Multiple sequence alignment - TraesCS4A01G410500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G410500 chr4A 100.000 3389 0 0 1477 4865 683501844 683498456 0.000000e+00 6259.0
1 TraesCS4A01G410500 chr4A 100.000 1187 0 0 1 1187 683503320 683502134 0.000000e+00 2193.0
2 TraesCS4A01G410500 chr4D 89.770 2395 141 45 2150 4492 476317003 476314661 0.000000e+00 2970.0
3 TraesCS4A01G410500 chr4D 94.155 633 31 3 1 631 481077635 481078263 0.000000e+00 959.0
4 TraesCS4A01G410500 chr4D 93.924 576 30 2 1483 2057 476317571 476317000 0.000000e+00 865.0
5 TraesCS4A01G410500 chr4D 93.548 434 23 5 756 1187 476318074 476317644 4.110000e-180 641.0
6 TraesCS4A01G410500 chr4D 76.699 309 23 16 4560 4865 476314646 476314384 5.110000e-25 126.0
7 TraesCS4A01G410500 chr4B 91.204 1262 74 20 3066 4317 600671499 600670265 0.000000e+00 1681.0
8 TraesCS4A01G410500 chr4B 87.629 873 48 24 2150 2982 600672348 600671496 0.000000e+00 959.0
9 TraesCS4A01G410500 chr4B 92.530 589 32 3 1477 2057 600672929 600672345 0.000000e+00 833.0
10 TraesCS4A01G410500 chr4B 93.213 442 24 5 748 1187 600673433 600672996 0.000000e+00 645.0
11 TraesCS4A01G410500 chr4B 89.815 216 18 4 4425 4637 600670139 600669925 1.730000e-69 274.0
12 TraesCS4A01G410500 chr4B 94.545 110 5 1 2045 2154 322777848 322777956 8.370000e-38 169.0
13 TraesCS4A01G410500 chr4B 79.452 219 18 13 4647 4865 600669806 600669615 3.950000e-26 130.0
14 TraesCS4A01G410500 chr2B 94.770 631 29 1 1 631 138751761 138751135 0.000000e+00 979.0
15 TraesCS4A01G410500 chr2B 88.715 638 60 9 1 633 661429952 661429322 0.000000e+00 769.0
16 TraesCS4A01G410500 chr2B 89.041 146 10 4 2332 2472 210454936 210455080 5.000000e-40 176.0
17 TraesCS4A01G410500 chr5A 94.173 635 36 1 1 635 699472266 699471633 0.000000e+00 966.0
18 TraesCS4A01G410500 chr5A 93.661 631 37 3 1 631 557083518 557082891 0.000000e+00 941.0
19 TraesCS4A01G410500 chr5A 94.434 557 28 3 1 557 556744221 556744774 0.000000e+00 854.0
20 TraesCS4A01G410500 chr2A 94.295 631 31 2 1 631 710604161 710603536 0.000000e+00 961.0
21 TraesCS4A01G410500 chr2A 88.462 78 9 0 3181 3258 554014473 554014396 1.440000e-15 95.3
22 TraesCS4A01G410500 chr3D 91.930 632 46 4 1 630 433813306 433813934 0.000000e+00 880.0
23 TraesCS4A01G410500 chr3D 82.474 194 22 5 2367 2558 321885356 321885539 5.040000e-35 159.0
24 TraesCS4A01G410500 chr5D 90.665 632 52 5 1 631 408736890 408737515 0.000000e+00 833.0
25 TraesCS4A01G410500 chr3A 85.672 335 23 10 1553 1887 323689 323380 3.630000e-86 329.0
26 TraesCS4A01G410500 chr3A 82.653 196 21 6 2367 2561 402084022 402083839 1.400000e-35 161.0
27 TraesCS4A01G410500 chr7D 83.102 361 28 11 1553 1890 575915280 575914930 1.020000e-76 298.0
28 TraesCS4A01G410500 chr2D 87.755 147 11 5 2332 2472 152095749 152095894 1.080000e-36 165.0
29 TraesCS4A01G410500 chr2D 95.098 102 5 0 2053 2154 599307161 599307262 1.400000e-35 161.0
30 TraesCS4A01G410500 chr2D 95.098 102 5 0 2053 2154 610294414 610294515 1.400000e-35 161.0
31 TraesCS4A01G410500 chr2D 88.608 79 9 0 3181 3259 433218663 433218741 4.010000e-16 97.1
32 TraesCS4A01G410500 chr6D 95.098 102 5 0 2054 2155 108860649 108860750 1.400000e-35 161.0
33 TraesCS4A01G410500 chr3B 86.986 146 15 4 2392 2535 42700251 42700108 1.400000e-35 161.0
34 TraesCS4A01G410500 chr3B 80.203 197 25 6 2367 2561 397665303 397665119 8.490000e-28 135.0
35 TraesCS4A01G410500 chr5B 95.918 98 4 0 2057 2154 6886510 6886413 5.040000e-35 159.0
36 TraesCS4A01G410500 chr1D 95.918 98 4 0 2057 2154 444856827 444856730 5.040000e-35 159.0
37 TraesCS4A01G410500 chr1D 93.333 105 7 0 2050 2154 22440927 22441031 6.520000e-34 156.0
38 TraesCS4A01G410500 chr1D 90.789 76 7 0 4582 4657 394488541 394488466 8.610000e-18 102.0
39 TraesCS4A01G410500 chrUn 93.333 105 7 0 2050 2154 76605187 76605083 6.520000e-34 156.0
40 TraesCS4A01G410500 chr6B 90.517 116 9 2 2039 2154 188191513 188191626 8.430000e-33 152.0
41 TraesCS4A01G410500 chr7B 86.139 101 13 1 4558 4657 85826055 85826155 1.850000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G410500 chr4A 683498456 683503320 4864 True 4226.000000 6259 100.000000 1 4865 2 chr4A.!!$R1 4864
1 TraesCS4A01G410500 chr4D 476314384 476318074 3690 True 1150.500000 2970 88.485250 756 4865 4 chr4D.!!$R1 4109
2 TraesCS4A01G410500 chr4D 481077635 481078263 628 False 959.000000 959 94.155000 1 631 1 chr4D.!!$F1 630
3 TraesCS4A01G410500 chr4B 600669615 600673433 3818 True 753.666667 1681 88.973833 748 4865 6 chr4B.!!$R1 4117
4 TraesCS4A01G410500 chr2B 138751135 138751761 626 True 979.000000 979 94.770000 1 631 1 chr2B.!!$R1 630
5 TraesCS4A01G410500 chr2B 661429322 661429952 630 True 769.000000 769 88.715000 1 633 1 chr2B.!!$R2 632
6 TraesCS4A01G410500 chr5A 699471633 699472266 633 True 966.000000 966 94.173000 1 635 1 chr5A.!!$R2 634
7 TraesCS4A01G410500 chr5A 557082891 557083518 627 True 941.000000 941 93.661000 1 631 1 chr5A.!!$R1 630
8 TraesCS4A01G410500 chr5A 556744221 556744774 553 False 854.000000 854 94.434000 1 557 1 chr5A.!!$F1 556
9 TraesCS4A01G410500 chr2A 710603536 710604161 625 True 961.000000 961 94.295000 1 631 1 chr2A.!!$R2 630
10 TraesCS4A01G410500 chr3D 433813306 433813934 628 False 880.000000 880 91.930000 1 630 1 chr3D.!!$F2 629
11 TraesCS4A01G410500 chr5D 408736890 408737515 625 False 833.000000 833 90.665000 1 631 1 chr5D.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 740 0.390472 CGAAAGAGGAGAGGTGTGGC 60.390 60.0 0.0 0.00 0.0 5.01 F
1863 1876 0.034896 AGTGTGGCGACTTAACCTGG 59.965 55.0 0.0 0.00 0.0 4.45 F
3239 3381 0.039617 TGCGTGCAGGTTTACATTGC 60.040 50.0 8.4 2.75 38.3 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2430 0.776810 TTGGCCAAATGAGGGTGAGA 59.223 50.0 17.98 0.0 0.00 3.27 R
3545 3689 0.586319 CAACGGTGTTGAGCATTCGT 59.414 50.0 3.65 0.0 39.90 3.85 R
4372 4526 0.103937 GAGCTCTACTCGCTGCCATT 59.896 55.0 6.43 0.0 37.96 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.595382 GCTTGTCCAGAGTGCGTGT 60.595 57.895 0.00 0.00 0.00 4.49
138 139 0.608035 TGCTGGGTTTTGGATCGTCC 60.608 55.000 0.00 0.00 36.96 4.79
221 222 1.410850 GGTAGCCATAGAGCCCTGCA 61.411 60.000 0.00 0.00 0.00 4.41
240 241 3.083997 CGAGGAAGTGGGGGAGGG 61.084 72.222 0.00 0.00 0.00 4.30
312 313 1.529713 GAACCAAGGCCGGAACCAA 60.530 57.895 5.05 0.00 0.00 3.67
386 387 1.263356 TCTAGGGTTCAGAACGTGGG 58.737 55.000 7.22 0.00 0.00 4.61
395 396 1.152096 AGAACGTGGGGGAAGAGGT 60.152 57.895 0.00 0.00 0.00 3.85
402 403 1.982958 GTGGGGGAAGAGGTTGTTCTA 59.017 52.381 0.00 0.00 0.00 2.10
431 432 7.062322 ACCATGTAGAAATTATGATGGAAGCA 58.938 34.615 0.00 0.00 35.55 3.91
474 475 3.499157 GCCGCGGGTATTTATTGATAACA 59.501 43.478 29.38 0.00 0.00 2.41
476 477 5.505985 GCCGCGGGTATTTATTGATAACAAA 60.506 40.000 29.38 0.00 39.54 2.83
635 640 8.671921 GCCTACATGAGATATTTCAACATATGG 58.328 37.037 7.80 0.80 0.00 2.74
636 641 9.948964 CCTACATGAGATATTTCAACATATGGA 57.051 33.333 7.80 0.00 0.00 3.41
639 644 8.777413 ACATGAGATATTTCAACATATGGAACG 58.223 33.333 7.80 0.00 0.00 3.95
640 645 7.728847 TGAGATATTTCAACATATGGAACGG 57.271 36.000 7.80 0.00 0.00 4.44
641 646 6.710295 TGAGATATTTCAACATATGGAACGGG 59.290 38.462 7.80 0.00 0.00 5.28
642 647 6.837312 AGATATTTCAACATATGGAACGGGA 58.163 36.000 7.80 0.00 0.00 5.14
643 648 7.287061 AGATATTTCAACATATGGAACGGGAA 58.713 34.615 7.80 0.00 0.00 3.97
644 649 7.777910 AGATATTTCAACATATGGAACGGGAAA 59.222 33.333 7.80 7.67 0.00 3.13
645 650 6.597832 ATTTCAACATATGGAACGGGAAAA 57.402 33.333 7.80 0.00 0.00 2.29
646 651 5.637006 TTCAACATATGGAACGGGAAAAG 57.363 39.130 7.80 0.00 0.00 2.27
647 652 4.912586 TCAACATATGGAACGGGAAAAGA 58.087 39.130 7.80 0.00 0.00 2.52
648 653 4.698304 TCAACATATGGAACGGGAAAAGAC 59.302 41.667 7.80 0.00 0.00 3.01
649 654 4.295141 ACATATGGAACGGGAAAAGACA 57.705 40.909 7.80 0.00 0.00 3.41
650 655 4.855340 ACATATGGAACGGGAAAAGACAT 58.145 39.130 7.80 0.00 0.00 3.06
651 656 5.261216 ACATATGGAACGGGAAAAGACATT 58.739 37.500 7.80 0.00 0.00 2.71
652 657 6.419791 ACATATGGAACGGGAAAAGACATTA 58.580 36.000 7.80 0.00 0.00 1.90
653 658 6.887545 ACATATGGAACGGGAAAAGACATTAA 59.112 34.615 7.80 0.00 0.00 1.40
654 659 5.897377 ATGGAACGGGAAAAGACATTAAG 57.103 39.130 0.00 0.00 0.00 1.85
655 660 4.975631 TGGAACGGGAAAAGACATTAAGA 58.024 39.130 0.00 0.00 0.00 2.10
656 661 4.758165 TGGAACGGGAAAAGACATTAAGAC 59.242 41.667 0.00 0.00 0.00 3.01
657 662 4.758165 GGAACGGGAAAAGACATTAAGACA 59.242 41.667 0.00 0.00 0.00 3.41
658 663 5.414765 GGAACGGGAAAAGACATTAAGACAT 59.585 40.000 0.00 0.00 0.00 3.06
659 664 6.403309 GGAACGGGAAAAGACATTAAGACATC 60.403 42.308 0.00 0.00 0.00 3.06
660 665 5.556915 ACGGGAAAAGACATTAAGACATCA 58.443 37.500 0.00 0.00 0.00 3.07
661 666 6.180472 ACGGGAAAAGACATTAAGACATCAT 58.820 36.000 0.00 0.00 0.00 2.45
662 667 6.659242 ACGGGAAAAGACATTAAGACATCATT 59.341 34.615 0.00 0.00 0.00 2.57
663 668 6.968904 CGGGAAAAGACATTAAGACATCATTG 59.031 38.462 0.00 0.00 0.00 2.82
664 669 7.362056 CGGGAAAAGACATTAAGACATCATTGT 60.362 37.037 0.00 0.00 39.32 2.71
680 685 7.944061 ACATCATTGTCAAACTCATGAAAAGA 58.056 30.769 0.00 0.00 30.34 2.52
681 686 7.864379 ACATCATTGTCAAACTCATGAAAAGAC 59.136 33.333 0.00 3.79 30.34 3.01
682 687 7.332213 TCATTGTCAAACTCATGAAAAGACA 57.668 32.000 12.97 12.97 30.34 3.41
683 688 7.770201 TCATTGTCAAACTCATGAAAAGACAA 58.230 30.769 23.30 23.30 45.12 3.18
685 690 7.990541 TTGTCAAACTCATGAAAAGACAATG 57.009 32.000 19.97 1.27 38.95 2.82
686 691 7.332213 TGTCAAACTCATGAAAAGACAATGA 57.668 32.000 14.05 2.13 32.26 2.57
687 692 7.420002 TGTCAAACTCATGAAAAGACAATGAG 58.580 34.615 14.05 9.70 43.04 2.90
688 693 7.282901 TGTCAAACTCATGAAAAGACAATGAGA 59.717 33.333 16.51 1.20 40.69 3.27
689 694 7.589221 GTCAAACTCATGAAAAGACAATGAGAC 59.411 37.037 16.51 3.43 40.69 3.36
690 695 5.852738 ACTCATGAAAAGACAATGAGACG 57.147 39.130 16.51 0.00 40.69 4.18
691 696 5.300752 ACTCATGAAAAGACAATGAGACGT 58.699 37.500 16.51 0.00 40.69 4.34
692 697 5.178252 ACTCATGAAAAGACAATGAGACGTG 59.822 40.000 16.51 0.00 40.69 4.49
693 698 5.296748 TCATGAAAAGACAATGAGACGTGA 58.703 37.500 0.00 0.00 0.00 4.35
694 699 5.406477 TCATGAAAAGACAATGAGACGTGAG 59.594 40.000 0.00 0.00 0.00 3.51
695 700 4.058124 TGAAAAGACAATGAGACGTGAGG 58.942 43.478 0.00 0.00 0.00 3.86
696 701 4.202212 TGAAAAGACAATGAGACGTGAGGA 60.202 41.667 0.00 0.00 0.00 3.71
697 702 4.543590 AAAGACAATGAGACGTGAGGAT 57.456 40.909 0.00 0.00 0.00 3.24
698 703 3.516981 AGACAATGAGACGTGAGGATG 57.483 47.619 0.00 0.00 0.00 3.51
699 704 3.092301 AGACAATGAGACGTGAGGATGA 58.908 45.455 0.00 0.00 0.00 2.92
700 705 3.511540 AGACAATGAGACGTGAGGATGAA 59.488 43.478 0.00 0.00 0.00 2.57
701 706 3.854666 ACAATGAGACGTGAGGATGAAG 58.145 45.455 0.00 0.00 0.00 3.02
702 707 3.511540 ACAATGAGACGTGAGGATGAAGA 59.488 43.478 0.00 0.00 0.00 2.87
703 708 4.111198 CAATGAGACGTGAGGATGAAGAG 58.889 47.826 0.00 0.00 0.00 2.85
704 709 2.095461 TGAGACGTGAGGATGAAGAGG 58.905 52.381 0.00 0.00 0.00 3.69
705 710 1.407258 GAGACGTGAGGATGAAGAGGG 59.593 57.143 0.00 0.00 0.00 4.30
706 711 1.187087 GACGTGAGGATGAAGAGGGT 58.813 55.000 0.00 0.00 0.00 4.34
707 712 0.898320 ACGTGAGGATGAAGAGGGTG 59.102 55.000 0.00 0.00 0.00 4.61
708 713 1.186200 CGTGAGGATGAAGAGGGTGA 58.814 55.000 0.00 0.00 0.00 4.02
709 714 1.135915 CGTGAGGATGAAGAGGGTGAG 59.864 57.143 0.00 0.00 0.00 3.51
710 715 2.461695 GTGAGGATGAAGAGGGTGAGA 58.538 52.381 0.00 0.00 0.00 3.27
711 716 3.037549 GTGAGGATGAAGAGGGTGAGAT 58.962 50.000 0.00 0.00 0.00 2.75
712 717 4.219115 GTGAGGATGAAGAGGGTGAGATA 58.781 47.826 0.00 0.00 0.00 1.98
713 718 4.280677 GTGAGGATGAAGAGGGTGAGATAG 59.719 50.000 0.00 0.00 0.00 2.08
714 719 4.078922 TGAGGATGAAGAGGGTGAGATAGT 60.079 45.833 0.00 0.00 0.00 2.12
715 720 5.134509 TGAGGATGAAGAGGGTGAGATAGTA 59.865 44.000 0.00 0.00 0.00 1.82
716 721 5.390387 AGGATGAAGAGGGTGAGATAGTAC 58.610 45.833 0.00 0.00 0.00 2.73
717 722 4.216687 GGATGAAGAGGGTGAGATAGTACG 59.783 50.000 0.00 0.00 0.00 3.67
718 723 4.498894 TGAAGAGGGTGAGATAGTACGA 57.501 45.455 0.00 0.00 0.00 3.43
719 724 4.851843 TGAAGAGGGTGAGATAGTACGAA 58.148 43.478 0.00 0.00 0.00 3.85
720 725 5.258841 TGAAGAGGGTGAGATAGTACGAAA 58.741 41.667 0.00 0.00 0.00 3.46
721 726 5.357314 TGAAGAGGGTGAGATAGTACGAAAG 59.643 44.000 0.00 0.00 0.00 2.62
722 727 5.113446 AGAGGGTGAGATAGTACGAAAGA 57.887 43.478 0.00 0.00 0.00 2.52
723 728 5.127491 AGAGGGTGAGATAGTACGAAAGAG 58.873 45.833 0.00 0.00 0.00 2.85
724 729 4.208746 AGGGTGAGATAGTACGAAAGAGG 58.791 47.826 0.00 0.00 0.00 3.69
725 730 4.079901 AGGGTGAGATAGTACGAAAGAGGA 60.080 45.833 0.00 0.00 0.00 3.71
726 731 4.276431 GGGTGAGATAGTACGAAAGAGGAG 59.724 50.000 0.00 0.00 0.00 3.69
727 732 5.124645 GGTGAGATAGTACGAAAGAGGAGA 58.875 45.833 0.00 0.00 0.00 3.71
728 733 5.237779 GGTGAGATAGTACGAAAGAGGAGAG 59.762 48.000 0.00 0.00 0.00 3.20
729 734 5.237779 GTGAGATAGTACGAAAGAGGAGAGG 59.762 48.000 0.00 0.00 0.00 3.69
730 735 5.104444 TGAGATAGTACGAAAGAGGAGAGGT 60.104 44.000 0.00 0.00 0.00 3.85
731 736 5.127491 AGATAGTACGAAAGAGGAGAGGTG 58.873 45.833 0.00 0.00 0.00 4.00
732 737 3.157750 AGTACGAAAGAGGAGAGGTGT 57.842 47.619 0.00 0.00 0.00 4.16
733 738 2.820787 AGTACGAAAGAGGAGAGGTGTG 59.179 50.000 0.00 0.00 0.00 3.82
734 739 0.969894 ACGAAAGAGGAGAGGTGTGG 59.030 55.000 0.00 0.00 0.00 4.17
735 740 0.390472 CGAAAGAGGAGAGGTGTGGC 60.390 60.000 0.00 0.00 0.00 5.01
736 741 0.687354 GAAAGAGGAGAGGTGTGGCA 59.313 55.000 0.00 0.00 0.00 4.92
737 742 1.072331 GAAAGAGGAGAGGTGTGGCAA 59.928 52.381 0.00 0.00 0.00 4.52
738 743 1.140312 AAGAGGAGAGGTGTGGCAAA 58.860 50.000 0.00 0.00 0.00 3.68
739 744 1.140312 AGAGGAGAGGTGTGGCAAAA 58.860 50.000 0.00 0.00 0.00 2.44
740 745 1.202818 AGAGGAGAGGTGTGGCAAAAC 60.203 52.381 0.00 0.00 0.00 2.43
741 746 0.550914 AGGAGAGGTGTGGCAAAACA 59.449 50.000 0.00 0.00 0.00 2.83
742 747 0.954452 GGAGAGGTGTGGCAAAACAG 59.046 55.000 0.00 0.00 0.00 3.16
743 748 0.954452 GAGAGGTGTGGCAAAACAGG 59.046 55.000 0.00 0.00 0.00 4.00
744 749 1.109323 AGAGGTGTGGCAAAACAGGC 61.109 55.000 0.00 0.00 0.00 4.85
745 750 1.076044 AGGTGTGGCAAAACAGGCT 60.076 52.632 0.00 0.00 34.73 4.58
746 751 1.067916 GGTGTGGCAAAACAGGCTG 59.932 57.895 14.16 14.16 34.73 4.85
747 752 1.675720 GGTGTGGCAAAACAGGCTGT 61.676 55.000 15.88 15.88 34.73 4.40
748 753 0.528249 GTGTGGCAAAACAGGCTGTG 60.528 55.000 22.83 10.20 34.73 3.66
749 754 1.592400 GTGGCAAAACAGGCTGTGC 60.592 57.895 22.83 19.74 36.24 4.57
816 821 7.637709 TGATCGTTTTATTCCGTATGATCTG 57.362 36.000 0.00 0.00 33.80 2.90
824 829 1.337071 TCCGTATGATCTGGAGCGTTC 59.663 52.381 0.00 0.00 0.00 3.95
850 856 0.522180 GATCCGACGTCGCCAGATAT 59.478 55.000 31.73 16.23 38.18 1.63
909 915 1.068287 GCTCTCGACACAAGTCTCGC 61.068 60.000 0.00 0.00 42.73 5.03
988 994 1.305381 AGACCCTAGCCAAGCGAGT 60.305 57.895 0.00 0.00 29.47 4.18
1520 1526 1.003839 AGACCGCCGCTTTTCATGA 60.004 52.632 0.00 0.00 0.00 3.07
1523 1529 2.574212 CGCCGCTTTTCATGACGC 60.574 61.111 0.00 0.00 0.00 5.19
1551 1557 4.746115 GTGAAAATTGCAGATGTTTCAGCA 59.254 37.500 13.27 0.00 41.97 4.41
1598 1611 1.913951 ATGGCCTTGTCAGCGGATCA 61.914 55.000 3.32 0.00 0.00 2.92
1632 1645 0.549950 CCTGGATCTTCCTGGTGCAT 59.450 55.000 10.45 0.00 46.87 3.96
1731 1744 0.607489 CAGTGACCCAGGAGCAAAGG 60.607 60.000 0.00 0.00 0.00 3.11
1777 1790 1.503542 GCATTTCTGCGTGTGGGAG 59.496 57.895 0.00 0.00 38.92 4.30
1778 1791 1.503542 CATTTCTGCGTGTGGGAGC 59.496 57.895 0.00 0.00 33.43 4.70
1800 1813 8.260818 GGAGCACCACATATATGTATGATAAGT 58.739 37.037 23.86 10.42 40.74 2.24
1831 1844 3.877559 TGTTGCTGGAATCTAGGACATG 58.122 45.455 0.00 0.00 0.00 3.21
1845 1858 7.905604 TCTAGGACATGTATGTTGTTGAAAG 57.094 36.000 0.00 0.00 41.95 2.62
1846 1859 7.450074 TCTAGGACATGTATGTTGTTGAAAGT 58.550 34.615 0.00 0.00 41.95 2.66
1863 1876 0.034896 AGTGTGGCGACTTAACCTGG 59.965 55.000 0.00 0.00 0.00 4.45
1866 1879 1.003839 TGGCGACTTAACCTGGCAG 60.004 57.895 7.75 7.75 32.71 4.85
1890 1903 7.002879 AGTGGCATCTCTTATTATTGCAATCT 58.997 34.615 16.86 7.43 35.04 2.40
1891 1904 7.040617 AGTGGCATCTCTTATTATTGCAATCTG 60.041 37.037 16.86 3.20 35.04 2.90
1904 1917 2.938451 TGCAATCTGTTTAGAGCCATCG 59.062 45.455 0.00 0.00 36.14 3.84
1906 1919 3.535561 CAATCTGTTTAGAGCCATCGGT 58.464 45.455 0.00 0.00 36.14 4.69
1974 1988 4.599041 TGTATTATGCCAAGGAAGCAACT 58.401 39.130 0.00 0.00 44.83 3.16
1982 1996 4.830046 TGCCAAGGAAGCAACTAAATGTTA 59.170 37.500 0.00 0.00 37.28 2.41
2057 2071 6.313411 GCTGTATGGCTCTTGAGATGATATTC 59.687 42.308 1.30 0.00 0.00 1.75
2058 2072 6.705302 TGTATGGCTCTTGAGATGATATTCC 58.295 40.000 1.30 0.00 0.00 3.01
2059 2073 4.630644 TGGCTCTTGAGATGATATTCCC 57.369 45.455 1.30 0.00 0.00 3.97
2060 2074 4.237843 TGGCTCTTGAGATGATATTCCCT 58.762 43.478 1.30 0.00 0.00 4.20
2061 2075 4.285517 TGGCTCTTGAGATGATATTCCCTC 59.714 45.833 1.30 0.00 0.00 4.30
2062 2076 4.531732 GGCTCTTGAGATGATATTCCCTCT 59.468 45.833 1.30 0.00 0.00 3.69
2063 2077 5.481105 GCTCTTGAGATGATATTCCCTCTG 58.519 45.833 1.30 0.00 0.00 3.35
2064 2078 5.011943 GCTCTTGAGATGATATTCCCTCTGT 59.988 44.000 1.30 0.00 0.00 3.41
2065 2079 6.662865 TCTTGAGATGATATTCCCTCTGTC 57.337 41.667 0.00 0.00 0.00 3.51
2066 2080 5.541868 TCTTGAGATGATATTCCCTCTGTCC 59.458 44.000 0.00 0.00 0.00 4.02
2067 2081 3.829026 TGAGATGATATTCCCTCTGTCCG 59.171 47.826 0.00 0.00 0.00 4.79
2068 2082 3.169099 AGATGATATTCCCTCTGTCCGG 58.831 50.000 0.00 0.00 0.00 5.14
2069 2083 2.767644 TGATATTCCCTCTGTCCGGA 57.232 50.000 0.00 0.00 0.00 5.14
2070 2084 3.040655 TGATATTCCCTCTGTCCGGAA 57.959 47.619 5.23 0.00 42.24 4.30
2071 2085 3.380393 TGATATTCCCTCTGTCCGGAAA 58.620 45.455 5.23 0.00 41.39 3.13
2072 2086 3.973973 TGATATTCCCTCTGTCCGGAAAT 59.026 43.478 5.23 2.69 41.39 2.17
2073 2087 5.152193 TGATATTCCCTCTGTCCGGAAATA 58.848 41.667 5.23 5.24 41.39 1.40
2074 2088 3.840124 ATTCCCTCTGTCCGGAAATAC 57.160 47.619 5.23 0.00 41.39 1.89
2075 2089 2.544844 TCCCTCTGTCCGGAAATACT 57.455 50.000 5.23 0.00 0.00 2.12
2076 2090 2.829023 TCCCTCTGTCCGGAAATACTT 58.171 47.619 5.23 0.00 0.00 2.24
2077 2091 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
2078 2092 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
2079 2093 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
2080 2094 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
2081 2095 2.094390 TCTGTCCGGAAATACTTGTCGG 60.094 50.000 5.23 0.00 41.80 4.79
2082 2096 1.894466 TGTCCGGAAATACTTGTCGGA 59.106 47.619 5.23 0.00 46.06 4.55
2083 2097 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2084 2098 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2085 2099 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2086 2100 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2087 2101 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2088 2102 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2089 2103 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
2090 2104 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
2091 2105 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2092 2106 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
2093 2107 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
2094 2108 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
2095 2109 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
2096 2110 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
2097 2111 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
2098 2112 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
2099 2113 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
2100 2114 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
2101 2115 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
2102 2116 5.181433 TCGGAGAAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
2103 2117 5.048643 CGGAGAAATGGATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
2104 2118 6.148976 CGGAGAAATGGATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
2105 2119 7.148222 CGGAGAAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
2106 2120 8.524487 GGAGAAATGGATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
2107 2121 9.915629 GAGAAATGGATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
2121 2135 9.890629 TCTAGACGTATTTTAGTTCTAGGTACA 57.109 33.333 0.00 0.00 0.00 2.90
2124 2138 8.628280 AGACGTATTTTAGTTCTAGGTACATCC 58.372 37.037 0.00 0.00 0.00 3.51
2125 2139 8.297470 ACGTATTTTAGTTCTAGGTACATCCA 57.703 34.615 0.00 0.00 39.02 3.41
2126 2140 8.921205 ACGTATTTTAGTTCTAGGTACATCCAT 58.079 33.333 0.00 0.00 39.02 3.41
2127 2141 9.760077 CGTATTTTAGTTCTAGGTACATCCATT 57.240 33.333 0.00 0.00 39.02 3.16
2135 2149 8.778059 AGTTCTAGGTACATCCATTTTTATCCA 58.222 33.333 0.00 0.00 39.02 3.41
2136 2150 9.574516 GTTCTAGGTACATCCATTTTTATCCAT 57.425 33.333 0.00 0.00 39.02 3.41
2141 2155 9.136323 AGGTACATCCATTTTTATCCATTTCTC 57.864 33.333 0.00 0.00 39.02 2.87
2142 2156 9.136323 GGTACATCCATTTTTATCCATTTCTCT 57.864 33.333 0.00 0.00 35.97 3.10
2143 2157 9.956720 GTACATCCATTTTTATCCATTTCTCTG 57.043 33.333 0.00 0.00 0.00 3.35
2144 2158 8.827832 ACATCCATTTTTATCCATTTCTCTGA 57.172 30.769 0.00 0.00 0.00 3.27
2145 2159 8.689972 ACATCCATTTTTATCCATTTCTCTGAC 58.310 33.333 0.00 0.00 0.00 3.51
2146 2160 8.689061 CATCCATTTTTATCCATTTCTCTGACA 58.311 33.333 0.00 0.00 0.00 3.58
2147 2161 8.648698 TCCATTTTTATCCATTTCTCTGACAA 57.351 30.769 0.00 0.00 0.00 3.18
2148 2162 8.742777 TCCATTTTTATCCATTTCTCTGACAAG 58.257 33.333 0.00 0.00 0.00 3.16
2149 2163 8.526147 CCATTTTTATCCATTTCTCTGACAAGT 58.474 33.333 0.00 0.00 0.00 3.16
2168 2182 5.885912 ACAAGTATTTGTCTGTCAGTTGGTT 59.114 36.000 0.00 0.00 44.00 3.67
2169 2183 6.377146 ACAAGTATTTGTCTGTCAGTTGGTTT 59.623 34.615 0.00 0.00 44.00 3.27
2177 2193 7.083875 TGTCTGTCAGTTGGTTTTCTAAAAG 57.916 36.000 0.00 0.00 0.00 2.27
2225 2245 5.376854 AGCCATCTTATGTCAAACACAAC 57.623 39.130 0.00 0.00 38.97 3.32
2285 2305 7.182930 AGGACAACTCTAGTTTGGGAATCTTAT 59.817 37.037 10.37 0.00 35.83 1.73
2315 2335 3.837213 TGAAACTGCTTGCTATGCTTC 57.163 42.857 0.00 0.00 0.00 3.86
2380 2414 2.159057 CCTACCATTGGCTTGCCAATTC 60.159 50.000 30.44 0.00 38.21 2.17
2422 2456 3.515104 ACCCTCATTTGGCCAACTATTTG 59.485 43.478 20.35 11.06 0.00 2.32
2439 2473 7.288810 ACTATTTGGCAAAAATCTGTGAGAA 57.711 32.000 17.70 0.00 0.00 2.87
2462 2496 1.978617 GGTGGACACCCATTGGCAG 60.979 63.158 10.38 0.00 45.68 4.85
2558 2592 1.069596 GGGCAGCAAACCAAACAGG 59.930 57.895 0.00 0.00 45.67 4.00
2591 2625 6.183360 CCCCATGAAGTTAATCAACCTTCATC 60.183 42.308 12.80 0.00 38.73 2.92
2600 2634 2.187958 TCAACCTTCATCGGGTCTCAT 58.812 47.619 0.00 0.00 35.83 2.90
2601 2635 2.168521 TCAACCTTCATCGGGTCTCATC 59.831 50.000 0.00 0.00 35.83 2.92
2602 2636 2.166907 ACCTTCATCGGGTCTCATCT 57.833 50.000 0.00 0.00 30.15 2.90
2603 2637 2.035632 ACCTTCATCGGGTCTCATCTC 58.964 52.381 0.00 0.00 30.15 2.75
2604 2638 2.034878 CCTTCATCGGGTCTCATCTCA 58.965 52.381 0.00 0.00 0.00 3.27
2605 2639 2.223923 CCTTCATCGGGTCTCATCTCAC 60.224 54.545 0.00 0.00 0.00 3.51
2784 2826 3.434309 ACAAGGGAAATGCTATTGCTGT 58.566 40.909 0.00 0.00 40.48 4.40
2789 2831 3.891366 GGGAAATGCTATTGCTGTGGTAT 59.109 43.478 0.00 0.00 40.48 2.73
2802 2856 1.140852 TGTGGTATAGCTGGGATGCAC 59.859 52.381 0.00 0.00 34.99 4.57
2806 2860 2.038952 GGTATAGCTGGGATGCACATCA 59.961 50.000 12.43 0.00 39.54 3.07
2824 2878 6.513884 GCACATCATTCATGGTTATTGTCGAT 60.514 38.462 0.00 0.00 36.72 3.59
2933 2987 4.908601 TGGTGATTGTCTAACCATCTGT 57.091 40.909 0.00 0.00 39.05 3.41
2938 2992 5.120830 GTGATTGTCTAACCATCTGTGTGTC 59.879 44.000 0.00 0.00 0.00 3.67
2939 2993 3.297830 TGTCTAACCATCTGTGTGTCG 57.702 47.619 0.00 0.00 0.00 4.35
2982 3124 7.327214 TGGTTCAAAAGTCTTGTTGCTAAAAT 58.673 30.769 0.00 0.00 0.00 1.82
2983 3125 7.821846 TGGTTCAAAAGTCTTGTTGCTAAAATT 59.178 29.630 0.00 0.00 0.00 1.82
2984 3126 9.308318 GGTTCAAAAGTCTTGTTGCTAAAATTA 57.692 29.630 0.00 0.00 0.00 1.40
3013 3155 8.974060 TGTCTTCATACTTTACTTTTCTTGGT 57.026 30.769 0.00 0.00 0.00 3.67
3014 3156 9.052759 TGTCTTCATACTTTACTTTTCTTGGTC 57.947 33.333 0.00 0.00 0.00 4.02
3015 3157 9.052759 GTCTTCATACTTTACTTTTCTTGGTCA 57.947 33.333 0.00 0.00 0.00 4.02
3016 3158 9.273016 TCTTCATACTTTACTTTTCTTGGTCAG 57.727 33.333 0.00 0.00 0.00 3.51
3017 3159 8.974060 TTCATACTTTACTTTTCTTGGTCAGT 57.026 30.769 0.00 0.00 0.00 3.41
3023 3165 9.281371 ACTTTACTTTTCTTGGTCAGTATAACC 57.719 33.333 0.00 0.00 37.31 2.85
3024 3166 9.503399 CTTTACTTTTCTTGGTCAGTATAACCT 57.497 33.333 0.00 0.00 37.69 3.50
3025 3167 8.842358 TTACTTTTCTTGGTCAGTATAACCTG 57.158 34.615 0.00 0.00 37.69 4.00
3026 3168 6.838382 ACTTTTCTTGGTCAGTATAACCTGT 58.162 36.000 0.00 0.00 37.69 4.00
3027 3169 7.287810 ACTTTTCTTGGTCAGTATAACCTGTT 58.712 34.615 0.00 0.00 37.69 3.16
3028 3170 7.778382 ACTTTTCTTGGTCAGTATAACCTGTTT 59.222 33.333 0.00 0.00 37.69 2.83
3029 3171 8.528044 TTTTCTTGGTCAGTATAACCTGTTTT 57.472 30.769 0.00 0.00 37.69 2.43
3030 3172 8.528044 TTTCTTGGTCAGTATAACCTGTTTTT 57.472 30.769 0.00 0.00 37.69 1.94
3031 3173 9.629878 TTTCTTGGTCAGTATAACCTGTTTTTA 57.370 29.630 0.00 0.00 37.69 1.52
3032 3174 9.629878 TTCTTGGTCAGTATAACCTGTTTTTAA 57.370 29.630 0.00 0.00 37.69 1.52
3033 3175 9.802039 TCTTGGTCAGTATAACCTGTTTTTAAT 57.198 29.630 0.00 0.00 37.69 1.40
3034 3176 9.840427 CTTGGTCAGTATAACCTGTTTTTAATG 57.160 33.333 0.00 0.00 37.69 1.90
3035 3177 7.822658 TGGTCAGTATAACCTGTTTTTAATGC 58.177 34.615 0.00 0.00 37.69 3.56
3036 3178 7.668052 TGGTCAGTATAACCTGTTTTTAATGCT 59.332 33.333 0.00 0.00 37.69 3.79
3037 3179 7.968405 GGTCAGTATAACCTGTTTTTAATGCTG 59.032 37.037 3.59 3.59 33.78 4.41
3038 3180 7.968405 GTCAGTATAACCTGTTTTTAATGCTGG 59.032 37.037 8.01 0.00 34.02 4.85
3039 3181 7.668052 TCAGTATAACCTGTTTTTAATGCTGGT 59.332 33.333 8.01 0.00 36.27 4.00
3040 3182 7.754924 CAGTATAACCTGTTTTTAATGCTGGTG 59.245 37.037 0.00 0.00 35.21 4.17
3041 3183 6.664428 ATAACCTGTTTTTAATGCTGGTGT 57.336 33.333 0.00 0.00 35.21 4.16
3042 3184 5.351948 AACCTGTTTTTAATGCTGGTGTT 57.648 34.783 0.00 0.00 35.21 3.32
3043 3185 5.351948 ACCTGTTTTTAATGCTGGTGTTT 57.648 34.783 0.00 0.00 34.03 2.83
3044 3186 5.739959 ACCTGTTTTTAATGCTGGTGTTTT 58.260 33.333 0.00 0.00 34.03 2.43
3045 3187 6.176896 ACCTGTTTTTAATGCTGGTGTTTTT 58.823 32.000 0.00 0.00 34.03 1.94
3046 3188 6.093357 ACCTGTTTTTAATGCTGGTGTTTTTG 59.907 34.615 0.00 0.00 34.03 2.44
3047 3189 6.428385 TGTTTTTAATGCTGGTGTTTTTGG 57.572 33.333 0.00 0.00 0.00 3.28
3048 3190 5.163713 TGTTTTTAATGCTGGTGTTTTTGGC 60.164 36.000 0.00 0.00 0.00 4.52
3049 3191 3.827008 TTAATGCTGGTGTTTTTGGCA 57.173 38.095 0.00 0.00 37.32 4.92
3050 3192 2.706339 AATGCTGGTGTTTTTGGCAA 57.294 40.000 0.00 0.00 36.49 4.52
3051 3193 2.934886 ATGCTGGTGTTTTTGGCAAT 57.065 40.000 0.00 0.00 36.49 3.56
3052 3194 2.706339 TGCTGGTGTTTTTGGCAATT 57.294 40.000 0.00 0.00 0.00 2.32
3053 3195 3.827008 TGCTGGTGTTTTTGGCAATTA 57.173 38.095 0.00 0.00 0.00 1.40
3054 3196 4.348863 TGCTGGTGTTTTTGGCAATTAT 57.651 36.364 0.00 0.00 0.00 1.28
3055 3197 4.712476 TGCTGGTGTTTTTGGCAATTATT 58.288 34.783 0.00 0.00 0.00 1.40
3056 3198 5.128919 TGCTGGTGTTTTTGGCAATTATTT 58.871 33.333 0.00 0.00 0.00 1.40
3057 3199 5.008415 TGCTGGTGTTTTTGGCAATTATTTG 59.992 36.000 0.00 0.00 35.85 2.32
3091 3233 2.028420 TGCCTGCATATGTGTCTGAC 57.972 50.000 4.29 0.00 0.00 3.51
3092 3234 0.933097 GCCTGCATATGTGTCTGACG 59.067 55.000 4.29 0.00 0.00 4.35
3094 3236 2.621338 CCTGCATATGTGTCTGACGTT 58.379 47.619 4.29 0.00 0.00 3.99
3118 3260 9.336171 GTTGATGGAGCTCTTTATTTAGATTCT 57.664 33.333 14.64 0.00 0.00 2.40
3218 3360 4.521146 GCATGCTTATATGGCCATCTACT 58.479 43.478 24.80 8.37 0.00 2.57
3238 3380 2.414058 TTGCGTGCAGGTTTACATTG 57.586 45.000 8.40 0.00 0.00 2.82
3239 3381 0.039617 TGCGTGCAGGTTTACATTGC 60.040 50.000 8.40 2.75 38.30 3.56
3240 3382 0.240945 GCGTGCAGGTTTACATTGCT 59.759 50.000 8.40 0.00 38.60 3.91
3241 3383 1.466950 GCGTGCAGGTTTACATTGCTA 59.533 47.619 8.40 0.00 38.60 3.49
3243 3385 3.788797 GCGTGCAGGTTTACATTGCTATC 60.789 47.826 8.40 2.09 38.60 2.08
3244 3386 3.623060 CGTGCAGGTTTACATTGCTATCT 59.377 43.478 0.00 0.00 38.60 1.98
3245 3387 4.094887 CGTGCAGGTTTACATTGCTATCTT 59.905 41.667 0.00 0.00 38.60 2.40
3246 3388 5.335127 GTGCAGGTTTACATTGCTATCTTG 58.665 41.667 0.00 0.00 38.60 3.02
3247 3389 4.142403 TGCAGGTTTACATTGCTATCTTGC 60.142 41.667 9.13 0.00 38.60 4.01
3248 3390 4.142403 GCAGGTTTACATTGCTATCTTGCA 60.142 41.667 0.00 0.00 41.65 4.08
3249 3391 5.450965 GCAGGTTTACATTGCTATCTTGCAT 60.451 40.000 0.00 0.00 42.96 3.96
3250 3392 6.238731 GCAGGTTTACATTGCTATCTTGCATA 60.239 38.462 0.00 0.00 42.96 3.14
3251 3393 7.681782 GCAGGTTTACATTGCTATCTTGCATAA 60.682 37.037 0.00 0.00 42.96 1.90
3252 3394 8.355169 CAGGTTTACATTGCTATCTTGCATAAT 58.645 33.333 0.00 0.00 42.96 1.28
3253 3395 8.917088 AGGTTTACATTGCTATCTTGCATAATT 58.083 29.630 0.00 0.00 42.96 1.40
3254 3396 9.533253 GGTTTACATTGCTATCTTGCATAATTT 57.467 29.630 0.00 0.00 42.96 1.82
3259 3401 8.139989 ACATTGCTATCTTGCATAATTTTCTCC 58.860 33.333 0.00 0.00 42.96 3.71
3265 3407 4.096382 TCTTGCATAATTTTCTCCGCCTTC 59.904 41.667 0.00 0.00 0.00 3.46
3268 3410 4.142403 TGCATAATTTTCTCCGCCTTCTTG 60.142 41.667 0.00 0.00 0.00 3.02
3271 3413 2.649531 TTTTCTCCGCCTTCTTGGAA 57.350 45.000 0.00 0.00 38.35 3.53
3281 3423 4.021981 CCGCCTTCTTGGAAATTTTTCTCT 60.022 41.667 3.28 0.00 38.35 3.10
3297 3439 7.994425 TTTTTCTCTGCTCAATGGTTGTATA 57.006 32.000 0.00 0.00 0.00 1.47
3341 3483 1.572085 CTGCTGGAACGTGGAGCAAG 61.572 60.000 15.00 7.78 42.03 4.01
3350 3492 1.067495 ACGTGGAGCAAGCTTAGAGTC 60.067 52.381 0.00 0.00 0.00 3.36
3413 3555 4.640201 TGCTGGAGGTATGCATTCTTTTAC 59.360 41.667 3.54 0.00 0.00 2.01
3422 3564 4.241590 TGCATTCTTTTACTTGCAGTGG 57.758 40.909 0.00 0.00 39.98 4.00
3427 3571 4.093472 TCTTTTACTTGCAGTGGGCTTA 57.907 40.909 0.00 0.00 45.15 3.09
3491 3635 2.808543 CACTCTTTGTACAGGCTTCACC 59.191 50.000 0.00 0.00 39.61 4.02
3601 3745 2.039084 CTGTAAGCCCTCTTGACCACTT 59.961 50.000 0.00 0.00 33.85 3.16
3623 3767 3.068448 TGATCATATGCCAACCATGTTGC 59.932 43.478 0.00 0.00 35.34 4.17
3624 3768 2.454538 TCATATGCCAACCATGTTGCA 58.545 42.857 0.00 4.45 38.23 4.08
3628 3772 3.977134 ATGCCAACCATGTTGCATTTA 57.023 38.095 1.46 0.00 41.40 1.40
3633 3777 3.306225 CCAACCATGTTGCATTTACAGCT 60.306 43.478 1.46 0.00 0.00 4.24
3634 3778 4.309099 CAACCATGTTGCATTTACAGCTT 58.691 39.130 0.00 0.00 0.00 3.74
3635 3779 4.605640 ACCATGTTGCATTTACAGCTTT 57.394 36.364 0.00 0.00 0.00 3.51
3636 3780 4.309099 ACCATGTTGCATTTACAGCTTTG 58.691 39.130 0.00 0.00 0.00 2.77
3637 3781 4.202243 ACCATGTTGCATTTACAGCTTTGT 60.202 37.500 0.00 0.00 0.00 2.83
3638 3782 4.150980 CCATGTTGCATTTACAGCTTTGTG 59.849 41.667 0.00 0.00 0.00 3.33
3639 3783 3.122297 TGTTGCATTTACAGCTTTGTGC 58.878 40.909 0.00 0.00 43.29 4.57
3825 3973 1.131928 AAGTCCGGGCCCTGTTAACT 61.132 55.000 22.43 10.33 0.00 2.24
3847 3995 4.749310 AGCAAGTCGAGGCCAGCG 62.749 66.667 5.01 8.88 0.00 5.18
3852 4000 2.488087 AAGTCGAGGCCAGCGTACAC 62.488 60.000 16.17 8.61 0.00 2.90
3898 4049 1.544246 GGGAACCCTTGGTTGAAATCG 59.456 52.381 2.68 0.00 46.95 3.34
3899 4050 2.235891 GGAACCCTTGGTTGAAATCGT 58.764 47.619 2.68 0.00 46.95 3.73
3902 4053 2.938838 ACCCTTGGTTGAAATCGTTCA 58.061 42.857 0.00 0.00 42.12 3.18
3903 4054 4.202070 GAACCCTTGGTTGAAATCGTTCAA 60.202 41.667 2.68 0.00 46.95 2.69
3916 4067 3.417069 TCGTTCAAATGATGAGTGGGT 57.583 42.857 0.00 0.00 39.77 4.51
3917 4068 3.073678 TCGTTCAAATGATGAGTGGGTG 58.926 45.455 0.00 0.00 39.77 4.61
3980 4131 3.868077 CACAGCTTGCCTACTATGAGAAC 59.132 47.826 0.00 0.00 0.00 3.01
3984 4135 2.871182 TGCCTACTATGAGAACTGCG 57.129 50.000 0.00 0.00 0.00 5.18
3993 4144 5.779922 ACTATGAGAACTGCGTTTCTGTTA 58.220 37.500 4.43 0.00 35.90 2.41
3997 4148 5.237815 TGAGAACTGCGTTTCTGTTATCAT 58.762 37.500 4.43 0.00 44.36 2.45
3998 4149 5.120674 TGAGAACTGCGTTTCTGTTATCATG 59.879 40.000 4.43 0.00 44.36 3.07
4013 4164 8.762645 TCTGTTATCATGAGAACTATGGAGTTT 58.237 33.333 28.09 0.00 46.23 2.66
4036 4187 1.145819 GCAGAGAGGAGGACATGGC 59.854 63.158 0.00 0.00 0.00 4.40
4038 4189 2.107953 GAGAGGAGGACATGGCGC 59.892 66.667 0.00 0.00 0.00 6.53
4087 4238 9.391006 TGTATTTTTCGAGTTATATCAAAGGCT 57.609 29.630 0.00 0.00 0.00 4.58
4092 4243 8.506168 TTTCGAGTTATATCAAAGGCTCAATT 57.494 30.769 0.00 0.00 0.00 2.32
4150 4303 1.337823 TGCTCTTACCCTTGCGAGAAC 60.338 52.381 1.22 0.00 0.00 3.01
4208 4361 7.389053 CCTGAGACTGAATTGCTTAAGTTACTT 59.611 37.037 2.32 2.32 0.00 2.24
4210 4363 7.173218 TGAGACTGAATTGCTTAAGTTACTTGG 59.827 37.037 8.00 2.03 0.00 3.61
4233 4386 2.346803 CGTGTTTGGTGGAGTCTATGG 58.653 52.381 0.00 0.00 0.00 2.74
4276 4429 6.809689 TGAATGTTCAATAGCTTGCATTCTTG 59.190 34.615 14.54 0.00 39.75 3.02
4310 4464 5.207033 GGCAAAACAATGAATTTCTGCAAC 58.793 37.500 6.80 0.00 30.95 4.17
4313 4467 6.195060 GCAAAACAATGAATTTCTGCAACAAC 59.805 34.615 0.00 0.00 0.00 3.32
4317 4471 7.556733 ACAATGAATTTCTGCAACAACAAAT 57.443 28.000 0.00 0.00 0.00 2.32
4318 4472 7.987649 ACAATGAATTTCTGCAACAACAAATT 58.012 26.923 0.00 0.00 32.38 1.82
4320 4474 9.291664 CAATGAATTTCTGCAACAACAAATTTT 57.708 25.926 0.00 0.00 30.35 1.82
4321 4475 9.857957 AATGAATTTCTGCAACAACAAATTTTT 57.142 22.222 0.00 0.00 30.35 1.94
4380 4534 2.599973 CGTTGCAATTCTAAATGGCAGC 59.400 45.455 0.59 5.97 35.68 5.25
4395 4549 0.318614 GCAGCGAGTAGAGCTCATCC 60.319 60.000 17.77 2.67 44.06 3.51
4405 4559 1.344438 AGAGCTCATCCGTTTGTGTCA 59.656 47.619 17.77 0.00 0.00 3.58
4408 4562 2.485426 AGCTCATCCGTTTGTGTCATTG 59.515 45.455 0.00 0.00 0.00 2.82
4416 4570 4.332543 TCCGTTTGTGTCATTGATCTATGC 59.667 41.667 11.74 8.06 0.00 3.14
4430 4602 9.961265 CATTGATCTATGCAAATTCTACATTGT 57.039 29.630 4.18 0.00 0.00 2.71
4492 4665 5.048083 TGGTTCAATGTTTTCCATGTCTAGC 60.048 40.000 0.00 0.00 32.82 3.42
4497 4670 7.988737 TCAATGTTTTCCATGTCTAGCTATTG 58.011 34.615 0.00 0.00 32.82 1.90
4500 4673 6.472016 TGTTTTCCATGTCTAGCTATTGTCA 58.528 36.000 0.00 0.00 0.00 3.58
4546 4720 8.725148 ACTTATGTTGAAATCTTGCTAGAACTG 58.275 33.333 0.99 0.00 33.20 3.16
4553 4727 8.703604 TGAAATCTTGCTAGAACTGTGTATAC 57.296 34.615 0.99 0.00 33.20 1.47
4557 4731 8.879342 ATCTTGCTAGAACTGTGTATACAATC 57.121 34.615 7.25 4.34 33.11 2.67
4636 4811 9.878599 CACTAAAGTAATGATTCAAAACGTCTT 57.121 29.630 0.00 0.00 0.00 3.01
4657 4943 6.757478 GTCTTTTATTAGTGTACAGAGGGAGC 59.243 42.308 0.00 0.00 0.00 4.70
4659 4945 5.854010 TTATTAGTGTACAGAGGGAGCAG 57.146 43.478 0.00 0.00 0.00 4.24
4679 4965 3.021695 AGATGATTGTGGTGGCATTCTG 58.978 45.455 0.00 0.00 0.00 3.02
4707 4993 3.248024 TCAGGAATGAGGTAACCACACT 58.752 45.455 0.00 0.00 37.17 3.55
4719 5005 7.113658 AGGTAACCACACTGAACTCATATAG 57.886 40.000 0.00 0.00 37.17 1.31
4720 5006 6.668283 AGGTAACCACACTGAACTCATATAGT 59.332 38.462 0.00 0.00 37.38 2.12
4721 5007 7.837689 AGGTAACCACACTGAACTCATATAGTA 59.162 37.037 0.00 0.00 34.85 1.82
4736 5022 9.920133 ACTCATATAGTACATGCTATCAAACAG 57.080 33.333 0.00 0.00 36.36 3.16
4744 5030 9.236006 AGTACATGCTATCAAACAGAAAAATCT 57.764 29.630 0.00 0.00 0.00 2.40
4746 5032 8.114331 ACATGCTATCAAACAGAAAAATCTCA 57.886 30.769 0.00 0.00 0.00 3.27
4747 5033 8.242053 ACATGCTATCAAACAGAAAAATCTCAG 58.758 33.333 0.00 0.00 0.00 3.35
4749 5035 6.716628 TGCTATCAAACAGAAAAATCTCAGGT 59.283 34.615 0.00 0.00 0.00 4.00
4750 5036 7.231317 TGCTATCAAACAGAAAAATCTCAGGTT 59.769 33.333 0.00 0.00 0.00 3.50
4751 5037 8.730680 GCTATCAAACAGAAAAATCTCAGGTTA 58.269 33.333 0.00 0.00 0.00 2.85
4753 5039 6.970484 TCAAACAGAAAAATCTCAGGTTAGC 58.030 36.000 0.00 0.00 0.00 3.09
4754 5040 6.545666 TCAAACAGAAAAATCTCAGGTTAGCA 59.454 34.615 0.00 0.00 0.00 3.49
4755 5041 7.231317 TCAAACAGAAAAATCTCAGGTTAGCAT 59.769 33.333 0.00 0.00 0.00 3.79
4756 5042 6.506500 ACAGAAAAATCTCAGGTTAGCATG 57.493 37.500 0.00 0.00 0.00 4.06
4757 5043 6.006449 ACAGAAAAATCTCAGGTTAGCATGT 58.994 36.000 0.00 0.00 0.00 3.21
4758 5044 6.150140 ACAGAAAAATCTCAGGTTAGCATGTC 59.850 38.462 0.00 0.00 0.00 3.06
4759 5045 5.352569 AGAAAAATCTCAGGTTAGCATGTCG 59.647 40.000 0.00 0.00 0.00 4.35
4760 5046 3.895232 AATCTCAGGTTAGCATGTCGT 57.105 42.857 0.00 0.00 0.00 4.34
4761 5047 2.941453 TCTCAGGTTAGCATGTCGTC 57.059 50.000 0.00 0.00 0.00 4.20
4762 5048 2.447443 TCTCAGGTTAGCATGTCGTCT 58.553 47.619 0.00 0.00 0.00 4.18
4763 5049 2.423892 TCTCAGGTTAGCATGTCGTCTC 59.576 50.000 0.00 0.00 0.00 3.36
4764 5050 2.164422 CTCAGGTTAGCATGTCGTCTCA 59.836 50.000 0.00 0.00 0.00 3.27
4765 5051 2.760650 TCAGGTTAGCATGTCGTCTCAT 59.239 45.455 0.00 0.00 0.00 2.90
4766 5052 3.195610 TCAGGTTAGCATGTCGTCTCATT 59.804 43.478 0.00 0.00 0.00 2.57
4767 5053 4.401202 TCAGGTTAGCATGTCGTCTCATTA 59.599 41.667 0.00 0.00 0.00 1.90
4768 5054 4.742167 CAGGTTAGCATGTCGTCTCATTAG 59.258 45.833 0.00 0.00 0.00 1.73
4780 5066 5.048364 GTCGTCTCATTAGATGGATGCTACT 60.048 44.000 0.00 0.00 38.98 2.57
4784 5070 7.362487 CGTCTCATTAGATGGATGCTACTACAT 60.362 40.741 0.00 0.00 35.44 2.29
4785 5071 8.961634 GTCTCATTAGATGGATGCTACTACATA 58.038 37.037 0.00 0.00 33.30 2.29
4793 5079 9.094578 AGATGGATGCTACTACATAAATACTGT 57.905 33.333 0.00 0.00 0.00 3.55
4826 5112 4.024698 GCATGTCTAGAGCCAGCG 57.975 61.111 0.00 0.00 0.00 5.18
4857 5143 1.349357 GAGAACAAGGGTGAGAAGGCT 59.651 52.381 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.785859 GCCTCCATCCGGACTGCA 61.786 66.667 6.12 0.00 35.91 4.41
138 139 1.566018 GACAAGGACGGCAAGGAACG 61.566 60.000 0.00 0.00 0.00 3.95
221 222 2.284699 CTCCCCCACTTCCTCGGT 60.285 66.667 0.00 0.00 0.00 4.69
312 313 2.355108 CGTCTTCATCATCAACCCCAGT 60.355 50.000 0.00 0.00 0.00 4.00
386 387 5.812286 TGGTAATTAGAACAACCTCTTCCC 58.188 41.667 0.00 0.00 32.99 3.97
635 640 5.934935 TGTCTTAATGTCTTTTCCCGTTC 57.065 39.130 0.00 0.00 0.00 3.95
636 641 6.001460 TGATGTCTTAATGTCTTTTCCCGTT 58.999 36.000 0.00 0.00 0.00 4.44
637 642 5.556915 TGATGTCTTAATGTCTTTTCCCGT 58.443 37.500 0.00 0.00 0.00 5.28
638 643 6.683974 ATGATGTCTTAATGTCTTTTCCCG 57.316 37.500 0.00 0.00 0.00 5.14
639 644 7.830739 ACAATGATGTCTTAATGTCTTTTCCC 58.169 34.615 0.00 0.00 33.41 3.97
655 660 7.864379 GTCTTTTCATGAGTTTGACAATGATGT 59.136 33.333 0.00 0.00 44.25 3.06
656 661 7.863877 TGTCTTTTCATGAGTTTGACAATGATG 59.136 33.333 15.52 0.00 31.30 3.07
657 662 7.944061 TGTCTTTTCATGAGTTTGACAATGAT 58.056 30.769 15.52 0.00 31.30 2.45
658 663 7.332213 TGTCTTTTCATGAGTTTGACAATGA 57.668 32.000 15.52 3.99 31.30 2.57
659 664 7.990541 TTGTCTTTTCATGAGTTTGACAATG 57.009 32.000 20.97 6.24 37.82 2.82
661 666 7.770201 TCATTGTCTTTTCATGAGTTTGACAA 58.230 30.769 24.09 24.09 43.74 3.18
662 667 7.282901 TCTCATTGTCTTTTCATGAGTTTGACA 59.717 33.333 14.52 14.52 39.60 3.58
663 668 7.589221 GTCTCATTGTCTTTTCATGAGTTTGAC 59.411 37.037 7.97 4.62 39.60 3.18
664 669 7.518848 CGTCTCATTGTCTTTTCATGAGTTTGA 60.519 37.037 7.97 0.00 39.60 2.69
665 670 6.576313 CGTCTCATTGTCTTTTCATGAGTTTG 59.424 38.462 7.97 0.00 39.60 2.93
666 671 6.260936 ACGTCTCATTGTCTTTTCATGAGTTT 59.739 34.615 7.97 0.00 39.60 2.66
667 672 5.760253 ACGTCTCATTGTCTTTTCATGAGTT 59.240 36.000 7.97 0.00 39.60 3.01
668 673 5.178252 CACGTCTCATTGTCTTTTCATGAGT 59.822 40.000 7.97 0.00 39.60 3.41
669 674 5.406477 TCACGTCTCATTGTCTTTTCATGAG 59.594 40.000 0.00 2.53 39.87 2.90
670 675 5.296748 TCACGTCTCATTGTCTTTTCATGA 58.703 37.500 0.00 0.00 0.00 3.07
671 676 5.390251 CCTCACGTCTCATTGTCTTTTCATG 60.390 44.000 0.00 0.00 0.00 3.07
672 677 4.692625 CCTCACGTCTCATTGTCTTTTCAT 59.307 41.667 0.00 0.00 0.00 2.57
673 678 4.058124 CCTCACGTCTCATTGTCTTTTCA 58.942 43.478 0.00 0.00 0.00 2.69
674 679 4.307432 TCCTCACGTCTCATTGTCTTTTC 58.693 43.478 0.00 0.00 0.00 2.29
675 680 4.336889 TCCTCACGTCTCATTGTCTTTT 57.663 40.909 0.00 0.00 0.00 2.27
676 681 4.021104 TCATCCTCACGTCTCATTGTCTTT 60.021 41.667 0.00 0.00 0.00 2.52
677 682 3.511540 TCATCCTCACGTCTCATTGTCTT 59.488 43.478 0.00 0.00 0.00 3.01
678 683 3.092301 TCATCCTCACGTCTCATTGTCT 58.908 45.455 0.00 0.00 0.00 3.41
679 684 3.510388 TCATCCTCACGTCTCATTGTC 57.490 47.619 0.00 0.00 0.00 3.18
680 685 3.511540 TCTTCATCCTCACGTCTCATTGT 59.488 43.478 0.00 0.00 0.00 2.71
681 686 4.111198 CTCTTCATCCTCACGTCTCATTG 58.889 47.826 0.00 0.00 0.00 2.82
682 687 3.131933 CCTCTTCATCCTCACGTCTCATT 59.868 47.826 0.00 0.00 0.00 2.57
683 688 2.692557 CCTCTTCATCCTCACGTCTCAT 59.307 50.000 0.00 0.00 0.00 2.90
684 689 2.095461 CCTCTTCATCCTCACGTCTCA 58.905 52.381 0.00 0.00 0.00 3.27
685 690 1.407258 CCCTCTTCATCCTCACGTCTC 59.593 57.143 0.00 0.00 0.00 3.36
686 691 1.272760 ACCCTCTTCATCCTCACGTCT 60.273 52.381 0.00 0.00 0.00 4.18
687 692 1.134965 CACCCTCTTCATCCTCACGTC 60.135 57.143 0.00 0.00 0.00 4.34
688 693 0.898320 CACCCTCTTCATCCTCACGT 59.102 55.000 0.00 0.00 0.00 4.49
689 694 1.135915 CTCACCCTCTTCATCCTCACG 59.864 57.143 0.00 0.00 0.00 4.35
690 695 2.461695 TCTCACCCTCTTCATCCTCAC 58.538 52.381 0.00 0.00 0.00 3.51
691 696 2.928036 TCTCACCCTCTTCATCCTCA 57.072 50.000 0.00 0.00 0.00 3.86
692 697 4.479158 ACTATCTCACCCTCTTCATCCTC 58.521 47.826 0.00 0.00 0.00 3.71
693 698 4.551215 ACTATCTCACCCTCTTCATCCT 57.449 45.455 0.00 0.00 0.00 3.24
694 699 4.216687 CGTACTATCTCACCCTCTTCATCC 59.783 50.000 0.00 0.00 0.00 3.51
695 700 5.064558 TCGTACTATCTCACCCTCTTCATC 58.935 45.833 0.00 0.00 0.00 2.92
696 701 5.050126 TCGTACTATCTCACCCTCTTCAT 57.950 43.478 0.00 0.00 0.00 2.57
697 702 4.498894 TCGTACTATCTCACCCTCTTCA 57.501 45.455 0.00 0.00 0.00 3.02
698 703 5.589452 TCTTTCGTACTATCTCACCCTCTTC 59.411 44.000 0.00 0.00 0.00 2.87
699 704 5.507637 TCTTTCGTACTATCTCACCCTCTT 58.492 41.667 0.00 0.00 0.00 2.85
700 705 5.113446 TCTTTCGTACTATCTCACCCTCT 57.887 43.478 0.00 0.00 0.00 3.69
701 706 4.276431 CCTCTTTCGTACTATCTCACCCTC 59.724 50.000 0.00 0.00 0.00 4.30
702 707 4.079901 TCCTCTTTCGTACTATCTCACCCT 60.080 45.833 0.00 0.00 0.00 4.34
703 708 4.205587 TCCTCTTTCGTACTATCTCACCC 58.794 47.826 0.00 0.00 0.00 4.61
704 709 5.124645 TCTCCTCTTTCGTACTATCTCACC 58.875 45.833 0.00 0.00 0.00 4.02
705 710 5.237779 CCTCTCCTCTTTCGTACTATCTCAC 59.762 48.000 0.00 0.00 0.00 3.51
706 711 5.104444 ACCTCTCCTCTTTCGTACTATCTCA 60.104 44.000 0.00 0.00 0.00 3.27
707 712 5.237779 CACCTCTCCTCTTTCGTACTATCTC 59.762 48.000 0.00 0.00 0.00 2.75
708 713 5.127491 CACCTCTCCTCTTTCGTACTATCT 58.873 45.833 0.00 0.00 0.00 1.98
709 714 4.883006 ACACCTCTCCTCTTTCGTACTATC 59.117 45.833 0.00 0.00 0.00 2.08
710 715 4.641094 CACACCTCTCCTCTTTCGTACTAT 59.359 45.833 0.00 0.00 0.00 2.12
711 716 4.008330 CACACCTCTCCTCTTTCGTACTA 58.992 47.826 0.00 0.00 0.00 1.82
712 717 2.820787 CACACCTCTCCTCTTTCGTACT 59.179 50.000 0.00 0.00 0.00 2.73
713 718 2.094649 CCACACCTCTCCTCTTTCGTAC 60.095 54.545 0.00 0.00 0.00 3.67
714 719 2.168496 CCACACCTCTCCTCTTTCGTA 58.832 52.381 0.00 0.00 0.00 3.43
715 720 0.969894 CCACACCTCTCCTCTTTCGT 59.030 55.000 0.00 0.00 0.00 3.85
716 721 0.390472 GCCACACCTCTCCTCTTTCG 60.390 60.000 0.00 0.00 0.00 3.46
717 722 0.687354 TGCCACACCTCTCCTCTTTC 59.313 55.000 0.00 0.00 0.00 2.62
718 723 1.140312 TTGCCACACCTCTCCTCTTT 58.860 50.000 0.00 0.00 0.00 2.52
719 724 1.140312 TTTGCCACACCTCTCCTCTT 58.860 50.000 0.00 0.00 0.00 2.85
720 725 1.140312 TTTTGCCACACCTCTCCTCT 58.860 50.000 0.00 0.00 0.00 3.69
721 726 1.239347 GTTTTGCCACACCTCTCCTC 58.761 55.000 0.00 0.00 0.00 3.71
722 727 0.550914 TGTTTTGCCACACCTCTCCT 59.449 50.000 0.00 0.00 0.00 3.69
723 728 0.954452 CTGTTTTGCCACACCTCTCC 59.046 55.000 0.00 0.00 0.00 3.71
724 729 0.954452 CCTGTTTTGCCACACCTCTC 59.046 55.000 0.00 0.00 0.00 3.20
725 730 1.109323 GCCTGTTTTGCCACACCTCT 61.109 55.000 0.00 0.00 0.00 3.69
726 731 1.109323 AGCCTGTTTTGCCACACCTC 61.109 55.000 0.00 0.00 0.00 3.85
727 732 1.076044 AGCCTGTTTTGCCACACCT 60.076 52.632 0.00 0.00 0.00 4.00
728 733 1.067916 CAGCCTGTTTTGCCACACC 59.932 57.895 0.00 0.00 0.00 4.16
729 734 0.528249 CACAGCCTGTTTTGCCACAC 60.528 55.000 0.00 0.00 0.00 3.82
730 735 1.815196 CACAGCCTGTTTTGCCACA 59.185 52.632 0.00 0.00 0.00 4.17
731 736 1.592400 GCACAGCCTGTTTTGCCAC 60.592 57.895 0.00 0.00 0.00 5.01
732 737 2.813901 GCACAGCCTGTTTTGCCA 59.186 55.556 0.00 0.00 0.00 4.92
733 738 2.029518 GGCACAGCCTGTTTTGCC 59.970 61.111 8.84 8.84 46.69 4.52
749 754 0.106894 GGTCAATCCTCGCCCTAAGG 59.893 60.000 0.00 0.00 35.05 2.69
750 755 1.123928 AGGTCAATCCTCGCCCTAAG 58.876 55.000 0.00 0.00 44.42 2.18
751 756 2.433239 GTTAGGTCAATCCTCGCCCTAA 59.567 50.000 0.00 0.00 44.42 2.69
752 757 2.037144 GTTAGGTCAATCCTCGCCCTA 58.963 52.381 0.00 0.00 44.42 3.53
753 758 0.831307 GTTAGGTCAATCCTCGCCCT 59.169 55.000 0.00 0.00 44.42 5.19
754 759 0.539986 TGTTAGGTCAATCCTCGCCC 59.460 55.000 0.00 0.00 44.42 6.13
755 760 2.396590 TTGTTAGGTCAATCCTCGCC 57.603 50.000 0.00 0.00 44.42 5.54
762 767 6.659824 ACGGGAAATAGATTGTTAGGTCAAT 58.340 36.000 0.00 0.00 40.20 2.57
763 768 6.057321 ACGGGAAATAGATTGTTAGGTCAA 57.943 37.500 0.00 0.00 0.00 3.18
816 821 0.806492 GGATCAGGAACGAACGCTCC 60.806 60.000 8.35 8.35 0.00 4.70
824 829 1.582937 CGACGTCGGATCAGGAACG 60.583 63.158 29.70 0.00 35.37 3.95
976 982 3.197614 CGAGGACTCGCTTGGCTA 58.802 61.111 8.93 0.00 46.50 3.93
1520 1526 2.926420 GCAATTTTCACGGGGGCGT 61.926 57.895 0.00 0.00 0.00 5.68
1523 1529 1.135024 CATCTGCAATTTTCACGGGGG 60.135 52.381 0.00 0.00 0.00 5.40
1551 1557 8.368668 GGTTCAGGCAGTATCACTAAACTATAT 58.631 37.037 0.00 0.00 0.00 0.86
1598 1611 6.893020 AGATCCAGGTAGAAAATACAACCT 57.107 37.500 0.00 0.00 43.15 3.50
1620 1633 1.538512 CACAAGACATGCACCAGGAAG 59.461 52.381 0.00 0.00 0.00 3.46
1632 1645 2.226200 CGCAATCATCCAACACAAGACA 59.774 45.455 0.00 0.00 0.00 3.41
1731 1744 3.056465 AGTGCTACTGGACTAAGTGAAGC 60.056 47.826 0.00 0.00 43.13 3.86
1775 1788 9.658799 AACTTATCATACATATATGTGGTGCTC 57.341 33.333 25.48 0.00 41.89 4.26
1808 1821 4.574674 TGTCCTAGATTCCAGCAACAAT 57.425 40.909 0.00 0.00 0.00 2.71
1831 1844 3.002862 TCGCCACACTTTCAACAACATAC 59.997 43.478 0.00 0.00 0.00 2.39
1845 1858 1.574702 GCCAGGTTAAGTCGCCACAC 61.575 60.000 0.00 0.00 0.00 3.82
1846 1859 1.302192 GCCAGGTTAAGTCGCCACA 60.302 57.895 0.00 0.00 0.00 4.17
1863 1876 4.276678 TGCAATAATAAGAGATGCCACTGC 59.723 41.667 0.00 0.00 36.20 4.40
1866 1879 7.082602 CAGATTGCAATAATAAGAGATGCCAC 58.917 38.462 12.97 0.00 36.20 5.01
1890 1903 3.965379 TTACACCGATGGCTCTAAACA 57.035 42.857 0.00 0.00 0.00 2.83
1891 1904 3.002348 GCATTACACCGATGGCTCTAAAC 59.998 47.826 0.00 0.00 0.00 2.01
1931 1944 1.547675 GCATCCCCTGTCTCCACAAAA 60.548 52.381 0.00 0.00 29.82 2.44
2016 2030 5.289193 CCATACAGCAAATTGTTTCATTCCG 59.711 40.000 0.00 0.00 32.56 4.30
2057 2071 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
2058 2072 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
2059 2073 3.179830 CGACAAGTATTTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
2060 2074 2.094390 CCGACAAGTATTTCCGGACAGA 60.094 50.000 1.83 0.00 42.49 3.41
2061 2075 2.094390 TCCGACAAGTATTTCCGGACAG 60.094 50.000 1.83 0.00 43.47 3.51
2062 2076 1.894466 TCCGACAAGTATTTCCGGACA 59.106 47.619 1.83 0.00 43.47 4.02
2063 2077 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2064 2078 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2065 2079 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2066 2080 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2067 2081 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2068 2082 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
2069 2083 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2070 2084 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2071 2085 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2072 2086 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2073 2087 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2074 2088 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2075 2089 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2076 2090 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
2077 2091 6.383415 GTCTAGATACATCCATTTCTCCGAC 58.617 44.000 0.00 0.00 0.00 4.79
2078 2092 5.181433 CGTCTAGATACATCCATTTCTCCGA 59.819 44.000 0.00 0.00 0.00 4.55
2079 2093 5.048643 ACGTCTAGATACATCCATTTCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
2080 2094 6.334102 ACGTCTAGATACATCCATTTCTCC 57.666 41.667 0.00 0.00 0.00 3.71
2081 2095 9.915629 AAATACGTCTAGATACATCCATTTCTC 57.084 33.333 0.00 0.00 0.00 2.87
2095 2109 9.890629 TGTACCTAGAACTAAAATACGTCTAGA 57.109 33.333 0.00 0.00 0.00 2.43
2098 2112 8.628280 GGATGTACCTAGAACTAAAATACGTCT 58.372 37.037 0.00 0.00 35.41 4.18
2099 2113 8.408601 TGGATGTACCTAGAACTAAAATACGTC 58.591 37.037 0.00 0.00 39.86 4.34
2100 2114 8.297470 TGGATGTACCTAGAACTAAAATACGT 57.703 34.615 0.00 0.00 39.86 3.57
2101 2115 9.760077 AATGGATGTACCTAGAACTAAAATACG 57.240 33.333 0.00 0.00 39.86 3.06
2109 2123 8.778059 TGGATAAAAATGGATGTACCTAGAACT 58.222 33.333 0.00 0.00 39.86 3.01
2110 2124 8.974060 TGGATAAAAATGGATGTACCTAGAAC 57.026 34.615 0.00 0.00 39.86 3.01
2115 2129 9.136323 GAGAAATGGATAAAAATGGATGTACCT 57.864 33.333 0.00 0.00 39.86 3.08
2116 2130 9.136323 AGAGAAATGGATAAAAATGGATGTACC 57.864 33.333 0.00 0.00 39.54 3.34
2117 2131 9.956720 CAGAGAAATGGATAAAAATGGATGTAC 57.043 33.333 0.00 0.00 0.00 2.90
2118 2132 9.919416 TCAGAGAAATGGATAAAAATGGATGTA 57.081 29.630 0.00 0.00 0.00 2.29
2119 2133 8.689972 GTCAGAGAAATGGATAAAAATGGATGT 58.310 33.333 0.00 0.00 0.00 3.06
2120 2134 8.689061 TGTCAGAGAAATGGATAAAAATGGATG 58.311 33.333 0.00 0.00 0.00 3.51
2121 2135 8.827832 TGTCAGAGAAATGGATAAAAATGGAT 57.172 30.769 0.00 0.00 0.00 3.41
2122 2136 8.648698 TTGTCAGAGAAATGGATAAAAATGGA 57.351 30.769 0.00 0.00 0.00 3.41
2123 2137 8.526147 ACTTGTCAGAGAAATGGATAAAAATGG 58.474 33.333 0.00 0.00 0.00 3.16
2129 2143 9.739276 ACAAATACTTGTCAGAGAAATGGATAA 57.261 29.630 0.00 0.00 42.25 1.75
2145 2159 6.377327 AACCAACTGACAGACAAATACTTG 57.623 37.500 10.08 0.39 38.61 3.16
2146 2160 7.339466 AGAAAACCAACTGACAGACAAATACTT 59.661 33.333 10.08 0.00 0.00 2.24
2147 2161 6.828785 AGAAAACCAACTGACAGACAAATACT 59.171 34.615 10.08 0.00 0.00 2.12
2148 2162 7.027778 AGAAAACCAACTGACAGACAAATAC 57.972 36.000 10.08 0.00 0.00 1.89
2149 2163 8.740123 TTAGAAAACCAACTGACAGACAAATA 57.260 30.769 10.08 0.00 0.00 1.40
2150 2164 7.639113 TTAGAAAACCAACTGACAGACAAAT 57.361 32.000 10.08 0.00 0.00 2.32
2151 2165 7.455641 TTTAGAAAACCAACTGACAGACAAA 57.544 32.000 10.08 0.00 0.00 2.83
2152 2166 7.175990 ACTTTTAGAAAACCAACTGACAGACAA 59.824 33.333 10.08 0.00 0.00 3.18
2158 2172 7.023197 TGCTACTTTTAGAAAACCAACTGAC 57.977 36.000 0.00 0.00 0.00 3.51
2168 2182 7.316640 TGCTTGTGTTTTGCTACTTTTAGAAA 58.683 30.769 0.00 0.00 0.00 2.52
2169 2183 6.857956 TGCTTGTGTTTTGCTACTTTTAGAA 58.142 32.000 0.00 0.00 0.00 2.10
2225 2245 7.116736 TCTAGGGTTAGGCAAGGAAATTTAAG 58.883 38.462 0.00 0.00 0.00 1.85
2285 2305 6.147864 AGCAAGCAGTTTCAATAAACAAGA 57.852 33.333 4.04 0.00 46.18 3.02
2296 2316 2.751806 AGGAAGCATAGCAAGCAGTTTC 59.248 45.455 0.00 0.00 0.00 2.78
2297 2317 2.800250 AGGAAGCATAGCAAGCAGTTT 58.200 42.857 0.00 0.00 0.00 2.66
2300 2320 1.404391 CCAAGGAAGCATAGCAAGCAG 59.596 52.381 0.00 0.00 0.00 4.24
2315 2335 3.136123 CCGACATGCCAGCCAAGG 61.136 66.667 0.00 0.00 0.00 3.61
2380 2414 3.306294 GGTGAGAAATTCCTTGGCCAAAG 60.306 47.826 20.91 14.37 35.47 2.77
2386 2420 3.439857 TGAGGGTGAGAAATTCCTTGG 57.560 47.619 0.00 0.00 0.00 3.61
2396 2430 0.776810 TTGGCCAAATGAGGGTGAGA 59.223 50.000 17.98 0.00 0.00 3.27
2422 2456 5.166398 CCATTCTTCTCACAGATTTTTGCC 58.834 41.667 0.00 0.00 0.00 4.52
2474 2508 0.807496 GTCATTGTCTGGCTTCCTGC 59.193 55.000 0.00 0.00 41.94 4.85
2476 2510 1.067295 TGGTCATTGTCTGGCTTCCT 58.933 50.000 0.00 0.00 0.00 3.36
2478 2512 2.783135 TCTTGGTCATTGTCTGGCTTC 58.217 47.619 0.00 0.00 0.00 3.86
2481 2515 3.507233 TCAAATCTTGGTCATTGTCTGGC 59.493 43.478 0.00 0.00 0.00 4.85
2529 2563 4.656575 TGGTTTGCTGCCCATACTATACTA 59.343 41.667 0.00 0.00 0.00 1.82
2530 2564 3.458118 TGGTTTGCTGCCCATACTATACT 59.542 43.478 0.00 0.00 0.00 2.12
2531 2565 3.815809 TGGTTTGCTGCCCATACTATAC 58.184 45.455 0.00 0.00 0.00 1.47
2532 2566 4.511786 TTGGTTTGCTGCCCATACTATA 57.488 40.909 0.00 0.00 0.00 1.31
2533 2567 3.380471 TTGGTTTGCTGCCCATACTAT 57.620 42.857 0.00 0.00 0.00 2.12
2575 2609 4.514401 AGACCCGATGAAGGTTGATTAAC 58.486 43.478 0.00 0.00 37.88 2.01
2576 2610 4.224147 TGAGACCCGATGAAGGTTGATTAA 59.776 41.667 0.00 0.00 37.88 1.40
2578 2612 2.571653 TGAGACCCGATGAAGGTTGATT 59.428 45.455 0.00 0.00 37.88 2.57
2584 2618 2.034878 TGAGATGAGACCCGATGAAGG 58.965 52.381 0.00 0.00 0.00 3.46
2591 2625 2.095461 TGAAGAGTGAGATGAGACCCG 58.905 52.381 0.00 0.00 0.00 5.28
2600 2634 1.971357 GGGGTGTTCTGAAGAGTGAGA 59.029 52.381 0.00 0.00 0.00 3.27
2601 2635 1.002544 GGGGGTGTTCTGAAGAGTGAG 59.997 57.143 0.00 0.00 0.00 3.51
2602 2636 1.056660 GGGGGTGTTCTGAAGAGTGA 58.943 55.000 0.00 0.00 0.00 3.41
2603 2637 1.059913 AGGGGGTGTTCTGAAGAGTG 58.940 55.000 0.00 0.00 0.00 3.51
2604 2638 1.421646 CAAGGGGGTGTTCTGAAGAGT 59.578 52.381 0.00 0.00 0.00 3.24
2605 2639 1.421646 ACAAGGGGGTGTTCTGAAGAG 59.578 52.381 0.00 0.00 0.00 2.85
2701 2740 9.760660 GCTACAAGAATACAAAACATAGAAGTG 57.239 33.333 0.00 0.00 0.00 3.16
2752 2794 6.458210 AGCATTTCCCTTGTTTATGTTTCAG 58.542 36.000 0.00 0.00 0.00 3.02
2759 2801 6.155049 ACAGCAATAGCATTTCCCTTGTTTAT 59.845 34.615 0.00 0.00 45.49 1.40
2784 2826 1.506025 TGTGCATCCCAGCTATACCA 58.494 50.000 0.00 0.00 34.99 3.25
2789 2831 2.173143 TGAATGATGTGCATCCCAGCTA 59.827 45.455 9.39 0.00 35.78 3.32
2802 2856 6.962686 ACATCGACAATAACCATGAATGATG 58.037 36.000 0.00 0.00 36.47 3.07
2806 2860 7.050377 AGAGAACATCGACAATAACCATGAAT 58.950 34.615 0.00 0.00 0.00 2.57
2824 2878 7.492669 CACTTAGACAAACTTGAAGAGAGAACA 59.507 37.037 0.00 0.00 0.00 3.18
2932 2986 1.724582 GCAATATGGCCCCGACACAC 61.725 60.000 0.00 0.00 0.00 3.82
2933 2987 1.453015 GCAATATGGCCCCGACACA 60.453 57.895 0.00 0.00 0.00 3.72
2938 2992 2.519063 TGCAGCAATATGGCCCCG 60.519 61.111 0.00 0.00 0.00 5.73
2939 2993 1.456331 AGTGCAGCAATATGGCCCC 60.456 57.895 0.00 0.00 0.00 5.80
2987 3129 9.403583 ACCAAGAAAAGTAAAGTATGAAGACAA 57.596 29.630 0.00 0.00 0.00 3.18
2988 3130 8.974060 ACCAAGAAAAGTAAAGTATGAAGACA 57.026 30.769 0.00 0.00 0.00 3.41
2989 3131 9.052759 TGACCAAGAAAAGTAAAGTATGAAGAC 57.947 33.333 0.00 0.00 0.00 3.01
2990 3132 9.273016 CTGACCAAGAAAAGTAAAGTATGAAGA 57.727 33.333 0.00 0.00 0.00 2.87
2991 3133 9.057089 ACTGACCAAGAAAAGTAAAGTATGAAG 57.943 33.333 0.00 0.00 0.00 3.02
2992 3134 8.974060 ACTGACCAAGAAAAGTAAAGTATGAA 57.026 30.769 0.00 0.00 0.00 2.57
2997 3139 9.281371 GGTTATACTGACCAAGAAAAGTAAAGT 57.719 33.333 0.00 0.00 37.14 2.66
2998 3140 9.503399 AGGTTATACTGACCAAGAAAAGTAAAG 57.497 33.333 0.00 0.00 39.71 1.85
2999 3141 9.280174 CAGGTTATACTGACCAAGAAAAGTAAA 57.720 33.333 0.00 0.00 40.97 2.01
3000 3142 8.434392 ACAGGTTATACTGACCAAGAAAAGTAA 58.566 33.333 0.00 0.00 40.97 2.24
3001 3143 7.970102 ACAGGTTATACTGACCAAGAAAAGTA 58.030 34.615 0.00 0.00 40.97 2.24
3002 3144 6.838382 ACAGGTTATACTGACCAAGAAAAGT 58.162 36.000 0.00 0.00 40.97 2.66
3003 3145 7.745620 AACAGGTTATACTGACCAAGAAAAG 57.254 36.000 0.00 0.00 40.97 2.27
3004 3146 8.528044 AAAACAGGTTATACTGACCAAGAAAA 57.472 30.769 0.00 0.00 40.97 2.29
3005 3147 8.528044 AAAAACAGGTTATACTGACCAAGAAA 57.472 30.769 0.00 0.00 40.97 2.52
3006 3148 9.629878 TTAAAAACAGGTTATACTGACCAAGAA 57.370 29.630 0.00 0.00 40.97 2.52
3007 3149 9.802039 ATTAAAAACAGGTTATACTGACCAAGA 57.198 29.630 0.00 0.00 40.97 3.02
3008 3150 9.840427 CATTAAAAACAGGTTATACTGACCAAG 57.160 33.333 0.00 0.00 40.97 3.61
3009 3151 8.301002 GCATTAAAAACAGGTTATACTGACCAA 58.699 33.333 0.00 0.00 40.97 3.67
3010 3152 7.668052 AGCATTAAAAACAGGTTATACTGACCA 59.332 33.333 0.00 0.00 40.97 4.02
3011 3153 7.968405 CAGCATTAAAAACAGGTTATACTGACC 59.032 37.037 0.00 0.00 40.97 4.02
3012 3154 7.968405 CCAGCATTAAAAACAGGTTATACTGAC 59.032 37.037 0.00 0.00 40.97 3.51
3013 3155 7.668052 ACCAGCATTAAAAACAGGTTATACTGA 59.332 33.333 0.00 0.00 40.97 3.41
3014 3156 7.754924 CACCAGCATTAAAAACAGGTTATACTG 59.245 37.037 0.00 0.00 44.03 2.74
3015 3157 7.450323 ACACCAGCATTAAAAACAGGTTATACT 59.550 33.333 0.00 0.00 0.00 2.12
3016 3158 7.599171 ACACCAGCATTAAAAACAGGTTATAC 58.401 34.615 0.00 0.00 0.00 1.47
3017 3159 7.768807 ACACCAGCATTAAAAACAGGTTATA 57.231 32.000 0.00 0.00 0.00 0.98
3018 3160 6.664428 ACACCAGCATTAAAAACAGGTTAT 57.336 33.333 0.00 0.00 0.00 1.89
3019 3161 6.472686 AACACCAGCATTAAAAACAGGTTA 57.527 33.333 0.00 0.00 0.00 2.85
3020 3162 5.351948 AACACCAGCATTAAAAACAGGTT 57.648 34.783 0.00 0.00 0.00 3.50
3021 3163 5.351948 AAACACCAGCATTAAAAACAGGT 57.648 34.783 0.00 0.00 0.00 4.00
3022 3164 6.458070 CCAAAAACACCAGCATTAAAAACAGG 60.458 38.462 0.00 0.00 0.00 4.00
3023 3165 6.485393 CCAAAAACACCAGCATTAAAAACAG 58.515 36.000 0.00 0.00 0.00 3.16
3024 3166 5.163713 GCCAAAAACACCAGCATTAAAAACA 60.164 36.000 0.00 0.00 0.00 2.83
3025 3167 5.163713 TGCCAAAAACACCAGCATTAAAAAC 60.164 36.000 0.00 0.00 0.00 2.43
3026 3168 4.943705 TGCCAAAAACACCAGCATTAAAAA 59.056 33.333 0.00 0.00 0.00 1.94
3027 3169 4.517285 TGCCAAAAACACCAGCATTAAAA 58.483 34.783 0.00 0.00 0.00 1.52
3028 3170 4.142609 TGCCAAAAACACCAGCATTAAA 57.857 36.364 0.00 0.00 0.00 1.52
3029 3171 3.827008 TGCCAAAAACACCAGCATTAA 57.173 38.095 0.00 0.00 0.00 1.40
3030 3172 3.827008 TTGCCAAAAACACCAGCATTA 57.173 38.095 0.00 0.00 32.67 1.90
3031 3173 2.706339 TTGCCAAAAACACCAGCATT 57.294 40.000 0.00 0.00 32.67 3.56
3032 3174 2.934886 ATTGCCAAAAACACCAGCAT 57.065 40.000 0.00 0.00 32.67 3.79
3033 3175 2.706339 AATTGCCAAAAACACCAGCA 57.294 40.000 0.00 0.00 0.00 4.41
3034 3176 5.451039 CAAATAATTGCCAAAAACACCAGC 58.549 37.500 0.00 0.00 0.00 4.85
3048 3190 7.060174 GCATGCTTTTTCTGTTGCAAATAATTG 59.940 33.333 11.37 0.00 38.96 2.32
3049 3191 7.079475 GCATGCTTTTTCTGTTGCAAATAATT 58.921 30.769 11.37 0.00 38.96 1.40
3050 3192 6.348704 GGCATGCTTTTTCTGTTGCAAATAAT 60.349 34.615 18.92 0.00 38.96 1.28
3051 3193 5.049543 GGCATGCTTTTTCTGTTGCAAATAA 60.050 36.000 18.92 0.00 38.96 1.40
3052 3194 4.451774 GGCATGCTTTTTCTGTTGCAAATA 59.548 37.500 18.92 0.00 38.96 1.40
3053 3195 3.251487 GGCATGCTTTTTCTGTTGCAAAT 59.749 39.130 18.92 0.00 38.96 2.32
3054 3196 2.613133 GGCATGCTTTTTCTGTTGCAAA 59.387 40.909 18.92 0.00 38.96 3.68
3055 3197 2.158928 AGGCATGCTTTTTCTGTTGCAA 60.159 40.909 18.92 0.00 38.96 4.08
3056 3198 1.413445 AGGCATGCTTTTTCTGTTGCA 59.587 42.857 18.92 0.00 39.83 4.08
3057 3199 1.796459 CAGGCATGCTTTTTCTGTTGC 59.204 47.619 18.92 0.00 0.00 4.17
3086 3228 1.550327 AGAGCTCCATCAACGTCAGA 58.450 50.000 10.93 0.00 0.00 3.27
3091 3233 7.721286 ATCTAAATAAAGAGCTCCATCAACG 57.279 36.000 10.93 0.00 0.00 4.10
3092 3234 9.336171 AGAATCTAAATAAAGAGCTCCATCAAC 57.664 33.333 10.93 0.00 0.00 3.18
3094 3236 9.988815 GTAGAATCTAAATAAAGAGCTCCATCA 57.011 33.333 10.93 0.00 0.00 3.07
3210 3352 0.729116 CCTGCACGCAAAGTAGATGG 59.271 55.000 0.00 0.00 0.00 3.51
3218 3360 2.736978 CAATGTAAACCTGCACGCAAA 58.263 42.857 0.00 0.00 0.00 3.68
3238 3380 5.149977 GCGGAGAAAATTATGCAAGATAGC 58.850 41.667 0.00 0.00 0.00 2.97
3239 3381 5.471456 AGGCGGAGAAAATTATGCAAGATAG 59.529 40.000 0.00 0.00 0.00 2.08
3240 3382 5.376625 AGGCGGAGAAAATTATGCAAGATA 58.623 37.500 0.00 0.00 0.00 1.98
3241 3383 4.210331 AGGCGGAGAAAATTATGCAAGAT 58.790 39.130 0.00 0.00 0.00 2.40
3243 3385 4.096984 AGAAGGCGGAGAAAATTATGCAAG 59.903 41.667 0.00 0.00 0.00 4.01
3244 3386 4.016444 AGAAGGCGGAGAAAATTATGCAA 58.984 39.130 0.00 0.00 0.00 4.08
3245 3387 3.620488 AGAAGGCGGAGAAAATTATGCA 58.380 40.909 0.00 0.00 0.00 3.96
3246 3388 4.354587 CAAGAAGGCGGAGAAAATTATGC 58.645 43.478 0.00 0.00 0.00 3.14
3247 3389 4.640201 TCCAAGAAGGCGGAGAAAATTATG 59.360 41.667 0.00 0.00 37.29 1.90
3248 3390 4.855340 TCCAAGAAGGCGGAGAAAATTAT 58.145 39.130 0.00 0.00 37.29 1.28
3249 3391 4.295141 TCCAAGAAGGCGGAGAAAATTA 57.705 40.909 0.00 0.00 37.29 1.40
3250 3392 3.154827 TCCAAGAAGGCGGAGAAAATT 57.845 42.857 0.00 0.00 37.29 1.82
3251 3393 2.879103 TCCAAGAAGGCGGAGAAAAT 57.121 45.000 0.00 0.00 37.29 1.82
3252 3394 2.649531 TTCCAAGAAGGCGGAGAAAA 57.350 45.000 0.00 0.00 37.29 2.29
3253 3395 2.649531 TTTCCAAGAAGGCGGAGAAA 57.350 45.000 0.00 0.00 37.29 2.52
3254 3396 2.879103 ATTTCCAAGAAGGCGGAGAA 57.121 45.000 0.00 0.00 37.29 2.87
3255 3397 2.879103 AATTTCCAAGAAGGCGGAGA 57.121 45.000 0.00 0.00 37.29 3.71
3256 3398 3.942130 AAAATTTCCAAGAAGGCGGAG 57.058 42.857 0.00 0.00 37.29 4.63
3257 3399 3.895041 AGAAAAATTTCCAAGAAGGCGGA 59.105 39.130 2.37 0.00 37.92 5.54
3258 3400 4.021981 AGAGAAAAATTTCCAAGAAGGCGG 60.022 41.667 2.37 0.00 37.92 6.13
3259 3401 4.919754 CAGAGAAAAATTTCCAAGAAGGCG 59.080 41.667 2.37 0.00 37.92 5.52
3265 3407 6.367969 CCATTGAGCAGAGAAAAATTTCCAAG 59.632 38.462 2.37 0.00 37.92 3.61
3268 3410 5.787380 ACCATTGAGCAGAGAAAAATTTCC 58.213 37.500 2.37 0.00 37.92 3.13
3271 3413 6.165700 ACAACCATTGAGCAGAGAAAAATT 57.834 33.333 0.00 0.00 0.00 1.82
3297 3439 5.503927 AGCTGACAAGATGAACATGGTTAT 58.496 37.500 0.00 0.00 0.00 1.89
3341 3483 5.584251 CCTTCTTCATCTTTGGACTCTAAGC 59.416 44.000 0.00 0.00 0.00 3.09
3350 3492 2.220653 TGCCCCTTCTTCATCTTTGG 57.779 50.000 0.00 0.00 0.00 3.28
3459 3603 7.063544 GCCTGTACAAAGAGTGTCAGTAAATAG 59.936 40.741 0.00 0.00 41.98 1.73
3491 3635 7.022055 ACTGAGAATGTACTGAACTATCTCG 57.978 40.000 0.00 0.00 40.47 4.04
3545 3689 0.586319 CAACGGTGTTGAGCATTCGT 59.414 50.000 3.65 0.00 39.90 3.85
3601 3745 3.068448 GCAACATGGTTGGCATATGATCA 59.932 43.478 6.97 0.00 0.00 2.92
3650 3794 7.360101 GCACGGAGCAAACATATAAGGTTATAG 60.360 40.741 0.00 0.00 44.79 1.31
3825 3973 2.669569 GCCTCGACTTGCTTGGCA 60.670 61.111 4.83 0.00 42.79 4.92
3847 3995 3.081061 TCCATCAGTTTGCCATGTGTAC 58.919 45.455 0.00 0.00 0.00 2.90
3852 4000 1.475280 CAGGTCCATCAGTTTGCCATG 59.525 52.381 0.00 0.00 0.00 3.66
3858 4006 1.276421 CTCCGACAGGTCCATCAGTTT 59.724 52.381 0.00 0.00 39.05 2.66
3880 4031 3.316868 TGAACGATTTCAACCAAGGGTTC 59.683 43.478 0.00 0.00 43.05 3.62
3894 4045 4.156556 CACCCACTCATCATTTGAACGATT 59.843 41.667 0.00 0.00 32.78 3.34
3898 4049 3.157087 ACCACCCACTCATCATTTGAAC 58.843 45.455 0.00 0.00 32.78 3.18
3899 4050 3.524095 ACCACCCACTCATCATTTGAA 57.476 42.857 0.00 0.00 32.78 2.69
3902 4053 6.015918 TCATTTTACCACCCACTCATCATTT 58.984 36.000 0.00 0.00 0.00 2.32
3903 4054 5.579047 TCATTTTACCACCCACTCATCATT 58.421 37.500 0.00 0.00 0.00 2.57
3916 4067 9.263446 AGTCTAATACTACCACTCATTTTACCA 57.737 33.333 0.00 0.00 36.36 3.25
3952 4103 2.187958 AGTAGGCAAGCTGTGTATGGA 58.812 47.619 0.00 0.00 0.00 3.41
3953 4104 2.698855 AGTAGGCAAGCTGTGTATGG 57.301 50.000 0.00 0.00 0.00 2.74
3980 4131 5.349817 AGTTCTCATGATAACAGAAACGCAG 59.650 40.000 21.81 0.00 0.00 5.18
3984 4135 8.948631 TCCATAGTTCTCATGATAACAGAAAC 57.051 34.615 21.81 7.64 0.00 2.78
3993 4144 7.443575 GCACATAAACTCCATAGTTCTCATGAT 59.556 37.037 0.00 0.00 45.37 2.45
3997 4148 6.048732 TGCACATAAACTCCATAGTTCTCA 57.951 37.500 0.00 0.00 45.37 3.27
3998 4149 6.341316 TCTGCACATAAACTCCATAGTTCTC 58.659 40.000 0.00 0.00 45.37 2.87
4013 4164 2.532250 TGTCCTCCTCTCTGCACATA 57.468 50.000 0.00 0.00 0.00 2.29
4016 4167 0.177604 CCATGTCCTCCTCTCTGCAC 59.822 60.000 0.00 0.00 0.00 4.57
4036 4187 0.890683 AAAGGGCAAATGGAGAAGCG 59.109 50.000 0.00 0.00 0.00 4.68
4038 4189 4.952335 AGATACAAAGGGCAAATGGAGAAG 59.048 41.667 0.00 0.00 0.00 2.85
4087 4238 6.115446 CAGGGCATAGAGTTCAACTAATTGA 58.885 40.000 0.00 0.00 43.28 2.57
4092 4243 3.107601 AGCAGGGCATAGAGTTCAACTA 58.892 45.455 0.00 0.00 0.00 2.24
4127 4280 1.936547 CTCGCAAGGGTAAGAGCAATC 59.063 52.381 0.00 0.00 38.47 2.67
4129 4282 0.973632 TCTCGCAAGGGTAAGAGCAA 59.026 50.000 0.00 0.00 40.39 3.91
4130 4283 0.973632 TTCTCGCAAGGGTAAGAGCA 59.026 50.000 0.00 0.00 40.39 4.26
4131 4284 1.066787 AGTTCTCGCAAGGGTAAGAGC 60.067 52.381 0.00 0.00 40.39 4.09
4150 4303 7.816640 TGGACGAAATATTTCCTTCTTCAAAG 58.183 34.615 20.01 6.71 33.68 2.77
4208 4361 3.783362 CTCCACCAAACACGCCCCA 62.783 63.158 0.00 0.00 0.00 4.96
4210 4363 2.203294 ACTCCACCAAACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
4233 4386 4.871933 TTCAAGCCTCCTTCAAAATTCC 57.128 40.909 0.00 0.00 0.00 3.01
4276 4429 2.086054 TGTTTTGCCACCAAACACAC 57.914 45.000 0.00 0.00 40.45 3.82
4341 4495 8.710835 TTGCAACGATCTACAATATAAACTGA 57.289 30.769 0.00 0.00 0.00 3.41
4361 4515 2.491298 TCGCTGCCATTTAGAATTGCAA 59.509 40.909 0.00 0.00 0.00 4.08
4372 4526 0.103937 GAGCTCTACTCGCTGCCATT 59.896 55.000 6.43 0.00 37.96 3.16
4395 4549 5.220557 TGCATAGATCAATGACACAAACG 57.779 39.130 0.00 0.00 0.00 3.60
4430 4602 6.648879 AGGCAAAAACATTACTGCTCTTAA 57.351 33.333 0.00 0.00 35.13 1.85
4431 4603 6.040391 ACAAGGCAAAAACATTACTGCTCTTA 59.960 34.615 0.00 0.00 35.13 2.10
4625 4800 9.531942 TCTGTACACTAATAAAAGACGTTTTGA 57.468 29.630 0.00 0.00 36.51 2.69
4626 4801 9.793245 CTCTGTACACTAATAAAAGACGTTTTG 57.207 33.333 0.00 0.00 36.51 2.44
4630 4805 6.435277 TCCCTCTGTACACTAATAAAAGACGT 59.565 38.462 0.00 0.00 0.00 4.34
4631 4806 6.860080 TCCCTCTGTACACTAATAAAAGACG 58.140 40.000 0.00 0.00 0.00 4.18
4632 4807 6.757478 GCTCCCTCTGTACACTAATAAAAGAC 59.243 42.308 0.00 0.00 0.00 3.01
4633 4808 6.439375 TGCTCCCTCTGTACACTAATAAAAGA 59.561 38.462 0.00 0.00 0.00 2.52
4634 4809 6.640518 TGCTCCCTCTGTACACTAATAAAAG 58.359 40.000 0.00 0.00 0.00 2.27
4636 4811 5.955959 TCTGCTCCCTCTGTACACTAATAAA 59.044 40.000 0.00 0.00 0.00 1.40
4637 4812 5.516044 TCTGCTCCCTCTGTACACTAATAA 58.484 41.667 0.00 0.00 0.00 1.40
4638 4813 5.125367 TCTGCTCCCTCTGTACACTAATA 57.875 43.478 0.00 0.00 0.00 0.98
4639 4814 3.982516 TCTGCTCCCTCTGTACACTAAT 58.017 45.455 0.00 0.00 0.00 1.73
4640 4815 3.451402 TCTGCTCCCTCTGTACACTAA 57.549 47.619 0.00 0.00 0.00 2.24
4657 4943 3.021695 AGAATGCCACCACAATCATCTG 58.978 45.455 0.00 0.00 0.00 2.90
4659 4945 2.100252 CCAGAATGCCACCACAATCATC 59.900 50.000 0.00 0.00 31.97 2.92
4679 4965 4.762251 GGTTACCTCATTCCTGATATTGCC 59.238 45.833 0.00 0.00 0.00 4.52
4719 5005 9.495754 GAGATTTTTCTGTTTGATAGCATGTAC 57.504 33.333 0.00 0.00 0.00 2.90
4720 5006 9.230122 TGAGATTTTTCTGTTTGATAGCATGTA 57.770 29.630 0.00 0.00 0.00 2.29
4721 5007 8.114331 TGAGATTTTTCTGTTTGATAGCATGT 57.886 30.769 0.00 0.00 0.00 3.21
4736 5022 5.122396 ACGACATGCTAACCTGAGATTTTTC 59.878 40.000 0.00 0.00 0.00 2.29
4739 5025 4.081420 AGACGACATGCTAACCTGAGATTT 60.081 41.667 0.00 0.00 0.00 2.17
4740 5026 3.449018 AGACGACATGCTAACCTGAGATT 59.551 43.478 0.00 0.00 0.00 2.40
4741 5027 3.027412 AGACGACATGCTAACCTGAGAT 58.973 45.455 0.00 0.00 0.00 2.75
4742 5028 2.423892 GAGACGACATGCTAACCTGAGA 59.576 50.000 0.00 0.00 0.00 3.27
4743 5029 2.164422 TGAGACGACATGCTAACCTGAG 59.836 50.000 0.00 0.00 0.00 3.35
4744 5030 2.167662 TGAGACGACATGCTAACCTGA 58.832 47.619 0.00 0.00 0.00 3.86
4746 5032 3.895232 AATGAGACGACATGCTAACCT 57.105 42.857 0.00 0.00 0.00 3.50
4747 5033 4.933330 TCTAATGAGACGACATGCTAACC 58.067 43.478 0.00 0.00 0.00 2.85
4749 5035 5.301805 TCCATCTAATGAGACGACATGCTAA 59.698 40.000 0.00 0.00 33.41 3.09
4750 5036 4.827284 TCCATCTAATGAGACGACATGCTA 59.173 41.667 0.00 0.00 33.41 3.49
4751 5037 3.638627 TCCATCTAATGAGACGACATGCT 59.361 43.478 0.00 0.00 33.41 3.79
4752 5038 3.982475 TCCATCTAATGAGACGACATGC 58.018 45.455 0.00 0.00 33.41 4.06
4753 5039 4.388165 GCATCCATCTAATGAGACGACATG 59.612 45.833 0.00 0.00 33.41 3.21
4754 5040 4.282957 AGCATCCATCTAATGAGACGACAT 59.717 41.667 0.00 0.00 33.41 3.06
4755 5041 3.638627 AGCATCCATCTAATGAGACGACA 59.361 43.478 0.00 0.00 33.41 4.35
4756 5042 4.250116 AGCATCCATCTAATGAGACGAC 57.750 45.455 0.00 0.00 33.41 4.34
4757 5043 5.073428 AGTAGCATCCATCTAATGAGACGA 58.927 41.667 0.00 0.00 33.41 4.20
4758 5044 5.384063 AGTAGCATCCATCTAATGAGACG 57.616 43.478 0.00 0.00 33.41 4.18
4759 5045 7.220741 TGTAGTAGCATCCATCTAATGAGAC 57.779 40.000 0.00 0.00 33.41 3.36
4760 5046 9.533831 TTATGTAGTAGCATCCATCTAATGAGA 57.466 33.333 0.00 0.00 35.71 3.27
4767 5053 9.094578 ACAGTATTTATGTAGTAGCATCCATCT 57.905 33.333 0.00 0.00 0.00 2.90
4784 5070 7.255590 GCCCGAGTACATACCTTACAGTATTTA 60.256 40.741 0.00 0.00 30.38 1.40
4785 5071 6.462067 GCCCGAGTACATACCTTACAGTATTT 60.462 42.308 0.00 0.00 30.38 1.40
4789 5075 2.692041 GCCCGAGTACATACCTTACAGT 59.308 50.000 0.00 0.00 0.00 3.55
4790 5076 2.691526 TGCCCGAGTACATACCTTACAG 59.308 50.000 0.00 0.00 0.00 2.74
4791 5077 2.737544 TGCCCGAGTACATACCTTACA 58.262 47.619 0.00 0.00 0.00 2.41
4792 5078 3.069158 ACATGCCCGAGTACATACCTTAC 59.931 47.826 0.00 0.00 0.00 2.34
4793 5079 3.302161 ACATGCCCGAGTACATACCTTA 58.698 45.455 0.00 0.00 0.00 2.69
4794 5080 2.102588 GACATGCCCGAGTACATACCTT 59.897 50.000 0.00 0.00 0.00 3.50
4826 5112 1.605712 CCTTGTTCTCCACCGAGACAC 60.606 57.143 0.00 0.00 45.01 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.