0.00 37.25 3.18
1423 1585 7.032580 TGTTGGACACAAGTTAAAATGACAAG 58.967 34.615 0.00 0.00 37.25 3.16
1424 1586 7.094162 TGTTGGACACAAGTTAAAATGACAAGA 60.094 33.333 0.00 0.00 37.25 3.02
1432 1594 9.586435 ACAAGTTAAAATGACAAGAAAGAAAGG 57.414 29.630 0.00 0.00 0.00 3.11
1440 1602 6.119144 TGACAAGAAAGAAAGGAAGAAACG 57.881 37.500 0.00 0.00 0.00 3.60
1488 1650 4.889409 AGCCTAGAGAAATCTGTCTCAGAG 59.111 45.833 5.10 0.00 44.08 3.35
1535 1697 5.779771 AGGCTTTTTAGGTTGAATGATTGGA 59.220 36.000 0.00 0.00 0.00 3.53
1546 1708 4.851843 TGAATGATTGGAGCAGAATGACT 58.148 39.130 0.00 0.00 39.69 3.41
1548 1710 5.819379 TGAATGATTGGAGCAGAATGACTAC 59.181 40.000 0.00 0.00 39.69 2.73
1556 1718 1.745653 GCAGAATGACTACTTTGCCCC 59.254 52.381 0.00 0.00 39.69 5.80
1601 1766 2.675348 GTGGTGAATCAGTAGCTTCTGC 59.325 50.000 15.03 2.86 35.63 4.26
1619 1784 2.360138 CTCCTATCGAGCCTGCCAT 58.640 57.895 0.00 0.00 0.00 4.40
1620 1785 0.683973 CTCCTATCGAGCCTGCCATT 59.316 55.000 0.00 0.00 0.00 3.16
1621 1786 0.681733 TCCTATCGAGCCTGCCATTC 59.318 55.000 0.00 0.00 0.00 2.67
1622 1787 0.321122 CCTATCGAGCCTGCCATTCC 60.321 60.000 0.00 0.00 0.00 3.01
1705 1908 0.388520 CAGTGCGAATCCGACTGACA 60.389 55.000 0.00 0.00 41.73 3.58
1713 1916 3.399330 GAATCCGACTGACAGTTTTCCA 58.601 45.455 10.01 0.00 0.00 3.53
1726 1929 5.358922 ACAGTTTTCCATGTTTGATTGTGG 58.641 37.500 0.00 0.00 0.00 4.17
1727 1930 4.211794 CAGTTTTCCATGTTTGATTGTGGC 59.788 41.667 0.00 0.00 0.00 5.01
2007 2210 4.021925 GGCACCTTCGGGCTGAGT 62.022 66.667 0.00 0.00 39.10 3.41
2388 2597 4.415332 CCAGCCTGCTTGCTTGCG 62.415 66.667 0.00 0.00 40.32 4.85
2392 2601 3.968568 CCTGCTTGCTTGCGTGCA 61.969 61.111 10.66 10.66 41.65 4.57
2428 2637 2.202570 CCGTCCGTCCGTGTGATC 60.203 66.667 0.00 0.00 0.00 2.92
2429 2638 2.697761 CCGTCCGTCCGTGTGATCT 61.698 63.158 0.00 0.00 0.00 2.75
2430 2639 1.371337 CCGTCCGTCCGTGTGATCTA 61.371 60.000 0.00 0.00 0.00 1.98
2431 2640 0.661552 CGTCCGTCCGTGTGATCTAT 59.338 55.000 0.00 0.00 0.00 1.98
2433 2642 1.674441 GTCCGTCCGTGTGATCTATGA 59.326 52.381 0.00 0.00 0.00 2.15
2434 2643 2.293677 GTCCGTCCGTGTGATCTATGAT 59.706 50.000 0.00 0.00 0.00 2.45
2435 2644 2.552743 TCCGTCCGTGTGATCTATGATC 59.447 50.000 0.00 0.98 0.00 2.92
2436 2645 2.575363 CGTCCGTGTGATCTATGATCG 58.425 52.381 0.00 0.00 0.00 3.69
2437 2646 2.320367 GTCCGTGTGATCTATGATCGC 58.680 52.381 12.53 12.53 0.00 4.58
2438 2647 1.069227 TCCGTGTGATCTATGATCGCG 60.069 52.381 0.00 0.00 0.00 5.87
2459 2672 0.250234 CGTCTCCTTCCTTGCCATCA 59.750 55.000 0.00 0.00 0.00 3.07
2473 2686 2.027653 TGCCATCACCATGAGTCGTTTA 60.028 45.455 0.00 0.00 30.57 2.01
2506 2809 1.270625 GGGTCGATCAGTTTGTGGTGA 60.271 52.381 0.00 0.00 0.00 4.02
2509 2816 3.131396 GTCGATCAGTTTGTGGTGAGTT 58.869 45.455 0.00 0.00 0.00 3.01
2525 2832 3.059800 GTGAGTTCGTGGAGCTGTAAAAC 60.060 47.826 0.00 0.00 0.00 2.43
2536 2863 1.855513 CTGTAAAACCGTGGACGACA 58.144 50.000 0.00 0.00 43.02 4.35
2574 2901 1.314730 AAAACTGTGAATTCGCCCGT 58.685 45.000 16.14 10.32 0.00 5.28
2597 2924 2.159572 CCGCCCGAGTAATTTCAAGTTG 60.160 50.000 0.00 0.00 0.00 3.16
2607 2934 7.794349 CGAGTAATTTCAAGTTGAGTTGAGTTC 59.206 37.037 5.56 0.49 37.72 3.01
2610 2937 5.464965 TTTCAAGTTGAGTTGAGTTCGAC 57.535 39.130 5.56 0.00 37.72 4.20
2613 2940 1.407979 AGTTGAGTTGAGTTCGACCGT 59.592 47.619 0.00 0.00 30.65 4.83
2615 2942 0.596600 TGAGTTGAGTTCGACCGTGC 60.597 55.000 0.00 0.00 0.00 5.34
2617 2944 1.300697 GTTGAGTTCGACCGTGCCT 60.301 57.895 0.00 0.00 0.00 4.75
2618 2945 1.006571 TTGAGTTCGACCGTGCCTC 60.007 57.895 0.00 0.00 0.00 4.70
2619 2946 1.461091 TTGAGTTCGACCGTGCCTCT 61.461 55.000 0.00 0.00 0.00 3.69
2620 2947 1.444553 GAGTTCGACCGTGCCTCTG 60.445 63.158 0.00 0.00 0.00 3.35
2621 2948 1.863662 GAGTTCGACCGTGCCTCTGA 61.864 60.000 0.00 0.00 0.00 3.27
2622 2949 1.006571 GTTCGACCGTGCCTCTGAA 60.007 57.895 0.00 0.00 0.00 3.02
2661 3027 0.103208 ATCCGTCCGTCTGAGATTGC 59.897 55.000 0.00 0.00 0.00 3.56
2690 3056 5.997843 AGGTCCACTACTGTTTAGTTTGTT 58.002 37.500 0.00 0.00 38.36 2.83
2695 3061 6.540914 TCCACTACTGTTTAGTTTGTTTGAGG 59.459 38.462 0.00 0.00 38.36 3.86
2696 3062 6.199393 CACTACTGTTTAGTTTGTTTGAGGC 58.801 40.000 0.00 0.00 38.36 4.70
2697 3063 5.883673 ACTACTGTTTAGTTTGTTTGAGGCA 59.116 36.000 0.00 0.00 38.36 4.75
2698 3064 5.248870 ACTGTTTAGTTTGTTTGAGGCAG 57.751 39.130 0.00 0.00 31.66 4.85
2699 3065 4.097892 ACTGTTTAGTTTGTTTGAGGCAGG 59.902 41.667 0.00 0.00 31.66 4.85
2700 3066 4.020543 TGTTTAGTTTGTTTGAGGCAGGT 58.979 39.130 0.00 0.00 0.00 4.00
2701 3067 4.097286 TGTTTAGTTTGTTTGAGGCAGGTC 59.903 41.667 0.00 0.00 0.00 3.85
2702 3068 2.435372 AGTTTGTTTGAGGCAGGTCA 57.565 45.000 0.00 0.00 0.00 4.02
2703 3069 2.949447 AGTTTGTTTGAGGCAGGTCAT 58.051 42.857 0.00 0.00 0.00 3.06
2704 3070 4.098914 AGTTTGTTTGAGGCAGGTCATA 57.901 40.909 0.00 0.00 0.00 2.15
2705 3071 4.469657 AGTTTGTTTGAGGCAGGTCATAA 58.530 39.130 0.00 0.00 0.00 1.90
2706 3072 5.079643 AGTTTGTTTGAGGCAGGTCATAAT 58.920 37.500 0.00 0.00 0.00 1.28
2707 3073 5.047802 AGTTTGTTTGAGGCAGGTCATAATG 60.048 40.000 0.00 0.00 0.00 1.90
2708 3074 3.355378 TGTTTGAGGCAGGTCATAATGG 58.645 45.455 0.00 0.00 0.00 3.16
2709 3075 2.689983 GTTTGAGGCAGGTCATAATGGG 59.310 50.000 0.00 0.00 0.00 4.00
2710 3076 0.183492 TGAGGCAGGTCATAATGGGC 59.817 55.000 0.00 0.00 0.00 5.36
2711 3077 0.183492 GAGGCAGGTCATAATGGGCA 59.817 55.000 0.00 0.00 0.00 5.36
2712 3078 0.630673 AGGCAGGTCATAATGGGCAA 59.369 50.000 0.00 0.00 0.00 4.52
2713 3079 1.035139 GGCAGGTCATAATGGGCAAG 58.965 55.000 0.00 0.00 0.00 4.01
2714 3080 1.410083 GGCAGGTCATAATGGGCAAGA 60.410 52.381 0.00 0.00 0.00 3.02
2715 3081 2.378038 GCAGGTCATAATGGGCAAGAA 58.622 47.619 0.00 0.00 0.00 2.52
2716 3082 2.099756 GCAGGTCATAATGGGCAAGAAC 59.900 50.000 0.00 0.00 0.00 3.01
2717 3083 3.355378 CAGGTCATAATGGGCAAGAACA 58.645 45.455 0.00 0.00 0.00 3.18
2718 3084 3.956199 CAGGTCATAATGGGCAAGAACAT 59.044 43.478 0.00 0.00 0.00 2.71
2719 3085 5.132502 CAGGTCATAATGGGCAAGAACATA 58.867 41.667 0.00 0.00 0.00 2.29
2720 3086 5.240183 CAGGTCATAATGGGCAAGAACATAG 59.760 44.000 0.00 0.00 0.00 2.23
2721 3087 5.103940 AGGTCATAATGGGCAAGAACATAGT 60.104 40.000 0.00 0.00 0.00 2.12
2722 3088 5.239525 GGTCATAATGGGCAAGAACATAGTC 59.760 44.000 0.00 0.00 0.00 2.59
2723 3089 6.058183 GTCATAATGGGCAAGAACATAGTCT 58.942 40.000 0.00 0.00 0.00 3.24
2724 3090 7.217200 GTCATAATGGGCAAGAACATAGTCTA 58.783 38.462 0.00 0.00 0.00 2.59
2725 3091 7.386299 GTCATAATGGGCAAGAACATAGTCTAG 59.614 40.741 0.00 0.00 0.00 2.43
2726 3092 5.700402 AATGGGCAAGAACATAGTCTAGT 57.300 39.130 0.00 0.00 0.00 2.57
2727 3093 6.808321 AATGGGCAAGAACATAGTCTAGTA 57.192 37.500 0.00 0.00 0.00 1.82
2728 3094 6.808321 ATGGGCAAGAACATAGTCTAGTAA 57.192 37.500 0.00 0.00 0.00 2.24
2729 3095 5.974108 TGGGCAAGAACATAGTCTAGTAAC 58.026 41.667 0.00 0.00 0.00 2.50
2730 3096 5.720041 TGGGCAAGAACATAGTCTAGTAACT 59.280 40.000 0.00 0.00 0.00 2.24
2731 3097 6.212791 TGGGCAAGAACATAGTCTAGTAACTT 59.787 38.462 0.00 0.00 0.00 2.66
2732 3098 7.398047 TGGGCAAGAACATAGTCTAGTAACTTA 59.602 37.037 0.00 0.00 0.00 2.24
2733 3099 7.705752 GGGCAAGAACATAGTCTAGTAACTTAC 59.294 40.741 0.00 0.00 0.00 2.34
2734 3100 8.248945 GGCAAGAACATAGTCTAGTAACTTACA 58.751 37.037 1.79 0.00 0.00 2.41
2735 3101 9.074443 GCAAGAACATAGTCTAGTAACTTACAC 57.926 37.037 1.79 0.00 0.00 2.90
2738 3104 8.738106 AGAACATAGTCTAGTAACTTACACACC 58.262 37.037 1.79 0.00 0.00 4.16
2739 3105 8.413309 AACATAGTCTAGTAACTTACACACCA 57.587 34.615 1.79 0.00 0.00 4.17
2740 3106 7.824672 ACATAGTCTAGTAACTTACACACCAC 58.175 38.462 1.79 0.00 0.00 4.16
2741 3107 7.668886 ACATAGTCTAGTAACTTACACACCACT 59.331 37.037 1.79 0.00 0.00 4.00
2742 3108 6.973460 AGTCTAGTAACTTACACACCACTT 57.027 37.500 1.79 0.00 0.00 3.16
2743 3109 7.357429 AGTCTAGTAACTTACACACCACTTT 57.643 36.000 1.79 0.00 0.00 2.66
2744 3110 7.789026 AGTCTAGTAACTTACACACCACTTTT 58.211 34.615 1.79 0.00 0.00 2.27
2745 3111 7.924947 AGTCTAGTAACTTACACACCACTTTTC 59.075 37.037 1.79 0.00 0.00 2.29
2746 3112 7.924947 GTCTAGTAACTTACACACCACTTTTCT 59.075 37.037 1.79 0.00 0.00 2.52
2747 3113 9.135189 TCTAGTAACTTACACACCACTTTTCTA 57.865 33.333 1.79 0.00 0.00 2.10
2748 3114 9.408069 CTAGTAACTTACACACCACTTTTCTAG 57.592 37.037 1.79 0.00 0.00 2.43
2749 3115 8.015185 AGTAACTTACACACCACTTTTCTAGA 57.985 34.615 1.79 0.00 0.00 2.43
2750 3116 7.924947 AGTAACTTACACACCACTTTTCTAGAC 59.075 37.037 0.00 0.00 0.00 2.59
2751 3117 6.481434 ACTTACACACCACTTTTCTAGACT 57.519 37.500 0.00 0.00 0.00 3.24
2752 3118 7.592885 ACTTACACACCACTTTTCTAGACTA 57.407 36.000 0.00 0.00 0.00 2.59
2753 3119 8.191534 ACTTACACACCACTTTTCTAGACTAT 57.808 34.615 0.00 0.00 0.00 2.12
2754 3120 8.088981 ACTTACACACCACTTTTCTAGACTATG 58.911 37.037 0.00 0.00 0.00 2.23
2755 3121 6.420913 ACACACCACTTTTCTAGACTATGT 57.579 37.500 0.00 0.00 0.00 2.29
2756 3122 6.827727 ACACACCACTTTTCTAGACTATGTT 58.172 36.000 0.00 0.00 0.00 2.71
2757 3123 7.959175 ACACACCACTTTTCTAGACTATGTTA 58.041 34.615 0.00 0.00 0.00 2.41
2758 3124 7.871463 ACACACCACTTTTCTAGACTATGTTAC 59.129 37.037 0.00 0.00 0.00 2.50
2759 3125 8.088981 CACACCACTTTTCTAGACTATGTTACT 58.911 37.037 0.00 0.00 0.00 2.24
2760 3126 9.305555 ACACCACTTTTCTAGACTATGTTACTA 57.694 33.333 0.00 0.00 0.00 1.82
2768 3134 9.916360 TTTCTAGACTATGTTACTATCTCCACA 57.084 33.333 0.00 0.00 0.00 4.17
2769 3135 9.562408 TTCTAGACTATGTTACTATCTCCACAG 57.438 37.037 0.00 0.00 0.00 3.66
2770 3136 8.715842 TCTAGACTATGTTACTATCTCCACAGT 58.284 37.037 0.00 0.00 0.00 3.55
2771 3137 9.999660 CTAGACTATGTTACTATCTCCACAGTA 57.000 37.037 0.00 0.00 0.00 2.74
2772 3138 8.911918 AGACTATGTTACTATCTCCACAGTAG 57.088 38.462 0.00 0.00 0.00 2.57
2773 3139 8.715842 AGACTATGTTACTATCTCCACAGTAGA 58.284 37.037 0.00 0.00 0.00 2.59
2774 3140 9.509956 GACTATGTTACTATCTCCACAGTAGAT 57.490 37.037 0.00 0.00 37.46 1.98
2783 3149 6.662865 ATCTCCACAGTAGATAGGAACATG 57.337 41.667 0.00 0.00 31.88 3.21
2784 3150 4.342378 TCTCCACAGTAGATAGGAACATGC 59.658 45.833 0.00 0.00 0.00 4.06
2785 3151 4.030216 TCCACAGTAGATAGGAACATGCA 58.970 43.478 0.00 0.00 0.00 3.96
2786 3152 4.469586 TCCACAGTAGATAGGAACATGCAA 59.530 41.667 0.00 0.00 0.00 4.08
2787 3153 4.572389 CCACAGTAGATAGGAACATGCAAC 59.428 45.833 0.00 0.00 0.00 4.17
2788 3154 5.178061 CACAGTAGATAGGAACATGCAACA 58.822 41.667 0.00 0.00 0.00 3.33
2789 3155 5.643348 CACAGTAGATAGGAACATGCAACAA 59.357 40.000 0.00 0.00 0.00 2.83
2790 3156 6.317140 CACAGTAGATAGGAACATGCAACAAT 59.683 38.462 0.00 0.00 0.00 2.71
2791 3157 6.317140 ACAGTAGATAGGAACATGCAACAATG 59.683 38.462 0.00 0.00 0.00 2.82
2792 3158 6.317140 CAGTAGATAGGAACATGCAACAATGT 59.683 38.462 0.00 0.00 42.62 2.71
2793 3159 7.495606 CAGTAGATAGGAACATGCAACAATGTA 59.504 37.037 0.00 0.00 39.89 2.29
2794 3160 8.213679 AGTAGATAGGAACATGCAACAATGTAT 58.786 33.333 0.00 0.00 39.89 2.29
2795 3161 7.886629 AGATAGGAACATGCAACAATGTATT 57.113 32.000 0.00 0.00 39.89 1.89
2796 3162 8.297470 AGATAGGAACATGCAACAATGTATTT 57.703 30.769 0.00 0.00 39.89 1.40
2797 3163 9.407380 AGATAGGAACATGCAACAATGTATTTA 57.593 29.630 0.00 0.00 39.89 1.40
2802 3168 9.248291 GGAACATGCAACAATGTATTTATTAGG 57.752 33.333 0.00 0.00 39.89 2.69
2803 3169 9.801873 GAACATGCAACAATGTATTTATTAGGT 57.198 29.630 0.00 0.00 39.89 3.08
2831 3197 7.865706 AGACTCATTGTTTCTTAAAGTGTGT 57.134 32.000 0.00 0.00 0.00 3.72
2832 3198 7.697691 AGACTCATTGTTTCTTAAAGTGTGTG 58.302 34.615 0.00 0.00 0.00 3.82
2833 3199 7.552687 AGACTCATTGTTTCTTAAAGTGTGTGA 59.447 33.333 0.00 0.00 0.00 3.58
2834 3200 8.225603 ACTCATTGTTTCTTAAAGTGTGTGAT 57.774 30.769 0.00 0.00 0.00 3.06
2835 3201 8.131100 ACTCATTGTTTCTTAAAGTGTGTGATG 58.869 33.333 0.00 0.00 0.00 3.07
2836 3202 7.995289 TCATTGTTTCTTAAAGTGTGTGATGT 58.005 30.769 0.00 0.00 0.00 3.06
2837 3203 8.465999 TCATTGTTTCTTAAAGTGTGTGATGTT 58.534 29.630 0.00 0.00 0.00 2.71
2838 3204 8.745837 CATTGTTTCTTAAAGTGTGTGATGTTC 58.254 33.333 0.00 0.00 0.00 3.18
2839 3205 7.624360 TGTTTCTTAAAGTGTGTGATGTTCT 57.376 32.000 0.00 0.00 0.00 3.01
2840 3206 7.471721 TGTTTCTTAAAGTGTGTGATGTTCTG 58.528 34.615 0.00 0.00 0.00 3.02
2841 3207 7.335673 TGTTTCTTAAAGTGTGTGATGTTCTGA 59.664 33.333 0.00 0.00 0.00 3.27
2842 3208 8.345565 GTTTCTTAAAGTGTGTGATGTTCTGAT 58.654 33.333 0.00 0.00 0.00 2.90
2843 3209 9.554395 TTTCTTAAAGTGTGTGATGTTCTGATA 57.446 29.630 0.00 0.00 0.00 2.15
2844 3210 9.554395 TTCTTAAAGTGTGTGATGTTCTGATAA 57.446 29.630 0.00 0.00 0.00 1.75
2845 3211 8.988934 TCTTAAAGTGTGTGATGTTCTGATAAC 58.011 33.333 0.00 0.00 0.00 1.89
2846 3212 8.902540 TTAAAGTGTGTGATGTTCTGATAACT 57.097 30.769 0.00 0.00 0.00 2.24
2847 3213 7.807977 AAAGTGTGTGATGTTCTGATAACTT 57.192 32.000 0.00 0.00 0.00 2.66
2848 3214 8.902540 AAAGTGTGTGATGTTCTGATAACTTA 57.097 30.769 0.00 0.00 0.00 2.24
2849 3215 8.539770 AAGTGTGTGATGTTCTGATAACTTAG 57.460 34.615 0.00 0.00 0.00 2.18
2850 3216 6.591834 AGTGTGTGATGTTCTGATAACTTAGC 59.408 38.462 0.00 0.00 0.00 3.09
2851 3217 6.591834 GTGTGTGATGTTCTGATAACTTAGCT 59.408 38.462 0.00 0.00 0.00 3.32
2852 3218 7.759886 GTGTGTGATGTTCTGATAACTTAGCTA 59.240 37.037 0.00 0.00 0.00 3.32
2853 3219 7.976175 TGTGTGATGTTCTGATAACTTAGCTAG 59.024 37.037 0.00 0.00 0.00 3.42
2854 3220 7.976734 GTGTGATGTTCTGATAACTTAGCTAGT 59.023 37.037 0.00 0.00 39.32 2.57
2866 3232 6.856135 AACTTAGCTAGTTACCACAAACAC 57.144 37.500 6.75 0.00 45.22 3.32
2867 3233 6.170846 ACTTAGCTAGTTACCACAAACACT 57.829 37.500 0.00 0.00 31.29 3.55
2868 3234 6.589135 ACTTAGCTAGTTACCACAAACACTT 58.411 36.000 0.00 0.00 31.29 3.16
2869 3235 6.704937 ACTTAGCTAGTTACCACAAACACTTC 59.295 38.462 0.00 0.00 31.29 3.01
2870 3236 5.291905 AGCTAGTTACCACAAACACTTCT 57.708 39.130 0.00 0.00 0.00 2.85
2871 3237 5.681639 AGCTAGTTACCACAAACACTTCTT 58.318 37.500 0.00 0.00 0.00 2.52
2872 3238 6.120220 AGCTAGTTACCACAAACACTTCTTT 58.880 36.000 0.00 0.00 0.00 2.52
2873 3239 6.602009 AGCTAGTTACCACAAACACTTCTTTT 59.398 34.615 0.00 0.00 0.00 2.27
2874 3240 7.122204 AGCTAGTTACCACAAACACTTCTTTTT 59.878 33.333 0.00 0.00 0.00 1.94
2905 3271 8.746922 AAATATGTGACACATAAGCAAAGTTG 57.253 30.769 27.48 0.00 43.50 3.16
2906 3272 5.772825 ATGTGACACATAAGCAAAGTTGT 57.227 34.783 19.53 0.00 36.99 3.32
2907 3273 6.875948 ATGTGACACATAAGCAAAGTTGTA 57.124 33.333 19.53 0.00 36.99 2.41
2908 3274 6.875948 TGTGACACATAAGCAAAGTTGTAT 57.124 33.333 3.56 0.00 0.00 2.29
2909 3275 7.971183 TGTGACACATAAGCAAAGTTGTATA 57.029 32.000 3.56 0.00 0.00 1.47
2910 3276 7.802738 TGTGACACATAAGCAAAGTTGTATAC 58.197 34.615 3.56 0.00 0.00 1.47
2911 3277 7.659799 TGTGACACATAAGCAAAGTTGTATACT 59.340 33.333 3.56 0.00 39.32 2.12
2948 3314 8.458052 TGTGATACATAAGCAAAGTTGTATTGG 58.542 33.333 0.00 0.00 35.88 3.16
2949 3315 8.673711 GTGATACATAAGCAAAGTTGTATTGGA 58.326 33.333 0.00 0.00 35.88 3.53
2950 3316 8.892723 TGATACATAAGCAAAGTTGTATTGGAG 58.107 33.333 0.00 0.00 35.88 3.86
2951 3317 8.807948 ATACATAAGCAAAGTTGTATTGGAGT 57.192 30.769 0.00 0.00 32.76 3.85
2952 3318 6.913170 ACATAAGCAAAGTTGTATTGGAGTG 58.087 36.000 0.00 0.00 0.00 3.51
2953 3319 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
2954 3320 7.663905 ACATAAGCAAAGTTGTATTGGAGTGTA 59.336 33.333 0.00 0.00 0.00 2.90
2955 3321 8.677300 CATAAGCAAAGTTGTATTGGAGTGTAT 58.323 33.333 0.00 0.00 0.00 2.29
2956 3322 9.899661 ATAAGCAAAGTTGTATTGGAGTGTATA 57.100 29.630 0.00 0.00 0.00 1.47
2957 3323 8.630054 AAGCAAAGTTGTATTGGAGTGTATAA 57.370 30.769 0.00 0.00 0.00 0.98
2958 3324 8.807948 AGCAAAGTTGTATTGGAGTGTATAAT 57.192 30.769 0.00 0.00 0.00 1.28
2959 3325 8.677300 AGCAAAGTTGTATTGGAGTGTATAATG 58.323 33.333 0.00 0.00 0.00 1.90
2960 3326 8.458843 GCAAAGTTGTATTGGAGTGTATAATGT 58.541 33.333 0.00 0.00 0.00 2.71
2978 3344 9.761504 GTATAATGTTACTCTTAAGTTCCTCCC 57.238 37.037 1.63 0.00 36.92 4.30
2979 3345 5.695424 ATGTTACTCTTAAGTTCCTCCCC 57.305 43.478 1.63 0.00 36.92 4.81
3052 3435 1.696063 ATAATGGAGTGGCATGGCAC 58.304 50.000 37.59 37.59 0.00 5.01
3154 3553 1.655329 GCCGAGTCGATCTACCCTG 59.345 63.158 15.64 0.00 0.00 4.45
3160 3559 1.202952 AGTCGATCTACCCTGCCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
3162 3561 0.540830 CGATCTACCCTGCCCTAGCT 60.541 60.000 0.00 0.00 40.80 3.32
3163 3562 1.271982 CGATCTACCCTGCCCTAGCTA 60.272 57.143 0.00 0.00 40.80 3.32
3164 3563 2.818216 CGATCTACCCTGCCCTAGCTAA 60.818 54.545 0.00 0.00 40.80 3.09
3165 3564 2.083628 TCTACCCTGCCCTAGCTAAC 57.916 55.000 0.00 0.00 40.80 2.34
3185 3584 1.433471 CTATCAGGTCGTGCTCGCA 59.567 57.895 2.69 0.00 36.96 5.10
3197 3611 2.148365 GCTCGCACGTACGTACCAC 61.148 63.158 22.34 9.98 0.00 4.16
3252 3666 2.738846 CCCATCTACTAATCATGCGCAC 59.261 50.000 14.90 0.00 0.00 5.34
3254 3668 4.060900 CCATCTACTAATCATGCGCACTT 58.939 43.478 14.90 9.75 0.00 3.16
3281 3695 1.472990 GTTGTTGGCACGTTTACTGC 58.527 50.000 0.00 0.00 0.00 4.40
3289 3781 0.250124 CACGTTTACTGCCCTGTCCA 60.250 55.000 0.00 0.00 0.00 4.02
3308 3800 1.004745 CAATGGACCCAACTGTAGGCT 59.995 52.381 0.00 0.00 0.00 4.58
3338 3830 5.520288 TCACGAGCATATTTAGAACTCAAGC 59.480 40.000 0.00 0.00 0.00 4.01
3343 3835 5.065731 AGCATATTTAGAACTCAAGCAGCAC 59.934 40.000 0.00 0.00 0.00 4.40
3360 3852 4.383770 GCAGCACCCCTAATAAACAGTCTA 60.384 45.833 0.00 0.00 0.00 2.59
3362 3854 6.357367 CAGCACCCCTAATAAACAGTCTAAT 58.643 40.000 0.00 0.00 0.00 1.73
3363 3855 7.506114 CAGCACCCCTAATAAACAGTCTAATA 58.494 38.462 0.00 0.00 0.00 0.98
3375 3972 7.578169 AAACAGTCTAATAAAGTCTACGCAC 57.422 36.000 0.00 0.00 0.00 5.34
3392 3989 0.944311 CACCGTTCGGTCAGTTCTGG 60.944 60.000 14.16 0.00 36.17 3.86
3396 3993 0.106149 GTTCGGTCAGTTCTGGTGGT 59.894 55.000 0.00 0.00 0.00 4.16
3402 3999 2.417719 GTCAGTTCTGGTGGTGCTTAG 58.582 52.381 0.00 0.00 0.00 2.18
3403 4000 2.047061 TCAGTTCTGGTGGTGCTTAGT 58.953 47.619 0.00 0.00 0.00 2.24
3404 4001 3.006537 GTCAGTTCTGGTGGTGCTTAGTA 59.993 47.826 0.00 0.00 0.00 1.82
3405 4002 3.006537 TCAGTTCTGGTGGTGCTTAGTAC 59.993 47.826 0.00 0.00 0.00 2.73
3407 4004 4.219944 CAGTTCTGGTGGTGCTTAGTACTA 59.780 45.833 0.00 0.00 0.00 1.82
3408 4005 4.463186 AGTTCTGGTGGTGCTTAGTACTAG 59.537 45.833 2.23 0.00 0.00 2.57
3409 4006 2.758979 TCTGGTGGTGCTTAGTACTAGC 59.241 50.000 8.80 8.80 0.00 3.42
3410 4007 2.761208 CTGGTGGTGCTTAGTACTAGCT 59.239 50.000 15.39 0.00 30.05 3.32
3411 4008 3.170717 TGGTGGTGCTTAGTACTAGCTT 58.829 45.455 15.39 0.00 30.05 3.74
3412 4009 4.346730 TGGTGGTGCTTAGTACTAGCTTA 58.653 43.478 15.39 0.00 30.05 3.09
3413 4010 4.401519 TGGTGGTGCTTAGTACTAGCTTAG 59.598 45.833 15.39 9.44 30.05 2.18
3416 4013 6.238703 GGTGGTGCTTAGTACTAGCTTAGTAG 60.239 46.154 18.78 8.02 41.59 2.57
3454 4051 9.753674 AGGAATTATTAGATCAACAACTCCAAA 57.246 29.630 0.00 0.00 0.00 3.28
3464 4061 4.640201 TCAACAACTCCAAACAAGAGGAAG 59.360 41.667 0.00 0.00 35.58 3.46
3466 4063 2.887152 CAACTCCAAACAAGAGGAAGGG 59.113 50.000 0.00 0.00 35.58 3.95
3478 4075 2.585153 GAAGGGGGACGAAGGAGC 59.415 66.667 0.00 0.00 0.00 4.70
3492 4089 3.742327 CGAAGGAGCATTATTGGAGCTGA 60.742 47.826 0.00 0.00 39.02 4.26
3493 4090 3.939740 AGGAGCATTATTGGAGCTGAA 57.060 42.857 0.00 0.00 39.02 3.02
3495 4092 4.603131 AGGAGCATTATTGGAGCTGAAAA 58.397 39.130 0.00 0.00 39.02 2.29
3497 4094 4.440663 GGAGCATTATTGGAGCTGAAAACC 60.441 45.833 0.00 0.00 39.02 3.27
3498 4095 3.448660 AGCATTATTGGAGCTGAAAACCC 59.551 43.478 0.00 0.00 37.20 4.11
3510 4107 3.003480 CTGAAAACCCGATCAACTCCTC 58.997 50.000 0.00 0.00 0.00 3.71
3511 4108 2.637872 TGAAAACCCGATCAACTCCTCT 59.362 45.455 0.00 0.00 0.00 3.69
3517 4114 3.118592 ACCCGATCAACTCCTCTGATTTC 60.119 47.826 0.00 0.00 33.63 2.17
3518 4115 3.462021 CCGATCAACTCCTCTGATTTCC 58.538 50.000 0.00 0.00 33.63 3.13
3524 4121 1.961180 CTCCTCTGATTTCCCCGCGT 61.961 60.000 4.92 0.00 0.00 6.01
3529 4126 3.057734 CTCTGATTTCCCCGCGTAATAC 58.942 50.000 4.92 0.00 0.00 1.89
3572 4169 0.435008 GCAAGAGCAAGTGTCGTACG 59.565 55.000 9.53 9.53 41.58 3.67
3573 4170 0.435008 CAAGAGCAAGTGTCGTACGC 59.565 55.000 11.24 6.57 0.00 4.42
3574 4171 0.031585 AAGAGCAAGTGTCGTACGCA 59.968 50.000 11.24 9.37 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 3.542629 GACTTTGGTGGCTGTGCGC 62.543 63.158 0.00 0.00 38.13 6.09
84 87 1.598130 GACGCAGACTTTGGTGGCT 60.598 57.895 0.00 0.00 0.00 4.75
121 124 2.190578 GGGGAGCTGATTGTCCGG 59.809 66.667 0.00 0.00 33.13 5.14
125 128 4.115199 GGCCGGGGAGCTGATTGT 62.115 66.667 2.18 0.00 0.00 2.71
157 160 0.605319 ATGGCGACCGTGATTTGTGT 60.605 50.000 0.00 0.00 0.00 3.72
158 161 0.096976 GATGGCGACCGTGATTTGTG 59.903 55.000 0.00 0.00 0.00 3.33
159 162 0.321210 TGATGGCGACCGTGATTTGT 60.321 50.000 0.00 0.00 0.00 2.83
161 164 1.358725 CGTGATGGCGACCGTGATTT 61.359 55.000 0.00 0.00 0.00 2.17
184 187 1.525995 CATTTGGCCGGCGGTCTAT 60.526 57.895 32.34 21.21 0.00 1.98
272 277 0.324275 AGGCCTTGTGGTTTGTGTGT 60.324 50.000 0.00 0.00 35.27 3.72
278 283 2.524148 GGGCAGGCCTTGTGGTTT 60.524 61.111 0.00 0.00 36.10 3.27
279 284 4.621087 GGGGCAGGCCTTGTGGTT 62.621 66.667 13.81 0.00 36.10 3.67
375 382 0.325933 CAGTGTGCTCTGGGATGGAA 59.674 55.000 0.00 0.00 0.00 3.53
385 392 2.246739 TGCAGCGAACAGTGTGCTC 61.247 57.895 5.17 0.00 36.69 4.26
426 461 6.206634 TGTGGTAATTAAAGTGAGCTCCTTTG 59.793 38.462 27.03 0.00 34.20 2.77
445 480 2.668250 CGACGATTGAACACTGTGGTA 58.332 47.619 13.09 0.00 0.00 3.25
447 482 0.163788 GCGACGATTGAACACTGTGG 59.836 55.000 13.09 0.00 0.00 4.17
455 490 2.409378 GGTTAACTTCGCGACGATTGAA 59.591 45.455 20.33 4.60 35.23 2.69
456 491 1.987770 GGTTAACTTCGCGACGATTGA 59.012 47.619 20.33 3.13 35.23 2.57
457 492 1.990563 AGGTTAACTTCGCGACGATTG 59.009 47.619 20.33 5.24 35.23 2.67
458 493 2.257034 GAGGTTAACTTCGCGACGATT 58.743 47.619 20.33 11.44 35.23 3.34
459 494 1.200716 TGAGGTTAACTTCGCGACGAT 59.799 47.619 20.33 10.29 35.23 3.73
462 505 1.068055 TCCTGAGGTTAACTTCGCGAC 60.068 52.381 9.15 0.00 0.00 5.19
468 511 8.934023 TGTGATATTTTTCCTGAGGTTAACTT 57.066 30.769 5.42 0.00 0.00 2.66
552 600 3.851098 AGGTGAGCAAAACGAGATACTC 58.149 45.455 0.00 0.00 0.00 2.59
556 604 3.258372 TGTCTAGGTGAGCAAAACGAGAT 59.742 43.478 0.00 0.00 0.00 2.75
572 620 4.037923 ACAGGTGCCAAAATGTTTGTCTAG 59.962 41.667 0.47 0.00 0.00 2.43
573 621 3.957497 ACAGGTGCCAAAATGTTTGTCTA 59.043 39.130 0.47 0.00 0.00 2.59
574 622 2.765699 ACAGGTGCCAAAATGTTTGTCT 59.234 40.909 0.47 0.00 0.00 3.41
592 651 1.723542 CACTTCTTCTGCGCTGTACAG 59.276 52.381 18.93 18.93 36.44 2.74
595 654 1.336887 GGTCACTTCTTCTGCGCTGTA 60.337 52.381 9.73 0.14 0.00 2.74
598 657 1.373497 CGGTCACTTCTTCTGCGCT 60.373 57.895 9.73 0.00 0.00 5.92
601 660 2.156343 AACTCGGTCACTTCTTCTGC 57.844 50.000 0.00 0.00 0.00 4.26
602 661 4.570772 TGAAAAACTCGGTCACTTCTTCTG 59.429 41.667 0.00 0.00 0.00 3.02
603 662 4.766375 TGAAAAACTCGGTCACTTCTTCT 58.234 39.130 0.00 0.00 0.00 2.85
610 704 5.613358 AATGAGATGAAAAACTCGGTCAC 57.387 39.130 0.00 0.00 36.11 3.67
611 705 5.181245 GGAAATGAGATGAAAAACTCGGTCA 59.819 40.000 0.00 0.00 36.11 4.02
613 707 4.459337 GGGAAATGAGATGAAAAACTCGGT 59.541 41.667 0.00 0.00 36.11 4.69
634 728 7.234355 AGGCTTGGTATAGAATAAAGAATGGG 58.766 38.462 0.00 0.00 0.00 4.00
637 733 9.732130 GATGAGGCTTGGTATAGAATAAAGAAT 57.268 33.333 0.00 0.00 0.00 2.40
644 740 8.677870 AGATAAGATGAGGCTTGGTATAGAAT 57.322 34.615 0.00 0.00 0.00 2.40
645 741 7.952930 AGAGATAAGATGAGGCTTGGTATAGAA 59.047 37.037 0.00 0.00 0.00 2.10
646 742 7.474445 AGAGATAAGATGAGGCTTGGTATAGA 58.526 38.462 0.00 0.00 0.00 1.98
647 743 7.147915 GGAGAGATAAGATGAGGCTTGGTATAG 60.148 44.444 0.00 0.00 0.00 1.31
648 744 6.665680 GGAGAGATAAGATGAGGCTTGGTATA 59.334 42.308 0.00 0.00 0.00 1.47
650 746 4.835615 GGAGAGATAAGATGAGGCTTGGTA 59.164 45.833 0.00 0.00 0.00 3.25
652 748 3.007831 GGGAGAGATAAGATGAGGCTTGG 59.992 52.174 0.00 0.00 0.00 3.61
653 749 3.645212 TGGGAGAGATAAGATGAGGCTTG 59.355 47.826 0.00 0.00 0.00 4.01
654 750 3.933886 TGGGAGAGATAAGATGAGGCTT 58.066 45.455 0.00 0.00 0.00 4.35
655 751 3.627041 TGGGAGAGATAAGATGAGGCT 57.373 47.619 0.00 0.00 0.00 4.58
656 752 3.837146 TCATGGGAGAGATAAGATGAGGC 59.163 47.826 0.00 0.00 0.00 4.70
657 753 6.623979 ATTCATGGGAGAGATAAGATGAGG 57.376 41.667 0.00 0.00 0.00 3.86
660 756 7.382110 ACGTAATTCATGGGAGAGATAAGATG 58.618 38.462 0.00 0.00 0.00 2.90
661 757 7.453126 AGACGTAATTCATGGGAGAGATAAGAT 59.547 37.037 0.00 0.00 0.00 2.40
671 793 4.709886 TCTGAGAAGACGTAATTCATGGGA 59.290 41.667 13.68 5.36 0.00 4.37
672 794 5.011090 TCTGAGAAGACGTAATTCATGGG 57.989 43.478 13.68 3.61 0.00 4.00
688 810 9.429359 GACAAGATAATGTTTTCTCTTCTGAGA 57.571 33.333 0.00 0.00 39.44 3.27
689 811 9.434420 AGACAAGATAATGTTTTCTCTTCTGAG 57.566 33.333 0.00 0.00 36.27 3.35
693 823 8.454894 GGGAAGACAAGATAATGTTTTCTCTTC 58.545 37.037 9.59 0.00 40.15 2.87
696 826 7.066404 GGAGGGAAGACAAGATAATGTTTTCTC 59.934 40.741 9.59 6.58 42.34 2.87
712 842 3.291584 GGAAATTGATGGGAGGGAAGAC 58.708 50.000 0.00 0.00 0.00 3.01
741 873 3.779738 TCATTCATGGGTGGATGTACTGA 59.220 43.478 0.00 0.00 41.36 3.41
745 880 4.165758 TGTCATCATTCATGGGTGGATGTA 59.834 41.667 13.42 5.83 41.36 2.29
749 884 2.680513 CGTGTCATCATTCATGGGTGGA 60.681 50.000 0.00 0.00 32.64 4.02
750 885 1.672363 CGTGTCATCATTCATGGGTGG 59.328 52.381 0.00 0.00 32.64 4.61
751 886 2.358957 ACGTGTCATCATTCATGGGTG 58.641 47.619 0.00 0.00 32.64 4.61
752 887 2.787473 ACGTGTCATCATTCATGGGT 57.213 45.000 0.00 0.00 32.64 4.51
753 888 2.539688 CGTACGTGTCATCATTCATGGG 59.460 50.000 7.22 0.00 32.64 4.00
754 889 2.033747 GCGTACGTGTCATCATTCATGG 60.034 50.000 17.90 0.00 32.64 3.66
755 890 2.602660 TGCGTACGTGTCATCATTCATG 59.397 45.455 17.90 0.00 0.00 3.07
756 891 2.603110 GTGCGTACGTGTCATCATTCAT 59.397 45.455 17.90 0.00 0.00 2.57
757 892 1.989864 GTGCGTACGTGTCATCATTCA 59.010 47.619 17.90 0.00 0.00 2.57
758 893 1.007422 CGTGCGTACGTGTCATCATTC 60.007 52.381 18.32 0.00 44.99 2.67
759 894 0.989164 CGTGCGTACGTGTCATCATT 59.011 50.000 18.32 0.00 44.99 2.57
760 895 2.648972 CGTGCGTACGTGTCATCAT 58.351 52.632 18.32 0.00 44.99 2.45
761 896 4.140301 CGTGCGTACGTGTCATCA 57.860 55.556 18.32 1.71 44.99 3.07
770 905 2.394136 CCGAATGTGCGTGCGTAC 59.606 61.111 5.90 5.90 0.00 3.67
771 906 3.483665 GCCGAATGTGCGTGCGTA 61.484 61.111 0.00 0.00 0.00 4.42
773 908 4.164664 ATGCCGAATGTGCGTGCG 62.165 61.111 0.00 0.00 32.60 5.34
774 909 2.577644 CATGCCGAATGTGCGTGC 60.578 61.111 0.00 0.00 38.74 5.34
775 910 2.577644 GCATGCCGAATGTGCGTG 60.578 61.111 6.36 0.00 46.17 5.34
776 911 3.042842 CTGCATGCCGAATGTGCGT 62.043 57.895 16.68 0.00 41.61 5.24
777 912 2.277692 CTGCATGCCGAATGTGCG 60.278 61.111 16.68 0.00 41.61 5.34
778 913 0.451383 TAACTGCATGCCGAATGTGC 59.549 50.000 16.68 0.00 38.65 4.57
782 917 1.949525 GGATGTAACTGCATGCCGAAT 59.050 47.619 16.68 6.33 32.12 3.34
815 950 2.464459 CGGGCTCAGGTGCGATTTC 61.464 63.158 0.00 0.00 0.00 2.17
836 971 0.392729 CCTGCCTGAAGCTTCTGGAG 60.393 60.000 40.97 32.94 45.89 3.86
856 991 4.196826 GCTCGCGTGCTTGCTACG 62.197 66.667 24.65 11.19 43.93 3.51
903 1038 4.955774 ACGAACGGACGGTGTGGC 62.956 66.667 8.20 0.00 37.61 5.01
915 1050 3.110178 CCGGTTCCAGCGACGAAC 61.110 66.667 0.00 5.37 42.41 3.95
980 1125 0.470080 TGAGGAAGGAGCGGGATAGG 60.470 60.000 0.00 0.00 0.00 2.57
1005 1150 1.152567 AGAGAGATGAGGGAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
1007 1152 0.105760 TGGAGAGAGATGAGGGAGGC 60.106 60.000 0.00 0.00 0.00 4.70
1012 1157 1.317613 CGGAGTGGAGAGAGATGAGG 58.682 60.000 0.00 0.00 0.00 3.86
1035 1180 0.392327 GAAGAAGAGACTGGCTGGCC 60.392 60.000 4.43 4.43 0.00 5.36
1037 1182 2.566724 AGAAGAAGAAGAGACTGGCTGG 59.433 50.000 0.00 0.00 0.00 4.85
1041 1186 4.526262 TGGAGAAGAAGAAGAAGAGACTGG 59.474 45.833 0.00 0.00 0.00 4.00
1043 1188 4.220602 GCTGGAGAAGAAGAAGAAGAGACT 59.779 45.833 0.00 0.00 0.00 3.24
1044 1189 4.494484 GCTGGAGAAGAAGAAGAAGAGAC 58.506 47.826 0.00 0.00 0.00 3.36
1045 1190 3.192422 CGCTGGAGAAGAAGAAGAAGAGA 59.808 47.826 0.00 0.00 0.00 3.10
1046 1191 3.192422 TCGCTGGAGAAGAAGAAGAAGAG 59.808 47.826 0.00 0.00 0.00 2.85
1047 1192 3.157881 TCGCTGGAGAAGAAGAAGAAGA 58.842 45.455 0.00 0.00 0.00 2.87
1048 1193 3.510719 CTCGCTGGAGAAGAAGAAGAAG 58.489 50.000 0.00 0.00 43.27 2.85
1049 1194 2.353208 GCTCGCTGGAGAAGAAGAAGAA 60.353 50.000 0.00 0.00 43.27 2.52
1063 1208 4.243399 TAGCTCGCTCGCTCGCTG 62.243 66.667 10.64 0.00 41.30 5.18
1085 1230 1.425428 GCATTTTCGCTCACCTCCG 59.575 57.895 0.00 0.00 0.00 4.63
1240 1385 4.899352 TGAGAAGAAGGAAGGAAGAAGG 57.101 45.455 0.00 0.00 0.00 3.46
1245 1390 3.173965 ACCGATGAGAAGAAGGAAGGAA 58.826 45.455 0.00 0.00 0.00 3.36
1246 1391 2.821437 ACCGATGAGAAGAAGGAAGGA 58.179 47.619 0.00 0.00 0.00 3.36
1247 1392 3.618690 AACCGATGAGAAGAAGGAAGG 57.381 47.619 0.00 0.00 0.00 3.46
1252 1397 7.334421 TGGAAAGAATTAACCGATGAGAAGAAG 59.666 37.037 0.00 0.00 0.00 2.85
1300 1460 9.102757 CTGCTAATTAACTAGCTTGATTTCTCA 57.897 33.333 16.21 0.00 43.96 3.27
1308 1468 6.524586 GTGCAAACTGCTAATTAACTAGCTTG 59.475 38.462 16.21 12.97 45.31 4.01
1333 1493 8.163768 GCACTAGCTAGCTATCCATTATGATGG 61.164 44.444 24.36 10.26 45.04 3.51
1362 1522 2.163818 TTTGCCCTGTCTTGTCGTAG 57.836 50.000 0.00 0.00 0.00 3.51
1388 1550 2.663826 GTGTCCAACACCAAAAGCAA 57.336 45.000 0.00 0.00 43.05 3.91
1399 1561 7.254852 TCTTGTCATTTTAACTTGTGTCCAAC 58.745 34.615 0.00 0.00 0.00 3.77
1416 1578 6.729187 CGTTTCTTCCTTTCTTTCTTGTCAT 58.271 36.000 0.00 0.00 0.00 3.06
1417 1579 5.448632 GCGTTTCTTCCTTTCTTTCTTGTCA 60.449 40.000 0.00 0.00 0.00 3.58
1418 1580 4.970611 GCGTTTCTTCCTTTCTTTCTTGTC 59.029 41.667 0.00 0.00 0.00 3.18
1419 1581 4.640647 AGCGTTTCTTCCTTTCTTTCTTGT 59.359 37.500 0.00 0.00 0.00 3.16
1420 1582 5.175090 AGCGTTTCTTCCTTTCTTTCTTG 57.825 39.130 0.00 0.00 0.00 3.02
1421 1583 5.836821 AAGCGTTTCTTCCTTTCTTTCTT 57.163 34.783 0.00 0.00 0.00 2.52
1422 1584 5.836821 AAAGCGTTTCTTCCTTTCTTTCT 57.163 34.783 0.00 0.00 32.88 2.52
1423 1585 7.360361 TCATAAAGCGTTTCTTCCTTTCTTTC 58.640 34.615 0.00 0.00 32.88 2.62
1424 1586 7.272037 TCATAAAGCGTTTCTTCCTTTCTTT 57.728 32.000 0.00 0.00 32.88 2.52
1440 1602 4.186159 TGGTAACTAACGCCTCATAAAGC 58.814 43.478 0.00 0.00 37.61 3.51
1456 1618 6.097129 ACAGATTTCTCTAGGCTACTGGTAAC 59.903 42.308 9.86 0.00 0.00 2.50
1457 1619 6.195700 ACAGATTTCTCTAGGCTACTGGTAA 58.804 40.000 9.86 0.00 0.00 2.85
1458 1620 5.767670 ACAGATTTCTCTAGGCTACTGGTA 58.232 41.667 9.86 0.00 0.00 3.25
1459 1621 4.615513 ACAGATTTCTCTAGGCTACTGGT 58.384 43.478 9.86 0.00 0.00 4.00
1488 1650 3.636153 AGCAATCAAACCCTACTCCTC 57.364 47.619 0.00 0.00 0.00 3.71
1535 1697 2.619074 GGGGCAAAGTAGTCATTCTGCT 60.619 50.000 0.00 0.00 40.71 4.24
1546 1708 1.210967 CGTAATCCCAGGGGCAAAGTA 59.789 52.381 5.33 0.00 34.68 2.24
1548 1710 0.034477 ACGTAATCCCAGGGGCAAAG 60.034 55.000 5.33 0.00 34.68 2.77
1556 1718 3.113260 GGATTCTCCACGTAATCCCAG 57.887 52.381 14.44 0.00 43.58 4.45
1601 1766 0.683973 AATGGCAGGCTCGATAGGAG 59.316 55.000 0.00 0.00 46.06 3.69
1619 1784 1.635487 AGAAGCTAAGCACATGGGGAA 59.365 47.619 0.00 0.00 0.00 3.97
1620 1785 1.065199 CAGAAGCTAAGCACATGGGGA 60.065 52.381 0.00 0.00 0.00 4.81
1621 1786 1.386533 CAGAAGCTAAGCACATGGGG 58.613 55.000 0.00 0.00 0.00 4.96
1622 1787 0.737219 GCAGAAGCTAAGCACATGGG 59.263 55.000 0.00 0.00 37.91 4.00
1658 1826 3.104519 TGTGGCAAGAAATCCCATCAT 57.895 42.857 0.00 0.00 0.00 2.45
1663 1831 2.289569 TGCAAATGTGGCAAGAAATCCC 60.290 45.455 0.00 0.00 38.54 3.85
1664 1832 2.738314 GTGCAAATGTGGCAAGAAATCC 59.262 45.455 0.00 0.00 43.91 3.01
1665 1833 2.738314 GGTGCAAATGTGGCAAGAAATC 59.262 45.455 0.00 0.00 43.91 2.17
1666 1834 2.104451 TGGTGCAAATGTGGCAAGAAAT 59.896 40.909 0.00 0.00 43.91 2.17
1667 1835 1.483827 TGGTGCAAATGTGGCAAGAAA 59.516 42.857 0.00 0.00 43.91 2.52
1693 1896 3.485463 TGGAAAACTGTCAGTCGGATT 57.515 42.857 5.82 0.00 0.00 3.01
1697 1900 4.035091 TCAAACATGGAAAACTGTCAGTCG 59.965 41.667 5.82 0.00 0.00 4.18
1705 1908 4.101430 AGCCACAATCAAACATGGAAAACT 59.899 37.500 0.00 0.00 33.80 2.66
1713 1916 1.274167 CCTGCAGCCACAATCAAACAT 59.726 47.619 8.66 0.00 0.00 2.71
1726 1929 4.117661 GCTCAGCTTGCCTGCAGC 62.118 66.667 8.66 4.57 41.50 5.25
1727 1930 3.441290 GGCTCAGCTTGCCTGCAG 61.441 66.667 17.65 6.78 46.38 4.41
2371 2580 4.415332 CGCAAGCAAGCAGGCTGG 62.415 66.667 17.64 0.16 45.07 4.85
2372 2581 3.667282 ACGCAAGCAAGCAGGCTG 61.667 61.111 10.94 10.94 45.07 4.85
2375 2584 3.968568 TGCACGCAAGCAAGCAGG 61.969 61.111 4.57 0.00 42.46 4.85
2410 2619 3.695022 GATCACACGGACGGACGGG 62.695 68.421 1.57 1.57 44.31 5.28
2413 2622 1.674441 TCATAGATCACACGGACGGAC 59.326 52.381 0.00 0.00 0.00 4.79
2428 2637 0.869068 AGGAGACGACGCGATCATAG 59.131 55.000 15.93 0.00 0.00 2.23
2429 2638 1.263484 GAAGGAGACGACGCGATCATA 59.737 52.381 15.93 0.00 0.00 2.15
2430 2639 0.029567 GAAGGAGACGACGCGATCAT 59.970 55.000 15.93 0.00 0.00 2.45
2431 2640 1.428219 GAAGGAGACGACGCGATCA 59.572 57.895 15.93 0.00 0.00 2.92
2433 2642 1.313812 AAGGAAGGAGACGACGCGAT 61.314 55.000 15.93 0.00 0.00 4.58
2434 2643 1.970114 AAGGAAGGAGACGACGCGA 60.970 57.895 15.93 0.00 0.00 5.87
2435 2644 1.801913 CAAGGAAGGAGACGACGCG 60.802 63.158 3.53 3.53 0.00 6.01
2436 2645 2.095252 GCAAGGAAGGAGACGACGC 61.095 63.158 0.00 0.00 0.00 5.19
2437 2646 1.446272 GGCAAGGAAGGAGACGACG 60.446 63.158 0.00 0.00 0.00 5.12
2438 2647 0.250513 ATGGCAAGGAAGGAGACGAC 59.749 55.000 0.00 0.00 0.00 4.34
2459 2672 4.134563 AGCAAACTTAAACGACTCATGGT 58.865 39.130 0.00 0.00 0.00 3.55
2473 2686 0.472471 TCGACCCAGGAAGCAAACTT 59.528 50.000 0.00 0.00 39.43 2.66
2506 2809 2.490991 GGTTTTACAGCTCCACGAACT 58.509 47.619 0.00 0.00 0.00 3.01
2509 2816 0.390124 ACGGTTTTACAGCTCCACGA 59.610 50.000 0.00 0.00 0.00 4.35
2536 2863 6.974622 CAGTTTTACAGAAGCAAATTGACAGT 59.025 34.615 0.00 0.00 0.00 3.55
2574 2901 0.614294 TTGAAATTACTCGGGCGGGA 59.386 50.000 0.00 0.00 0.00 5.14
2597 2924 1.282930 GGCACGGTCGAACTCAACTC 61.283 60.000 0.00 0.00 0.00 3.01
2607 2934 0.600255 AGTTTTCAGAGGCACGGTCG 60.600 55.000 0.00 0.00 0.00 4.79
2610 2937 1.593196 TCAAGTTTTCAGAGGCACGG 58.407 50.000 0.00 0.00 0.00 4.94
2613 2940 4.279169 CCAGAATTCAAGTTTTCAGAGGCA 59.721 41.667 8.44 0.00 0.00 4.75
2615 2942 6.639632 TTCCAGAATTCAAGTTTTCAGAGG 57.360 37.500 8.44 0.00 0.00 3.69
2619 2946 9.927668 GGATTAATTCCAGAATTCAAGTTTTCA 57.072 29.630 8.44 0.00 44.74 2.69
2620 2947 9.076596 CGGATTAATTCCAGAATTCAAGTTTTC 57.923 33.333 8.44 0.00 45.78 2.29
2621 2948 8.585018 ACGGATTAATTCCAGAATTCAAGTTTT 58.415 29.630 8.44 0.00 45.78 2.43
2622 2949 8.122472 ACGGATTAATTCCAGAATTCAAGTTT 57.878 30.769 8.44 0.00 45.78 2.66
2647 3011 0.247460 CACTGGCAATCTCAGACGGA 59.753 55.000 0.00 0.00 36.22 4.69
2690 3056 1.410083 GCCCATTATGACCTGCCTCAA 60.410 52.381 0.00 0.00 0.00 3.02
2695 3061 2.057137 TCTTGCCCATTATGACCTGC 57.943 50.000 0.00 0.00 0.00 4.85
2696 3062 3.355378 TGTTCTTGCCCATTATGACCTG 58.645 45.455 0.00 0.00 0.00 4.00
2697 3063 3.737559 TGTTCTTGCCCATTATGACCT 57.262 42.857 0.00 0.00 0.00 3.85
2698 3064 5.133221 ACTATGTTCTTGCCCATTATGACC 58.867 41.667 0.00 0.00 0.00 4.02
2699 3065 6.058183 AGACTATGTTCTTGCCCATTATGAC 58.942 40.000 0.00 0.00 0.00 3.06
2700 3066 6.252599 AGACTATGTTCTTGCCCATTATGA 57.747 37.500 0.00 0.00 0.00 2.15
2701 3067 7.220030 ACTAGACTATGTTCTTGCCCATTATG 58.780 38.462 0.00 0.00 0.00 1.90
2702 3068 7.380423 ACTAGACTATGTTCTTGCCCATTAT 57.620 36.000 0.00 0.00 0.00 1.28
2703 3069 6.808321 ACTAGACTATGTTCTTGCCCATTA 57.192 37.500 0.00 0.00 0.00 1.90
2704 3070 5.700402 ACTAGACTATGTTCTTGCCCATT 57.300 39.130 0.00 0.00 0.00 3.16
2705 3071 6.384305 AGTTACTAGACTATGTTCTTGCCCAT 59.616 38.462 0.00 0.00 0.00 4.00
2706 3072 5.720041 AGTTACTAGACTATGTTCTTGCCCA 59.280 40.000 0.00 0.00 0.00 5.36
2707 3073 6.223351 AGTTACTAGACTATGTTCTTGCCC 57.777 41.667 0.00 0.00 0.00 5.36
2708 3074 8.248945 TGTAAGTTACTAGACTATGTTCTTGCC 58.751 37.037 14.00 0.00 0.00 4.52
2709 3075 9.074443 GTGTAAGTTACTAGACTATGTTCTTGC 57.926 37.037 14.00 0.00 0.00 4.01
2712 3078 8.738106 GGTGTGTAAGTTACTAGACTATGTTCT 58.262 37.037 14.00 0.00 0.00 3.01
2713 3079 8.517878 TGGTGTGTAAGTTACTAGACTATGTTC 58.482 37.037 14.00 0.00 0.00 3.18
2714 3080 8.302438 GTGGTGTGTAAGTTACTAGACTATGTT 58.698 37.037 14.00 0.00 0.00 2.71
2715 3081 7.668886 AGTGGTGTGTAAGTTACTAGACTATGT 59.331 37.037 14.00 0.00 0.00 2.29
2716 3082 8.053026 AGTGGTGTGTAAGTTACTAGACTATG 57.947 38.462 14.00 0.00 0.00 2.23
2717 3083 8.647256 AAGTGGTGTGTAAGTTACTAGACTAT 57.353 34.615 14.00 0.00 0.00 2.12
2718 3084 8.469309 AAAGTGGTGTGTAAGTTACTAGACTA 57.531 34.615 14.00 5.05 0.00 2.59
2719 3085 6.973460 AAGTGGTGTGTAAGTTACTAGACT 57.027 37.500 14.00 6.34 0.00 3.24
2720 3086 7.924947 AGAAAAGTGGTGTGTAAGTTACTAGAC 59.075 37.037 14.00 8.78 0.00 2.59
2721 3087 8.015185 AGAAAAGTGGTGTGTAAGTTACTAGA 57.985 34.615 14.00 0.00 0.00 2.43
2722 3088 9.408069 CTAGAAAAGTGGTGTGTAAGTTACTAG 57.592 37.037 14.00 0.00 0.00 2.57
2723 3089 9.135189 TCTAGAAAAGTGGTGTGTAAGTTACTA 57.865 33.333 14.00 1.06 0.00 1.82
2724 3090 7.924947 GTCTAGAAAAGTGGTGTGTAAGTTACT 59.075 37.037 14.00 0.00 0.00 2.24
2725 3091 7.924947 AGTCTAGAAAAGTGGTGTGTAAGTTAC 59.075 37.037 6.06 6.06 0.00 2.50
2726 3092 8.015185 AGTCTAGAAAAGTGGTGTGTAAGTTA 57.985 34.615 0.00 0.00 0.00 2.24
2727 3093 6.885922 AGTCTAGAAAAGTGGTGTGTAAGTT 58.114 36.000 0.00 0.00 0.00 2.66
2728 3094 6.481434 AGTCTAGAAAAGTGGTGTGTAAGT 57.519 37.500 0.00 0.00 0.00 2.24
2729 3095 8.088981 ACATAGTCTAGAAAAGTGGTGTGTAAG 58.911 37.037 0.00 0.00 0.00 2.34
2730 3096 7.959175 ACATAGTCTAGAAAAGTGGTGTGTAA 58.041 34.615 0.00 0.00 0.00 2.41
2731 3097 7.534723 ACATAGTCTAGAAAAGTGGTGTGTA 57.465 36.000 0.00 0.00 0.00 2.90
2732 3098 6.420913 ACATAGTCTAGAAAAGTGGTGTGT 57.579 37.500 0.00 0.00 0.00 3.72
2733 3099 8.088981 AGTAACATAGTCTAGAAAAGTGGTGTG 58.911 37.037 0.00 0.00 0.00 3.82
2734 3100 8.191534 AGTAACATAGTCTAGAAAAGTGGTGT 57.808 34.615 0.00 0.00 0.00 4.16
2742 3108 9.916360 TGTGGAGATAGTAACATAGTCTAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
2743 3109 9.562408 CTGTGGAGATAGTAACATAGTCTAGAA 57.438 37.037 0.00 0.00 0.00 2.10
2744 3110 8.715842 ACTGTGGAGATAGTAACATAGTCTAGA 58.284 37.037 0.00 0.00 30.96 2.43
2745 3111 8.911918 ACTGTGGAGATAGTAACATAGTCTAG 57.088 38.462 0.00 0.00 30.96 2.43
2746 3112 9.999660 CTACTGTGGAGATAGTAACATAGTCTA 57.000 37.037 0.00 0.00 36.78 2.59
2747 3113 8.715842 TCTACTGTGGAGATAGTAACATAGTCT 58.284 37.037 0.00 0.00 36.78 3.24
2748 3114 8.905660 TCTACTGTGGAGATAGTAACATAGTC 57.094 38.462 0.00 0.00 36.78 2.59
2751 3117 9.961264 CCTATCTACTGTGGAGATAGTAACATA 57.039 37.037 19.59 0.00 46.22 2.29
2752 3118 8.670490 TCCTATCTACTGTGGAGATAGTAACAT 58.330 37.037 19.59 0.00 46.22 2.71
2753 3119 8.042286 TCCTATCTACTGTGGAGATAGTAACA 57.958 38.462 19.59 4.49 46.22 2.41
2754 3120 8.785946 GTTCCTATCTACTGTGGAGATAGTAAC 58.214 40.741 19.59 17.21 46.22 2.50
2755 3121 8.500238 TGTTCCTATCTACTGTGGAGATAGTAA 58.500 37.037 19.59 11.46 46.22 2.24
2756 3122 8.042286 TGTTCCTATCTACTGTGGAGATAGTA 57.958 38.462 19.59 6.94 46.22 1.82
2757 3123 6.912426 TGTTCCTATCTACTGTGGAGATAGT 58.088 40.000 19.59 0.00 46.22 2.12
2758 3124 7.576666 GCATGTTCCTATCTACTGTGGAGATAG 60.577 44.444 16.14 16.14 46.79 2.08
2759 3125 6.209589 GCATGTTCCTATCTACTGTGGAGATA 59.790 42.308 0.00 0.60 35.30 1.98
2760 3126 5.011533 GCATGTTCCTATCTACTGTGGAGAT 59.988 44.000 0.00 0.00 37.43 2.75
2761 3127 4.342378 GCATGTTCCTATCTACTGTGGAGA 59.658 45.833 0.00 0.00 0.00 3.71
2762 3128 4.100035 TGCATGTTCCTATCTACTGTGGAG 59.900 45.833 0.00 0.00 0.00 3.86
2763 3129 4.030216 TGCATGTTCCTATCTACTGTGGA 58.970 43.478 0.00 0.00 0.00 4.02
2764 3130 4.406648 TGCATGTTCCTATCTACTGTGG 57.593 45.455 0.00 0.00 0.00 4.17
2765 3131 5.178061 TGTTGCATGTTCCTATCTACTGTG 58.822 41.667 0.00 0.00 0.00 3.66
2766 3132 5.420725 TGTTGCATGTTCCTATCTACTGT 57.579 39.130 0.00 0.00 0.00 3.55
2767 3133 6.317140 ACATTGTTGCATGTTCCTATCTACTG 59.683 38.462 0.00 0.00 0.00 2.74
2768 3134 6.418101 ACATTGTTGCATGTTCCTATCTACT 58.582 36.000 0.00 0.00 0.00 2.57
2769 3135 6.683974 ACATTGTTGCATGTTCCTATCTAC 57.316 37.500 0.00 0.00 0.00 2.59
2770 3136 8.978874 AATACATTGTTGCATGTTCCTATCTA 57.021 30.769 0.00 0.00 32.63 1.98
2771 3137 7.886629 AATACATTGTTGCATGTTCCTATCT 57.113 32.000 0.00 0.00 32.63 1.98
2776 3142 9.248291 CCTAATAAATACATTGTTGCATGTTCC 57.752 33.333 0.00 0.00 32.63 3.62
2777 3143 9.801873 ACCTAATAAATACATTGTTGCATGTTC 57.198 29.630 0.00 0.00 32.63 3.18
2805 3171 9.561069 ACACACTTTAAGAAACAATGAGTCTAT 57.439 29.630 0.00 0.00 0.00 1.98
2806 3172 8.826710 CACACACTTTAAGAAACAATGAGTCTA 58.173 33.333 0.00 0.00 0.00 2.59
2807 3173 7.552687 TCACACACTTTAAGAAACAATGAGTCT 59.447 33.333 0.00 0.00 0.00 3.24
2808 3174 7.693952 TCACACACTTTAAGAAACAATGAGTC 58.306 34.615 0.00 0.00 0.00 3.36
2809 3175 7.624360 TCACACACTTTAAGAAACAATGAGT 57.376 32.000 0.00 0.00 0.00 3.41
2810 3176 8.131100 ACATCACACACTTTAAGAAACAATGAG 58.869 33.333 0.00 0.00 0.00 2.90
2811 3177 7.995289 ACATCACACACTTTAAGAAACAATGA 58.005 30.769 0.00 0.00 0.00 2.57
2812 3178 8.633075 AACATCACACACTTTAAGAAACAATG 57.367 30.769 0.00 0.00 0.00 2.82
2813 3179 8.686334 AGAACATCACACACTTTAAGAAACAAT 58.314 29.630 0.00 0.00 0.00 2.71
2814 3180 7.967854 CAGAACATCACACACTTTAAGAAACAA 59.032 33.333 0.00 0.00 0.00 2.83
2815 3181 7.335673 TCAGAACATCACACACTTTAAGAAACA 59.664 33.333 0.00 0.00 0.00 2.83
2816 3182 7.693952 TCAGAACATCACACACTTTAAGAAAC 58.306 34.615 0.00 0.00 0.00 2.78
2817 3183 7.857734 TCAGAACATCACACACTTTAAGAAA 57.142 32.000 0.00 0.00 0.00 2.52
2818 3184 9.554395 TTATCAGAACATCACACACTTTAAGAA 57.446 29.630 0.00 0.00 0.00 2.52
2819 3185 8.988934 GTTATCAGAACATCACACACTTTAAGA 58.011 33.333 0.00 0.00 0.00 2.10
2820 3186 8.993121 AGTTATCAGAACATCACACACTTTAAG 58.007 33.333 0.00 0.00 0.00 1.85
2821 3187 8.902540 AGTTATCAGAACATCACACACTTTAA 57.097 30.769 0.00 0.00 0.00 1.52
2822 3188 8.902540 AAGTTATCAGAACATCACACACTTTA 57.097 30.769 0.00 0.00 0.00 1.85
2823 3189 7.807977 AAGTTATCAGAACATCACACACTTT 57.192 32.000 0.00 0.00 0.00 2.66
2824 3190 7.118390 GCTAAGTTATCAGAACATCACACACTT 59.882 37.037 0.00 0.00 0.00 3.16
2825 3191 6.591834 GCTAAGTTATCAGAACATCACACACT 59.408 38.462 0.00 0.00 0.00 3.55
2826 3192 6.591834 AGCTAAGTTATCAGAACATCACACAC 59.408 38.462 0.00 0.00 0.00 3.82
2827 3193 6.701340 AGCTAAGTTATCAGAACATCACACA 58.299 36.000 0.00 0.00 0.00 3.72
2828 3194 7.976734 ACTAGCTAAGTTATCAGAACATCACAC 59.023 37.037 0.00 0.00 33.35 3.82
2829 3195 8.067751 ACTAGCTAAGTTATCAGAACATCACA 57.932 34.615 0.00 0.00 33.35 3.58
2830 3196 8.934507 AACTAGCTAAGTTATCAGAACATCAC 57.065 34.615 0.00 0.00 46.85 3.06
2842 3208 7.729116 AGTGTTTGTGGTAACTAGCTAAGTTA 58.271 34.615 10.09 10.09 46.85 2.24
2844 3210 6.170846 AGTGTTTGTGGTAACTAGCTAAGT 57.829 37.500 0.00 0.00 41.49 2.24
2845 3211 6.929606 AGAAGTGTTTGTGGTAACTAGCTAAG 59.070 38.462 0.00 0.00 37.61 2.18
2846 3212 6.823497 AGAAGTGTTTGTGGTAACTAGCTAA 58.177 36.000 0.00 0.00 37.61 3.09
2847 3213 6.415206 AGAAGTGTTTGTGGTAACTAGCTA 57.585 37.500 0.00 0.00 37.61 3.32
2848 3214 5.291905 AGAAGTGTTTGTGGTAACTAGCT 57.708 39.130 0.00 0.00 37.61 3.32
2849 3215 6.373186 AAAGAAGTGTTTGTGGTAACTAGC 57.627 37.500 0.00 0.00 37.61 3.42
2879 3245 9.838975 CAACTTTGCTTATGTGTCACATATTTA 57.161 29.630 23.14 10.29 40.41 1.40
2880 3246 8.359642 ACAACTTTGCTTATGTGTCACATATTT 58.640 29.630 23.14 4.42 40.41 1.40
2881 3247 7.885297 ACAACTTTGCTTATGTGTCACATATT 58.115 30.769 23.14 11.81 40.41 1.28
2882 3248 7.452880 ACAACTTTGCTTATGTGTCACATAT 57.547 32.000 23.14 5.48 40.41 1.78
2883 3249 6.875948 ACAACTTTGCTTATGTGTCACATA 57.124 33.333 19.64 19.64 39.88 2.29
2884 3250 5.772825 ACAACTTTGCTTATGTGTCACAT 57.227 34.783 21.70 21.70 42.35 3.21
2885 3251 6.875948 ATACAACTTTGCTTATGTGTCACA 57.124 33.333 8.40 8.40 0.00 3.58
2886 3252 8.029642 AGTATACAACTTTGCTTATGTGTCAC 57.970 34.615 5.50 0.00 33.35 3.67
2887 3253 8.615878 AAGTATACAACTTTGCTTATGTGTCA 57.384 30.769 5.50 0.00 46.61 3.58
2922 3288 8.458052 CCAATACAACTTTGCTTATGTATCACA 58.542 33.333 0.00 0.00 37.85 3.58
2923 3289 8.673711 TCCAATACAACTTTGCTTATGTATCAC 58.326 33.333 0.00 0.00 37.85 3.06
2924 3290 8.800370 TCCAATACAACTTTGCTTATGTATCA 57.200 30.769 0.00 0.00 37.85 2.15
2925 3291 8.893727 ACTCCAATACAACTTTGCTTATGTATC 58.106 33.333 0.00 0.00 37.85 2.24
2926 3292 8.677300 CACTCCAATACAACTTTGCTTATGTAT 58.323 33.333 0.00 0.00 39.88 2.29
2927 3293 7.663905 ACACTCCAATACAACTTTGCTTATGTA 59.336 33.333 0.00 0.00 33.24 2.29
2928 3294 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
2929 3295 6.913170 ACACTCCAATACAACTTTGCTTATG 58.087 36.000 0.00 0.00 0.00 1.90
2930 3296 8.807948 ATACACTCCAATACAACTTTGCTTAT 57.192 30.769 0.00 0.00 0.00 1.73
2931 3297 9.727859 TTATACACTCCAATACAACTTTGCTTA 57.272 29.630 0.00 0.00 0.00 3.09
2932 3298 8.630054 TTATACACTCCAATACAACTTTGCTT 57.370 30.769 0.00 0.00 0.00 3.91
2933 3299 8.677300 CATTATACACTCCAATACAACTTTGCT 58.323 33.333 0.00 0.00 0.00 3.91
2934 3300 8.458843 ACATTATACACTCCAATACAACTTTGC 58.541 33.333 0.00 0.00 0.00 3.68
2952 3318 9.761504 GGGAGGAACTTAAGAGTAACATTATAC 57.238 37.037 10.09 0.00 41.55 1.47
2953 3319 8.931568 GGGGAGGAACTTAAGAGTAACATTATA 58.068 37.037 10.09 0.00 41.55 0.98
2954 3320 7.404980 TGGGGAGGAACTTAAGAGTAACATTAT 59.595 37.037 10.09 0.00 41.55 1.28
2955 3321 6.731919 TGGGGAGGAACTTAAGAGTAACATTA 59.268 38.462 10.09 0.00 41.55 1.90
2956 3322 5.550403 TGGGGAGGAACTTAAGAGTAACATT 59.450 40.000 10.09 0.00 41.55 2.71
2957 3323 5.098663 TGGGGAGGAACTTAAGAGTAACAT 58.901 41.667 10.09 0.00 41.55 2.71
2958 3324 4.495565 TGGGGAGGAACTTAAGAGTAACA 58.504 43.478 10.09 0.00 41.55 2.41
2959 3325 4.623409 GCTGGGGAGGAACTTAAGAGTAAC 60.623 50.000 10.09 0.00 41.55 2.50
2960 3326 3.518303 GCTGGGGAGGAACTTAAGAGTAA 59.482 47.826 10.09 0.00 41.55 2.24
2961 3327 3.105283 GCTGGGGAGGAACTTAAGAGTA 58.895 50.000 10.09 0.00 41.55 2.59
2962 3328 1.909986 GCTGGGGAGGAACTTAAGAGT 59.090 52.381 10.09 0.00 41.55 3.24
2963 3329 2.093235 CAGCTGGGGAGGAACTTAAGAG 60.093 54.545 10.09 0.00 41.55 2.85
2964 3330 1.909302 CAGCTGGGGAGGAACTTAAGA 59.091 52.381 10.09 0.00 41.55 2.10
2965 3331 1.630878 ACAGCTGGGGAGGAACTTAAG 59.369 52.381 19.93 0.00 41.55 1.85
2966 3332 1.742308 ACAGCTGGGGAGGAACTTAA 58.258 50.000 19.93 0.00 41.55 1.85
2967 3333 1.351017 CAACAGCTGGGGAGGAACTTA 59.649 52.381 19.93 0.00 41.55 2.24
2968 3334 0.111253 CAACAGCTGGGGAGGAACTT 59.889 55.000 19.93 0.00 41.55 2.66
2970 3336 1.973812 GCAACAGCTGGGGAGGAAC 60.974 63.158 19.93 0.00 0.00 3.62
2971 3337 2.129555 GAGCAACAGCTGGGGAGGAA 62.130 60.000 19.93 0.00 39.10 3.36
2972 3338 2.530151 AGCAACAGCTGGGGAGGA 60.530 61.111 19.93 0.00 37.19 3.71
2973 3339 2.045536 GAGCAACAGCTGGGGAGG 60.046 66.667 19.93 3.36 39.10 4.30
2974 3340 2.045536 GGAGCAACAGCTGGGGAG 60.046 66.667 19.93 5.64 39.10 4.30
2975 3341 2.530151 AGGAGCAACAGCTGGGGA 60.530 61.111 19.93 0.00 39.10 4.81
2976 3342 2.045536 GAGGAGCAACAGCTGGGG 60.046 66.667 19.93 10.65 39.10 4.96
2977 3343 2.435586 CGAGGAGCAACAGCTGGG 60.436 66.667 19.93 11.05 39.10 4.45
2978 3344 0.392193 ATTCGAGGAGCAACAGCTGG 60.392 55.000 19.93 1.57 39.10 4.85
2979 3345 1.005340 GATTCGAGGAGCAACAGCTG 58.995 55.000 13.48 13.48 39.10 4.24
3132 3531 3.285215 TAGATCGACTCGGCCGGC 61.285 66.667 27.83 21.18 0.00 6.13
3140 3539 0.851469 TAGGGCAGGGTAGATCGACT 59.149 55.000 5.91 0.00 0.00 4.18
3154 3553 1.903183 CCTGATAGGGTTAGCTAGGGC 59.097 57.143 0.00 0.00 39.06 5.19
3160 3559 1.538419 GCACGACCTGATAGGGTTAGC 60.538 57.143 0.00 0.00 40.58 3.09
3162 3561 2.029623 GAGCACGACCTGATAGGGTTA 58.970 52.381 0.00 0.00 40.58 2.85
3163 3562 0.824759 GAGCACGACCTGATAGGGTT 59.175 55.000 0.00 0.00 40.58 4.11
3164 3563 1.384989 CGAGCACGACCTGATAGGGT 61.385 60.000 0.00 0.00 40.58 4.34
3165 3564 1.360551 CGAGCACGACCTGATAGGG 59.639 63.158 0.00 0.00 40.58 3.53
3185 3584 1.370414 GCGTGTGTGGTACGTACGT 60.370 57.895 25.98 25.98 43.09 3.57
3188 3587 1.009903 GCATGCGTGTGTGGTACGTA 61.010 55.000 0.00 0.00 43.09 3.57
3189 3588 2.314647 GCATGCGTGTGTGGTACGT 61.315 57.895 0.00 0.00 43.09 3.57
3190 3589 2.474266 GCATGCGTGTGTGGTACG 59.526 61.111 0.00 0.00 43.93 3.67
3197 3611 4.840288 CATGGCCGCATGCGTGTG 62.840 66.667 35.55 22.85 42.61 3.82
3252 3666 2.561037 GCCAACAACCCCCACGAAG 61.561 63.158 0.00 0.00 0.00 3.79
3254 3668 3.810188 TGCCAACAACCCCCACGA 61.810 61.111 0.00 0.00 0.00 4.35
3262 3676 1.472990 GCAGTAAACGTGCCAACAAC 58.527 50.000 0.00 0.00 34.67 3.32
3289 3781 1.282157 GAGCCTACAGTTGGGTCCATT 59.718 52.381 19.26 0.00 43.90 3.16
3295 3787 1.208293 GAAGAGGAGCCTACAGTTGGG 59.792 57.143 2.99 0.00 0.00 4.12
3298 3790 1.546476 CGTGAAGAGGAGCCTACAGTT 59.454 52.381 0.00 0.00 0.00 3.16
3338 3830 4.222124 AGACTGTTTATTAGGGGTGCTG 57.778 45.455 0.00 0.00 0.00 4.41
3360 3852 2.919229 CGAACGGTGCGTAGACTTTATT 59.081 45.455 0.00 0.00 39.99 1.40
3362 3854 1.401409 CCGAACGGTGCGTAGACTTTA 60.401 52.381 7.88 0.00 39.99 1.85
3363 3855 0.665369 CCGAACGGTGCGTAGACTTT 60.665 55.000 7.88 0.00 39.99 2.66
3375 3972 0.944311 CACCAGAACTGACCGAACGG 60.944 60.000 11.83 11.83 42.03 4.44
3392 3989 5.579564 ACTAAGCTAGTACTAAGCACCAC 57.420 43.478 19.71 1.07 37.23 4.16
3396 3993 9.896645 TCTTAACTACTAAGCTAGTACTAAGCA 57.103 33.333 19.71 1.17 40.14 3.91
3428 4025 9.753674 TTTGGAGTTGTTGATCTAATAATTCCT 57.246 29.630 19.00 4.50 42.75 3.36
3429 4026 9.788960 GTTTGGAGTTGTTGATCTAATAATTCC 57.211 33.333 15.15 15.15 42.67 3.01
3433 4030 9.567776 TCTTGTTTGGAGTTGTTGATCTAATAA 57.432 29.630 0.00 0.00 0.00 1.40
3434 4031 9.219603 CTCTTGTTTGGAGTTGTTGATCTAATA 57.780 33.333 0.00 0.00 0.00 0.98
3450 4047 0.777446 TCCCCCTTCCTCTTGTTTGG 59.223 55.000 0.00 0.00 0.00 3.28
3454 4051 0.473117 TTCGTCCCCCTTCCTCTTGT 60.473 55.000 0.00 0.00 0.00 3.16
3464 4061 0.765510 ATAATGCTCCTTCGTCCCCC 59.234 55.000 0.00 0.00 0.00 5.40
3466 4063 2.158813 TCCAATAATGCTCCTTCGTCCC 60.159 50.000 0.00 0.00 0.00 4.46
3478 4075 3.694072 TCGGGTTTTCAGCTCCAATAATG 59.306 43.478 0.00 0.00 0.00 1.90
3492 4089 2.637872 TCAGAGGAGTTGATCGGGTTTT 59.362 45.455 0.00 0.00 0.00 2.43
3493 4090 2.257207 TCAGAGGAGTTGATCGGGTTT 58.743 47.619 0.00 0.00 0.00 3.27
3495 4092 2.166907 ATCAGAGGAGTTGATCGGGT 57.833 50.000 0.00 0.00 29.49 5.28
3497 4094 3.462021 GGAAATCAGAGGAGTTGATCGG 58.538 50.000 0.00 0.00 34.30 4.18
3498 4095 3.462021 GGGAAATCAGAGGAGTTGATCG 58.538 50.000 0.00 0.00 34.30 3.69
3510 4107 1.790623 CGTATTACGCGGGGAAATCAG 59.209 52.381 12.47 0.00 33.65 2.90
3511 4108 1.855513 CGTATTACGCGGGGAAATCA 58.144 50.000 12.47 0.00 33.65 2.57
3553 4150 0.435008 CGTACGACACTTGCTCTTGC 59.565 55.000 10.44 0.00 40.20 4.01
3622 4222 2.202730 GAGCCGTCTGCAGAGCTC 60.203 66.667 30.74 30.74 44.36 4.09
3626 4226 4.724602 GCACGAGCCGTCTGCAGA 62.725 66.667 13.74 13.74 44.83 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.