Multiple sequence alignment - TraesCS4A01G409300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G409300 chr4A 100.000 3911 0 0 1 3911 681895878 681899788 0.000000e+00 7223
1 TraesCS4A01G409300 chr4A 86.702 188 23 2 1277 1462 681897122 681897309 1.420000e-49 207
2 TraesCS4A01G409300 chr4A 86.702 188 23 2 1245 1432 681897154 681897339 1.420000e-49 207
3 TraesCS4A01G409300 chr4A 94.118 68 2 2 1249 1316 681897277 681897342 6.910000e-18 102
4 TraesCS4A01G409300 chr4D 94.465 2656 102 16 1245 3872 475117630 475120268 0.000000e+00 4048
5 TraesCS4A01G409300 chr4D 92.947 638 42 1 825 1462 475117151 475117785 0.000000e+00 926
6 TraesCS4A01G409300 chr4D 95.522 201 8 1 615 815 475116902 475117101 1.750000e-83 320
7 TraesCS4A01G409300 chr4D 95.322 171 8 0 76 246 417818359 417818529 4.980000e-69 272
8 TraesCS4A01G409300 chr4D 86.928 153 19 1 1310 1461 475117572 475117724 1.870000e-38 171
9 TraesCS4A01G409300 chr4B 93.551 2636 116 24 1245 3860 599811752 599814353 0.000000e+00 3877
10 TraesCS4A01G409300 chr4B 85.228 1293 95 41 245 1465 599810580 599811848 0.000000e+00 1242
11 TraesCS4A01G409300 chr4B 92.021 188 10 4 1245 1432 599811782 599811964 3.880000e-65 259
12 TraesCS4A01G409300 chr6D 95.858 169 7 0 76 244 59022083 59021915 1.380000e-69 274
13 TraesCS4A01G409300 chr5B 94.828 174 9 0 76 249 594137648 594137475 4.980000e-69 272
14 TraesCS4A01G409300 chr5B 94.828 174 8 1 76 249 438793906 438794078 1.790000e-68 270
15 TraesCS4A01G409300 chr5B 95.238 168 8 0 76 243 594136369 594136536 2.320000e-67 267
16 TraesCS4A01G409300 chr7D 94.737 171 9 0 76 246 340171355 340171525 2.320000e-67 267
17 TraesCS4A01G409300 chr7D 94.220 173 9 1 76 248 530767682 530767853 3.000000e-66 263
18 TraesCS4A01G409300 chr2B 85.549 173 25 0 79 251 479982685 479982513 8.630000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G409300 chr4A 681895878 681899788 3910 False 1934.750000 7223 91.880500 1 3911 4 chr4A.!!$F1 3910
1 TraesCS4A01G409300 chr4D 475116902 475120268 3366 False 1366.250000 4048 92.465500 615 3872 4 chr4D.!!$F2 3257
2 TraesCS4A01G409300 chr4B 599810580 599814353 3773 False 1792.666667 3877 90.266667 245 3860 3 chr4B.!!$F1 3615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.039618 AACCCCTGCGTGGATTGAAT 59.960 50.0 0.00 0.00 38.35 2.57 F
444 466 0.042731 CAGAAGAGGTAGGGGGTGGA 59.957 60.0 0.00 0.00 0.00 4.02 F
445 467 0.042881 AGAAGAGGTAGGGGGTGGAC 59.957 60.0 0.00 0.00 0.00 4.02 F
560 585 0.093705 GTGTGCGATGAAACGAGCTC 59.906 55.0 2.73 2.73 35.09 4.09 F
568 593 0.244994 TGAAACGAGCTCTGAGCCTC 59.755 55.0 25.09 19.14 43.77 4.70 F
570 595 0.246086 AAACGAGCTCTGAGCCTCTG 59.754 55.0 25.09 14.76 43.77 3.35 F
571 596 0.610509 AACGAGCTCTGAGCCTCTGA 60.611 55.0 25.09 1.13 43.77 3.27 F
1947 2184 0.999712 TCTTGGTTGGGGGAAGGATC 59.000 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2187 0.331278 TCAACCGCCTGAAATCCCAT 59.669 50.000 0.00 0.00 0.00 4.00 R
2137 2374 0.388659 CTCTCCAGGCTCCTCATTCG 59.611 60.000 0.00 0.00 0.00 3.34 R
2160 2397 0.445436 CTGCGAATGAGAACAGCCAC 59.555 55.000 0.00 0.00 0.00 5.01 R
2257 2494 1.140852 TCCAAGGTCACACTCCAACAG 59.859 52.381 0.00 0.00 0.00 3.16 R
2478 2715 1.630369 CCACCTTCAGGGATGAAGACA 59.370 52.381 17.36 0.00 45.93 3.41 R
2553 2790 1.699083 TCCCTCATCTGCTTGACAACA 59.301 47.619 0.00 0.00 0.00 3.33 R
2685 2922 9.053840 TCTGAGATGATATCTTTTCTCAATTGC 57.946 33.333 22.49 6.58 42.81 3.56 R
3701 3960 0.036388 TTAAGGAGCAGCCGGTTCTG 60.036 55.000 1.90 3.65 43.43 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.297937 AAACGTCTCCTCCCATCCC 58.702 57.895 0.00 0.00 0.00 3.85
19 20 1.614241 AAACGTCTCCTCCCATCCCG 61.614 60.000 0.00 0.00 0.00 5.14
20 21 2.442272 CGTCTCCTCCCATCCCGT 60.442 66.667 0.00 0.00 0.00 5.28
21 22 2.786495 CGTCTCCTCCCATCCCGTG 61.786 68.421 0.00 0.00 0.00 4.94
32 33 0.601057 CATCCCGTGGAACCAAAACC 59.399 55.000 0.00 0.00 34.34 3.27
33 34 0.481128 ATCCCGTGGAACCAAAACCT 59.519 50.000 0.00 0.00 34.34 3.50
34 35 0.466555 TCCCGTGGAACCAAAACCTG 60.467 55.000 0.00 0.00 0.00 4.00
35 36 1.362355 CCGTGGAACCAAAACCTGC 59.638 57.895 0.00 0.00 0.00 4.85
36 37 1.362355 CGTGGAACCAAAACCTGCC 59.638 57.895 0.00 0.00 0.00 4.85
37 38 1.745890 GTGGAACCAAAACCTGCCC 59.254 57.895 0.00 0.00 0.00 5.36
38 39 1.830408 TGGAACCAAAACCTGCCCG 60.830 57.895 0.00 0.00 0.00 6.13
39 40 1.529713 GGAACCAAAACCTGCCCGA 60.530 57.895 0.00 0.00 0.00 5.14
40 41 1.658114 GAACCAAAACCTGCCCGAC 59.342 57.895 0.00 0.00 0.00 4.79
41 42 2.125202 GAACCAAAACCTGCCCGACG 62.125 60.000 0.00 0.00 0.00 5.12
42 43 2.281208 CCAAAACCTGCCCGACGA 60.281 61.111 0.00 0.00 0.00 4.20
43 44 1.894756 CCAAAACCTGCCCGACGAA 60.895 57.895 0.00 0.00 0.00 3.85
44 45 1.281656 CAAAACCTGCCCGACGAAC 59.718 57.895 0.00 0.00 0.00 3.95
45 46 1.153127 AAAACCTGCCCGACGAACA 60.153 52.632 0.00 0.00 0.00 3.18
46 47 0.748729 AAAACCTGCCCGACGAACAA 60.749 50.000 0.00 0.00 0.00 2.83
47 48 0.748729 AAACCTGCCCGACGAACAAA 60.749 50.000 0.00 0.00 0.00 2.83
48 49 0.748729 AACCTGCCCGACGAACAAAA 60.749 50.000 0.00 0.00 0.00 2.44
49 50 1.281656 CCTGCCCGACGAACAAAAC 59.718 57.895 0.00 0.00 0.00 2.43
50 51 1.083015 CTGCCCGACGAACAAAACG 60.083 57.895 0.00 0.00 0.00 3.60
51 52 2.250190 GCCCGACGAACAAAACGG 59.750 61.111 0.00 0.00 44.16 4.44
52 53 2.536673 GCCCGACGAACAAAACGGT 61.537 57.895 0.00 0.00 43.22 4.83
53 54 1.220817 GCCCGACGAACAAAACGGTA 61.221 55.000 0.00 0.00 43.22 4.02
54 55 0.508213 CCCGACGAACAAAACGGTAC 59.492 55.000 0.00 0.00 43.22 3.34
55 56 1.207390 CCGACGAACAAAACGGTACA 58.793 50.000 0.00 0.00 40.42 2.90
56 57 1.190763 CCGACGAACAAAACGGTACAG 59.809 52.381 0.00 0.00 40.42 2.74
57 58 2.118683 CGACGAACAAAACGGTACAGA 58.881 47.619 0.00 0.00 34.93 3.41
58 59 2.097733 CGACGAACAAAACGGTACAGAC 60.098 50.000 0.00 0.00 34.93 3.51
59 60 2.859538 GACGAACAAAACGGTACAGACA 59.140 45.455 0.00 0.00 34.93 3.41
60 61 3.260740 ACGAACAAAACGGTACAGACAA 58.739 40.909 0.00 0.00 34.93 3.18
61 62 3.307782 ACGAACAAAACGGTACAGACAAG 59.692 43.478 0.00 0.00 34.93 3.16
62 63 3.552699 CGAACAAAACGGTACAGACAAGA 59.447 43.478 0.00 0.00 0.00 3.02
63 64 4.033129 CGAACAAAACGGTACAGACAAGAA 59.967 41.667 0.00 0.00 0.00 2.52
64 65 5.446206 CGAACAAAACGGTACAGACAAGAAA 60.446 40.000 0.00 0.00 0.00 2.52
65 66 5.883503 ACAAAACGGTACAGACAAGAAAA 57.116 34.783 0.00 0.00 0.00 2.29
66 67 5.875930 ACAAAACGGTACAGACAAGAAAAG 58.124 37.500 0.00 0.00 0.00 2.27
67 68 5.163693 ACAAAACGGTACAGACAAGAAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
68 69 4.411256 AACGGTACAGACAAGAAAAGGA 57.589 40.909 0.00 0.00 0.00 3.36
69 70 3.991367 ACGGTACAGACAAGAAAAGGAG 58.009 45.455 0.00 0.00 0.00 3.69
70 71 3.387050 ACGGTACAGACAAGAAAAGGAGT 59.613 43.478 0.00 0.00 0.00 3.85
71 72 3.988517 CGGTACAGACAAGAAAAGGAGTC 59.011 47.826 0.00 0.00 0.00 3.36
72 73 4.316645 GGTACAGACAAGAAAAGGAGTCC 58.683 47.826 0.00 0.00 0.00 3.85
73 74 4.040584 GGTACAGACAAGAAAAGGAGTCCT 59.959 45.833 5.62 5.62 33.87 3.85
74 75 5.245526 GGTACAGACAAGAAAAGGAGTCCTA 59.754 44.000 13.43 0.00 31.13 2.94
75 76 6.070710 GGTACAGACAAGAAAAGGAGTCCTAT 60.071 42.308 13.43 4.39 31.13 2.57
76 77 7.123847 GGTACAGACAAGAAAAGGAGTCCTATA 59.876 40.741 13.43 0.00 31.13 1.31
77 78 7.741554 ACAGACAAGAAAAGGAGTCCTATAT 57.258 36.000 13.43 1.05 31.13 0.86
78 79 7.560368 ACAGACAAGAAAAGGAGTCCTATATG 58.440 38.462 13.43 10.06 31.13 1.78
79 80 7.400339 ACAGACAAGAAAAGGAGTCCTATATGA 59.600 37.037 13.43 0.00 31.13 2.15
80 81 8.260818 CAGACAAGAAAAGGAGTCCTATATGAA 58.739 37.037 13.43 0.00 31.13 2.57
81 82 8.997734 AGACAAGAAAAGGAGTCCTATATGAAT 58.002 33.333 13.43 0.00 31.13 2.57
82 83 9.620259 GACAAGAAAAGGAGTCCTATATGAATT 57.380 33.333 13.43 0.00 31.13 2.17
83 84 9.981460 ACAAGAAAAGGAGTCCTATATGAATTT 57.019 29.630 13.43 7.31 31.13 1.82
85 86 9.981460 AAGAAAAGGAGTCCTATATGAATTTGT 57.019 29.630 13.43 3.09 31.13 2.83
88 89 9.853177 AAAAGGAGTCCTATATGAATTTGTAGG 57.147 33.333 13.43 0.00 35.99 3.18
89 90 8.798975 AAGGAGTCCTATATGAATTTGTAGGA 57.201 34.615 13.43 0.00 40.17 2.94
95 96 8.666129 TCCTATATGAATTTGTAGGACTAGGG 57.334 38.462 0.00 0.00 38.17 3.53
96 97 8.461854 TCCTATATGAATTTGTAGGACTAGGGA 58.538 37.037 0.00 0.00 38.17 4.20
97 98 9.273137 CCTATATGAATTTGTAGGACTAGGGAT 57.727 37.037 0.00 0.00 36.62 3.85
101 102 7.938140 TGAATTTGTAGGACTAGGGATTTTG 57.062 36.000 0.00 0.00 0.00 2.44
102 103 6.889722 TGAATTTGTAGGACTAGGGATTTTGG 59.110 38.462 0.00 0.00 0.00 3.28
103 104 4.855298 TTGTAGGACTAGGGATTTTGGG 57.145 45.455 0.00 0.00 0.00 4.12
104 105 3.120108 TGTAGGACTAGGGATTTTGGGG 58.880 50.000 0.00 0.00 0.00 4.96
105 106 2.680439 AGGACTAGGGATTTTGGGGA 57.320 50.000 0.00 0.00 0.00 4.81
106 107 3.166636 AGGACTAGGGATTTTGGGGAT 57.833 47.619 0.00 0.00 0.00 3.85
107 108 3.485136 AGGACTAGGGATTTTGGGGATT 58.515 45.455 0.00 0.00 0.00 3.01
108 109 4.652628 AGGACTAGGGATTTTGGGGATTA 58.347 43.478 0.00 0.00 0.00 1.75
109 110 5.050685 AGGACTAGGGATTTTGGGGATTAA 58.949 41.667 0.00 0.00 0.00 1.40
110 111 5.103643 AGGACTAGGGATTTTGGGGATTAAC 60.104 44.000 0.00 0.00 0.00 2.01
111 112 5.138276 GACTAGGGATTTTGGGGATTAACC 58.862 45.833 0.00 0.00 38.08 2.85
112 113 3.026707 AGGGATTTTGGGGATTAACCG 57.973 47.619 0.00 0.00 40.11 4.44
113 114 2.583566 AGGGATTTTGGGGATTAACCGA 59.416 45.455 0.00 0.00 40.11 4.69
114 115 3.011934 AGGGATTTTGGGGATTAACCGAA 59.988 43.478 0.00 0.00 40.11 4.30
115 116 3.964688 GGGATTTTGGGGATTAACCGAAT 59.035 43.478 0.00 0.00 40.11 3.34
116 117 4.202212 GGGATTTTGGGGATTAACCGAATG 60.202 45.833 0.00 0.00 40.11 2.67
117 118 4.647399 GGATTTTGGGGATTAACCGAATGA 59.353 41.667 0.00 0.00 40.11 2.57
118 119 5.128008 GGATTTTGGGGATTAACCGAATGAA 59.872 40.000 0.00 0.00 40.11 2.57
119 120 6.183360 GGATTTTGGGGATTAACCGAATGAAT 60.183 38.462 0.00 0.00 40.11 2.57
120 121 5.845391 TTTGGGGATTAACCGAATGAATC 57.155 39.130 0.00 0.00 40.11 2.52
121 122 4.788925 TGGGGATTAACCGAATGAATCT 57.211 40.909 0.00 0.00 40.11 2.40
122 123 5.897851 TGGGGATTAACCGAATGAATCTA 57.102 39.130 0.00 0.00 40.11 1.98
123 124 6.255294 TGGGGATTAACCGAATGAATCTAA 57.745 37.500 0.00 0.00 40.11 2.10
124 125 6.664714 TGGGGATTAACCGAATGAATCTAAA 58.335 36.000 0.00 0.00 40.11 1.85
125 126 6.770785 TGGGGATTAACCGAATGAATCTAAAG 59.229 38.462 0.00 0.00 40.11 1.85
126 127 6.771267 GGGGATTAACCGAATGAATCTAAAGT 59.229 38.462 0.00 0.00 40.11 2.66
127 128 7.255139 GGGGATTAACCGAATGAATCTAAAGTG 60.255 40.741 0.00 0.00 40.11 3.16
128 129 7.497909 GGGATTAACCGAATGAATCTAAAGTGA 59.502 37.037 0.00 0.00 40.11 3.41
129 130 8.336080 GGATTAACCGAATGAATCTAAAGTGAC 58.664 37.037 0.00 0.00 31.54 3.67
130 131 8.786826 ATTAACCGAATGAATCTAAAGTGACA 57.213 30.769 0.00 0.00 0.00 3.58
131 132 6.727824 AACCGAATGAATCTAAAGTGACAG 57.272 37.500 0.00 0.00 0.00 3.51
132 133 5.178797 ACCGAATGAATCTAAAGTGACAGG 58.821 41.667 0.00 0.00 0.00 4.00
133 134 4.572389 CCGAATGAATCTAAAGTGACAGGG 59.428 45.833 0.00 0.00 0.00 4.45
134 135 5.419542 CGAATGAATCTAAAGTGACAGGGA 58.580 41.667 0.00 0.00 0.00 4.20
135 136 6.051717 CGAATGAATCTAAAGTGACAGGGAT 58.948 40.000 0.00 0.00 0.00 3.85
136 137 6.540189 CGAATGAATCTAAAGTGACAGGGATT 59.460 38.462 0.00 0.00 0.00 3.01
137 138 7.710907 CGAATGAATCTAAAGTGACAGGGATTA 59.289 37.037 0.00 0.00 0.00 1.75
138 139 8.970859 AATGAATCTAAAGTGACAGGGATTAG 57.029 34.615 0.00 0.00 0.00 1.73
139 140 7.733773 TGAATCTAAAGTGACAGGGATTAGA 57.266 36.000 0.00 0.00 37.11 2.10
140 141 8.146053 TGAATCTAAAGTGACAGGGATTAGAA 57.854 34.615 0.00 0.00 36.50 2.10
141 142 8.260818 TGAATCTAAAGTGACAGGGATTAGAAG 58.739 37.037 0.00 0.00 36.50 2.85
142 143 6.546428 TCTAAAGTGACAGGGATTAGAAGG 57.454 41.667 0.00 0.00 31.58 3.46
143 144 6.261435 TCTAAAGTGACAGGGATTAGAAGGA 58.739 40.000 0.00 0.00 31.58 3.36
144 145 5.843019 AAAGTGACAGGGATTAGAAGGAA 57.157 39.130 0.00 0.00 0.00 3.36
145 146 5.843019 AAGTGACAGGGATTAGAAGGAAA 57.157 39.130 0.00 0.00 0.00 3.13
146 147 6.394345 AAGTGACAGGGATTAGAAGGAAAT 57.606 37.500 0.00 0.00 0.00 2.17
147 148 5.749462 AGTGACAGGGATTAGAAGGAAATG 58.251 41.667 0.00 0.00 0.00 2.32
148 149 4.336713 GTGACAGGGATTAGAAGGAAATGC 59.663 45.833 0.00 0.00 0.00 3.56
149 150 4.018506 TGACAGGGATTAGAAGGAAATGCA 60.019 41.667 0.00 0.00 0.00 3.96
150 151 4.934356 ACAGGGATTAGAAGGAAATGCAA 58.066 39.130 0.00 0.00 0.00 4.08
151 152 5.522641 ACAGGGATTAGAAGGAAATGCAAT 58.477 37.500 0.00 0.00 0.00 3.56
152 153 6.672593 ACAGGGATTAGAAGGAAATGCAATA 58.327 36.000 0.00 0.00 0.00 1.90
153 154 7.125391 ACAGGGATTAGAAGGAAATGCAATAA 58.875 34.615 0.00 0.00 0.00 1.40
154 155 7.786464 ACAGGGATTAGAAGGAAATGCAATAAT 59.214 33.333 0.00 0.00 0.00 1.28
155 156 8.086522 CAGGGATTAGAAGGAAATGCAATAATG 58.913 37.037 0.00 0.00 0.00 1.90
156 157 7.234166 AGGGATTAGAAGGAAATGCAATAATGG 59.766 37.037 0.00 0.00 0.00 3.16
157 158 7.381323 GGATTAGAAGGAAATGCAATAATGGG 58.619 38.462 0.00 0.00 0.00 4.00
158 159 6.729690 TTAGAAGGAAATGCAATAATGGGG 57.270 37.500 0.00 0.00 0.00 4.96
159 160 4.882559 AGAAGGAAATGCAATAATGGGGA 58.117 39.130 0.00 0.00 0.00 4.81
160 161 5.470501 AGAAGGAAATGCAATAATGGGGAT 58.529 37.500 0.00 0.00 0.00 3.85
161 162 5.907079 AGAAGGAAATGCAATAATGGGGATT 59.093 36.000 0.00 0.00 0.00 3.01
162 163 5.556006 AGGAAATGCAATAATGGGGATTG 57.444 39.130 0.00 0.00 37.35 2.67
163 164 4.348754 AGGAAATGCAATAATGGGGATTGG 59.651 41.667 0.00 0.00 35.28 3.16
164 165 4.505390 GGAAATGCAATAATGGGGATTGGG 60.505 45.833 0.00 0.00 35.28 4.12
165 166 2.864885 TGCAATAATGGGGATTGGGT 57.135 45.000 0.00 0.00 35.28 4.51
166 167 2.396608 TGCAATAATGGGGATTGGGTG 58.603 47.619 0.00 0.00 35.28 4.61
167 168 2.023598 TGCAATAATGGGGATTGGGTGA 60.024 45.455 0.00 0.00 35.28 4.02
168 169 2.629617 GCAATAATGGGGATTGGGTGAG 59.370 50.000 0.00 0.00 35.28 3.51
169 170 3.233507 CAATAATGGGGATTGGGTGAGG 58.766 50.000 0.00 0.00 31.80 3.86
170 171 1.231018 TAATGGGGATTGGGTGAGGG 58.769 55.000 0.00 0.00 0.00 4.30
171 172 1.593166 AATGGGGATTGGGTGAGGGG 61.593 60.000 0.00 0.00 0.00 4.79
172 173 3.429580 GGGGATTGGGTGAGGGGG 61.430 72.222 0.00 0.00 0.00 5.40
173 174 2.617215 GGGATTGGGTGAGGGGGT 60.617 66.667 0.00 0.00 0.00 4.95
174 175 2.683475 GGATTGGGTGAGGGGGTG 59.317 66.667 0.00 0.00 0.00 4.61
175 176 2.683475 GATTGGGTGAGGGGGTGG 59.317 66.667 0.00 0.00 0.00 4.61
176 177 2.946650 ATTGGGTGAGGGGGTGGG 60.947 66.667 0.00 0.00 0.00 4.61
177 178 3.848200 ATTGGGTGAGGGGGTGGGT 62.848 63.158 0.00 0.00 0.00 4.51
180 181 3.647771 GGTGAGGGGGTGGGTGTC 61.648 72.222 0.00 0.00 0.00 3.67
181 182 2.852075 GTGAGGGGGTGGGTGTCA 60.852 66.667 0.00 0.00 0.00 3.58
182 183 2.852075 TGAGGGGGTGGGTGTCAC 60.852 66.667 0.00 0.00 45.34 3.67
192 193 4.174305 GGTGTCACCAAACCCCTG 57.826 61.111 17.59 0.00 38.42 4.45
193 194 2.200337 GGTGTCACCAAACCCCTGC 61.200 63.158 17.59 0.00 38.42 4.85
194 195 2.203280 TGTCACCAAACCCCTGCG 60.203 61.111 0.00 0.00 0.00 5.18
195 196 2.203294 GTCACCAAACCCCTGCGT 60.203 61.111 0.00 0.00 0.00 5.24
196 197 2.203280 TCACCAAACCCCTGCGTG 60.203 61.111 0.00 0.00 0.00 5.34
197 198 3.294493 CACCAAACCCCTGCGTGG 61.294 66.667 0.00 0.00 37.17 4.94
198 199 3.494254 ACCAAACCCCTGCGTGGA 61.494 61.111 0.00 0.00 38.35 4.02
199 200 2.035626 CCAAACCCCTGCGTGGAT 59.964 61.111 0.00 0.00 38.35 3.41
200 201 1.606313 CCAAACCCCTGCGTGGATT 60.606 57.895 0.00 0.00 38.35 3.01
201 202 1.586028 CAAACCCCTGCGTGGATTG 59.414 57.895 0.00 0.00 38.35 2.67
202 203 0.893270 CAAACCCCTGCGTGGATTGA 60.893 55.000 3.76 0.00 38.35 2.57
203 204 0.178975 AAACCCCTGCGTGGATTGAA 60.179 50.000 0.00 0.00 38.35 2.69
204 205 0.039618 AACCCCTGCGTGGATTGAAT 59.960 50.000 0.00 0.00 38.35 2.57
205 206 0.394352 ACCCCTGCGTGGATTGAATC 60.394 55.000 0.00 0.00 38.35 2.52
217 218 3.953542 GATTGAATCCACTAGGGGGTT 57.046 47.619 10.05 10.05 37.22 4.11
218 219 3.555966 GATTGAATCCACTAGGGGGTTG 58.444 50.000 16.25 0.00 37.22 3.77
219 220 2.352561 TGAATCCACTAGGGGGTTGA 57.647 50.000 16.25 1.99 37.22 3.18
220 221 2.638325 TGAATCCACTAGGGGGTTGAA 58.362 47.619 16.25 0.00 37.22 2.69
221 222 3.197983 TGAATCCACTAGGGGGTTGAAT 58.802 45.455 16.25 0.00 37.22 2.57
222 223 3.202151 TGAATCCACTAGGGGGTTGAATC 59.798 47.826 16.25 0.00 37.22 2.52
223 224 2.661176 TCCACTAGGGGGTTGAATCT 57.339 50.000 12.23 0.00 37.22 2.40
224 225 2.478292 TCCACTAGGGGGTTGAATCTC 58.522 52.381 12.23 0.00 37.22 2.75
225 226 1.490910 CCACTAGGGGGTTGAATCTCC 59.509 57.143 1.79 0.00 0.00 3.71
226 227 2.196595 CACTAGGGGGTTGAATCTCCA 58.803 52.381 0.00 0.00 0.00 3.86
227 228 2.780010 CACTAGGGGGTTGAATCTCCAT 59.220 50.000 0.00 0.00 0.00 3.41
228 229 3.049344 ACTAGGGGGTTGAATCTCCATC 58.951 50.000 0.00 0.00 0.00 3.51
229 230 1.985622 AGGGGGTTGAATCTCCATCA 58.014 50.000 0.00 0.00 0.00 3.07
230 231 2.287584 AGGGGGTTGAATCTCCATCAA 58.712 47.619 0.00 0.00 34.56 2.57
236 237 4.342352 GTTGAATCTCCATCAACCGAAC 57.658 45.455 7.92 0.00 46.94 3.95
237 238 3.694043 TGAATCTCCATCAACCGAACA 57.306 42.857 0.00 0.00 0.00 3.18
238 239 4.014569 TGAATCTCCATCAACCGAACAA 57.985 40.909 0.00 0.00 0.00 2.83
239 240 4.002982 TGAATCTCCATCAACCGAACAAG 58.997 43.478 0.00 0.00 0.00 3.16
240 241 2.472695 TCTCCATCAACCGAACAAGG 57.527 50.000 0.00 0.00 37.30 3.61
241 242 0.804989 CTCCATCAACCGAACAAGGC 59.195 55.000 0.00 0.00 33.69 4.35
242 243 0.608035 TCCATCAACCGAACAAGGCC 60.608 55.000 0.00 0.00 33.69 5.19
243 244 0.609131 CCATCAACCGAACAAGGCCT 60.609 55.000 0.00 0.00 33.69 5.19
244 245 0.804989 CATCAACCGAACAAGGCCTC 59.195 55.000 5.23 0.00 33.69 4.70
245 246 0.400213 ATCAACCGAACAAGGCCTCA 59.600 50.000 5.23 0.00 33.69 3.86
246 247 0.181587 TCAACCGAACAAGGCCTCAA 59.818 50.000 5.23 0.00 33.69 3.02
247 248 0.593128 CAACCGAACAAGGCCTCAAG 59.407 55.000 5.23 1.18 33.69 3.02
248 249 0.537371 AACCGAACAAGGCCTCAAGG 60.537 55.000 5.23 8.49 38.53 3.61
249 250 1.675641 CCGAACAAGGCCTCAAGGG 60.676 63.158 5.23 0.00 35.18 3.95
250 251 1.675641 CGAACAAGGCCTCAAGGGG 60.676 63.158 5.23 0.00 35.18 4.79
251 252 1.460699 GAACAAGGCCTCAAGGGGT 59.539 57.895 5.23 0.00 35.18 4.95
252 253 0.895559 GAACAAGGCCTCAAGGGGTG 60.896 60.000 5.23 0.00 35.18 4.61
290 291 4.477975 GCCCGACGGACAGACTCG 62.478 72.222 17.49 0.00 0.00 4.18
299 300 0.322636 GGACAGACTCGACCTCCTGA 60.323 60.000 0.00 0.00 0.00 3.86
305 306 3.708220 CTCGACCTCCTGAAGCGGC 62.708 68.421 0.00 0.00 0.00 6.53
325 326 4.873129 CGACGACCCCTCCATGCG 62.873 72.222 0.00 0.00 0.00 4.73
351 352 0.108615 CACTTCGGGCTCGTCTGAAT 60.109 55.000 5.57 0.00 37.69 2.57
366 367 1.078143 GAATCCGCAGACAAGCCCT 60.078 57.895 0.00 0.00 0.00 5.19
367 368 0.678048 GAATCCGCAGACAAGCCCTT 60.678 55.000 0.00 0.00 0.00 3.95
379 380 3.281240 GCCCTTGCTCATGTGGTG 58.719 61.111 0.00 0.00 33.53 4.17
380 381 2.345760 GCCCTTGCTCATGTGGTGG 61.346 63.158 0.00 0.00 33.53 4.61
382 383 1.379916 CCTTGCTCATGTGGTGGGA 59.620 57.895 0.00 0.00 0.00 4.37
383 384 0.962356 CCTTGCTCATGTGGTGGGAC 60.962 60.000 0.00 0.00 0.00 4.46
384 385 1.300971 CTTGCTCATGTGGTGGGACG 61.301 60.000 0.00 0.00 0.00 4.79
387 388 1.446099 CTCATGTGGTGGGACGACG 60.446 63.158 0.00 0.00 28.75 5.12
394 416 2.257676 GTGGGACGACGAGGTGAC 59.742 66.667 0.00 0.00 0.00 3.67
411 433 2.912542 CTGATCGGGGGCTAGCGA 60.913 66.667 9.00 0.00 0.00 4.93
422 444 3.094062 GCTAGCGACCATGGAGGCA 62.094 63.158 25.87 14.87 43.14 4.75
426 448 1.971167 GCGACCATGGAGGCAAACA 60.971 57.895 21.47 0.00 43.14 2.83
428 450 0.321564 CGACCATGGAGGCAAACAGA 60.322 55.000 21.47 0.00 43.14 3.41
431 453 1.425066 ACCATGGAGGCAAACAGAAGA 59.575 47.619 21.47 0.00 43.14 2.87
438 460 1.630878 AGGCAAACAGAAGAGGTAGGG 59.369 52.381 0.00 0.00 0.00 3.53
439 461 1.340114 GGCAAACAGAAGAGGTAGGGG 60.340 57.143 0.00 0.00 0.00 4.79
440 462 1.340114 GCAAACAGAAGAGGTAGGGGG 60.340 57.143 0.00 0.00 0.00 5.40
441 463 1.985895 CAAACAGAAGAGGTAGGGGGT 59.014 52.381 0.00 0.00 0.00 4.95
442 464 1.657804 AACAGAAGAGGTAGGGGGTG 58.342 55.000 0.00 0.00 0.00 4.61
443 465 0.252742 ACAGAAGAGGTAGGGGGTGG 60.253 60.000 0.00 0.00 0.00 4.61
444 466 0.042731 CAGAAGAGGTAGGGGGTGGA 59.957 60.000 0.00 0.00 0.00 4.02
445 467 0.042881 AGAAGAGGTAGGGGGTGGAC 59.957 60.000 0.00 0.00 0.00 4.02
446 468 0.252558 GAAGAGGTAGGGGGTGGACA 60.253 60.000 0.00 0.00 0.00 4.02
447 469 0.195096 AAGAGGTAGGGGGTGGACAA 59.805 55.000 0.00 0.00 0.00 3.18
471 493 4.063967 CCACCGCTGCCGTAGTGA 62.064 66.667 0.00 0.00 39.30 3.41
533 556 2.356667 GAGGGAGGTGGGCAAAGG 59.643 66.667 0.00 0.00 0.00 3.11
535 558 3.264845 GGGAGGTGGGCAAAGGGA 61.265 66.667 0.00 0.00 0.00 4.20
546 569 0.877743 GCAAAGGGAGAAGAGTGTGC 59.122 55.000 0.00 0.00 0.00 4.57
560 585 0.093705 GTGTGCGATGAAACGAGCTC 59.906 55.000 2.73 2.73 35.09 4.09
564 589 0.919981 GCGATGAAACGAGCTCTGAG 59.080 55.000 12.85 0.00 35.09 3.35
565 590 0.919981 CGATGAAACGAGCTCTGAGC 59.080 55.000 21.72 21.72 42.84 4.26
566 591 1.285578 GATGAAACGAGCTCTGAGCC 58.714 55.000 25.09 15.54 43.77 4.70
567 592 0.901124 ATGAAACGAGCTCTGAGCCT 59.099 50.000 25.09 13.03 43.77 4.58
568 593 0.244994 TGAAACGAGCTCTGAGCCTC 59.755 55.000 25.09 19.14 43.77 4.70
569 594 0.530288 GAAACGAGCTCTGAGCCTCT 59.470 55.000 25.09 7.86 43.77 3.69
570 595 0.246086 AAACGAGCTCTGAGCCTCTG 59.754 55.000 25.09 14.76 43.77 3.35
571 596 0.610509 AACGAGCTCTGAGCCTCTGA 60.611 55.000 25.09 1.13 43.77 3.27
576 601 1.139308 CTCTGAGCCTCTGACTGCG 59.861 63.158 0.00 0.00 0.00 5.18
709 747 1.478654 CCACATTTATTCCCTCCCCCG 60.479 57.143 0.00 0.00 0.00 5.73
713 751 1.339644 TTTATTCCCTCCCCCGGTCG 61.340 60.000 0.00 0.00 0.00 4.79
815 854 2.322658 CATTCCCATTCCCATTCCCAG 58.677 52.381 0.00 0.00 0.00 4.45
954 1044 4.514577 CTCGGCTGCGAATCCGGT 62.515 66.667 5.71 0.00 45.31 5.28
1335 1425 2.395651 CGTCGTCGAGAAGGAGGAT 58.604 57.895 0.00 0.00 39.71 3.24
1337 1427 1.096416 GTCGTCGAGAAGGAGGATGT 58.904 55.000 0.00 0.00 33.86 3.06
1367 1457 3.382832 CGTCGGCAAGGAGGAGGT 61.383 66.667 0.00 0.00 0.00 3.85
1841 2078 4.490706 AGGTATCTCTGGGGGTATAACAC 58.509 47.826 0.00 0.00 0.00 3.32
1843 2080 5.377769 AGGTATCTCTGGGGGTATAACACTA 59.622 44.000 0.00 0.00 0.00 2.74
1859 2096 3.195591 CTACGATGAGGGACGCCGG 62.196 68.421 0.00 0.00 0.00 6.13
1896 2133 1.283321 GATTGGTTGAGGAAGAGGCCT 59.717 52.381 3.86 3.86 42.17 5.19
1947 2184 0.999712 TCTTGGTTGGGGGAAGGATC 59.000 55.000 0.00 0.00 0.00 3.36
1950 2187 2.674754 GTTGGGGGAAGGATCGCA 59.325 61.111 0.00 0.00 40.13 5.10
2112 2349 1.632589 ATTTCCACCCTGCCAAAGAC 58.367 50.000 0.00 0.00 0.00 3.01
2115 2352 1.228124 CCACCCTGCCAAAGACGAA 60.228 57.895 0.00 0.00 0.00 3.85
2136 2373 4.590850 AGATGTTTTCCTTTGGCAAGAC 57.409 40.909 0.00 0.00 30.57 3.01
2137 2374 3.321968 AGATGTTTTCCTTTGGCAAGACC 59.678 43.478 0.00 0.00 39.84 3.85
2226 2463 2.368221 GTCTATCAGAGGGCAGCTCATT 59.632 50.000 0.00 0.00 0.00 2.57
2257 2494 5.008613 TGCAGGACATCAAGTTTCTGTAAAC 59.991 40.000 0.00 0.00 44.47 2.01
2331 2568 4.321718 TGAAGATGTTCCAGAGCTCTTTG 58.678 43.478 15.27 8.68 0.00 2.77
2478 2715 7.798596 TCCGAAGAATTATACGAGTTACTCT 57.201 36.000 10.83 0.67 0.00 3.24
2532 2769 4.633565 GGAAATGTCAGTGTTGAGGAGATC 59.366 45.833 0.00 0.00 32.98 2.75
2553 2790 7.486473 AGATCCTAAGAAGTATCCATCCAGAT 58.514 38.462 0.00 0.00 0.00 2.90
2685 2922 3.236816 GGCAATCATCAACAAAGTGACG 58.763 45.455 0.00 0.00 0.00 4.35
2696 2933 4.630894 ACAAAGTGACGCAATTGAGAAA 57.369 36.364 16.56 0.43 0.00 2.52
2768 3005 6.211584 AGCTGGAAGTATGAACTGTTAGAAGA 59.788 38.462 0.00 0.00 35.62 2.87
2769 3006 6.874134 GCTGGAAGTATGAACTGTTAGAAGAA 59.126 38.462 0.00 0.00 35.62 2.52
2770 3007 7.064016 GCTGGAAGTATGAACTGTTAGAAGAAG 59.936 40.741 0.00 0.00 35.62 2.85
2784 3021 2.003301 GAAGAAGGACAGCGGACAATC 58.997 52.381 0.00 0.00 0.00 2.67
2793 3030 1.810030 GCGGACAATCGGACCTCAC 60.810 63.158 0.00 0.00 0.00 3.51
2834 3071 0.178924 AAGCCCAAGCCCAAAGACAT 60.179 50.000 0.00 0.00 41.25 3.06
2930 3167 2.320587 CCGCACAACTGACTGCTCC 61.321 63.158 0.00 0.00 0.00 4.70
3026 3263 4.960938 TGTAGCCTTGGTGATCATGTATC 58.039 43.478 0.00 0.00 34.93 2.24
3064 3301 0.517316 CTGCAGCCGGTGTAAGAAAC 59.483 55.000 0.00 0.00 0.00 2.78
3204 3442 7.618019 AATCCTTGCAAGATCTAGTGGTATA 57.382 36.000 28.05 0.00 0.00 1.47
3207 3445 6.782494 TCCTTGCAAGATCTAGTGGTATATCA 59.218 38.462 28.05 0.00 0.00 2.15
3314 3552 6.873076 TCTTTTTACATGCCCAATTTAGCAAG 59.127 34.615 3.40 2.25 43.36 4.01
3324 3563 3.193479 CCAATTTAGCAAGGAACTGGGAC 59.807 47.826 0.00 0.00 40.86 4.46
3344 3583 4.329545 TCGGGCTGACAAGTGGCC 62.330 66.667 0.00 0.00 44.59 5.36
3397 3636 4.759693 GTGTTCCTGTTCATGGTGATGTAA 59.240 41.667 0.00 0.00 0.00 2.41
3425 3664 3.106827 TGCCTGGATCATGTGAGAAGTA 58.893 45.455 0.00 0.00 0.00 2.24
3491 3733 1.743958 CAAGGAAGAGCTCTGCCATTG 59.256 52.381 37.51 30.77 44.64 2.82
3492 3734 0.990374 AGGAAGAGCTCTGCCATTGT 59.010 50.000 37.51 18.15 44.64 2.71
3493 3735 1.353694 AGGAAGAGCTCTGCCATTGTT 59.646 47.619 37.51 17.77 44.64 2.83
3499 3741 2.089980 AGCTCTGCCATTGTTGTGATC 58.910 47.619 0.00 0.00 0.00 2.92
3519 3761 3.242867 TCTCACTGTCCTGTTTCCTCAT 58.757 45.455 0.00 0.00 0.00 2.90
3522 3764 5.127845 TCTCACTGTCCTGTTTCCTCATATC 59.872 44.000 0.00 0.00 0.00 1.63
3526 3768 3.767131 TGTCCTGTTTCCTCATATCGTGA 59.233 43.478 0.00 0.00 35.05 4.35
3548 3790 3.438216 TTCATTTCATCAGGCTGTGGA 57.562 42.857 15.27 10.40 0.00 4.02
3583 3825 4.774124 TGTGCCATTATTGAGAGAAGAGG 58.226 43.478 0.00 0.00 0.00 3.69
3676 3935 4.885907 ACATGTGGTGGATTGATGATTCTC 59.114 41.667 0.00 0.00 0.00 2.87
3754 4016 1.557269 TTGCTCTCTGAAGCCCCTCC 61.557 60.000 8.61 0.00 41.77 4.30
3797 4067 9.274065 GAATTGACGATTGAAAATACCAGTAAC 57.726 33.333 0.00 0.00 0.00 2.50
3817 4087 1.798813 CGCGCCTTTTAGTCTGAAAGT 59.201 47.619 14.18 0.00 33.33 2.66
3819 4089 3.067833 GCGCCTTTTAGTCTGAAAGTCT 58.932 45.455 14.18 0.00 36.08 3.24
3847 4117 1.644509 AATGCAGTTTTCCTTCCCCC 58.355 50.000 0.00 0.00 0.00 5.40
3872 4142 7.363007 CCTTGTCTCTTGTTCTGCATAGTACTA 60.363 40.741 4.77 4.77 0.00 1.82
3873 4143 6.853720 TGTCTCTTGTTCTGCATAGTACTAC 58.146 40.000 4.31 0.00 0.00 2.73
3874 4144 6.659668 TGTCTCTTGTTCTGCATAGTACTACT 59.340 38.462 4.31 0.00 0.00 2.57
3875 4145 7.827729 TGTCTCTTGTTCTGCATAGTACTACTA 59.172 37.037 4.31 0.00 34.82 1.82
3876 4146 8.124199 GTCTCTTGTTCTGCATAGTACTACTAC 58.876 40.741 4.31 0.00 32.84 2.73
3877 4147 8.047911 TCTCTTGTTCTGCATAGTACTACTACT 58.952 37.037 4.31 0.00 32.84 2.57
3878 4148 7.986562 TCTTGTTCTGCATAGTACTACTACTG 58.013 38.462 4.31 0.62 32.84 2.74
3879 4149 7.610692 TCTTGTTCTGCATAGTACTACTACTGT 59.389 37.037 4.31 0.00 32.84 3.55
3880 4150 7.085052 TGTTCTGCATAGTACTACTACTGTG 57.915 40.000 4.31 0.00 42.32 3.66
3881 4151 6.657966 TGTTCTGCATAGTACTACTACTGTGT 59.342 38.462 4.31 0.00 41.76 3.72
3882 4152 7.825761 TGTTCTGCATAGTACTACTACTGTGTA 59.174 37.037 4.31 0.00 41.76 2.90
3883 4153 8.838365 GTTCTGCATAGTACTACTACTGTGTAT 58.162 37.037 4.31 0.00 41.76 2.29
3884 4154 8.975663 TCTGCATAGTACTACTACTGTGTATT 57.024 34.615 4.31 0.00 41.76 1.89
3885 4155 9.404848 TCTGCATAGTACTACTACTGTGTATTT 57.595 33.333 4.31 0.00 41.76 1.40
3901 4171 4.859400 TTTTTGACGGCGTGGAGA 57.141 50.000 21.19 0.00 0.00 3.71
3902 4172 2.612200 TTTTTGACGGCGTGGAGAG 58.388 52.632 21.19 0.00 0.00 3.20
3903 4173 0.179067 TTTTTGACGGCGTGGAGAGT 60.179 50.000 21.19 0.00 0.00 3.24
3904 4174 0.878523 TTTTGACGGCGTGGAGAGTG 60.879 55.000 21.19 0.00 0.00 3.51
3905 4175 2.709125 TTTGACGGCGTGGAGAGTGG 62.709 60.000 21.19 0.00 0.00 4.00
3906 4176 3.681835 GACGGCGTGGAGAGTGGT 61.682 66.667 21.19 0.00 0.00 4.16
3907 4177 3.628280 GACGGCGTGGAGAGTGGTC 62.628 68.421 21.19 0.00 0.00 4.02
3908 4178 4.436998 CGGCGTGGAGAGTGGTCC 62.437 72.222 0.00 0.00 37.10 4.46
3909 4179 2.997897 GGCGTGGAGAGTGGTCCT 60.998 66.667 0.00 0.00 37.52 3.85
3910 4180 2.584391 GGCGTGGAGAGTGGTCCTT 61.584 63.158 0.00 0.00 37.52 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.614241 CGGGATGGGAGGAGACGTTT 61.614 60.000 0.00 0.00 0.00 3.60
3 4 2.442272 ACGGGATGGGAGGAGACG 60.442 66.667 0.00 0.00 0.00 4.18
4 5 2.435693 CCACGGGATGGGAGGAGAC 61.436 68.421 0.00 0.00 45.95 3.36
5 6 2.041922 CCACGGGATGGGAGGAGA 60.042 66.667 0.00 0.00 45.95 3.71
13 14 0.601057 GGTTTTGGTTCCACGGGATG 59.399 55.000 0.00 0.00 0.00 3.51
14 15 0.481128 AGGTTTTGGTTCCACGGGAT 59.519 50.000 0.00 0.00 0.00 3.85
15 16 0.466555 CAGGTTTTGGTTCCACGGGA 60.467 55.000 0.00 0.00 0.00 5.14
16 17 2.037871 CAGGTTTTGGTTCCACGGG 58.962 57.895 0.00 0.00 0.00 5.28
17 18 1.362355 GCAGGTTTTGGTTCCACGG 59.638 57.895 0.00 0.00 0.00 4.94
18 19 1.362355 GGCAGGTTTTGGTTCCACG 59.638 57.895 0.00 0.00 0.00 4.94
19 20 1.745890 GGGCAGGTTTTGGTTCCAC 59.254 57.895 0.00 0.00 0.00 4.02
20 21 1.830408 CGGGCAGGTTTTGGTTCCA 60.830 57.895 0.00 0.00 0.00 3.53
21 22 1.529713 TCGGGCAGGTTTTGGTTCC 60.530 57.895 0.00 0.00 0.00 3.62
22 23 1.658114 GTCGGGCAGGTTTTGGTTC 59.342 57.895 0.00 0.00 0.00 3.62
23 24 2.190841 CGTCGGGCAGGTTTTGGTT 61.191 57.895 0.00 0.00 0.00 3.67
24 25 2.593436 CGTCGGGCAGGTTTTGGT 60.593 61.111 0.00 0.00 0.00 3.67
25 26 1.894756 TTCGTCGGGCAGGTTTTGG 60.895 57.895 0.00 0.00 0.00 3.28
26 27 1.281656 GTTCGTCGGGCAGGTTTTG 59.718 57.895 0.00 0.00 0.00 2.44
27 28 0.748729 TTGTTCGTCGGGCAGGTTTT 60.749 50.000 0.00 0.00 0.00 2.43
28 29 0.748729 TTTGTTCGTCGGGCAGGTTT 60.749 50.000 0.00 0.00 0.00 3.27
29 30 0.748729 TTTTGTTCGTCGGGCAGGTT 60.749 50.000 0.00 0.00 0.00 3.50
30 31 1.153127 TTTTGTTCGTCGGGCAGGT 60.153 52.632 0.00 0.00 0.00 4.00
31 32 1.281656 GTTTTGTTCGTCGGGCAGG 59.718 57.895 0.00 0.00 0.00 4.85
32 33 1.083015 CGTTTTGTTCGTCGGGCAG 60.083 57.895 0.00 0.00 0.00 4.85
33 34 2.535788 CCGTTTTGTTCGTCGGGCA 61.536 57.895 0.00 0.00 39.41 5.36
34 35 1.220817 TACCGTTTTGTTCGTCGGGC 61.221 55.000 7.34 0.00 46.06 6.13
35 36 0.508213 GTACCGTTTTGTTCGTCGGG 59.492 55.000 7.34 0.00 46.06 5.14
36 37 1.190763 CTGTACCGTTTTGTTCGTCGG 59.809 52.381 0.00 0.00 46.98 4.79
37 38 2.097733 GTCTGTACCGTTTTGTTCGTCG 60.098 50.000 0.00 0.00 0.00 5.12
38 39 2.859538 TGTCTGTACCGTTTTGTTCGTC 59.140 45.455 0.00 0.00 0.00 4.20
39 40 2.891112 TGTCTGTACCGTTTTGTTCGT 58.109 42.857 0.00 0.00 0.00 3.85
40 41 3.552699 TCTTGTCTGTACCGTTTTGTTCG 59.447 43.478 0.00 0.00 0.00 3.95
41 42 5.473796 TTCTTGTCTGTACCGTTTTGTTC 57.526 39.130 0.00 0.00 0.00 3.18
42 43 5.883503 TTTCTTGTCTGTACCGTTTTGTT 57.116 34.783 0.00 0.00 0.00 2.83
43 44 5.163693 CCTTTTCTTGTCTGTACCGTTTTGT 60.164 40.000 0.00 0.00 0.00 2.83
44 45 5.065474 TCCTTTTCTTGTCTGTACCGTTTTG 59.935 40.000 0.00 0.00 0.00 2.44
45 46 5.187687 TCCTTTTCTTGTCTGTACCGTTTT 58.812 37.500 0.00 0.00 0.00 2.43
46 47 4.773013 TCCTTTTCTTGTCTGTACCGTTT 58.227 39.130 0.00 0.00 0.00 3.60
47 48 4.141779 ACTCCTTTTCTTGTCTGTACCGTT 60.142 41.667 0.00 0.00 0.00 4.44
48 49 3.387050 ACTCCTTTTCTTGTCTGTACCGT 59.613 43.478 0.00 0.00 0.00 4.83
49 50 3.988517 GACTCCTTTTCTTGTCTGTACCG 59.011 47.826 0.00 0.00 0.00 4.02
50 51 4.040584 AGGACTCCTTTTCTTGTCTGTACC 59.959 45.833 0.00 0.00 0.00 3.34
51 52 5.216614 AGGACTCCTTTTCTTGTCTGTAC 57.783 43.478 0.00 0.00 0.00 2.90
52 53 8.696374 CATATAGGACTCCTTTTCTTGTCTGTA 58.304 37.037 1.94 0.00 34.61 2.74
53 54 7.400339 TCATATAGGACTCCTTTTCTTGTCTGT 59.600 37.037 1.94 0.00 34.61 3.41
54 55 7.786030 TCATATAGGACTCCTTTTCTTGTCTG 58.214 38.462 1.94 0.00 34.61 3.51
55 56 7.979786 TCATATAGGACTCCTTTTCTTGTCT 57.020 36.000 1.94 0.00 34.61 3.41
56 57 9.620259 AATTCATATAGGACTCCTTTTCTTGTC 57.380 33.333 1.94 0.00 34.61 3.18
57 58 9.981460 AAATTCATATAGGACTCCTTTTCTTGT 57.019 29.630 1.94 0.00 34.61 3.16
59 60 9.981460 ACAAATTCATATAGGACTCCTTTTCTT 57.019 29.630 1.94 0.00 34.61 2.52
62 63 9.853177 CCTACAAATTCATATAGGACTCCTTTT 57.147 33.333 1.94 0.00 37.02 2.27
63 64 9.225682 TCCTACAAATTCATATAGGACTCCTTT 57.774 33.333 1.94 0.00 38.61 3.11
64 65 8.798975 TCCTACAAATTCATATAGGACTCCTT 57.201 34.615 1.94 0.00 38.61 3.36
70 71 8.461854 TCCCTAGTCCTACAAATTCATATAGGA 58.538 37.037 0.00 0.00 40.73 2.94
71 72 8.666129 TCCCTAGTCCTACAAATTCATATAGG 57.334 38.462 0.00 0.00 36.32 2.57
75 76 9.627123 CAAAATCCCTAGTCCTACAAATTCATA 57.373 33.333 0.00 0.00 0.00 2.15
76 77 7.561356 CCAAAATCCCTAGTCCTACAAATTCAT 59.439 37.037 0.00 0.00 0.00 2.57
77 78 6.889722 CCAAAATCCCTAGTCCTACAAATTCA 59.110 38.462 0.00 0.00 0.00 2.57
78 79 6.321435 CCCAAAATCCCTAGTCCTACAAATTC 59.679 42.308 0.00 0.00 0.00 2.17
79 80 6.194967 CCCAAAATCCCTAGTCCTACAAATT 58.805 40.000 0.00 0.00 0.00 1.82
80 81 5.340863 CCCCAAAATCCCTAGTCCTACAAAT 60.341 44.000 0.00 0.00 0.00 2.32
81 82 4.017867 CCCCAAAATCCCTAGTCCTACAAA 60.018 45.833 0.00 0.00 0.00 2.83
82 83 3.526019 CCCCAAAATCCCTAGTCCTACAA 59.474 47.826 0.00 0.00 0.00 2.41
83 84 3.120108 CCCCAAAATCCCTAGTCCTACA 58.880 50.000 0.00 0.00 0.00 2.74
84 85 3.390819 TCCCCAAAATCCCTAGTCCTAC 58.609 50.000 0.00 0.00 0.00 3.18
85 86 3.807288 TCCCCAAAATCCCTAGTCCTA 57.193 47.619 0.00 0.00 0.00 2.94
86 87 2.680439 TCCCCAAAATCCCTAGTCCT 57.320 50.000 0.00 0.00 0.00 3.85
87 88 3.973472 AATCCCCAAAATCCCTAGTCC 57.027 47.619 0.00 0.00 0.00 3.85
88 89 5.138276 GGTTAATCCCCAAAATCCCTAGTC 58.862 45.833 0.00 0.00 0.00 2.59
89 90 4.385977 CGGTTAATCCCCAAAATCCCTAGT 60.386 45.833 0.00 0.00 0.00 2.57
90 91 4.141344 TCGGTTAATCCCCAAAATCCCTAG 60.141 45.833 0.00 0.00 0.00 3.02
91 92 3.787013 TCGGTTAATCCCCAAAATCCCTA 59.213 43.478 0.00 0.00 0.00 3.53
92 93 2.583566 TCGGTTAATCCCCAAAATCCCT 59.416 45.455 0.00 0.00 0.00 4.20
93 94 3.021177 TCGGTTAATCCCCAAAATCCC 57.979 47.619 0.00 0.00 0.00 3.85
94 95 4.647399 TCATTCGGTTAATCCCCAAAATCC 59.353 41.667 0.00 0.00 0.00 3.01
95 96 5.845391 TCATTCGGTTAATCCCCAAAATC 57.155 39.130 0.00 0.00 0.00 2.17
96 97 6.611236 AGATTCATTCGGTTAATCCCCAAAAT 59.389 34.615 0.00 0.00 31.35 1.82
97 98 5.955355 AGATTCATTCGGTTAATCCCCAAAA 59.045 36.000 0.00 0.00 31.35 2.44
98 99 5.515106 AGATTCATTCGGTTAATCCCCAAA 58.485 37.500 0.00 0.00 31.35 3.28
99 100 5.124036 AGATTCATTCGGTTAATCCCCAA 57.876 39.130 0.00 0.00 31.35 4.12
100 101 4.788925 AGATTCATTCGGTTAATCCCCA 57.211 40.909 0.00 0.00 31.35 4.96
101 102 6.771267 ACTTTAGATTCATTCGGTTAATCCCC 59.229 38.462 0.00 0.00 31.35 4.81
102 103 7.497909 TCACTTTAGATTCATTCGGTTAATCCC 59.502 37.037 0.00 0.00 31.35 3.85
103 104 8.336080 GTCACTTTAGATTCATTCGGTTAATCC 58.664 37.037 0.00 0.00 31.35 3.01
104 105 8.879759 TGTCACTTTAGATTCATTCGGTTAATC 58.120 33.333 0.00 0.00 0.00 1.75
105 106 8.786826 TGTCACTTTAGATTCATTCGGTTAAT 57.213 30.769 0.00 0.00 0.00 1.40
106 107 7.333423 CCTGTCACTTTAGATTCATTCGGTTAA 59.667 37.037 0.00 0.00 0.00 2.01
107 108 6.816640 CCTGTCACTTTAGATTCATTCGGTTA 59.183 38.462 0.00 0.00 0.00 2.85
108 109 5.643777 CCTGTCACTTTAGATTCATTCGGTT 59.356 40.000 0.00 0.00 0.00 4.44
109 110 5.178797 CCTGTCACTTTAGATTCATTCGGT 58.821 41.667 0.00 0.00 0.00 4.69
110 111 4.572389 CCCTGTCACTTTAGATTCATTCGG 59.428 45.833 0.00 0.00 0.00 4.30
111 112 5.419542 TCCCTGTCACTTTAGATTCATTCG 58.580 41.667 0.00 0.00 0.00 3.34
112 113 7.872113 AATCCCTGTCACTTTAGATTCATTC 57.128 36.000 0.00 0.00 0.00 2.67
113 114 8.772250 TCTAATCCCTGTCACTTTAGATTCATT 58.228 33.333 0.00 0.00 0.00 2.57
114 115 8.324191 TCTAATCCCTGTCACTTTAGATTCAT 57.676 34.615 0.00 0.00 0.00 2.57
115 116 7.733773 TCTAATCCCTGTCACTTTAGATTCA 57.266 36.000 0.00 0.00 0.00 2.57
116 117 7.713073 CCTTCTAATCCCTGTCACTTTAGATTC 59.287 40.741 0.00 0.00 31.13 2.52
117 118 7.403231 TCCTTCTAATCCCTGTCACTTTAGATT 59.597 37.037 0.00 0.00 31.13 2.40
118 119 6.903534 TCCTTCTAATCCCTGTCACTTTAGAT 59.096 38.462 0.00 0.00 31.13 1.98
119 120 6.261435 TCCTTCTAATCCCTGTCACTTTAGA 58.739 40.000 0.00 0.00 0.00 2.10
120 121 6.546428 TCCTTCTAATCCCTGTCACTTTAG 57.454 41.667 0.00 0.00 0.00 1.85
121 122 6.945636 TTCCTTCTAATCCCTGTCACTTTA 57.054 37.500 0.00 0.00 0.00 1.85
122 123 5.843019 TTCCTTCTAATCCCTGTCACTTT 57.157 39.130 0.00 0.00 0.00 2.66
123 124 5.843019 TTTCCTTCTAATCCCTGTCACTT 57.157 39.130 0.00 0.00 0.00 3.16
124 125 5.749462 CATTTCCTTCTAATCCCTGTCACT 58.251 41.667 0.00 0.00 0.00 3.41
125 126 4.336713 GCATTTCCTTCTAATCCCTGTCAC 59.663 45.833 0.00 0.00 0.00 3.67
126 127 4.018506 TGCATTTCCTTCTAATCCCTGTCA 60.019 41.667 0.00 0.00 0.00 3.58
127 128 4.526970 TGCATTTCCTTCTAATCCCTGTC 58.473 43.478 0.00 0.00 0.00 3.51
128 129 4.591321 TGCATTTCCTTCTAATCCCTGT 57.409 40.909 0.00 0.00 0.00 4.00
129 130 7.587037 TTATTGCATTTCCTTCTAATCCCTG 57.413 36.000 0.00 0.00 0.00 4.45
130 131 7.234166 CCATTATTGCATTTCCTTCTAATCCCT 59.766 37.037 0.00 0.00 0.00 4.20
131 132 7.381323 CCATTATTGCATTTCCTTCTAATCCC 58.619 38.462 0.00 0.00 0.00 3.85
132 133 7.381323 CCCATTATTGCATTTCCTTCTAATCC 58.619 38.462 0.00 0.00 0.00 3.01
133 134 7.233348 TCCCCATTATTGCATTTCCTTCTAATC 59.767 37.037 0.00 0.00 0.00 1.75
134 135 7.075148 TCCCCATTATTGCATTTCCTTCTAAT 58.925 34.615 0.00 0.00 0.00 1.73
135 136 6.439487 TCCCCATTATTGCATTTCCTTCTAA 58.561 36.000 0.00 0.00 0.00 2.10
136 137 6.024563 TCCCCATTATTGCATTTCCTTCTA 57.975 37.500 0.00 0.00 0.00 2.10
137 138 4.882559 TCCCCATTATTGCATTTCCTTCT 58.117 39.130 0.00 0.00 0.00 2.85
138 139 5.813513 ATCCCCATTATTGCATTTCCTTC 57.186 39.130 0.00 0.00 0.00 3.46
139 140 5.163174 CCAATCCCCATTATTGCATTTCCTT 60.163 40.000 0.00 0.00 33.80 3.36
140 141 4.348754 CCAATCCCCATTATTGCATTTCCT 59.651 41.667 0.00 0.00 33.80 3.36
141 142 4.505390 CCCAATCCCCATTATTGCATTTCC 60.505 45.833 0.00 0.00 33.80 3.13
142 143 4.102996 ACCCAATCCCCATTATTGCATTTC 59.897 41.667 0.00 0.00 33.80 2.17
143 144 4.046450 ACCCAATCCCCATTATTGCATTT 58.954 39.130 0.00 0.00 33.80 2.32
144 145 3.391955 CACCCAATCCCCATTATTGCATT 59.608 43.478 0.00 0.00 33.80 3.56
145 146 2.974099 CACCCAATCCCCATTATTGCAT 59.026 45.455 0.00 0.00 33.80 3.96
146 147 2.023598 TCACCCAATCCCCATTATTGCA 60.024 45.455 0.00 0.00 33.80 4.08
147 148 2.629617 CTCACCCAATCCCCATTATTGC 59.370 50.000 0.00 0.00 33.80 3.56
148 149 3.233507 CCTCACCCAATCCCCATTATTG 58.766 50.000 0.00 0.00 34.71 1.90
149 150 2.179865 CCCTCACCCAATCCCCATTATT 59.820 50.000 0.00 0.00 0.00 1.40
150 151 1.788915 CCCTCACCCAATCCCCATTAT 59.211 52.381 0.00 0.00 0.00 1.28
151 152 1.231018 CCCTCACCCAATCCCCATTA 58.769 55.000 0.00 0.00 0.00 1.90
152 153 1.593166 CCCCTCACCCAATCCCCATT 61.593 60.000 0.00 0.00 0.00 3.16
153 154 2.014550 CCCCTCACCCAATCCCCAT 61.015 63.158 0.00 0.00 0.00 4.00
154 155 2.616893 CCCCTCACCCAATCCCCA 60.617 66.667 0.00 0.00 0.00 4.96
155 156 3.429580 CCCCCTCACCCAATCCCC 61.430 72.222 0.00 0.00 0.00 4.81
156 157 2.617215 ACCCCCTCACCCAATCCC 60.617 66.667 0.00 0.00 0.00 3.85
157 158 2.683475 CACCCCCTCACCCAATCC 59.317 66.667 0.00 0.00 0.00 3.01
158 159 2.683475 CCACCCCCTCACCCAATC 59.317 66.667 0.00 0.00 0.00 2.67
159 160 2.946650 CCCACCCCCTCACCCAAT 60.947 66.667 0.00 0.00 0.00 3.16
160 161 4.542627 ACCCACCCCCTCACCCAA 62.543 66.667 0.00 0.00 0.00 4.12
163 164 3.647771 GACACCCACCCCCTCACC 61.648 72.222 0.00 0.00 0.00 4.02
164 165 2.852075 TGACACCCACCCCCTCAC 60.852 66.667 0.00 0.00 0.00 3.51
165 166 2.852075 GTGACACCCACCCCCTCA 60.852 66.667 0.00 0.00 39.86 3.86
172 173 1.830847 GGGGTTTGGTGACACCCAC 60.831 63.158 22.00 17.20 46.19 4.61
173 174 2.009882 AGGGGTTTGGTGACACCCA 61.010 57.895 22.00 8.39 46.19 4.51
174 175 1.530655 CAGGGGTTTGGTGACACCC 60.531 63.158 22.00 5.83 44.52 4.61
175 176 2.200337 GCAGGGGTTTGGTGACACC 61.200 63.158 18.28 18.28 43.74 4.16
176 177 2.551912 CGCAGGGGTTTGGTGACAC 61.552 63.158 0.00 0.00 42.67 3.67
177 178 2.203280 CGCAGGGGTTTGGTGACA 60.203 61.111 0.00 0.00 39.83 3.58
178 179 2.203294 ACGCAGGGGTTTGGTGAC 60.203 61.111 0.00 0.00 0.00 3.67
179 180 2.203280 CACGCAGGGGTTTGGTGA 60.203 61.111 0.00 0.00 0.00 4.02
180 181 3.294493 CCACGCAGGGGTTTGGTG 61.294 66.667 0.00 0.00 0.00 4.17
181 182 2.366153 AATCCACGCAGGGGTTTGGT 62.366 55.000 0.00 0.00 38.24 3.67
182 183 1.606313 AATCCACGCAGGGGTTTGG 60.606 57.895 0.00 0.00 38.24 3.28
183 184 0.893270 TCAATCCACGCAGGGGTTTG 60.893 55.000 11.90 11.90 36.75 2.93
184 185 0.178975 TTCAATCCACGCAGGGGTTT 60.179 50.000 0.00 0.00 38.24 3.27
185 186 0.039618 ATTCAATCCACGCAGGGGTT 59.960 50.000 0.00 0.00 38.24 4.11
186 187 0.394352 GATTCAATCCACGCAGGGGT 60.394 55.000 0.00 0.00 38.24 4.95
187 188 2.408333 GATTCAATCCACGCAGGGG 58.592 57.895 0.00 0.00 38.24 4.79
197 198 3.202151 TCAACCCCCTAGTGGATTCAATC 59.798 47.826 0.00 0.00 35.39 2.67
198 199 3.197983 TCAACCCCCTAGTGGATTCAAT 58.802 45.455 0.00 0.00 35.39 2.57
199 200 2.638325 TCAACCCCCTAGTGGATTCAA 58.362 47.619 0.00 0.00 35.39 2.69
200 201 2.352561 TCAACCCCCTAGTGGATTCA 57.647 50.000 0.00 0.00 35.39 2.57
201 202 3.459969 AGATTCAACCCCCTAGTGGATTC 59.540 47.826 0.00 0.00 35.39 2.52
202 203 3.459969 GAGATTCAACCCCCTAGTGGATT 59.540 47.826 0.00 0.00 35.39 3.01
203 204 3.049344 GAGATTCAACCCCCTAGTGGAT 58.951 50.000 0.00 0.00 35.39 3.41
204 205 2.478292 GAGATTCAACCCCCTAGTGGA 58.522 52.381 0.00 0.00 35.39 4.02
205 206 1.490910 GGAGATTCAACCCCCTAGTGG 59.509 57.143 0.00 0.00 0.00 4.00
206 207 2.196595 TGGAGATTCAACCCCCTAGTG 58.803 52.381 0.00 0.00 0.00 2.74
207 208 2.661176 TGGAGATTCAACCCCCTAGT 57.339 50.000 0.00 0.00 0.00 2.57
208 209 3.048600 TGATGGAGATTCAACCCCCTAG 58.951 50.000 0.00 0.00 0.00 3.02
209 210 3.144068 TGATGGAGATTCAACCCCCTA 57.856 47.619 0.00 0.00 0.00 3.53
210 211 1.985622 TGATGGAGATTCAACCCCCT 58.014 50.000 0.00 0.00 0.00 4.79
211 212 2.379005 GTTGATGGAGATTCAACCCCC 58.621 52.381 5.46 0.00 44.57 5.40
216 217 4.014569 TGTTCGGTTGATGGAGATTCAA 57.985 40.909 0.00 0.00 0.00 2.69
217 218 3.694043 TGTTCGGTTGATGGAGATTCA 57.306 42.857 0.00 0.00 0.00 2.57
218 219 3.375299 CCTTGTTCGGTTGATGGAGATTC 59.625 47.826 0.00 0.00 0.00 2.52
219 220 3.347216 CCTTGTTCGGTTGATGGAGATT 58.653 45.455 0.00 0.00 0.00 2.40
220 221 2.941415 GCCTTGTTCGGTTGATGGAGAT 60.941 50.000 0.00 0.00 0.00 2.75
221 222 1.610624 GCCTTGTTCGGTTGATGGAGA 60.611 52.381 0.00 0.00 0.00 3.71
222 223 0.804989 GCCTTGTTCGGTTGATGGAG 59.195 55.000 0.00 0.00 0.00 3.86
223 224 0.608035 GGCCTTGTTCGGTTGATGGA 60.608 55.000 0.00 0.00 0.00 3.41
224 225 0.609131 AGGCCTTGTTCGGTTGATGG 60.609 55.000 0.00 0.00 0.00 3.51
225 226 0.804989 GAGGCCTTGTTCGGTTGATG 59.195 55.000 6.77 0.00 0.00 3.07
226 227 0.400213 TGAGGCCTTGTTCGGTTGAT 59.600 50.000 6.77 0.00 0.00 2.57
227 228 0.181587 TTGAGGCCTTGTTCGGTTGA 59.818 50.000 6.77 0.00 0.00 3.18
228 229 0.593128 CTTGAGGCCTTGTTCGGTTG 59.407 55.000 6.77 0.00 0.00 3.77
229 230 0.537371 CCTTGAGGCCTTGTTCGGTT 60.537 55.000 6.77 0.00 0.00 4.44
230 231 1.073199 CCTTGAGGCCTTGTTCGGT 59.927 57.895 6.77 0.00 0.00 4.69
231 232 1.675641 CCCTTGAGGCCTTGTTCGG 60.676 63.158 6.77 3.49 0.00 4.30
232 233 1.675641 CCCCTTGAGGCCTTGTTCG 60.676 63.158 6.77 0.00 0.00 3.95
233 234 0.895559 CACCCCTTGAGGCCTTGTTC 60.896 60.000 6.77 0.00 0.00 3.18
234 235 1.153756 CACCCCTTGAGGCCTTGTT 59.846 57.895 6.77 0.00 0.00 2.83
235 236 2.845345 CCACCCCTTGAGGCCTTGT 61.845 63.158 6.77 0.00 0.00 3.16
236 237 2.036256 CCACCCCTTGAGGCCTTG 59.964 66.667 6.77 0.00 0.00 3.61
237 238 3.268032 CCCACCCCTTGAGGCCTT 61.268 66.667 6.77 0.00 0.00 4.35
242 243 4.052518 CAGCCCCCACCCCTTGAG 62.053 72.222 0.00 0.00 0.00 3.02
282 283 1.540267 CTTCAGGAGGTCGAGTCTGT 58.460 55.000 0.00 0.00 0.00 3.41
285 286 1.137825 CGCTTCAGGAGGTCGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
335 336 1.515954 GGATTCAGACGAGCCCGAA 59.484 57.895 0.00 0.00 39.50 4.30
336 337 2.771639 CGGATTCAGACGAGCCCGA 61.772 63.158 0.00 0.00 39.10 5.14
351 352 2.032528 CAAGGGCTTGTCTGCGGA 59.967 61.111 0.00 0.00 35.92 5.54
366 367 1.302431 CGTCCCACCACATGAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
367 368 2.213513 TCGTCCCACCACATGAGCA 61.214 57.895 0.00 0.00 0.00 4.26
370 371 1.873270 CTCGTCGTCCCACCACATGA 61.873 60.000 0.00 0.00 0.00 3.07
371 372 1.446099 CTCGTCGTCCCACCACATG 60.446 63.158 0.00 0.00 0.00 3.21
372 373 2.646175 CCTCGTCGTCCCACCACAT 61.646 63.158 0.00 0.00 0.00 3.21
373 374 3.299977 CCTCGTCGTCCCACCACA 61.300 66.667 0.00 0.00 0.00 4.17
374 375 3.300765 ACCTCGTCGTCCCACCAC 61.301 66.667 0.00 0.00 0.00 4.16
375 376 3.299977 CACCTCGTCGTCCCACCA 61.300 66.667 0.00 0.00 0.00 4.17
376 377 2.987547 TCACCTCGTCGTCCCACC 60.988 66.667 0.00 0.00 0.00 4.61
377 378 2.257676 GTCACCTCGTCGTCCCAC 59.742 66.667 0.00 0.00 0.00 4.61
378 379 2.114625 AGTCACCTCGTCGTCCCA 59.885 61.111 0.00 0.00 0.00 4.37
379 380 1.313812 ATCAGTCACCTCGTCGTCCC 61.314 60.000 0.00 0.00 0.00 4.46
380 381 0.099082 GATCAGTCACCTCGTCGTCC 59.901 60.000 0.00 0.00 0.00 4.79
382 383 1.645704 CCGATCAGTCACCTCGTCGT 61.646 60.000 0.00 0.00 0.00 4.34
383 384 1.062685 CCGATCAGTCACCTCGTCG 59.937 63.158 0.00 0.00 0.00 5.12
384 385 1.433879 CCCGATCAGTCACCTCGTC 59.566 63.158 0.00 0.00 0.00 4.20
387 388 3.095347 GCCCCCGATCAGTCACCTC 62.095 68.421 0.00 0.00 0.00 3.85
394 416 2.912542 TCGCTAGCCCCCGATCAG 60.913 66.667 9.66 0.00 0.00 2.90
411 433 1.425066 TCTTCTGTTTGCCTCCATGGT 59.575 47.619 12.58 0.00 38.35 3.55
422 444 1.985895 CACCCCCTACCTCTTCTGTTT 59.014 52.381 0.00 0.00 0.00 2.83
426 448 0.042881 GTCCACCCCCTACCTCTTCT 59.957 60.000 0.00 0.00 0.00 2.85
428 450 0.195096 TTGTCCACCCCCTACCTCTT 59.805 55.000 0.00 0.00 0.00 2.85
431 453 1.229853 CCTTGTCCACCCCCTACCT 60.230 63.158 0.00 0.00 0.00 3.08
438 460 4.678743 GGCCACCCTTGTCCACCC 62.679 72.222 0.00 0.00 0.00 4.61
439 461 3.897122 TGGCCACCCTTGTCCACC 61.897 66.667 0.00 0.00 0.00 4.61
440 462 2.597510 GTGGCCACCCTTGTCCAC 60.598 66.667 26.31 0.00 41.66 4.02
441 463 3.897122 GGTGGCCACCCTTGTCCA 61.897 66.667 40.65 0.00 45.68 4.02
456 478 2.765250 CTTGTCACTACGGCAGCGGT 62.765 60.000 10.84 10.84 0.00 5.68
461 483 2.345991 GCCCTTGTCACTACGGCA 59.654 61.111 0.00 0.00 39.50 5.69
466 488 1.536907 TTCCCCGCCCTTGTCACTA 60.537 57.895 0.00 0.00 0.00 2.74
471 493 3.966543 CACCTTCCCCGCCCTTGT 61.967 66.667 0.00 0.00 0.00 3.16
497 520 1.135112 TCCTCGTGTGTCAATCCGATG 60.135 52.381 0.00 0.00 0.00 3.84
509 532 2.283966 CCACCTCCCTCCTCGTGT 60.284 66.667 0.00 0.00 0.00 4.49
533 556 2.370281 TTCATCGCACACTCTTCTCC 57.630 50.000 0.00 0.00 0.00 3.71
535 558 2.061773 CGTTTCATCGCACACTCTTCT 58.938 47.619 0.00 0.00 0.00 2.85
546 569 0.919981 GCTCAGAGCTCGTTTCATCG 59.080 55.000 15.78 0.00 38.45 3.84
560 585 2.508887 GCGCAGTCAGAGGCTCAG 60.509 66.667 18.26 9.22 0.00 3.35
564 589 0.242017 AAAATTGCGCAGTCAGAGGC 59.758 50.000 11.31 0.00 0.00 4.70
565 590 2.712057 AAAAATTGCGCAGTCAGAGG 57.288 45.000 11.31 0.00 0.00 3.69
603 630 1.201424 GGGAGGTACGGGTCATCTTT 58.799 55.000 0.00 0.00 0.00 2.52
611 638 1.761271 GGAAGGAGGGAGGTACGGG 60.761 68.421 0.00 0.00 0.00 5.28
726 764 2.555670 CGTCTTATTTTGGGGGTGGGAA 60.556 50.000 0.00 0.00 0.00 3.97
815 854 0.547075 GAAGGTTTAGGGGGAGAGGC 59.453 60.000 0.00 0.00 0.00 4.70
853 932 3.900892 GCGGGAGAAGCGGATCGA 61.901 66.667 0.00 0.00 0.00 3.59
1223 1313 3.047877 GAAGGCCGTCGTGGTTGG 61.048 66.667 1.94 0.00 41.21 3.77
1259 1349 3.147595 CCTCCTCCATGCCGACGA 61.148 66.667 0.00 0.00 0.00 4.20
1325 1415 0.617413 CACAGGCACATCCTCCTTCT 59.383 55.000 0.00 0.00 45.52 2.85
1326 1416 0.393537 CCACAGGCACATCCTCCTTC 60.394 60.000 0.00 0.00 45.52 3.46
1347 1437 2.599281 TCCTCCTTGCCGACGACA 60.599 61.111 0.00 0.00 0.00 4.35
1841 2078 2.331805 CGGCGTCCCTCATCGTAG 59.668 66.667 0.00 0.00 0.00 3.51
1859 2096 2.687418 ATCCACCAGATCATGCGGCC 62.687 60.000 0.00 0.00 0.00 6.13
1896 2133 1.004628 CCACCCATCACATTCCACTCA 59.995 52.381 0.00 0.00 0.00 3.41
1947 2184 2.717485 CGCCTGAAATCCCATGCG 59.283 61.111 0.00 0.00 42.63 4.73
1950 2187 0.331278 TCAACCGCCTGAAATCCCAT 59.669 50.000 0.00 0.00 0.00 4.00
2094 2331 0.821711 CGTCTTTGGCAGGGTGGAAA 60.822 55.000 0.00 0.00 0.00 3.13
2097 2334 1.228124 TTCGTCTTTGGCAGGGTGG 60.228 57.895 0.00 0.00 0.00 4.61
2112 2349 3.641437 TGCCAAAGGAAAACATCTTCG 57.359 42.857 0.00 0.00 0.00 3.79
2115 2352 3.321968 GGTCTTGCCAAAGGAAAACATCT 59.678 43.478 0.00 0.00 37.17 2.90
2136 2373 1.045350 TCTCCAGGCTCCTCATTCGG 61.045 60.000 0.00 0.00 0.00 4.30
2137 2374 0.388659 CTCTCCAGGCTCCTCATTCG 59.611 60.000 0.00 0.00 0.00 3.34
2160 2397 0.445436 CTGCGAATGAGAACAGCCAC 59.555 55.000 0.00 0.00 0.00 5.01
2226 2463 2.303890 ACTTGATGTCCTGCACTGATCA 59.696 45.455 0.00 0.00 0.00 2.92
2257 2494 1.140852 TCCAAGGTCACACTCCAACAG 59.859 52.381 0.00 0.00 0.00 3.16
2337 2574 2.384933 AATCACCCTGGGGCTGCAAA 62.385 55.000 18.88 0.00 39.32 3.68
2478 2715 1.630369 CCACCTTCAGGGATGAAGACA 59.370 52.381 17.36 0.00 45.93 3.41
2532 2769 6.678568 ACATCTGGATGGATACTTCTTAGG 57.321 41.667 14.06 0.00 42.91 2.69
2553 2790 1.699083 TCCCTCATCTGCTTGACAACA 59.301 47.619 0.00 0.00 0.00 3.33
2685 2922 9.053840 TCTGAGATGATATCTTTTCTCAATTGC 57.946 33.333 22.49 6.58 42.81 3.56
2696 2933 7.936496 TCTTCGCTATCTGAGATGATATCTT 57.064 36.000 4.96 0.00 40.38 2.40
2732 2969 7.048629 TCATACTTCCAGCTATTCTCTTCAG 57.951 40.000 0.00 0.00 0.00 3.02
2768 3005 1.079127 CCGATTGTCCGCTGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
2769 3006 1.982395 TCCGATTGTCCGCTGTCCT 60.982 57.895 0.00 0.00 0.00 3.85
2770 3007 1.810030 GTCCGATTGTCCGCTGTCC 60.810 63.158 0.00 0.00 0.00 4.02
2784 3021 2.005960 GATCCCACTCGTGAGGTCCG 62.006 65.000 1.43 0.00 0.00 4.79
2793 3030 2.544694 CGAGAAGAATGGATCCCACTCG 60.545 54.545 9.90 15.05 34.68 4.18
2834 3071 3.010027 TGAATTACCAGAATCTGCACCCA 59.990 43.478 4.40 0.00 0.00 4.51
2930 3167 5.695816 GGATAGCTGTTTTGCTCATCTCTAG 59.304 44.000 0.00 0.00 42.97 2.43
3026 3263 1.064166 AGGGGCTGGATCATCAACAAG 60.064 52.381 0.00 0.00 0.00 3.16
3064 3301 3.207778 TCAAGGACTTTTGGTGGTAACG 58.792 45.455 0.00 0.00 42.51 3.18
3204 3442 5.280654 ACAGGACAGCAACAAAATTTGAT 57.719 34.783 13.19 0.00 0.00 2.57
3207 3445 5.936956 TGAAAACAGGACAGCAACAAAATTT 59.063 32.000 0.00 0.00 0.00 1.82
3314 3552 3.020237 GCCCGAGAGTCCCAGTTCC 62.020 68.421 0.00 0.00 0.00 3.62
3324 3563 1.079543 CCACTTGTCAGCCCGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
3356 3595 3.693807 ACACATTGACAATGATGGAGCT 58.306 40.909 30.23 7.20 41.46 4.09
3397 3636 0.545171 CATGATCCAGGCAGACAGGT 59.455 55.000 0.00 0.00 0.00 4.00
3425 3664 0.114954 AGTCCCACATGGCCACATTT 59.885 50.000 8.16 0.00 34.35 2.32
3499 3741 3.692257 ATGAGGAAACAGGACAGTGAG 57.308 47.619 0.00 0.00 0.00 3.51
3519 3761 6.017687 CAGCCTGATGAAATGAAATCACGATA 60.018 38.462 0.00 0.00 0.00 2.92
3522 3764 4.142534 ACAGCCTGATGAAATGAAATCACG 60.143 41.667 0.00 0.00 0.00 4.35
3526 3768 4.346730 TCCACAGCCTGATGAAATGAAAT 58.653 39.130 0.00 0.00 0.00 2.17
3548 3790 0.694771 TGGCACAGGAGCTCTGATTT 59.305 50.000 14.64 0.00 46.18 2.17
3583 3825 4.517285 TGTATCTTGGTGAAATCAGCTCC 58.483 43.478 13.17 0.00 44.12 4.70
3676 3935 1.407258 GTCTCATCCTTCGGACTCTGG 59.593 57.143 0.00 0.00 32.98 3.86
3701 3960 0.036388 TTAAGGAGCAGCCGGTTCTG 60.036 55.000 1.90 3.65 43.43 3.02
3754 4016 6.521133 CGTCAATTCTAACTTTTAGCAGCAAG 59.479 38.462 0.00 0.00 0.00 4.01
3789 4059 1.270465 ACTAAAAGGCGCGTTACTGGT 60.270 47.619 16.65 11.33 0.00 4.00
3797 4067 1.798813 ACTTTCAGACTAAAAGGCGCG 59.201 47.619 0.00 0.00 37.91 6.86
3847 4117 6.393990 AGTACTATGCAGAACAAGAGACAAG 58.606 40.000 0.00 0.00 0.00 3.16
3884 4154 0.179067 ACTCTCCACGCCGTCAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
3885 4155 0.878523 CACTCTCCACGCCGTCAAAA 60.879 55.000 0.00 0.00 0.00 2.44
3886 4156 1.300620 CACTCTCCACGCCGTCAAA 60.301 57.895 0.00 0.00 0.00 2.69
3887 4157 2.338620 CACTCTCCACGCCGTCAA 59.661 61.111 0.00 0.00 0.00 3.18
3888 4158 3.680786 CCACTCTCCACGCCGTCA 61.681 66.667 0.00 0.00 0.00 4.35
3889 4159 3.628280 GACCACTCTCCACGCCGTC 62.628 68.421 0.00 0.00 0.00 4.79
3890 4160 3.681835 GACCACTCTCCACGCCGT 61.682 66.667 0.00 0.00 0.00 5.68
3891 4161 4.436998 GGACCACTCTCCACGCCG 62.437 72.222 0.00 0.00 0.00 6.46
3892 4162 2.584391 AAGGACCACTCTCCACGCC 61.584 63.158 0.00 0.00 31.94 5.68
3893 4163 3.060866 AAGGACCACTCTCCACGC 58.939 61.111 0.00 0.00 31.94 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.