Multiple sequence alignment - TraesCS4A01G409900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G409900 chr4A 100.000 4193 0 0 1 4193 683260046 683255854 0.000000e+00 7744.0
1 TraesCS4A01G409900 chr4A 89.792 2263 205 17 1018 3272 682992239 682989995 0.000000e+00 2876.0
2 TraesCS4A01G409900 chr4A 93.696 460 21 8 4 459 679188238 679187783 0.000000e+00 682.0
3 TraesCS4A01G409900 chr4B 91.501 2812 131 50 678 3423 600433583 600430814 0.000000e+00 3770.0
4 TraesCS4A01G409900 chr4B 88.311 2344 243 15 1018 3346 600376383 600378710 0.000000e+00 2782.0
5 TraesCS4A01G409900 chr4B 80.882 136 21 3 717 850 600370456 600370588 7.420000e-18 102.0
6 TraesCS4A01G409900 chr4D 93.694 2474 118 21 944 3394 476199512 476197054 0.000000e+00 3670.0
7 TraesCS4A01G409900 chr4D 87.848 2263 239 21 1018 3272 475954545 475952311 0.000000e+00 2623.0
8 TraesCS4A01G409900 chr4D 91.486 740 59 2 3455 4193 392726017 392725281 0.000000e+00 1014.0
9 TraesCS4A01G409900 chr4D 81.013 79 13 1 726 804 475963922 475963846 1.260000e-05 62.1
10 TraesCS4A01G409900 chr7D 92.568 740 47 5 3456 4193 576645031 576644298 0.000000e+00 1055.0
11 TraesCS4A01G409900 chr7D 92.194 743 51 6 3455 4193 145920049 145919310 0.000000e+00 1044.0
12 TraesCS4A01G409900 chr7D 91.610 739 55 4 3455 4191 616465906 616465173 0.000000e+00 1014.0
13 TraesCS4A01G409900 chr2D 92.318 742 50 6 3456 4193 276936748 276936010 0.000000e+00 1048.0
14 TraesCS4A01G409900 chr2D 92.000 750 55 4 3445 4193 285349003 285349748 0.000000e+00 1048.0
15 TraesCS4A01G409900 chr2D 91.689 734 56 4 3453 4184 534728113 534727383 0.000000e+00 1013.0
16 TraesCS4A01G409900 chr5B 78.558 1637 315 30 1155 2763 420011835 420013463 0.000000e+00 1046.0
17 TraesCS4A01G409900 chr1D 91.803 732 51 7 3454 4184 444890194 444890917 0.000000e+00 1011.0
18 TraesCS4A01G409900 chr5A 91.363 741 59 5 3454 4193 598827522 598826786 0.000000e+00 1009.0
19 TraesCS4A01G409900 chr5A 77.978 1612 319 29 1135 2724 413220299 413221896 0.000000e+00 977.0
20 TraesCS4A01G409900 chr5A 95.435 460 14 6 1 455 616922192 616922649 0.000000e+00 726.0
21 TraesCS4A01G409900 chr5A 95.937 443 11 7 20 459 37625454 37625016 0.000000e+00 712.0
22 TraesCS4A01G409900 chr5A 95.034 443 13 6 20 459 493017828 493017392 0.000000e+00 688.0
23 TraesCS4A01G409900 chr6A 95.914 465 13 6 1 462 82102282 82101821 0.000000e+00 749.0
24 TraesCS4A01G409900 chr6A 93.869 473 19 7 1 470 66644373 66643908 0.000000e+00 704.0
25 TraesCS4A01G409900 chr6A 93.913 460 18 7 1 455 3204561 3205015 0.000000e+00 686.0
26 TraesCS4A01G409900 chr6A 93.737 463 20 9 1 460 524369258 524369714 0.000000e+00 686.0
27 TraesCS4A01G409900 chr6A 81.915 188 32 2 1192 1378 563730108 563729922 1.560000e-34 158.0
28 TraesCS4A01G409900 chr3A 93.723 462 22 7 1 460 44586665 44586209 0.000000e+00 686.0
29 TraesCS4A01G409900 chr6B 81.915 188 32 2 1192 1378 634044189 634044375 1.560000e-34 158.0
30 TraesCS4A01G409900 chr6D 78.571 210 43 2 1170 1378 420758363 420758571 2.030000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G409900 chr4A 683255854 683260046 4192 True 7744 7744 100.000 1 4193 1 chr4A.!!$R3 4192
1 TraesCS4A01G409900 chr4A 682989995 682992239 2244 True 2876 2876 89.792 1018 3272 1 chr4A.!!$R2 2254
2 TraesCS4A01G409900 chr4B 600430814 600433583 2769 True 3770 3770 91.501 678 3423 1 chr4B.!!$R1 2745
3 TraesCS4A01G409900 chr4B 600376383 600378710 2327 False 2782 2782 88.311 1018 3346 1 chr4B.!!$F2 2328
4 TraesCS4A01G409900 chr4D 476197054 476199512 2458 True 3670 3670 93.694 944 3394 1 chr4D.!!$R4 2450
5 TraesCS4A01G409900 chr4D 475952311 475954545 2234 True 2623 2623 87.848 1018 3272 1 chr4D.!!$R2 2254
6 TraesCS4A01G409900 chr4D 392725281 392726017 736 True 1014 1014 91.486 3455 4193 1 chr4D.!!$R1 738
7 TraesCS4A01G409900 chr7D 576644298 576645031 733 True 1055 1055 92.568 3456 4193 1 chr7D.!!$R2 737
8 TraesCS4A01G409900 chr7D 145919310 145920049 739 True 1044 1044 92.194 3455 4193 1 chr7D.!!$R1 738
9 TraesCS4A01G409900 chr7D 616465173 616465906 733 True 1014 1014 91.610 3455 4191 1 chr7D.!!$R3 736
10 TraesCS4A01G409900 chr2D 276936010 276936748 738 True 1048 1048 92.318 3456 4193 1 chr2D.!!$R1 737
11 TraesCS4A01G409900 chr2D 285349003 285349748 745 False 1048 1048 92.000 3445 4193 1 chr2D.!!$F1 748
12 TraesCS4A01G409900 chr2D 534727383 534728113 730 True 1013 1013 91.689 3453 4184 1 chr2D.!!$R2 731
13 TraesCS4A01G409900 chr5B 420011835 420013463 1628 False 1046 1046 78.558 1155 2763 1 chr5B.!!$F1 1608
14 TraesCS4A01G409900 chr1D 444890194 444890917 723 False 1011 1011 91.803 3454 4184 1 chr1D.!!$F1 730
15 TraesCS4A01G409900 chr5A 598826786 598827522 736 True 1009 1009 91.363 3454 4193 1 chr5A.!!$R3 739
16 TraesCS4A01G409900 chr5A 413220299 413221896 1597 False 977 977 77.978 1135 2724 1 chr5A.!!$F1 1589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 884 0.030235 CCTCACATGCATGCATTCCG 59.970 55.000 30.32 21.00 33.90 4.30 F
940 970 0.033366 CCACACATCACACTCGACCA 59.967 55.000 0.00 0.00 0.00 4.02 F
957 987 1.475280 ACCAGTGCATGCAATCATCAC 59.525 47.619 24.58 8.13 34.19 3.06 F
2597 2683 1.136502 CGAGAACAAGAAGAACTGCGC 60.137 52.381 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2136 0.452184 GGATGTTGAGCTCGTCGAGA 59.548 55.0 26.11 3.89 0.00 4.04 R
2568 2654 0.541998 TCTTGTTCTCGAGGGCCAGA 60.542 55.0 13.56 9.35 0.00 3.86 R
2633 2719 1.020861 ATTCAGCGCATCAACGAGCA 61.021 50.0 11.47 0.00 33.67 4.26 R
3480 3596 0.541863 CAGCAGACCCCTTAACGGAT 59.458 55.0 0.00 0.00 33.16 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 6.533730 GGAATTTGAAATTTTTCCCTGGAGT 58.466 36.000 4.46 0.00 36.36 3.85
124 125 6.998074 GGAATTTGAAATTTTTCCCTGGAGTT 59.002 34.615 4.46 0.00 36.36 3.01
125 126 7.502226 GGAATTTGAAATTTTTCCCTGGAGTTT 59.498 33.333 4.46 0.00 36.36 2.66
126 127 8.821686 AATTTGAAATTTTTCCCTGGAGTTTT 57.178 26.923 0.00 0.00 36.36 2.43
127 128 8.821686 ATTTGAAATTTTTCCCTGGAGTTTTT 57.178 26.923 0.00 0.00 36.36 1.94
191 192 9.250624 TGATAATTTTGTTTTTCGGAAATTCGT 57.749 25.926 3.67 0.00 34.56 3.85
195 196 9.613957 AATTTTGTTTTTCGGAAATTCGTTTTT 57.386 22.222 3.67 0.00 28.50 1.94
297 298 3.566273 TTTTTGCTGACGTGGCATG 57.434 47.368 12.56 4.87 39.54 4.06
298 299 0.597118 TTTTTGCTGACGTGGCATGC 60.597 50.000 9.90 9.90 39.54 4.06
299 300 1.454572 TTTTGCTGACGTGGCATGCT 61.455 50.000 18.92 0.00 39.54 3.79
300 301 2.132517 TTTGCTGACGTGGCATGCTG 62.133 55.000 18.92 10.47 39.54 4.41
301 302 2.743538 GCTGACGTGGCATGCTGA 60.744 61.111 18.92 1.21 0.00 4.26
302 303 3.031964 GCTGACGTGGCATGCTGAC 62.032 63.158 18.92 13.47 0.00 3.51
303 304 1.375140 CTGACGTGGCATGCTGACT 60.375 57.895 18.92 5.08 0.00 3.41
304 305 1.632948 CTGACGTGGCATGCTGACTG 61.633 60.000 18.92 12.56 0.00 3.51
305 306 2.359107 ACGTGGCATGCTGACTGG 60.359 61.111 18.92 5.81 0.00 4.00
306 307 2.046988 CGTGGCATGCTGACTGGA 60.047 61.111 18.92 0.00 0.00 3.86
307 308 2.393768 CGTGGCATGCTGACTGGAC 61.394 63.158 18.92 0.00 0.00 4.02
308 309 2.042831 GTGGCATGCTGACTGGACC 61.043 63.158 18.92 0.00 0.00 4.46
309 310 2.226315 TGGCATGCTGACTGGACCT 61.226 57.895 18.92 0.00 0.00 3.85
310 311 1.748122 GGCATGCTGACTGGACCTG 60.748 63.158 18.92 0.00 0.00 4.00
311 312 2.404995 GCATGCTGACTGGACCTGC 61.405 63.158 11.37 0.00 0.00 4.85
312 313 1.298993 CATGCTGACTGGACCTGCT 59.701 57.895 0.00 0.00 0.00 4.24
313 314 1.025113 CATGCTGACTGGACCTGCTG 61.025 60.000 0.00 0.00 0.00 4.41
314 315 1.196766 ATGCTGACTGGACCTGCTGA 61.197 55.000 0.00 0.00 0.00 4.26
315 316 1.375268 GCTGACTGGACCTGCTGAC 60.375 63.158 0.00 0.00 0.00 3.51
316 317 1.825281 GCTGACTGGACCTGCTGACT 61.825 60.000 0.00 0.00 0.00 3.41
317 318 0.037512 CTGACTGGACCTGCTGACTG 60.038 60.000 0.00 0.00 0.00 3.51
318 319 1.294780 GACTGGACCTGCTGACTGG 59.705 63.158 0.00 0.00 40.61 4.00
325 326 1.680338 ACCTGCTGACTGGTCAAAAC 58.320 50.000 4.94 0.00 44.19 2.43
326 327 0.954452 CCTGCTGACTGGTCAAAACC 59.046 55.000 4.94 0.00 46.66 3.27
336 337 1.670791 GGTCAAAACCGGTCAACAGA 58.329 50.000 8.04 0.00 35.36 3.41
337 338 1.602377 GGTCAAAACCGGTCAACAGAG 59.398 52.381 8.04 0.00 35.36 3.35
338 339 2.557317 GTCAAAACCGGTCAACAGAGA 58.443 47.619 8.04 0.00 0.00 3.10
339 340 2.544267 GTCAAAACCGGTCAACAGAGAG 59.456 50.000 8.04 0.00 0.00 3.20
340 341 1.873591 CAAAACCGGTCAACAGAGAGG 59.126 52.381 8.04 0.00 0.00 3.69
341 342 1.420430 AAACCGGTCAACAGAGAGGA 58.580 50.000 8.04 0.00 0.00 3.71
342 343 0.969894 AACCGGTCAACAGAGAGGAG 59.030 55.000 8.04 0.00 0.00 3.69
343 344 0.112606 ACCGGTCAACAGAGAGGAGA 59.887 55.000 0.00 0.00 0.00 3.71
344 345 0.814457 CCGGTCAACAGAGAGGAGAG 59.186 60.000 0.00 0.00 0.00 3.20
345 346 0.814457 CGGTCAACAGAGAGGAGAGG 59.186 60.000 0.00 0.00 0.00 3.69
346 347 1.190643 GGTCAACAGAGAGGAGAGGG 58.809 60.000 0.00 0.00 0.00 4.30
347 348 1.551329 GGTCAACAGAGAGGAGAGGGT 60.551 57.143 0.00 0.00 0.00 4.34
348 349 2.252714 GTCAACAGAGAGGAGAGGGTT 58.747 52.381 0.00 0.00 0.00 4.11
349 350 2.028567 GTCAACAGAGAGGAGAGGGTTG 60.029 54.545 0.00 0.00 37.53 3.77
350 351 2.158310 TCAACAGAGAGGAGAGGGTTGA 60.158 50.000 0.00 0.00 41.40 3.18
351 352 2.634940 CAACAGAGAGGAGAGGGTTGAA 59.365 50.000 0.00 0.00 38.22 2.69
352 353 3.197927 ACAGAGAGGAGAGGGTTGAAT 57.802 47.619 0.00 0.00 0.00 2.57
353 354 3.103742 ACAGAGAGGAGAGGGTTGAATC 58.896 50.000 0.00 0.00 0.00 2.52
354 355 2.433970 CAGAGAGGAGAGGGTTGAATCC 59.566 54.545 0.00 0.00 0.00 3.01
355 356 2.317594 AGAGAGGAGAGGGTTGAATCCT 59.682 50.000 0.00 0.00 44.90 3.24
356 357 3.533907 AGAGAGGAGAGGGTTGAATCCTA 59.466 47.826 0.00 0.00 42.27 2.94
357 358 3.895041 GAGAGGAGAGGGTTGAATCCTAG 59.105 52.174 0.00 0.00 42.27 3.02
358 359 2.367241 GAGGAGAGGGTTGAATCCTAGC 59.633 54.545 0.00 0.00 42.27 3.42
359 360 1.418264 GGAGAGGGTTGAATCCTAGCC 59.582 57.143 0.00 0.00 34.21 3.93
360 361 1.069358 GAGAGGGTTGAATCCTAGCCG 59.931 57.143 0.00 0.00 39.95 5.52
361 362 0.106894 GAGGGTTGAATCCTAGCCGG 59.893 60.000 0.00 0.00 39.95 6.13
362 363 0.620700 AGGGTTGAATCCTAGCCGGT 60.621 55.000 1.90 0.00 39.95 5.28
363 364 0.255033 GGGTTGAATCCTAGCCGGTT 59.745 55.000 1.90 0.00 0.00 4.44
364 365 1.340697 GGGTTGAATCCTAGCCGGTTT 60.341 52.381 1.90 0.00 0.00 3.27
365 366 2.443416 GGTTGAATCCTAGCCGGTTTT 58.557 47.619 1.90 0.00 0.00 2.43
366 367 2.163613 GGTTGAATCCTAGCCGGTTTTG 59.836 50.000 1.90 0.00 0.00 2.44
367 368 3.078837 GTTGAATCCTAGCCGGTTTTGA 58.921 45.455 1.90 0.00 0.00 2.69
368 369 2.985896 TGAATCCTAGCCGGTTTTGAG 58.014 47.619 1.90 0.00 0.00 3.02
369 370 2.569853 TGAATCCTAGCCGGTTTTGAGA 59.430 45.455 1.90 0.00 0.00 3.27
370 371 2.990066 ATCCTAGCCGGTTTTGAGAG 57.010 50.000 1.90 0.00 0.00 3.20
371 372 1.640917 TCCTAGCCGGTTTTGAGAGT 58.359 50.000 1.90 0.00 0.00 3.24
372 373 1.975680 TCCTAGCCGGTTTTGAGAGTT 59.024 47.619 1.90 0.00 0.00 3.01
373 374 2.076863 CCTAGCCGGTTTTGAGAGTTG 58.923 52.381 1.90 0.00 0.00 3.16
374 375 2.076863 CTAGCCGGTTTTGAGAGTTGG 58.923 52.381 1.90 0.00 0.00 3.77
375 376 0.537371 AGCCGGTTTTGAGAGTTGGG 60.537 55.000 1.90 0.00 0.00 4.12
376 377 1.524008 GCCGGTTTTGAGAGTTGGGG 61.524 60.000 1.90 0.00 0.00 4.96
377 378 0.893727 CCGGTTTTGAGAGTTGGGGG 60.894 60.000 0.00 0.00 0.00 5.40
378 379 0.179001 CGGTTTTGAGAGTTGGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
379 380 1.752788 CGGTTTTGAGAGTTGGGGGTT 60.753 52.381 0.00 0.00 0.00 4.11
380 381 1.686587 GGTTTTGAGAGTTGGGGGTTG 59.313 52.381 0.00 0.00 0.00 3.77
381 382 2.384828 GTTTTGAGAGTTGGGGGTTGT 58.615 47.619 0.00 0.00 0.00 3.32
382 383 3.558033 GTTTTGAGAGTTGGGGGTTGTA 58.442 45.455 0.00 0.00 0.00 2.41
383 384 3.955524 TTTGAGAGTTGGGGGTTGTAA 57.044 42.857 0.00 0.00 0.00 2.41
384 385 4.463050 TTTGAGAGTTGGGGGTTGTAAT 57.537 40.909 0.00 0.00 0.00 1.89
385 386 4.463050 TTGAGAGTTGGGGGTTGTAATT 57.537 40.909 0.00 0.00 0.00 1.40
386 387 4.463050 TGAGAGTTGGGGGTTGTAATTT 57.537 40.909 0.00 0.00 0.00 1.82
387 388 5.586155 TGAGAGTTGGGGGTTGTAATTTA 57.414 39.130 0.00 0.00 0.00 1.40
388 389 5.566469 TGAGAGTTGGGGGTTGTAATTTAG 58.434 41.667 0.00 0.00 0.00 1.85
389 390 5.311121 TGAGAGTTGGGGGTTGTAATTTAGA 59.689 40.000 0.00 0.00 0.00 2.10
390 391 5.567430 AGAGTTGGGGGTTGTAATTTAGAC 58.433 41.667 0.00 0.00 0.00 2.59
391 392 4.329392 AGTTGGGGGTTGTAATTTAGACG 58.671 43.478 0.00 0.00 0.00 4.18
392 393 2.713877 TGGGGGTTGTAATTTAGACGC 58.286 47.619 0.00 0.00 0.00 5.19
393 394 2.019249 GGGGGTTGTAATTTAGACGCC 58.981 52.381 13.43 13.43 42.46 5.68
394 395 2.618559 GGGGGTTGTAATTTAGACGCCA 60.619 50.000 19.18 0.00 44.29 5.69
395 396 3.284617 GGGGTTGTAATTTAGACGCCAT 58.715 45.455 15.48 0.00 42.66 4.40
396 397 3.697542 GGGGTTGTAATTTAGACGCCATT 59.302 43.478 15.48 0.00 42.66 3.16
397 398 4.439563 GGGGTTGTAATTTAGACGCCATTG 60.440 45.833 15.48 0.00 42.66 2.82
398 399 4.439563 GGGTTGTAATTTAGACGCCATTGG 60.440 45.833 0.00 0.00 0.00 3.16
399 400 4.396790 GGTTGTAATTTAGACGCCATTGGA 59.603 41.667 6.95 0.00 0.00 3.53
400 401 5.448632 GGTTGTAATTTAGACGCCATTGGAG 60.449 44.000 6.95 5.76 0.00 3.86
401 402 4.839121 TGTAATTTAGACGCCATTGGAGT 58.161 39.130 12.23 12.23 38.71 3.85
402 403 5.250200 TGTAATTTAGACGCCATTGGAGTT 58.750 37.500 13.60 6.53 35.49 3.01
403 404 5.708230 TGTAATTTAGACGCCATTGGAGTTT 59.292 36.000 13.60 10.48 35.49 2.66
404 405 4.701956 ATTTAGACGCCATTGGAGTTTG 57.298 40.909 13.60 0.00 35.49 2.93
405 406 2.107950 TAGACGCCATTGGAGTTTGG 57.892 50.000 13.60 0.00 35.49 3.28
406 407 0.400213 AGACGCCATTGGAGTTTGGA 59.600 50.000 13.60 0.00 35.49 3.53
407 408 0.804989 GACGCCATTGGAGTTTGGAG 59.195 55.000 13.60 0.00 35.49 3.86
408 409 0.110486 ACGCCATTGGAGTTTGGAGT 59.890 50.000 6.95 0.00 40.61 3.85
409 410 1.247567 CGCCATTGGAGTTTGGAGTT 58.752 50.000 6.95 0.00 34.81 3.01
410 411 1.068333 CGCCATTGGAGTTTGGAGTTG 60.068 52.381 6.95 0.00 34.81 3.16
411 412 1.963515 GCCATTGGAGTTTGGAGTTGT 59.036 47.619 6.95 0.00 34.81 3.32
412 413 3.153919 GCCATTGGAGTTTGGAGTTGTA 58.846 45.455 6.95 0.00 34.81 2.41
413 414 3.572255 GCCATTGGAGTTTGGAGTTGTAA 59.428 43.478 6.95 0.00 34.81 2.41
414 415 4.038642 GCCATTGGAGTTTGGAGTTGTAAA 59.961 41.667 6.95 0.00 34.81 2.01
415 416 5.279456 GCCATTGGAGTTTGGAGTTGTAAAT 60.279 40.000 6.95 0.00 34.81 1.40
416 417 6.741240 GCCATTGGAGTTTGGAGTTGTAAATT 60.741 38.462 6.95 0.00 34.81 1.82
417 418 7.524698 GCCATTGGAGTTTGGAGTTGTAAATTA 60.525 37.037 6.95 0.00 34.81 1.40
418 419 8.028938 CCATTGGAGTTTGGAGTTGTAAATTAG 58.971 37.037 0.00 0.00 34.81 1.73
419 420 8.792633 CATTGGAGTTTGGAGTTGTAAATTAGA 58.207 33.333 0.00 0.00 0.00 2.10
420 421 7.739498 TGGAGTTTGGAGTTGTAAATTAGAC 57.261 36.000 0.00 0.00 0.00 2.59
421 422 6.713450 TGGAGTTTGGAGTTGTAAATTAGACC 59.287 38.462 0.00 0.00 0.00 3.85
422 423 6.713450 GGAGTTTGGAGTTGTAAATTAGACCA 59.287 38.462 0.00 0.00 0.00 4.02
423 424 7.094762 GGAGTTTGGAGTTGTAAATTAGACCAG 60.095 40.741 0.00 0.00 0.00 4.00
424 425 6.715264 AGTTTGGAGTTGTAAATTAGACCAGG 59.285 38.462 0.00 0.00 0.00 4.45
425 426 4.585879 TGGAGTTGTAAATTAGACCAGGC 58.414 43.478 0.00 0.00 0.00 4.85
426 427 4.042311 TGGAGTTGTAAATTAGACCAGGCA 59.958 41.667 0.00 0.00 0.00 4.75
427 428 5.007682 GGAGTTGTAAATTAGACCAGGCAA 58.992 41.667 0.00 0.00 0.00 4.52
428 429 5.123979 GGAGTTGTAAATTAGACCAGGCAAG 59.876 44.000 0.00 0.00 0.00 4.01
429 430 5.876357 AGTTGTAAATTAGACCAGGCAAGA 58.124 37.500 0.00 0.00 0.00 3.02
430 431 5.940470 AGTTGTAAATTAGACCAGGCAAGAG 59.060 40.000 0.00 0.00 0.00 2.85
431 432 5.499004 TGTAAATTAGACCAGGCAAGAGT 57.501 39.130 0.00 0.00 0.00 3.24
432 433 5.876357 TGTAAATTAGACCAGGCAAGAGTT 58.124 37.500 0.00 0.00 0.00 3.01
433 434 5.938125 TGTAAATTAGACCAGGCAAGAGTTC 59.062 40.000 0.00 0.00 0.00 3.01
434 435 2.743636 TTAGACCAGGCAAGAGTTCG 57.256 50.000 0.00 0.00 0.00 3.95
435 436 0.895530 TAGACCAGGCAAGAGTTCGG 59.104 55.000 0.00 0.00 0.00 4.30
436 437 1.376037 GACCAGGCAAGAGTTCGGG 60.376 63.158 0.00 0.00 0.00 5.14
437 438 2.045926 CCAGGCAAGAGTTCGGGG 60.046 66.667 0.00 0.00 0.00 5.73
438 439 2.750350 CAGGCAAGAGTTCGGGGT 59.250 61.111 0.00 0.00 0.00 4.95
439 440 1.073199 CAGGCAAGAGTTCGGGGTT 59.927 57.895 0.00 0.00 0.00 4.11
440 441 1.073199 AGGCAAGAGTTCGGGGTTG 59.927 57.895 0.00 0.00 0.00 3.77
441 442 1.072505 GGCAAGAGTTCGGGGTTGA 59.927 57.895 0.00 0.00 0.00 3.18
442 443 0.536460 GGCAAGAGTTCGGGGTTGAA 60.536 55.000 0.00 0.00 0.00 2.69
443 444 1.314730 GCAAGAGTTCGGGGTTGAAA 58.685 50.000 0.00 0.00 0.00 2.69
444 445 1.886542 GCAAGAGTTCGGGGTTGAAAT 59.113 47.619 0.00 0.00 0.00 2.17
445 446 3.078837 GCAAGAGTTCGGGGTTGAAATA 58.921 45.455 0.00 0.00 0.00 1.40
446 447 3.694566 GCAAGAGTTCGGGGTTGAAATAT 59.305 43.478 0.00 0.00 0.00 1.28
447 448 4.438744 GCAAGAGTTCGGGGTTGAAATATG 60.439 45.833 0.00 0.00 0.00 1.78
448 449 3.279434 AGAGTTCGGGGTTGAAATATGC 58.721 45.455 0.00 0.00 0.00 3.14
449 450 3.013921 GAGTTCGGGGTTGAAATATGCA 58.986 45.455 0.00 0.00 0.00 3.96
450 451 2.752903 AGTTCGGGGTTGAAATATGCAC 59.247 45.455 0.00 0.00 0.00 4.57
451 452 2.752903 GTTCGGGGTTGAAATATGCACT 59.247 45.455 0.00 0.00 0.00 4.40
452 453 3.080300 TCGGGGTTGAAATATGCACTT 57.920 42.857 0.00 0.00 0.00 3.16
453 454 3.013921 TCGGGGTTGAAATATGCACTTC 58.986 45.455 0.00 0.00 0.00 3.01
454 455 3.016736 CGGGGTTGAAATATGCACTTCT 58.983 45.455 0.00 0.00 0.00 2.85
455 456 3.443681 CGGGGTTGAAATATGCACTTCTT 59.556 43.478 0.00 0.00 0.00 2.52
456 457 4.082245 CGGGGTTGAAATATGCACTTCTTT 60.082 41.667 0.00 0.00 0.00 2.52
457 458 5.410924 GGGGTTGAAATATGCACTTCTTTC 58.589 41.667 0.00 0.00 0.00 2.62
458 459 5.185828 GGGGTTGAAATATGCACTTCTTTCT 59.814 40.000 0.00 0.00 0.00 2.52
459 460 6.295292 GGGGTTGAAATATGCACTTCTTTCTT 60.295 38.462 0.00 0.00 0.00 2.52
460 461 6.808704 GGGTTGAAATATGCACTTCTTTCTTC 59.191 38.462 0.00 0.00 0.00 2.87
461 462 7.309438 GGGTTGAAATATGCACTTCTTTCTTCT 60.309 37.037 0.00 0.00 0.00 2.85
462 463 7.540055 GGTTGAAATATGCACTTCTTTCTTCTG 59.460 37.037 0.00 0.00 0.00 3.02
463 464 7.984422 TGAAATATGCACTTCTTTCTTCTGA 57.016 32.000 0.00 0.00 0.00 3.27
464 465 8.394971 TGAAATATGCACTTCTTTCTTCTGAA 57.605 30.769 0.00 0.00 0.00 3.02
465 466 8.849168 TGAAATATGCACTTCTTTCTTCTGAAA 58.151 29.630 0.00 0.00 39.59 2.69
466 467 9.852091 GAAATATGCACTTCTTTCTTCTGAAAT 57.148 29.630 0.00 0.00 40.85 2.17
467 468 9.852091 AAATATGCACTTCTTTCTTCTGAAATC 57.148 29.630 0.00 0.00 40.85 2.17
468 469 6.889301 ATGCACTTCTTTCTTCTGAAATCA 57.111 33.333 0.00 0.00 40.85 2.57
469 470 6.698008 TGCACTTCTTTCTTCTGAAATCAA 57.302 33.333 0.00 0.00 40.85 2.57
470 471 6.498304 TGCACTTCTTTCTTCTGAAATCAAC 58.502 36.000 0.00 0.00 40.85 3.18
471 472 6.095300 TGCACTTCTTTCTTCTGAAATCAACA 59.905 34.615 0.00 0.00 40.85 3.33
472 473 6.974622 GCACTTCTTTCTTCTGAAATCAACAA 59.025 34.615 0.00 0.00 40.85 2.83
473 474 7.489113 GCACTTCTTTCTTCTGAAATCAACAAA 59.511 33.333 0.00 0.00 40.85 2.83
474 475 9.525409 CACTTCTTTCTTCTGAAATCAACAAAT 57.475 29.630 0.00 0.00 40.85 2.32
475 476 9.525409 ACTTCTTTCTTCTGAAATCAACAAATG 57.475 29.630 0.00 0.00 40.85 2.32
476 477 9.740239 CTTCTTTCTTCTGAAATCAACAAATGA 57.260 29.630 0.00 0.00 40.85 2.57
477 478 9.520204 TTCTTTCTTCTGAAATCAACAAATGAC 57.480 29.630 0.00 0.00 41.93 3.06
478 479 7.857389 TCTTTCTTCTGAAATCAACAAATGACG 59.143 33.333 0.00 0.00 41.93 4.35
479 480 6.859420 TCTTCTGAAATCAACAAATGACGA 57.141 33.333 0.00 0.00 41.93 4.20
480 481 7.258022 TCTTCTGAAATCAACAAATGACGAA 57.742 32.000 0.00 0.00 41.93 3.85
481 482 7.702386 TCTTCTGAAATCAACAAATGACGAAA 58.298 30.769 0.00 0.00 41.93 3.46
482 483 8.352201 TCTTCTGAAATCAACAAATGACGAAAT 58.648 29.630 0.00 0.00 41.93 2.17
483 484 9.611284 CTTCTGAAATCAACAAATGACGAAATA 57.389 29.630 0.00 0.00 41.93 1.40
484 485 8.948853 TCTGAAATCAACAAATGACGAAATAC 57.051 30.769 0.00 0.00 41.93 1.89
485 486 8.563732 TCTGAAATCAACAAATGACGAAATACA 58.436 29.630 0.00 0.00 41.93 2.29
486 487 9.179552 CTGAAATCAACAAATGACGAAATACAA 57.820 29.630 0.00 0.00 41.93 2.41
487 488 9.689976 TGAAATCAACAAATGACGAAATACAAT 57.310 25.926 0.00 0.00 41.93 2.71
490 491 9.689976 AATCAACAAATGACGAAATACAATTCA 57.310 25.926 0.00 0.00 41.93 2.57
491 492 9.689976 ATCAACAAATGACGAAATACAATTCAA 57.310 25.926 0.00 0.00 41.93 2.69
492 493 9.521503 TCAACAAATGACGAAATACAATTCAAA 57.478 25.926 0.00 0.00 31.50 2.69
506 507 9.941325 AATACAATTCAAAATTTATCTGTGGCA 57.059 25.926 0.00 0.00 0.00 4.92
507 508 9.941325 ATACAATTCAAAATTTATCTGTGGCAA 57.059 25.926 0.00 0.00 0.00 4.52
508 509 8.674263 ACAATTCAAAATTTATCTGTGGCAAA 57.326 26.923 0.00 0.00 0.00 3.68
509 510 9.118300 ACAATTCAAAATTTATCTGTGGCAAAA 57.882 25.926 0.00 0.00 0.00 2.44
514 515 9.334947 TCAAAATTTATCTGTGGCAAAATTTCA 57.665 25.926 15.89 7.07 39.40 2.69
515 516 9.384682 CAAAATTTATCTGTGGCAAAATTTCAC 57.615 29.630 15.89 0.00 39.40 3.18
516 517 8.674263 AAATTTATCTGTGGCAAAATTTCACA 57.326 26.923 11.75 9.93 37.06 3.58
517 518 8.851541 AATTTATCTGTGGCAAAATTTCACAT 57.148 26.923 10.57 2.15 40.11 3.21
518 519 9.941325 AATTTATCTGTGGCAAAATTTCACATA 57.059 25.926 10.57 5.64 40.11 2.29
519 520 9.941325 ATTTATCTGTGGCAAAATTTCACATAA 57.059 25.926 10.57 6.22 40.11 1.90
520 521 9.941325 TTTATCTGTGGCAAAATTTCACATAAT 57.059 25.926 10.57 9.94 40.11 1.28
523 524 9.941325 ATCTGTGGCAAAATTTCACATAATAAA 57.059 25.926 10.57 0.00 40.11 1.40
524 525 9.770097 TCTGTGGCAAAATTTCACATAATAAAA 57.230 25.926 10.57 0.00 40.11 1.52
547 548 8.426881 AAAACATGGTTAAAATTTTAGCGTGT 57.573 26.923 19.32 19.32 30.70 4.49
548 549 8.426881 AAACATGGTTAAAATTTTAGCGTGTT 57.573 26.923 24.65 24.65 36.24 3.32
549 550 9.530633 AAACATGGTTAAAATTTTAGCGTGTTA 57.469 25.926 27.32 12.75 35.05 2.41
550 551 8.510132 ACATGGTTAAAATTTTAGCGTGTTAC 57.490 30.769 19.32 11.06 0.00 2.50
551 552 8.136165 ACATGGTTAAAATTTTAGCGTGTTACA 58.864 29.630 19.32 11.98 0.00 2.41
552 553 8.635124 CATGGTTAAAATTTTAGCGTGTTACAG 58.365 33.333 15.80 0.99 0.00 2.74
553 554 6.637658 TGGTTAAAATTTTAGCGTGTTACAGC 59.362 34.615 15.80 7.06 0.00 4.40
554 555 6.859508 GGTTAAAATTTTAGCGTGTTACAGCT 59.140 34.615 15.80 12.33 46.53 4.24
555 556 7.149031 GGTTAAAATTTTAGCGTGTTACAGCTG 60.149 37.037 13.48 13.48 44.32 4.24
556 557 4.419522 AATTTTAGCGTGTTACAGCTGG 57.580 40.909 19.93 0.00 44.32 4.85
557 558 1.153353 TTTAGCGTGTTACAGCTGGC 58.847 50.000 19.93 10.53 44.32 4.85
558 559 1.011968 TTAGCGTGTTACAGCTGGCG 61.012 55.000 19.93 14.37 44.32 5.69
559 560 1.868987 TAGCGTGTTACAGCTGGCGA 61.869 55.000 19.93 3.79 44.32 5.54
560 561 2.314647 GCGTGTTACAGCTGGCGAA 61.315 57.895 19.93 6.26 0.00 4.70
561 562 1.491563 CGTGTTACAGCTGGCGAAC 59.508 57.895 19.93 18.15 0.00 3.95
562 563 1.491563 GTGTTACAGCTGGCGAACG 59.508 57.895 19.93 0.00 0.00 3.95
563 564 1.068417 TGTTACAGCTGGCGAACGT 59.932 52.632 19.93 0.00 0.00 3.99
564 565 0.531090 TGTTACAGCTGGCGAACGTT 60.531 50.000 19.93 0.00 0.00 3.99
565 566 0.163146 GTTACAGCTGGCGAACGTTC 59.837 55.000 19.93 18.47 0.00 3.95
574 575 4.088421 CGAACGTTCGCCAGCTAT 57.912 55.556 34.54 0.00 44.26 2.97
575 576 1.631072 CGAACGTTCGCCAGCTATG 59.369 57.895 34.54 8.59 44.26 2.23
584 585 3.018901 CCAGCTATGGGGGCCTTT 58.981 61.111 0.84 0.00 43.54 3.11
585 586 1.311059 CCAGCTATGGGGGCCTTTT 59.689 57.895 0.84 0.00 43.54 2.27
586 587 0.325577 CCAGCTATGGGGGCCTTTTT 60.326 55.000 0.84 0.00 43.54 1.94
611 612 2.770164 TTTGCTAGGTTCCAGAGAGC 57.230 50.000 0.00 0.00 0.00 4.09
612 613 1.944177 TTGCTAGGTTCCAGAGAGCT 58.056 50.000 0.00 0.00 34.19 4.09
613 614 1.944177 TGCTAGGTTCCAGAGAGCTT 58.056 50.000 0.00 0.00 34.19 3.74
614 615 2.260822 TGCTAGGTTCCAGAGAGCTTT 58.739 47.619 0.00 0.00 34.19 3.51
615 616 3.441101 TGCTAGGTTCCAGAGAGCTTTA 58.559 45.455 0.00 0.00 34.19 1.85
616 617 4.033709 TGCTAGGTTCCAGAGAGCTTTAT 58.966 43.478 0.00 0.00 34.19 1.40
617 618 4.100189 TGCTAGGTTCCAGAGAGCTTTATC 59.900 45.833 0.00 0.00 34.19 1.75
618 619 4.343814 GCTAGGTTCCAGAGAGCTTTATCT 59.656 45.833 0.00 0.00 0.00 1.98
619 620 5.508994 GCTAGGTTCCAGAGAGCTTTATCTC 60.509 48.000 0.00 0.00 45.10 2.75
629 630 6.391227 GAGAGCTTTATCTCTTCTGCTACT 57.609 41.667 0.00 0.00 43.05 2.57
630 631 7.504924 GAGAGCTTTATCTCTTCTGCTACTA 57.495 40.000 0.00 0.00 43.05 1.82
631 632 7.272037 AGAGCTTTATCTCTTCTGCTACTAC 57.728 40.000 0.00 0.00 40.32 2.73
632 633 6.017440 AGAGCTTTATCTCTTCTGCTACTACG 60.017 42.308 0.00 0.00 40.32 3.51
633 634 5.823570 AGCTTTATCTCTTCTGCTACTACGA 59.176 40.000 0.00 0.00 0.00 3.43
634 635 6.488683 AGCTTTATCTCTTCTGCTACTACGAT 59.511 38.462 0.00 0.00 0.00 3.73
635 636 7.013846 AGCTTTATCTCTTCTGCTACTACGATT 59.986 37.037 0.00 0.00 0.00 3.34
636 637 8.291032 GCTTTATCTCTTCTGCTACTACGATTA 58.709 37.037 0.00 0.00 0.00 1.75
637 638 9.601971 CTTTATCTCTTCTGCTACTACGATTAC 57.398 37.037 0.00 0.00 0.00 1.89
638 639 8.905660 TTATCTCTTCTGCTACTACGATTACT 57.094 34.615 0.00 0.00 0.00 2.24
639 640 9.993454 TTATCTCTTCTGCTACTACGATTACTA 57.007 33.333 0.00 0.00 0.00 1.82
641 642 8.312896 TCTCTTCTGCTACTACGATTACTATG 57.687 38.462 0.00 0.00 0.00 2.23
642 643 7.932491 TCTCTTCTGCTACTACGATTACTATGT 59.068 37.037 0.00 0.00 0.00 2.29
643 644 9.205719 CTCTTCTGCTACTACGATTACTATGTA 57.794 37.037 0.00 0.00 0.00 2.29
644 645 9.722184 TCTTCTGCTACTACGATTACTATGTAT 57.278 33.333 0.00 0.00 0.00 2.29
645 646 9.762062 CTTCTGCTACTACGATTACTATGTATG 57.238 37.037 0.00 0.00 0.00 2.39
646 647 7.749808 TCTGCTACTACGATTACTATGTATGC 58.250 38.462 0.00 0.00 0.00 3.14
647 648 6.849502 TGCTACTACGATTACTATGTATGCC 58.150 40.000 0.00 0.00 0.00 4.40
648 649 6.431852 TGCTACTACGATTACTATGTATGCCA 59.568 38.462 0.00 0.00 0.00 4.92
649 650 7.040271 TGCTACTACGATTACTATGTATGCCAA 60.040 37.037 0.00 0.00 0.00 4.52
650 651 7.974501 GCTACTACGATTACTATGTATGCCAAT 59.025 37.037 0.00 0.00 0.00 3.16
651 652 9.290483 CTACTACGATTACTATGTATGCCAATG 57.710 37.037 0.00 0.00 0.00 2.82
652 653 7.097192 ACTACGATTACTATGTATGCCAATGG 58.903 38.462 0.00 0.00 0.00 3.16
653 654 5.245531 ACGATTACTATGTATGCCAATGGG 58.754 41.667 0.00 0.00 37.18 4.00
663 664 4.037441 CCAATGGGCAATGGCAGA 57.963 55.556 9.51 0.00 43.71 4.26
664 665 2.288834 CCAATGGGCAATGGCAGAA 58.711 52.632 9.51 0.00 43.71 3.02
665 666 0.108041 CCAATGGGCAATGGCAGAAC 60.108 55.000 9.51 0.00 43.71 3.01
666 667 0.108041 CAATGGGCAATGGCAGAACC 60.108 55.000 9.51 0.00 43.71 3.62
667 668 1.606885 AATGGGCAATGGCAGAACCG 61.607 55.000 9.51 0.00 43.94 4.44
668 669 2.361104 GGGCAATGGCAGAACCGA 60.361 61.111 9.51 0.00 43.94 4.69
669 670 1.976474 GGGCAATGGCAGAACCGAA 60.976 57.895 9.51 0.00 43.94 4.30
670 671 1.531739 GGGCAATGGCAGAACCGAAA 61.532 55.000 9.51 0.00 43.94 3.46
671 672 0.316841 GGCAATGGCAGAACCGAAAA 59.683 50.000 0.58 0.00 43.94 2.29
672 673 1.418373 GCAATGGCAGAACCGAAAAC 58.582 50.000 0.00 0.00 43.94 2.43
673 674 1.269517 GCAATGGCAGAACCGAAAACA 60.270 47.619 0.00 0.00 43.94 2.83
674 675 2.801342 GCAATGGCAGAACCGAAAACAA 60.801 45.455 0.00 0.00 43.94 2.83
675 676 3.452474 CAATGGCAGAACCGAAAACAAA 58.548 40.909 0.00 0.00 43.94 2.83
676 677 3.810310 ATGGCAGAACCGAAAACAAAA 57.190 38.095 0.00 0.00 43.94 2.44
717 718 4.044439 CCCTTCCCTGCTGCTGCT 62.044 66.667 17.00 0.00 40.48 4.24
718 719 2.750637 CCTTCCCTGCTGCTGCTG 60.751 66.667 17.00 15.58 40.48 4.41
719 720 3.441290 CTTCCCTGCTGCTGCTGC 61.441 66.667 22.51 22.51 40.48 5.25
729 730 2.179267 GCTGCTGCCGCCTTTAAC 59.821 61.111 4.57 0.00 34.43 2.01
739 740 3.181491 TGCCGCCTTTAACAGCAATATTC 60.181 43.478 0.00 0.00 0.00 1.75
743 744 5.066505 CCGCCTTTAACAGCAATATTCTCTT 59.933 40.000 0.00 0.00 0.00 2.85
784 785 2.622942 AGAGCGTCCATCTCAGAATCTC 59.377 50.000 0.00 0.00 33.15 2.75
785 786 2.622942 GAGCGTCCATCTCAGAATCTCT 59.377 50.000 0.00 0.00 0.00 3.10
813 814 2.046892 ACTCACCCTCATGCACGC 60.047 61.111 0.00 0.00 0.00 5.34
827 832 1.008538 CACGCAAGCAAGGAACCAC 60.009 57.895 0.00 0.00 45.62 4.16
864 869 1.032794 CGATCATCCTCGGTTCCTCA 58.967 55.000 0.00 0.00 35.03 3.86
876 881 1.479323 GGTTCCTCACATGCATGCATT 59.521 47.619 30.32 18.23 33.90 3.56
877 882 2.480759 GGTTCCTCACATGCATGCATTC 60.481 50.000 30.32 12.35 33.90 2.67
878 883 1.395635 TCCTCACATGCATGCATTCC 58.604 50.000 30.32 0.00 33.90 3.01
879 884 0.030235 CCTCACATGCATGCATTCCG 59.970 55.000 30.32 21.00 33.90 4.30
880 885 0.594028 CTCACATGCATGCATTCCGC 60.594 55.000 30.32 0.00 42.89 5.54
881 886 1.942223 CACATGCATGCATTCCGCG 60.942 57.895 30.32 20.28 46.97 6.46
883 888 4.274700 ATGCATGCATTCCGCGCC 62.275 61.111 27.46 0.00 46.97 6.53
895 900 2.586635 CGCGCCCGCCTACAAATA 60.587 61.111 0.00 0.00 37.98 1.40
896 901 2.594962 CGCGCCCGCCTACAAATAG 61.595 63.158 0.00 0.00 37.98 1.73
928 958 2.184322 CGCCTAGACGCCACACAT 59.816 61.111 0.00 0.00 0.00 3.21
931 961 1.084370 GCCTAGACGCCACACATCAC 61.084 60.000 0.00 0.00 0.00 3.06
932 962 0.246360 CCTAGACGCCACACATCACA 59.754 55.000 0.00 0.00 0.00 3.58
937 967 1.372872 CGCCACACATCACACTCGA 60.373 57.895 0.00 0.00 0.00 4.04
940 970 0.033366 CCACACATCACACTCGACCA 59.967 55.000 0.00 0.00 0.00 4.02
957 987 1.475280 ACCAGTGCATGCAATCATCAC 59.525 47.619 24.58 8.13 34.19 3.06
989 1021 3.997021 ACTACATAGTGAAGCAACAGCAC 59.003 43.478 0.00 0.00 34.72 4.40
1016 1052 1.548973 CCAATGGATCGTCGCGCTAC 61.549 60.000 5.56 3.22 0.00 3.58
1020 1071 1.944676 GGATCGTCGCGCTACCTTG 60.945 63.158 5.56 0.00 0.00 3.61
1558 1630 2.428890 CTCAACATCTTCTACGGCCTCT 59.571 50.000 0.00 0.00 0.00 3.69
2064 2136 2.165301 GTCGCTGCTTTACGCCGAT 61.165 57.895 0.00 0.00 35.38 4.18
2331 2409 2.927014 GCTCACCGAAATCGTCTTCACT 60.927 50.000 1.79 0.00 37.74 3.41
2437 2520 2.124860 TCGCGATGGACGAGGAGA 60.125 61.111 3.71 0.00 45.77 3.71
2597 2683 1.136502 CGAGAACAAGAAGAACTGCGC 60.137 52.381 0.00 0.00 0.00 6.09
2659 2745 2.124151 ATGCGCTGAATGACCCCC 60.124 61.111 9.73 0.00 0.00 5.40
2737 2823 1.986757 TGGCAGCTCCCTCTGAGAC 60.987 63.158 6.17 0.00 44.42 3.36
2742 2828 1.985116 GCTCCCTCTGAGACGGGTT 60.985 63.158 6.17 0.00 44.42 4.11
2789 2875 1.221840 CCATCACGGTGGAGAAGGG 59.778 63.158 8.50 0.00 42.02 3.95
2988 3074 2.814805 ACACCATAGAGCTTGCCATT 57.185 45.000 0.00 0.00 0.00 3.16
2989 3075 3.091633 ACACCATAGAGCTTGCCATTT 57.908 42.857 0.00 0.00 0.00 2.32
3105 3191 2.288518 GGAGTGCTTCAACGTCTTCTCT 60.289 50.000 0.00 0.00 0.00 3.10
3162 3248 0.318762 GTTCCCTCGTCAAGTCAGCT 59.681 55.000 0.00 0.00 0.00 4.24
3240 3342 4.872691 ACTGCAGATTGCTATGTTGTACTC 59.127 41.667 23.35 0.00 45.31 2.59
3246 3348 7.148340 GCAGATTGCTATGTTGTACTCTTCTTT 60.148 37.037 0.00 0.00 40.96 2.52
3249 3351 9.548208 GATTGCTATGTTGTACTCTTCTTTTTC 57.452 33.333 0.00 0.00 0.00 2.29
3250 3352 8.677148 TTGCTATGTTGTACTCTTCTTTTTCT 57.323 30.769 0.00 0.00 0.00 2.52
3251 3353 9.772973 TTGCTATGTTGTACTCTTCTTTTTCTA 57.227 29.630 0.00 0.00 0.00 2.10
3290 3404 6.944234 TGTTACTCATCGTGTATCATCTCT 57.056 37.500 0.00 0.00 0.00 3.10
3403 3519 5.355910 AGACCGCCATAAAAATGTTAATCGT 59.644 36.000 0.00 0.00 0.00 3.73
3426 3542 8.875803 TCGTATTAACACAACTAATCATCAACC 58.124 33.333 0.00 0.00 0.00 3.77
3427 3543 8.120465 CGTATTAACACAACTAATCATCAACCC 58.880 37.037 0.00 0.00 0.00 4.11
3428 3544 8.952278 GTATTAACACAACTAATCATCAACCCA 58.048 33.333 0.00 0.00 0.00 4.51
3429 3545 8.593945 ATTAACACAACTAATCATCAACCCAT 57.406 30.769 0.00 0.00 0.00 4.00
3430 3546 5.902613 ACACAACTAATCATCAACCCATG 57.097 39.130 0.00 0.00 0.00 3.66
3431 3547 4.158394 ACACAACTAATCATCAACCCATGC 59.842 41.667 0.00 0.00 0.00 4.06
3432 3548 3.701040 ACAACTAATCATCAACCCATGCC 59.299 43.478 0.00 0.00 0.00 4.40
3433 3549 3.668141 ACTAATCATCAACCCATGCCA 57.332 42.857 0.00 0.00 0.00 4.92
3434 3550 4.188937 ACTAATCATCAACCCATGCCAT 57.811 40.909 0.00 0.00 0.00 4.40
3435 3551 4.549668 ACTAATCATCAACCCATGCCATT 58.450 39.130 0.00 0.00 0.00 3.16
3436 3552 3.830744 AATCATCAACCCATGCCATTG 57.169 42.857 0.00 0.00 0.00 2.82
3437 3553 0.825410 TCATCAACCCATGCCATTGC 59.175 50.000 0.00 0.00 38.26 3.56
3450 3566 1.299541 CCATTGCACGGGCTAGTAAG 58.700 55.000 12.74 0.00 41.91 2.34
3452 3568 2.627945 CATTGCACGGGCTAGTAAGAA 58.372 47.619 12.74 0.00 41.91 2.52
3480 3596 1.270274 ACGATAACTGCCACACGTGTA 59.730 47.619 22.90 5.00 32.93 2.90
3481 3597 2.094390 ACGATAACTGCCACACGTGTAT 60.094 45.455 22.90 9.39 32.93 2.29
3482 3598 2.534349 CGATAACTGCCACACGTGTATC 59.466 50.000 22.90 16.93 0.00 2.24
3498 3614 1.761198 GTATCCGTTAAGGGGTCTGCT 59.239 52.381 14.05 0.00 41.52 4.24
3499 3615 0.541863 ATCCGTTAAGGGGTCTGCTG 59.458 55.000 14.05 0.00 41.52 4.41
3500 3616 1.745489 CCGTTAAGGGGTCTGCTGC 60.745 63.158 6.29 0.00 35.97 5.25
3637 3755 2.287059 GCAAAATGCATAACGCCCG 58.713 52.632 0.00 0.00 44.26 6.13
3697 3815 2.027605 CGCGTGACAGTCACCACT 59.972 61.111 25.11 0.00 44.20 4.00
3737 3855 2.290450 GGTCCGGACCCTTTTCAATGTA 60.290 50.000 39.24 0.00 45.68 2.29
3762 3880 0.819259 AACTGCAGTTGCCATGTCGT 60.819 50.000 30.66 2.58 41.18 4.34
3767 3885 1.664016 GCAGTTGCCATGTCGTTGAAG 60.664 52.381 0.00 0.00 34.31 3.02
3776 3894 3.807622 CCATGTCGTTGAAGTACAGTTGT 59.192 43.478 0.00 0.00 0.00 3.32
3779 3897 3.861113 TGTCGTTGAAGTACAGTTGTCAC 59.139 43.478 0.00 0.00 0.00 3.67
3817 3935 3.286353 TGTCATGGTTTCTCAACTGCAA 58.714 40.909 0.00 0.00 32.90 4.08
3821 3939 4.341806 TCATGGTTTCTCAACTGCAATTGT 59.658 37.500 7.89 0.00 32.90 2.71
3839 3958 1.973515 TGTCATCTCAGGTCAAGTGCT 59.026 47.619 0.00 0.00 0.00 4.40
3841 3960 3.578282 TGTCATCTCAGGTCAAGTGCTAA 59.422 43.478 0.00 0.00 0.00 3.09
3844 3963 6.070824 TGTCATCTCAGGTCAAGTGCTAAATA 60.071 38.462 0.00 0.00 0.00 1.40
3845 3964 6.989169 GTCATCTCAGGTCAAGTGCTAAATAT 59.011 38.462 0.00 0.00 0.00 1.28
3847 3966 5.592054 TCTCAGGTCAAGTGCTAAATATCG 58.408 41.667 0.00 0.00 0.00 2.92
3901 4021 6.614087 AGGTCTGGTTTACTATAGTTGCCATA 59.386 38.462 11.40 7.25 0.00 2.74
3975 4095 7.903145 TGTATGGTCTGATTTACTACAGTTGT 58.097 34.615 0.00 0.00 35.84 3.32
4034 4154 1.475280 CTAGGCAGTTACCGTGTAGCA 59.525 52.381 0.00 0.00 33.69 3.49
4048 4169 3.669122 CGTGTAGCACTACAAAGAGACAC 59.331 47.826 11.92 0.00 46.33 3.67
4066 4187 4.155099 AGACACGACAAAACAACATGTTCA 59.845 37.500 8.48 0.00 40.14 3.18
4068 4189 3.240401 CACGACAAAACAACATGTTCAGC 59.760 43.478 8.48 0.00 40.14 4.26
4138 4260 2.360801 GTGTACCCTGCAAAACACATGT 59.639 45.455 12.89 0.00 41.43 3.21
4186 4311 4.500499 AAGAGAGTTGCCATCTGCTTAT 57.500 40.909 0.00 0.00 42.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 6.533730 ACTCCAGGGAAAAATTTCAAATTCC 58.466 36.000 9.89 9.89 40.48 3.01
100 101 8.450578 AAACTCCAGGGAAAAATTTCAAATTC 57.549 30.769 8.06 0.00 38.92 2.17
101 102 8.821686 AAAACTCCAGGGAAAAATTTCAAATT 57.178 26.923 8.06 0.00 38.92 1.82
102 103 8.821686 AAAAACTCCAGGGAAAAATTTCAAAT 57.178 26.923 8.06 0.00 38.92 2.32
165 166 9.250624 ACGAATTTCCGAAAAACAAAATTATCA 57.749 25.926 0.00 0.00 32.90 2.15
169 170 9.613957 AAAAACGAATTTCCGAAAAACAAAATT 57.386 22.222 0.00 0.00 34.83 1.82
279 280 0.597118 GCATGCCACGTCAGCAAAAA 60.597 50.000 13.34 0.00 44.83 1.94
280 281 1.007502 GCATGCCACGTCAGCAAAA 60.008 52.632 13.34 0.00 44.83 2.44
281 282 1.898094 AGCATGCCACGTCAGCAAA 60.898 52.632 15.66 0.00 44.83 3.68
282 283 2.281692 AGCATGCCACGTCAGCAA 60.282 55.556 15.66 0.00 44.83 3.91
283 284 3.051479 CAGCATGCCACGTCAGCA 61.051 61.111 15.66 11.88 45.94 4.41
284 285 2.743538 TCAGCATGCCACGTCAGC 60.744 61.111 15.66 0.04 34.76 4.26
285 286 1.375140 AGTCAGCATGCCACGTCAG 60.375 57.895 15.66 0.00 34.76 3.51
286 287 1.668793 CAGTCAGCATGCCACGTCA 60.669 57.895 15.66 0.00 34.76 4.35
287 288 2.393768 CCAGTCAGCATGCCACGTC 61.394 63.158 15.66 1.17 34.76 4.34
288 289 2.359107 CCAGTCAGCATGCCACGT 60.359 61.111 15.66 0.00 34.76 4.49
289 290 2.046988 TCCAGTCAGCATGCCACG 60.047 61.111 15.66 3.24 34.76 4.94
290 291 2.042831 GGTCCAGTCAGCATGCCAC 61.043 63.158 15.66 11.82 34.76 5.01
291 292 2.226315 AGGTCCAGTCAGCATGCCA 61.226 57.895 15.66 0.00 34.76 4.92
292 293 1.748122 CAGGTCCAGTCAGCATGCC 60.748 63.158 15.66 0.00 34.76 4.40
293 294 2.404995 GCAGGTCCAGTCAGCATGC 61.405 63.158 10.51 10.51 34.76 4.06
294 295 1.025113 CAGCAGGTCCAGTCAGCATG 61.025 60.000 0.00 0.00 37.54 4.06
295 296 1.196766 TCAGCAGGTCCAGTCAGCAT 61.197 55.000 0.00 0.00 0.00 3.79
296 297 1.838396 TCAGCAGGTCCAGTCAGCA 60.838 57.895 0.00 0.00 0.00 4.41
297 298 1.375268 GTCAGCAGGTCCAGTCAGC 60.375 63.158 0.00 0.00 0.00 4.26
298 299 0.037512 CAGTCAGCAGGTCCAGTCAG 60.038 60.000 0.00 0.00 0.00 3.51
299 300 1.475169 CCAGTCAGCAGGTCCAGTCA 61.475 60.000 0.00 0.00 0.00 3.41
300 301 1.294780 CCAGTCAGCAGGTCCAGTC 59.705 63.158 0.00 0.00 0.00 3.51
301 302 1.460305 ACCAGTCAGCAGGTCCAGT 60.460 57.895 0.00 0.00 30.79 4.00
302 303 1.294780 GACCAGTCAGCAGGTCCAG 59.705 63.158 0.00 0.00 46.79 3.86
303 304 3.471620 GACCAGTCAGCAGGTCCA 58.528 61.111 0.00 0.00 46.79 4.02
306 307 1.680338 GTTTTGACCAGTCAGCAGGT 58.320 50.000 0.09 0.00 41.13 4.00
307 308 0.954452 GGTTTTGACCAGTCAGCAGG 59.046 55.000 0.09 0.00 41.13 4.85
308 309 0.588252 CGGTTTTGACCAGTCAGCAG 59.412 55.000 0.09 0.00 41.13 4.24
309 310 0.817634 CCGGTTTTGACCAGTCAGCA 60.818 55.000 0.09 0.00 41.13 4.41
310 311 0.818040 ACCGGTTTTGACCAGTCAGC 60.818 55.000 0.00 0.00 41.13 4.26
311 312 1.226746 GACCGGTTTTGACCAGTCAG 58.773 55.000 9.42 0.00 41.13 3.51
312 313 0.542333 TGACCGGTTTTGACCAGTCA 59.458 50.000 9.42 9.87 42.87 3.41
313 314 1.332686 GTTGACCGGTTTTGACCAGTC 59.667 52.381 9.42 5.25 37.62 3.51
314 315 1.340211 TGTTGACCGGTTTTGACCAGT 60.340 47.619 9.42 0.00 0.00 4.00
315 316 1.333619 CTGTTGACCGGTTTTGACCAG 59.666 52.381 9.42 5.91 0.00 4.00
316 317 1.065345 TCTGTTGACCGGTTTTGACCA 60.065 47.619 9.42 0.00 0.00 4.02
317 318 1.602377 CTCTGTTGACCGGTTTTGACC 59.398 52.381 9.42 0.00 0.00 4.02
318 319 2.544267 CTCTCTGTTGACCGGTTTTGAC 59.456 50.000 9.42 6.09 0.00 3.18
319 320 2.484770 CCTCTCTGTTGACCGGTTTTGA 60.485 50.000 9.42 2.50 0.00 2.69
320 321 1.873591 CCTCTCTGTTGACCGGTTTTG 59.126 52.381 9.42 0.00 0.00 2.44
321 322 1.766496 TCCTCTCTGTTGACCGGTTTT 59.234 47.619 9.42 0.00 0.00 2.43
322 323 1.344763 CTCCTCTCTGTTGACCGGTTT 59.655 52.381 9.42 0.00 0.00 3.27
323 324 0.969894 CTCCTCTCTGTTGACCGGTT 59.030 55.000 9.42 0.00 0.00 4.44
324 325 0.112606 TCTCCTCTCTGTTGACCGGT 59.887 55.000 6.92 6.92 0.00 5.28
325 326 0.814457 CTCTCCTCTCTGTTGACCGG 59.186 60.000 0.00 0.00 0.00 5.28
326 327 0.814457 CCTCTCCTCTCTGTTGACCG 59.186 60.000 0.00 0.00 0.00 4.79
327 328 1.190643 CCCTCTCCTCTCTGTTGACC 58.809 60.000 0.00 0.00 0.00 4.02
328 329 1.931635 ACCCTCTCCTCTCTGTTGAC 58.068 55.000 0.00 0.00 0.00 3.18
329 330 2.158310 TCAACCCTCTCCTCTCTGTTGA 60.158 50.000 0.00 0.00 39.59 3.18
330 331 2.251818 TCAACCCTCTCCTCTCTGTTG 58.748 52.381 0.00 0.00 35.58 3.33
331 332 2.704190 TCAACCCTCTCCTCTCTGTT 57.296 50.000 0.00 0.00 0.00 3.16
332 333 2.704190 TTCAACCCTCTCCTCTCTGT 57.296 50.000 0.00 0.00 0.00 3.41
333 334 2.433970 GGATTCAACCCTCTCCTCTCTG 59.566 54.545 0.00 0.00 0.00 3.35
334 335 2.317594 AGGATTCAACCCTCTCCTCTCT 59.682 50.000 0.00 0.00 32.62 3.10
335 336 2.758130 AGGATTCAACCCTCTCCTCTC 58.242 52.381 0.00 0.00 32.62 3.20
336 337 2.959421 AGGATTCAACCCTCTCCTCT 57.041 50.000 0.00 0.00 32.62 3.69
337 338 2.367241 GCTAGGATTCAACCCTCTCCTC 59.633 54.545 0.00 0.00 38.95 3.71
338 339 2.403561 GCTAGGATTCAACCCTCTCCT 58.596 52.381 0.00 0.00 41.06 3.69
339 340 1.418264 GGCTAGGATTCAACCCTCTCC 59.582 57.143 0.00 0.00 35.30 3.71
340 341 1.069358 CGGCTAGGATTCAACCCTCTC 59.931 57.143 0.00 0.00 35.30 3.20
341 342 1.123928 CGGCTAGGATTCAACCCTCT 58.876 55.000 0.00 0.00 35.30 3.69
342 343 0.106894 CCGGCTAGGATTCAACCCTC 59.893 60.000 0.00 0.00 45.00 4.30
343 344 0.620700 ACCGGCTAGGATTCAACCCT 60.621 55.000 0.00 0.00 45.00 4.34
344 345 0.255033 AACCGGCTAGGATTCAACCC 59.745 55.000 0.00 0.00 45.00 4.11
345 346 2.124277 AAACCGGCTAGGATTCAACC 57.876 50.000 0.00 0.00 45.00 3.77
346 347 3.078837 TCAAAACCGGCTAGGATTCAAC 58.921 45.455 0.00 0.00 45.00 3.18
347 348 3.008594 TCTCAAAACCGGCTAGGATTCAA 59.991 43.478 0.00 0.00 45.00 2.69
348 349 2.569853 TCTCAAAACCGGCTAGGATTCA 59.430 45.455 0.00 0.00 45.00 2.57
349 350 3.198872 CTCTCAAAACCGGCTAGGATTC 58.801 50.000 0.00 0.00 45.00 2.52
350 351 2.572104 ACTCTCAAAACCGGCTAGGATT 59.428 45.455 0.00 0.00 45.00 3.01
351 352 2.188817 ACTCTCAAAACCGGCTAGGAT 58.811 47.619 0.00 0.00 45.00 3.24
352 353 1.640917 ACTCTCAAAACCGGCTAGGA 58.359 50.000 0.00 0.00 45.00 2.94
354 355 2.076863 CCAACTCTCAAAACCGGCTAG 58.923 52.381 0.00 0.00 0.00 3.42
355 356 1.271163 CCCAACTCTCAAAACCGGCTA 60.271 52.381 0.00 0.00 0.00 3.93
356 357 0.537371 CCCAACTCTCAAAACCGGCT 60.537 55.000 0.00 0.00 0.00 5.52
357 358 1.524008 CCCCAACTCTCAAAACCGGC 61.524 60.000 0.00 0.00 0.00 6.13
358 359 0.893727 CCCCCAACTCTCAAAACCGG 60.894 60.000 0.00 0.00 0.00 5.28
359 360 0.179001 ACCCCCAACTCTCAAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
360 361 1.686587 CAACCCCCAACTCTCAAAACC 59.313 52.381 0.00 0.00 0.00 3.27
361 362 2.384828 ACAACCCCCAACTCTCAAAAC 58.615 47.619 0.00 0.00 0.00 2.43
362 363 2.838637 ACAACCCCCAACTCTCAAAA 57.161 45.000 0.00 0.00 0.00 2.44
363 364 3.955524 TTACAACCCCCAACTCTCAAA 57.044 42.857 0.00 0.00 0.00 2.69
364 365 4.463050 AATTACAACCCCCAACTCTCAA 57.537 40.909 0.00 0.00 0.00 3.02
365 366 4.463050 AAATTACAACCCCCAACTCTCA 57.537 40.909 0.00 0.00 0.00 3.27
366 367 5.646793 GTCTAAATTACAACCCCCAACTCTC 59.353 44.000 0.00 0.00 0.00 3.20
367 368 5.567430 GTCTAAATTACAACCCCCAACTCT 58.433 41.667 0.00 0.00 0.00 3.24
368 369 4.393990 CGTCTAAATTACAACCCCCAACTC 59.606 45.833 0.00 0.00 0.00 3.01
369 370 4.329392 CGTCTAAATTACAACCCCCAACT 58.671 43.478 0.00 0.00 0.00 3.16
370 371 3.119743 GCGTCTAAATTACAACCCCCAAC 60.120 47.826 0.00 0.00 0.00 3.77
371 372 3.083293 GCGTCTAAATTACAACCCCCAA 58.917 45.455 0.00 0.00 0.00 4.12
372 373 2.618559 GGCGTCTAAATTACAACCCCCA 60.619 50.000 0.00 0.00 0.00 4.96
373 374 2.019249 GGCGTCTAAATTACAACCCCC 58.981 52.381 0.00 0.00 0.00 5.40
374 375 2.713877 TGGCGTCTAAATTACAACCCC 58.286 47.619 0.00 0.00 0.00 4.95
375 376 4.439563 CCAATGGCGTCTAAATTACAACCC 60.440 45.833 0.00 0.00 0.00 4.11
376 377 4.396790 TCCAATGGCGTCTAAATTACAACC 59.603 41.667 0.00 0.00 0.00 3.77
377 378 5.123344 ACTCCAATGGCGTCTAAATTACAAC 59.877 40.000 0.00 0.00 0.00 3.32
378 379 5.250200 ACTCCAATGGCGTCTAAATTACAA 58.750 37.500 0.00 0.00 0.00 2.41
379 380 4.839121 ACTCCAATGGCGTCTAAATTACA 58.161 39.130 0.00 0.00 0.00 2.41
380 381 5.813080 AACTCCAATGGCGTCTAAATTAC 57.187 39.130 0.00 0.00 0.00 1.89
381 382 5.124776 CCAAACTCCAATGGCGTCTAAATTA 59.875 40.000 0.00 0.00 0.00 1.40
382 383 4.082245 CCAAACTCCAATGGCGTCTAAATT 60.082 41.667 0.00 0.00 0.00 1.82
383 384 3.443681 CCAAACTCCAATGGCGTCTAAAT 59.556 43.478 0.00 0.00 0.00 1.40
384 385 2.817258 CCAAACTCCAATGGCGTCTAAA 59.183 45.455 0.00 0.00 0.00 1.85
385 386 2.039216 TCCAAACTCCAATGGCGTCTAA 59.961 45.455 0.00 0.00 36.62 2.10
386 387 1.626321 TCCAAACTCCAATGGCGTCTA 59.374 47.619 0.00 0.00 36.62 2.59
387 388 0.400213 TCCAAACTCCAATGGCGTCT 59.600 50.000 0.00 0.00 36.62 4.18
388 389 0.804989 CTCCAAACTCCAATGGCGTC 59.195 55.000 0.00 0.00 36.62 5.19
389 390 0.110486 ACTCCAAACTCCAATGGCGT 59.890 50.000 0.00 0.00 36.62 5.68
390 391 1.068333 CAACTCCAAACTCCAATGGCG 60.068 52.381 0.00 0.00 36.62 5.69
391 392 1.963515 ACAACTCCAAACTCCAATGGC 59.036 47.619 0.00 0.00 36.62 4.40
392 393 5.782893 TTTACAACTCCAAACTCCAATGG 57.217 39.130 0.00 0.00 38.09 3.16
393 394 8.792633 TCTAATTTACAACTCCAAACTCCAATG 58.207 33.333 0.00 0.00 0.00 2.82
394 395 8.793592 GTCTAATTTACAACTCCAAACTCCAAT 58.206 33.333 0.00 0.00 0.00 3.16
395 396 7.229907 GGTCTAATTTACAACTCCAAACTCCAA 59.770 37.037 0.00 0.00 0.00 3.53
396 397 6.713450 GGTCTAATTTACAACTCCAAACTCCA 59.287 38.462 0.00 0.00 0.00 3.86
397 398 6.713450 TGGTCTAATTTACAACTCCAAACTCC 59.287 38.462 0.00 0.00 0.00 3.85
398 399 7.094762 CCTGGTCTAATTTACAACTCCAAACTC 60.095 40.741 0.00 0.00 0.00 3.01
399 400 6.715264 CCTGGTCTAATTTACAACTCCAAACT 59.285 38.462 0.00 0.00 0.00 2.66
400 401 6.569801 GCCTGGTCTAATTTACAACTCCAAAC 60.570 42.308 0.00 0.00 0.00 2.93
401 402 5.475564 GCCTGGTCTAATTTACAACTCCAAA 59.524 40.000 0.00 0.00 0.00 3.28
402 403 5.007682 GCCTGGTCTAATTTACAACTCCAA 58.992 41.667 0.00 0.00 0.00 3.53
403 404 4.042311 TGCCTGGTCTAATTTACAACTCCA 59.958 41.667 0.00 0.00 0.00 3.86
404 405 4.585879 TGCCTGGTCTAATTTACAACTCC 58.414 43.478 0.00 0.00 0.00 3.85
405 406 5.938125 TCTTGCCTGGTCTAATTTACAACTC 59.062 40.000 0.00 0.00 0.00 3.01
406 407 5.876357 TCTTGCCTGGTCTAATTTACAACT 58.124 37.500 0.00 0.00 0.00 3.16
407 408 5.705905 ACTCTTGCCTGGTCTAATTTACAAC 59.294 40.000 0.00 0.00 0.00 3.32
408 409 5.876357 ACTCTTGCCTGGTCTAATTTACAA 58.124 37.500 0.00 0.00 0.00 2.41
409 410 5.499004 ACTCTTGCCTGGTCTAATTTACA 57.501 39.130 0.00 0.00 0.00 2.41
410 411 5.063564 CGAACTCTTGCCTGGTCTAATTTAC 59.936 44.000 0.00 0.00 0.00 2.01
411 412 5.175859 CGAACTCTTGCCTGGTCTAATTTA 58.824 41.667 0.00 0.00 0.00 1.40
412 413 4.003648 CGAACTCTTGCCTGGTCTAATTT 58.996 43.478 0.00 0.00 0.00 1.82
413 414 3.600388 CGAACTCTTGCCTGGTCTAATT 58.400 45.455 0.00 0.00 0.00 1.40
414 415 2.093447 CCGAACTCTTGCCTGGTCTAAT 60.093 50.000 0.00 0.00 0.00 1.73
415 416 1.275291 CCGAACTCTTGCCTGGTCTAA 59.725 52.381 0.00 0.00 0.00 2.10
416 417 0.895530 CCGAACTCTTGCCTGGTCTA 59.104 55.000 0.00 0.00 0.00 2.59
417 418 1.674057 CCGAACTCTTGCCTGGTCT 59.326 57.895 0.00 0.00 0.00 3.85
418 419 1.376037 CCCGAACTCTTGCCTGGTC 60.376 63.158 0.00 0.00 0.00 4.02
419 420 2.750350 CCCGAACTCTTGCCTGGT 59.250 61.111 0.00 0.00 0.00 4.00
420 421 2.045926 CCCCGAACTCTTGCCTGG 60.046 66.667 0.00 0.00 0.00 4.45
421 422 1.073199 AACCCCGAACTCTTGCCTG 59.927 57.895 0.00 0.00 0.00 4.85
422 423 1.073199 CAACCCCGAACTCTTGCCT 59.927 57.895 0.00 0.00 0.00 4.75
423 424 0.536460 TTCAACCCCGAACTCTTGCC 60.536 55.000 0.00 0.00 0.00 4.52
424 425 1.314730 TTTCAACCCCGAACTCTTGC 58.685 50.000 0.00 0.00 0.00 4.01
425 426 4.438744 GCATATTTCAACCCCGAACTCTTG 60.439 45.833 0.00 0.00 0.00 3.02
426 427 3.694566 GCATATTTCAACCCCGAACTCTT 59.305 43.478 0.00 0.00 0.00 2.85
427 428 3.279434 GCATATTTCAACCCCGAACTCT 58.721 45.455 0.00 0.00 0.00 3.24
428 429 3.013921 TGCATATTTCAACCCCGAACTC 58.986 45.455 0.00 0.00 0.00 3.01
429 430 2.752903 GTGCATATTTCAACCCCGAACT 59.247 45.455 0.00 0.00 0.00 3.01
430 431 2.752903 AGTGCATATTTCAACCCCGAAC 59.247 45.455 0.00 0.00 0.00 3.95
431 432 3.080300 AGTGCATATTTCAACCCCGAA 57.920 42.857 0.00 0.00 0.00 4.30
432 433 2.799126 AGTGCATATTTCAACCCCGA 57.201 45.000 0.00 0.00 0.00 5.14
433 434 3.016736 AGAAGTGCATATTTCAACCCCG 58.983 45.455 10.07 0.00 0.00 5.73
434 435 5.185828 AGAAAGAAGTGCATATTTCAACCCC 59.814 40.000 9.42 0.00 34.77 4.95
435 436 6.272822 AGAAAGAAGTGCATATTTCAACCC 57.727 37.500 9.42 0.00 34.77 4.11
436 437 7.540055 CAGAAGAAAGAAGTGCATATTTCAACC 59.460 37.037 9.42 0.25 34.77 3.77
437 438 8.292448 TCAGAAGAAAGAAGTGCATATTTCAAC 58.708 33.333 9.42 4.00 34.77 3.18
438 439 8.394971 TCAGAAGAAAGAAGTGCATATTTCAA 57.605 30.769 9.42 0.00 34.77 2.69
439 440 7.984422 TCAGAAGAAAGAAGTGCATATTTCA 57.016 32.000 9.42 0.00 34.77 2.69
440 441 9.852091 ATTTCAGAAGAAAGAAGTGCATATTTC 57.148 29.630 0.00 0.00 46.13 2.17
441 442 9.852091 GATTTCAGAAGAAAGAAGTGCATATTT 57.148 29.630 0.00 0.00 46.13 1.40
442 443 9.017509 TGATTTCAGAAGAAAGAAGTGCATATT 57.982 29.630 0.00 0.00 46.13 1.28
443 444 8.571461 TGATTTCAGAAGAAAGAAGTGCATAT 57.429 30.769 0.00 0.00 46.13 1.78
444 445 7.984422 TGATTTCAGAAGAAAGAAGTGCATA 57.016 32.000 0.00 0.00 46.13 3.14
445 446 6.889301 TGATTTCAGAAGAAAGAAGTGCAT 57.111 33.333 0.00 0.00 46.13 3.96
446 447 6.095300 TGTTGATTTCAGAAGAAAGAAGTGCA 59.905 34.615 0.00 0.00 46.13 4.57
447 448 6.498304 TGTTGATTTCAGAAGAAAGAAGTGC 58.502 36.000 0.00 0.00 46.13 4.40
448 449 8.915871 TTTGTTGATTTCAGAAGAAAGAAGTG 57.084 30.769 0.00 0.00 46.13 3.16
449 450 9.525409 CATTTGTTGATTTCAGAAGAAAGAAGT 57.475 29.630 0.00 0.00 46.13 3.01
450 451 9.740239 TCATTTGTTGATTTCAGAAGAAAGAAG 57.260 29.630 0.00 0.00 46.13 2.85
451 452 9.520204 GTCATTTGTTGATTTCAGAAGAAAGAA 57.480 29.630 0.00 0.00 46.13 2.52
452 453 7.857389 CGTCATTTGTTGATTTCAGAAGAAAGA 59.143 33.333 0.00 0.00 46.13 2.52
453 454 7.857389 TCGTCATTTGTTGATTTCAGAAGAAAG 59.143 33.333 0.00 0.00 46.13 2.62
454 455 7.702386 TCGTCATTTGTTGATTTCAGAAGAAA 58.298 30.769 0.00 0.00 46.90 2.52
455 456 7.258022 TCGTCATTTGTTGATTTCAGAAGAA 57.742 32.000 0.00 0.00 36.54 2.52
456 457 6.859420 TCGTCATTTGTTGATTTCAGAAGA 57.141 33.333 0.00 0.00 36.54 2.87
457 458 7.912949 TTTCGTCATTTGTTGATTTCAGAAG 57.087 32.000 0.00 0.00 36.54 2.85
458 459 9.393249 GTATTTCGTCATTTGTTGATTTCAGAA 57.607 29.630 0.00 0.00 36.54 3.02
459 460 8.563732 TGTATTTCGTCATTTGTTGATTTCAGA 58.436 29.630 0.00 0.00 36.54 3.27
460 461 8.726650 TGTATTTCGTCATTTGTTGATTTCAG 57.273 30.769 0.00 0.00 36.54 3.02
461 462 9.689976 ATTGTATTTCGTCATTTGTTGATTTCA 57.310 25.926 0.00 0.00 36.54 2.69
464 465 9.689976 TGAATTGTATTTCGTCATTTGTTGATT 57.310 25.926 0.00 0.00 36.54 2.57
465 466 9.689976 TTGAATTGTATTTCGTCATTTGTTGAT 57.310 25.926 0.00 0.00 36.54 2.57
466 467 9.521503 TTTGAATTGTATTTCGTCATTTGTTGA 57.478 25.926 0.00 0.00 0.00 3.18
480 481 9.941325 TGCCACAGATAAATTTTGAATTGTATT 57.059 25.926 0.00 0.00 0.00 1.89
481 482 9.941325 TTGCCACAGATAAATTTTGAATTGTAT 57.059 25.926 0.00 0.00 0.00 2.29
482 483 9.770097 TTTGCCACAGATAAATTTTGAATTGTA 57.230 25.926 0.00 0.00 0.00 2.41
483 484 8.674263 TTTGCCACAGATAAATTTTGAATTGT 57.326 26.923 0.00 0.00 0.00 2.71
488 489 9.334947 TGAAATTTTGCCACAGATAAATTTTGA 57.665 25.926 0.00 0.00 39.16 2.69
489 490 9.384682 GTGAAATTTTGCCACAGATAAATTTTG 57.615 29.630 0.00 0.00 39.16 2.44
490 491 9.118300 TGTGAAATTTTGCCACAGATAAATTTT 57.882 25.926 7.01 0.00 39.16 1.82
491 492 8.674263 TGTGAAATTTTGCCACAGATAAATTT 57.326 26.923 7.01 0.00 40.76 1.82
492 493 8.851541 ATGTGAAATTTTGCCACAGATAAATT 57.148 26.923 14.30 0.00 43.03 1.82
493 494 9.941325 TTATGTGAAATTTTGCCACAGATAAAT 57.059 25.926 14.30 2.77 43.03 1.40
494 495 9.941325 ATTATGTGAAATTTTGCCACAGATAAA 57.059 25.926 14.30 8.20 43.03 1.40
497 498 9.941325 TTTATTATGTGAAATTTTGCCACAGAT 57.059 25.926 14.30 12.71 43.03 2.90
498 499 9.770097 TTTTATTATGTGAAATTTTGCCACAGA 57.230 25.926 14.30 8.83 43.03 3.41
521 522 8.884726 ACACGCTAAAATTTTAACCATGTTTTT 58.115 25.926 11.62 0.00 0.00 1.94
522 523 8.426881 ACACGCTAAAATTTTAACCATGTTTT 57.573 26.923 11.62 0.00 0.00 2.43
523 524 8.426881 AACACGCTAAAATTTTAACCATGTTT 57.573 26.923 11.62 0.00 0.00 2.83
524 525 8.970293 GTAACACGCTAAAATTTTAACCATGTT 58.030 29.630 20.90 20.90 0.00 2.71
525 526 8.136165 TGTAACACGCTAAAATTTTAACCATGT 58.864 29.630 11.62 10.00 0.00 3.21
526 527 8.508800 TGTAACACGCTAAAATTTTAACCATG 57.491 30.769 11.62 9.48 0.00 3.66
527 528 7.327518 GCTGTAACACGCTAAAATTTTAACCAT 59.672 33.333 11.62 0.00 0.00 3.55
528 529 6.637658 GCTGTAACACGCTAAAATTTTAACCA 59.362 34.615 11.62 0.33 0.00 3.67
529 530 6.859508 AGCTGTAACACGCTAAAATTTTAACC 59.140 34.615 11.62 5.42 34.11 2.85
530 531 7.149031 CCAGCTGTAACACGCTAAAATTTTAAC 60.149 37.037 13.81 6.68 34.58 2.01
531 532 6.858993 CCAGCTGTAACACGCTAAAATTTTAA 59.141 34.615 13.81 0.00 34.58 1.52
532 533 6.375377 CCAGCTGTAACACGCTAAAATTTTA 58.625 36.000 13.81 10.16 34.58 1.52
533 534 5.219633 CCAGCTGTAACACGCTAAAATTTT 58.780 37.500 13.81 8.75 34.58 1.82
534 535 4.794169 CCAGCTGTAACACGCTAAAATTT 58.206 39.130 13.81 0.00 34.58 1.82
535 536 3.365969 GCCAGCTGTAACACGCTAAAATT 60.366 43.478 13.81 0.00 34.58 1.82
536 537 2.161609 GCCAGCTGTAACACGCTAAAAT 59.838 45.455 13.81 0.00 34.58 1.82
537 538 1.533731 GCCAGCTGTAACACGCTAAAA 59.466 47.619 13.81 0.00 34.58 1.52
538 539 1.153353 GCCAGCTGTAACACGCTAAA 58.847 50.000 13.81 0.00 34.58 1.85
539 540 1.011968 CGCCAGCTGTAACACGCTAA 61.012 55.000 13.81 0.00 34.58 3.09
540 541 1.445410 CGCCAGCTGTAACACGCTA 60.445 57.895 13.81 0.00 34.58 4.26
541 542 2.709125 TTCGCCAGCTGTAACACGCT 62.709 55.000 13.81 0.00 36.83 5.07
542 543 2.314647 TTCGCCAGCTGTAACACGC 61.315 57.895 13.81 6.64 0.00 5.34
543 544 1.491563 GTTCGCCAGCTGTAACACG 59.508 57.895 13.81 8.34 0.00 4.49
544 545 1.219522 ACGTTCGCCAGCTGTAACAC 61.220 55.000 13.81 3.22 0.00 3.32
545 546 0.531090 AACGTTCGCCAGCTGTAACA 60.531 50.000 13.81 0.00 0.00 2.41
546 547 0.163146 GAACGTTCGCCAGCTGTAAC 59.837 55.000 13.36 12.54 0.00 2.50
547 548 1.279527 CGAACGTTCGCCAGCTGTAA 61.280 55.000 34.54 0.91 44.26 2.41
548 549 1.731613 CGAACGTTCGCCAGCTGTA 60.732 57.895 34.54 0.00 44.26 2.74
549 550 3.036084 CGAACGTTCGCCAGCTGT 61.036 61.111 34.54 0.00 44.26 4.40
558 559 1.429148 CCCATAGCTGGCGAACGTTC 61.429 60.000 18.47 18.47 41.64 3.95
559 560 1.449601 CCCATAGCTGGCGAACGTT 60.450 57.895 0.00 0.00 41.64 3.99
560 561 2.186903 CCCATAGCTGGCGAACGT 59.813 61.111 0.00 0.00 41.64 3.99
561 562 2.588877 CCCCATAGCTGGCGAACG 60.589 66.667 0.00 0.00 41.64 3.95
562 563 2.203209 CCCCCATAGCTGGCGAAC 60.203 66.667 0.00 0.00 41.64 3.95
563 564 4.189580 GCCCCCATAGCTGGCGAA 62.190 66.667 0.00 0.00 41.64 4.70
566 567 2.878858 AAAAGGCCCCCATAGCTGGC 62.879 60.000 0.00 3.42 41.64 4.85
567 568 0.325577 AAAAAGGCCCCCATAGCTGG 60.326 55.000 0.00 0.00 42.73 4.85
568 569 3.305181 AAAAAGGCCCCCATAGCTG 57.695 52.632 0.00 0.00 0.00 4.24
590 591 3.073062 AGCTCTCTGGAACCTAGCAAAAA 59.927 43.478 0.00 0.00 35.63 1.94
591 592 2.639839 AGCTCTCTGGAACCTAGCAAAA 59.360 45.455 0.00 0.00 35.63 2.44
592 593 2.260822 AGCTCTCTGGAACCTAGCAAA 58.739 47.619 0.00 0.00 35.63 3.68
593 594 1.944177 AGCTCTCTGGAACCTAGCAA 58.056 50.000 0.00 0.00 35.63 3.91
594 595 1.944177 AAGCTCTCTGGAACCTAGCA 58.056 50.000 0.00 0.00 35.63 3.49
595 596 4.343814 AGATAAAGCTCTCTGGAACCTAGC 59.656 45.833 0.00 0.00 0.00 3.42
596 597 6.084326 GAGATAAAGCTCTCTGGAACCTAG 57.916 45.833 0.00 0.00 38.90 3.02
606 607 6.391227 AGTAGCAGAAGAGATAAAGCTCTC 57.609 41.667 0.00 0.00 44.18 3.20
607 608 6.017440 CGTAGTAGCAGAAGAGATAAAGCTCT 60.017 42.308 0.00 0.00 46.81 4.09
608 609 6.017770 TCGTAGTAGCAGAAGAGATAAAGCTC 60.018 42.308 0.00 0.00 33.83 4.09
609 610 5.823570 TCGTAGTAGCAGAAGAGATAAAGCT 59.176 40.000 0.00 0.00 36.20 3.74
610 611 6.062434 TCGTAGTAGCAGAAGAGATAAAGC 57.938 41.667 0.00 0.00 0.00 3.51
611 612 9.601971 GTAATCGTAGTAGCAGAAGAGATAAAG 57.398 37.037 0.00 0.00 0.00 1.85
612 613 9.339850 AGTAATCGTAGTAGCAGAAGAGATAAA 57.660 33.333 0.00 0.00 0.00 1.40
613 614 8.905660 AGTAATCGTAGTAGCAGAAGAGATAA 57.094 34.615 0.00 0.00 0.00 1.75
615 616 8.941977 CATAGTAATCGTAGTAGCAGAAGAGAT 58.058 37.037 0.00 0.00 0.00 2.75
616 617 7.932491 ACATAGTAATCGTAGTAGCAGAAGAGA 59.068 37.037 0.00 0.00 0.00 3.10
617 618 8.090250 ACATAGTAATCGTAGTAGCAGAAGAG 57.910 38.462 0.00 0.00 0.00 2.85
618 619 9.722184 ATACATAGTAATCGTAGTAGCAGAAGA 57.278 33.333 0.00 0.00 0.00 2.87
619 620 9.762062 CATACATAGTAATCGTAGTAGCAGAAG 57.238 37.037 0.00 0.00 0.00 2.85
620 621 8.235226 GCATACATAGTAATCGTAGTAGCAGAA 58.765 37.037 0.00 0.00 0.00 3.02
621 622 7.148289 GGCATACATAGTAATCGTAGTAGCAGA 60.148 40.741 0.00 0.00 0.00 4.26
622 623 6.967767 GGCATACATAGTAATCGTAGTAGCAG 59.032 42.308 0.00 0.00 0.00 4.24
623 624 6.431852 TGGCATACATAGTAATCGTAGTAGCA 59.568 38.462 0.00 0.00 0.00 3.49
624 625 6.849502 TGGCATACATAGTAATCGTAGTAGC 58.150 40.000 0.00 0.00 0.00 3.58
625 626 9.290483 CATTGGCATACATAGTAATCGTAGTAG 57.710 37.037 0.00 0.00 0.00 2.57
626 627 8.248253 CCATTGGCATACATAGTAATCGTAGTA 58.752 37.037 0.00 0.00 0.00 1.82
627 628 7.097192 CCATTGGCATACATAGTAATCGTAGT 58.903 38.462 0.00 0.00 0.00 2.73
628 629 6.535150 CCCATTGGCATACATAGTAATCGTAG 59.465 42.308 0.00 0.00 0.00 3.51
629 630 6.403049 CCCATTGGCATACATAGTAATCGTA 58.597 40.000 0.00 0.00 0.00 3.43
630 631 5.245531 CCCATTGGCATACATAGTAATCGT 58.754 41.667 0.00 0.00 0.00 3.73
631 632 5.801350 CCCATTGGCATACATAGTAATCG 57.199 43.478 0.00 0.00 0.00 3.34
646 647 0.108041 GTTCTGCCATTGCCCATTGG 60.108 55.000 0.00 0.00 36.33 3.16
647 648 0.108041 GGTTCTGCCATTGCCCATTG 60.108 55.000 0.00 0.00 37.17 2.82
648 649 1.606885 CGGTTCTGCCATTGCCCATT 61.607 55.000 0.00 0.00 36.97 3.16
649 650 2.053865 CGGTTCTGCCATTGCCCAT 61.054 57.895 0.00 0.00 36.97 4.00
650 651 2.676121 CGGTTCTGCCATTGCCCA 60.676 61.111 0.00 0.00 36.97 5.36
651 652 1.531739 TTTCGGTTCTGCCATTGCCC 61.532 55.000 0.00 0.00 36.97 5.36
652 653 0.316841 TTTTCGGTTCTGCCATTGCC 59.683 50.000 0.00 0.00 36.97 4.52
653 654 1.269517 TGTTTTCGGTTCTGCCATTGC 60.270 47.619 0.00 0.00 36.97 3.56
654 655 2.791383 TGTTTTCGGTTCTGCCATTG 57.209 45.000 0.00 0.00 36.97 2.82
655 656 3.810310 TTTGTTTTCGGTTCTGCCATT 57.190 38.095 0.00 0.00 36.97 3.16
656 657 3.810310 TTTTGTTTTCGGTTCTGCCAT 57.190 38.095 0.00 0.00 36.97 4.40
657 658 3.594603 TTTTTGTTTTCGGTTCTGCCA 57.405 38.095 0.00 0.00 36.97 4.92
715 716 2.179267 GCTGTTAAAGGCGGCAGC 59.821 61.111 13.08 6.33 45.70 5.25
716 717 3.667087 TGCTGTTAAAGGCGGCAG 58.333 55.556 13.08 0.00 42.57 4.85
717 718 1.827681 TATTGCTGTTAAAGGCGGCA 58.172 45.000 13.08 0.00 45.33 5.69
718 719 3.066760 AGAATATTGCTGTTAAAGGCGGC 59.933 43.478 0.00 0.00 38.62 6.53
719 720 4.576463 AGAGAATATTGCTGTTAAAGGCGG 59.424 41.667 0.00 0.00 0.00 6.13
720 721 5.741388 AGAGAATATTGCTGTTAAAGGCG 57.259 39.130 0.00 0.00 0.00 5.52
721 722 6.856895 ACAAGAGAATATTGCTGTTAAAGGC 58.143 36.000 0.00 0.00 0.00 4.35
722 723 9.774742 GTTACAAGAGAATATTGCTGTTAAAGG 57.225 33.333 0.00 0.00 0.00 3.11
729 730 9.897744 TTTTCTTGTTACAAGAGAATATTGCTG 57.102 29.630 24.14 0.00 30.26 4.41
785 786 1.052124 AGGGTGAGTGTCCGTTTGGA 61.052 55.000 0.00 0.00 43.88 3.53
813 814 1.101049 ACGTGGTGGTTCCTTGCTTG 61.101 55.000 0.00 0.00 37.07 4.01
821 822 2.124122 GCATTTTGAACGTGGTGGTTC 58.876 47.619 0.00 0.00 45.10 3.62
827 832 0.109781 CGGAGGCATTTTGAACGTGG 60.110 55.000 0.00 0.00 0.00 4.94
857 862 2.480759 GGAATGCATGCATGTGAGGAAC 60.481 50.000 32.79 15.58 36.68 3.62
858 863 1.752498 GGAATGCATGCATGTGAGGAA 59.248 47.619 32.79 2.00 36.68 3.36
859 864 1.395635 GGAATGCATGCATGTGAGGA 58.604 50.000 32.79 2.83 36.68 3.71
860 865 0.030235 CGGAATGCATGCATGTGAGG 59.970 55.000 32.79 16.61 36.68 3.86
861 866 0.594028 GCGGAATGCATGCATGTGAG 60.594 55.000 32.79 23.19 45.45 3.51
864 869 2.410060 CGCGGAATGCATGCATGT 59.590 55.556 32.79 21.80 46.97 3.21
878 883 2.586635 TATTTGTAGGCGGGCGCG 60.587 61.111 20.05 20.05 43.06 6.86
879 884 0.249573 TACTATTTGTAGGCGGGCGC 60.250 55.000 0.00 0.00 41.06 6.53
880 885 1.779569 CTACTATTTGTAGGCGGGCG 58.220 55.000 0.00 0.00 43.63 6.13
889 894 4.274459 CGCTACCTCGGTACTACTATTTGT 59.726 45.833 0.00 0.00 0.00 2.83
891 896 3.251972 GCGCTACCTCGGTACTACTATTT 59.748 47.826 0.00 0.00 0.00 1.40
892 897 2.810852 GCGCTACCTCGGTACTACTATT 59.189 50.000 0.00 0.00 0.00 1.73
893 898 2.421619 GCGCTACCTCGGTACTACTAT 58.578 52.381 0.00 0.00 0.00 2.12
894 899 1.541233 GGCGCTACCTCGGTACTACTA 60.541 57.143 7.64 0.00 34.51 1.82
895 900 0.817229 GGCGCTACCTCGGTACTACT 60.817 60.000 7.64 0.00 34.51 2.57
896 901 1.651461 GGCGCTACCTCGGTACTAC 59.349 63.158 7.64 0.00 34.51 2.73
915 945 0.966179 AGTGTGATGTGTGGCGTCTA 59.034 50.000 0.00 0.00 34.29 2.59
916 946 0.319900 GAGTGTGATGTGTGGCGTCT 60.320 55.000 0.00 0.00 34.29 4.18
917 947 1.617755 CGAGTGTGATGTGTGGCGTC 61.618 60.000 0.00 0.00 0.00 5.19
918 948 1.664649 CGAGTGTGATGTGTGGCGT 60.665 57.895 0.00 0.00 0.00 5.68
919 949 1.372872 TCGAGTGTGATGTGTGGCG 60.373 57.895 0.00 0.00 0.00 5.69
932 962 0.321919 ATTGCATGCACTGGTCGAGT 60.322 50.000 22.58 0.00 34.02 4.18
937 967 1.475280 GTGATGATTGCATGCACTGGT 59.525 47.619 22.58 7.24 34.11 4.00
940 970 1.475280 GTGGTGATGATTGCATGCACT 59.525 47.619 22.58 16.46 35.14 4.40
946 976 0.888285 TGCGTGTGGTGATGATTGCA 60.888 50.000 0.00 0.00 0.00 4.08
947 977 0.452987 ATGCGTGTGGTGATGATTGC 59.547 50.000 0.00 0.00 0.00 3.56
957 987 4.301637 TCACTATGTAGTATGCGTGTGG 57.698 45.455 0.00 0.00 34.13 4.17
989 1021 2.095853 CGACGATCCATTGGTTCCAAAG 59.904 50.000 8.38 4.22 0.00 2.77
2011 2083 2.124151 GCCTGGAATGCCGGTGAT 60.124 61.111 1.90 0.00 39.04 3.06
2064 2136 0.452184 GGATGTTGAGCTCGTCGAGA 59.548 55.000 26.11 3.89 0.00 4.04
2319 2397 2.802816 GTTGCTCACAGTGAAGACGATT 59.197 45.455 4.41 0.00 0.00 3.34
2331 2409 1.112916 TCTCCCTGACGTTGCTCACA 61.113 55.000 0.00 0.00 0.00 3.58
2359 2442 1.371558 GGACCTTCTTGTCGTGCCT 59.628 57.895 0.00 0.00 36.07 4.75
2437 2520 2.502492 CGCCGATGATCTCCCTGGT 61.502 63.158 0.00 0.00 0.00 4.00
2565 2651 0.984230 TGTTCTCGAGGGCCAGAATT 59.016 50.000 13.56 0.00 31.35 2.17
2568 2654 0.541998 TCTTGTTCTCGAGGGCCAGA 60.542 55.000 13.56 9.35 0.00 3.86
2597 2683 1.462283 CAAGAGCCATTATGATCGCCG 59.538 52.381 0.00 0.00 0.00 6.46
2633 2719 1.020861 ATTCAGCGCATCAACGAGCA 61.021 50.000 11.47 0.00 33.67 4.26
2742 2828 3.583276 CTTGGCGGCACTGACGGTA 62.583 63.158 12.92 0.00 32.98 4.02
2789 2875 4.025061 CGATGAAGATGTTGAGGATCTTGC 60.025 45.833 0.00 0.00 39.72 4.01
2961 3047 0.737219 GCTCTATGGTGTACCGTCGT 59.263 55.000 0.00 0.00 39.43 4.34
2988 3074 1.358877 CGTCCGACTGCATCAATGAA 58.641 50.000 0.00 0.00 0.00 2.57
2989 3075 1.083806 GCGTCCGACTGCATCAATGA 61.084 55.000 9.53 0.00 0.00 2.57
3078 3164 0.601046 CGTTGAAGCACTCCAGCTGA 60.601 55.000 17.39 0.00 45.89 4.26
3162 3248 2.517959 CCCTTGTTCATCAGCTCCAAA 58.482 47.619 0.00 0.00 0.00 3.28
3401 3517 8.120465 GGGTTGATGATTAGTTGTGTTAATACG 58.880 37.037 0.00 0.00 0.00 3.06
3403 3519 9.693739 ATGGGTTGATGATTAGTTGTGTTAATA 57.306 29.630 0.00 0.00 0.00 0.98
3430 3546 0.746563 TTACTAGCCCGTGCAATGGC 60.747 55.000 17.82 17.82 43.51 4.40
3431 3547 1.134521 TCTTACTAGCCCGTGCAATGG 60.135 52.381 0.00 0.00 44.86 3.16
3432 3548 2.309528 TCTTACTAGCCCGTGCAATG 57.690 50.000 0.00 0.00 41.13 2.82
3433 3549 3.343941 TTTCTTACTAGCCCGTGCAAT 57.656 42.857 0.00 0.00 41.13 3.56
3434 3550 2.843401 TTTCTTACTAGCCCGTGCAA 57.157 45.000 0.00 0.00 41.13 4.08
3435 3551 2.614481 CCTTTTCTTACTAGCCCGTGCA 60.614 50.000 0.00 0.00 41.13 4.57
3436 3552 2.007608 CCTTTTCTTACTAGCCCGTGC 58.992 52.381 0.00 0.00 37.95 5.34
3437 3553 3.259902 GTCCTTTTCTTACTAGCCCGTG 58.740 50.000 0.00 0.00 0.00 4.94
3438 3554 2.094338 CGTCCTTTTCTTACTAGCCCGT 60.094 50.000 0.00 0.00 0.00 5.28
3439 3555 2.165030 TCGTCCTTTTCTTACTAGCCCG 59.835 50.000 0.00 0.00 0.00 6.13
3440 3556 3.519579 GTCGTCCTTTTCTTACTAGCCC 58.480 50.000 0.00 0.00 0.00 5.19
3441 3557 3.119708 TCGTCGTCCTTTTCTTACTAGCC 60.120 47.826 0.00 0.00 0.00 3.93
3442 3558 4.088823 TCGTCGTCCTTTTCTTACTAGC 57.911 45.455 0.00 0.00 0.00 3.42
3443 3559 7.428761 CAGTTATCGTCGTCCTTTTCTTACTAG 59.571 40.741 0.00 0.00 0.00 2.57
3450 3566 2.347755 GGCAGTTATCGTCGTCCTTTTC 59.652 50.000 0.00 0.00 0.00 2.29
3452 3568 1.274167 TGGCAGTTATCGTCGTCCTTT 59.726 47.619 0.00 0.00 0.00 3.11
3480 3596 0.541863 CAGCAGACCCCTTAACGGAT 59.458 55.000 0.00 0.00 33.16 4.18
3481 3597 1.980052 CAGCAGACCCCTTAACGGA 59.020 57.895 0.00 0.00 33.16 4.69
3482 3598 1.745489 GCAGCAGACCCCTTAACGG 60.745 63.158 0.00 0.00 0.00 4.44
3597 3715 1.545841 ACACGTAGGCATGTGAGAGA 58.454 50.000 13.69 0.00 43.26 3.10
3637 3755 2.183046 GGCTGAGAGAGGTCGTGC 59.817 66.667 0.00 0.00 0.00 5.34
3728 3846 6.366315 ACTGCAGTTAAACGTACATTGAAA 57.634 33.333 15.25 0.00 0.00 2.69
3737 3855 1.384525 TGGCAACTGCAGTTAAACGT 58.615 45.000 30.67 6.18 44.36 3.99
3762 3880 3.619483 CCAACGTGACAACTGTACTTCAA 59.381 43.478 0.00 0.00 0.00 2.69
3767 3885 2.542597 TGTCCAACGTGACAACTGTAC 58.457 47.619 6.27 0.00 42.06 2.90
3792 3910 4.202050 GCAGTTGAGAAACCATGACAACTT 60.202 41.667 0.00 0.00 45.37 2.66
3806 3924 4.644498 TGAGATGACAATTGCAGTTGAGA 58.356 39.130 26.56 13.26 33.37 3.27
3817 3935 3.008813 AGCACTTGACCTGAGATGACAAT 59.991 43.478 0.00 0.00 0.00 2.71
3821 3939 4.890158 TTTAGCACTTGACCTGAGATGA 57.110 40.909 0.00 0.00 0.00 2.92
3839 3958 6.205853 ACTGCAGTTGTCCAAAACGATATTTA 59.794 34.615 15.25 0.00 35.13 1.40
3841 3960 4.518970 ACTGCAGTTGTCCAAAACGATATT 59.481 37.500 15.25 0.00 35.13 1.28
3844 3963 2.297701 ACTGCAGTTGTCCAAAACGAT 58.702 42.857 15.25 0.00 35.13 3.73
3845 3964 1.745232 ACTGCAGTTGTCCAAAACGA 58.255 45.000 15.25 0.00 35.13 3.85
3901 4021 6.761242 GTGGCAACCTCTAAAGTTTTCAAATT 59.239 34.615 0.00 0.00 0.00 1.82
3975 4095 9.691362 GCAACTCCTAAAGTTTTTAAATCATGA 57.309 29.630 0.00 0.00 46.26 3.07
3984 4104 4.665833 GGTGGCAACTCCTAAAGTTTTT 57.334 40.909 0.00 0.00 46.26 1.94
4034 4154 5.172934 TGTTTTGTCGTGTCTCTTTGTAGT 58.827 37.500 0.00 0.00 0.00 2.73
4048 4169 3.694734 AGCTGAACATGTTGTTTTGTCG 58.305 40.909 17.58 0.00 41.28 4.35
4066 4187 4.224818 AGATGGCAACTCTCTCTTTTAGCT 59.775 41.667 0.00 0.00 37.61 3.32
4068 4189 4.332268 GCAGATGGCAACTCTCTCTTTTAG 59.668 45.833 0.00 0.00 43.97 1.85
4108 4230 1.369692 CAGGGTACACGGCAACTGA 59.630 57.895 0.00 0.00 0.00 3.41
4138 4260 3.755112 TTACCCGAACATGTCAGTTGA 57.245 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.