AutoCloner

Multiple sequence alignment - TraesCS4A01G408700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G408700	chr4A	100.000	3420	0	0	1	3420	681591914	681595333	0.000000e+00	6316.0
1	TraesCS4A01G408700	chr4A	91.137	1715	86	31	761	2461	681652845	681654507	0.000000e+00	2265.0
2	TraesCS4A01G408700	chr4A	86.862	921	102	14	2511	3420	654112743	654111831	0.000000e+00	1013.0
3	TraesCS4A01G408700	chr4B	90.728	1704	119	22	582	2272	599171093	599169416	0.000000e+00	2235.0
4	TraesCS4A01G408700	chr4B	89.624	1224	97	19	1055	2272	598914020	598912821	0.000000e+00	1530.0
5	TraesCS4A01G408700	chr4B	89.422	1021	74	10	1493	2497	598458866	598457864	0.000000e+00	1256.0
6	TraesCS4A01G408700	chr4B	87.310	922	99	16	2511	3420	642637800	642638715	0.000000e+00	1038.0
7	TraesCS4A01G408700	chr4B	91.754	570	41	5	4	568	598915205	598914637	0.000000e+00	787.0
8	TraesCS4A01G408700	chr4B	90.750	573	48	4	4	571	599171846	599171274	0.000000e+00	760.0
9	TraesCS4A01G408700	chr4B	90.609	575	44	7	4	568	598604555	598603981	0.000000e+00	754.0
10	TraesCS4A01G408700	chr4B	93.939	429	19	5	582	1004	598914456	598914029	2.880000e-180	641.0
11	TraesCS4A01G408700	chr4B	92.558	430	27	3	580	1004	598603800	598603371	2.260000e-171	612.0
12	TraesCS4A01G408700	chr4B	94.819	386	20	0	1063	1448	598459257	598458872	1.360000e-168	603.0
13	TraesCS4A01G408700	chr4B	93.250	400	21	4	1162	1561	598603090	598602697	4.920000e-163	584.0
14	TraesCS4A01G408700	chr4B	87.202	336	38	4	1648	1980	598602700	598602367	8.960000e-101	377.0
15	TraesCS4A01G408700	chr4B	91.266	229	20	0	2044	2272	598602348	598602120	2.560000e-81	313.0
16	TraesCS4A01G408700	chr4B	88.571	140	10	4	1034	1172	598603370	598603236	7.590000e-37	165.0
17	TraesCS4A01G408700	chr4D	90.047	1718	126	24	574	2272	474701879	474700188	0.000000e+00	2183.0
18	TraesCS4A01G408700	chr4D	88.807	947	73	23	2496	3420	269685206	269686141	0.000000e+00	1131.0
19	TraesCS4A01G408700	chr4D	93.119	654	37	3	2775	3420	482348243	482348896	0.000000e+00	952.0
20	TraesCS4A01G408700	chr4D	90.100	697	46	8	1780	2461	474602555	474601867	0.000000e+00	883.0
21	TraesCS4A01G408700	chr4D	88.759	685	47	10	1063	1747	474603215	474602561	0.000000e+00	811.0
22	TraesCS4A01G408700	chr4D	91.818	330	23	3	1	326	474702898	474702569	1.120000e-124	457.0
23	TraesCS4A01G408700	chr4D	90.726	248	20	3	323	568	474702305	474702059	9.150000e-86	327.0
24	TraesCS4A01G408700	chr4D	87.415	294	25	12	2497	2783	482347925	482348213	9.150000e-86	327.0
25	TraesCS4A01G408700	chr4D	86.557	305	27	13	2497	2792	269689905	269690204	1.180000e-84	324.0
26	TraesCS4A01G408700	chr4D	87.031	293	28	9	2497	2783	482352684	482352972	4.260000e-84	322.0
27	TraesCS4A01G408700	chr1D	89.597	942	69	16	2497	3420	458152702	458153632	0.000000e+00	1170.0
28	TraesCS4A01G408700	chr7A	89.175	933	77	14	2497	3420	467585435	467586352	0.000000e+00	1142.0
29	TraesCS4A01G408700	chr7A	85.758	330	31	10	2497	2815	467590126	467590450	5.470000e-88	335.0
30	TraesCS4A01G408700	chr7D	90.954	818	51	14	2623	3420	73147257	73148071	0.000000e+00	1079.0
31	TraesCS4A01G408700	chr7D	90.831	818	52	13	2623	3420	603785522	603784708	0.000000e+00	1074.0
32	TraesCS4A01G408700	chr5A	89.387	848	68	5	2595	3420	352809085	352809932	0.000000e+00	1048.0
33	TraesCS4A01G408700	chr7B	85.760	934	104	20	2511	3420	158928507	158929435	0.000000e+00	961.0
34	TraesCS4A01G408700	chr5D	88.119	303	22	12	2497	2790	487527150	487527447	7.020000e-92	348.0
35	TraesCS4A01G408700	chr3D	87.415	294	25	11	2497	2783	385391524	385391812	9.150000e-86	327.0
36	TraesCS4A01G408700	chrUn	89.344	244	23	3	327	568	103351189	103351431	1.540000e-78	303.0
37	TraesCS4A01G408700	chr1B	88.843	242	24	3	329	568	97326585	97326825	9.280000e-76	294.0
38	TraesCS4A01G408700	chr6A	88.525	244	25	3	327	568	29342847	29342605	3.340000e-75	292.0
39	TraesCS4A01G408700	chr5B	89.362	235	22	3	335	568	229823157	229822925	3.340000e-75	292.0
40	TraesCS4A01G408700	chr3B	76.443	641	92	34	1098	1727	13731862	13732454	3.340000e-75	292.0
41	TraesCS4A01G408700	chr6B	89.030	237	23	3	333	568	84861319	84861085	1.200000e-74	291.0
42	TraesCS4A01G408700	chr3A	75.232	646	92	37	1098	1732	11677531	11676943	9.480000e-61	244.0
43	TraesCS4A01G408700	chr3A	74.884	645	96	33	1098	1732	11704977	11704389	2.050000e-57	233.0
44	TraesCS4A01G408700	chr2B	83.871	93	14	1	171	262	717689371	717689279	1.690000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G408700	chr4A	681591914	681595333	3419	False	6316.000000	6316	100.000000	1	3420	1	chr4A.!!$F1	3419
1	TraesCS4A01G408700	chr4A	681652845	681654507	1662	False	2265.000000	2265	91.137000	761	2461	1	chr4A.!!$F2	1700
2	TraesCS4A01G408700	chr4A	654111831	654112743	912	True	1013.000000	1013	86.862000	2511	3420	1	chr4A.!!$R1	909
3	TraesCS4A01G408700	chr4B	599169416	599171846	2430	True	1497.500000	2235	90.739000	4	2272	2	chr4B.!!$R4	2268
4	TraesCS4A01G408700	chr4B	642637800	642638715	915	False	1038.000000	1038	87.310000	2511	3420	1	chr4B.!!$F1	909
5	TraesCS4A01G408700	chr4B	598912821	598915205	2384	True	986.000000	1530	91.772333	4	2272	3	chr4B.!!$R3	2268
6	TraesCS4A01G408700	chr4B	598457864	598459257	1393	True	929.500000	1256	92.120500	1063	2497	2	chr4B.!!$R1	1434
7	TraesCS4A01G408700	chr4B	598602120	598604555	2435	True	467.500000	754	90.576000	4	2272	6	chr4B.!!$R2	2268
8	TraesCS4A01G408700	chr4D	474700188	474702898	2710	True	989.000000	2183	90.863667	1	2272	3	chr4D.!!$R2	2271
9	TraesCS4A01G408700	chr4D	474601867	474603215	1348	True	847.000000	883	89.429500	1063	2461	2	chr4D.!!$R1	1398
10	TraesCS4A01G408700	chr4D	269685206	269690204	4998	False	727.500000	1131	87.682000	2496	3420	2	chr4D.!!$F1	924
11	TraesCS4A01G408700	chr4D	482347925	482352972	5047	False	533.666667	952	89.188333	2497	3420	3	chr4D.!!$F2	923
12	TraesCS4A01G408700	chr1D	458152702	458153632	930	False	1170.000000	1170	89.597000	2497	3420	1	chr1D.!!$F1	923
13	TraesCS4A01G408700	chr7A	467585435	467590450	5015	False	738.500000	1142	87.466500	2497	3420	2	chr7A.!!$F1	923
14	TraesCS4A01G408700	chr7D	73147257	73148071	814	False	1079.000000	1079	90.954000	2623	3420	1	chr7D.!!$F1	797
15	TraesCS4A01G408700	chr7D	603784708	603785522	814	True	1074.000000	1074	90.831000	2623	3420	1	chr7D.!!$R1	797
16	TraesCS4A01G408700	chr5A	352809085	352809932	847	False	1048.000000	1048	89.387000	2595	3420	1	chr5A.!!$F1	825
17	TraesCS4A01G408700	chr7B	158928507	158929435	928	False	961.000000	961	85.760000	2511	3420	1	chr7B.!!$F1	909
18	TraesCS4A01G408700	chr3B	13731862	13732454	592	False	292.000000	292	76.443000	1098	1727	1	chr3B.!!$F1	629
19	TraesCS4A01G408700	chr3A	11676943	11677531	588	True	244.000000	244	75.232000	1098	1732	1	chr3A.!!$R1	634
20	TraesCS4A01G408700	chr3A	11704389	11704977	588	True	233.000000	233	74.884000	1098	1732	1	chr3A.!!$R2	634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
603	1064	0.324614	ATGTCCTGATGCACCGTCAA	59.675	50.000	0.0	0.0	0.00	3.18	F
1312	1951	1.066587	CGATTCCTCGGAGCTGACC	59.933	63.158	0.0	0.0	41.27	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1860	2518	0.891373	CTCTTGGAGCTCCTTCACGA	59.109	55.0	32.28	18.75	36.82	4.35	R
2618	3305	1.221466	CTTGACCACGCGCAAGAGAA	61.221	55.0	16.23	0.00	43.11	2.87	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
112	115	2.488153	CAAGATGTTTCCTTTCCGTCCC	59.512	50.000	0.00	0.00	0.00	4.46
150	153	2.447244	ATATCTTCCACTGCGCTAGC	57.553	50.000	9.73	4.06	45.41	3.42
175	179	5.009610	TGCTAGCGTAGTGACATATCAATGA	59.990	40.000	10.77	0.00	36.31	2.57
200	205	5.475564	TGCTATCTTATGAGTGCCACGTATA	59.524	40.000	0.00	0.00	0.00	1.47
222	227	9.547753	GTATAATAAATGCTGAGTGAAGGAGAA	57.452	33.333	0.00	0.00	0.00	2.87
348	621	6.240145	AGTCTAAGATATACTCCCTCCGTTC	58.760	44.000	0.00	0.00	0.00	3.95
517	798	9.019542	AGGGGAGATATAATTTCCTTCTTTCTT	57.980	33.333	0.00	0.00	0.00	2.52
595	1056	4.342862	ACCAGTATACATGTCCTGATGC	57.657	45.455	17.20	4.47	0.00	3.91
600	1061	0.901827	TACATGTCCTGATGCACCGT	59.098	50.000	0.00	0.00	0.00	4.83
603	1064	0.324614	ATGTCCTGATGCACCGTCAA	59.675	50.000	0.00	0.00	0.00	3.18
632	1095	3.704061	AGTGTTTGGGCTTAGAAAAAGCA	59.296	39.130	11.47	0.00	44.71	3.91
634	1097	3.704061	TGTTTGGGCTTAGAAAAAGCAGT	59.296	39.130	11.47	0.00	44.71	4.40
656	1119	3.470709	AGCGCATCAATGTGTAGCTATT	58.529	40.909	11.47	0.00	40.29	1.73
663	1126	7.696035	CGCATCAATGTGTAGCTATTTAAAACA	59.304	33.333	0.00	0.00	33.79	2.83
713	1180	3.053831	ACTTTGGAAGATACACGTGGG	57.946	47.619	21.57	0.00	0.00	4.61
729	1196	1.282157	GTGGGTCCACTAATCCAGCTT	59.718	52.381	12.54	0.00	43.12	3.74
756	1223	6.590656	TGACCCTAATTTGGACAATAGGAT	57.409	37.500	7.57	0.00	0.00	3.24
799	1266	2.107950	TTGGTATTTCTGCCTCACCG	57.892	50.000	0.00	0.00	31.64	4.94
840	1309	6.038161	CCAGCGGTGTAGAATATCATTTTCAA	59.962	38.462	14.40	0.00	0.00	2.69
1025	1494	4.569761	TCGATCTTTAGGGATTCACTCG	57.430	45.455	0.00	0.00	0.00	4.18
1312	1951	1.066587	CGATTCCTCGGAGCTGACC	59.933	63.158	0.00	0.00	41.27	4.02
1326	1965	1.800805	CTGACCGAAGCACAGAACAT	58.199	50.000	0.00	0.00	32.79	2.71
1342	1981	1.068753	CATTCTGAGCTCCGGCGAT	59.931	57.895	9.30	0.00	44.37	4.58
1349	1988	4.451150	GCTCCGGCGATGACACCA	62.451	66.667	9.30	0.00	0.00	4.17
1462	2101	2.520260	CCCCCTGGCATTAGCAGC	60.520	66.667	0.00	0.00	44.61	5.25
1463	2102	2.276409	CCCCTGGCATTAGCAGCA	59.724	61.111	0.00	0.00	44.61	4.41
1464	2103	2.123428	CCCCTGGCATTAGCAGCAC	61.123	63.158	0.00	0.00	44.61	4.40
1682	2324	1.416401	GCCGGGAGAATATCAACCAGA	59.584	52.381	2.18	0.00	0.00	3.86
1750	2402	6.845446	TCATTGAATATGACAAATCCCCCAAT	59.155	34.615	0.00	0.00	0.00	3.16
1752	2404	6.029492	TGAATATGACAAATCCCCCAATCT	57.971	37.500	0.00	0.00	0.00	2.40
1755	2407	8.064389	TGAATATGACAAATCCCCCAATCTTTA	58.936	33.333	0.00	0.00	0.00	1.85
1852	2510	2.799540	GACGATTCTTGCCGACGCC	61.800	63.158	0.00	0.00	0.00	5.68
1857	2515	2.819984	ATTCTTGCCGACGCCACCAT	62.820	55.000	0.00	0.00	0.00	3.55
1860	2518	1.078072	TTGCCGACGCCACCATATT	60.078	52.632	0.00	0.00	0.00	1.28
1950	2608	2.210013	TGGTGCTCGTCAGGAAGCT	61.210	57.895	0.00	0.00	0.00	3.74
2036	2694	0.319405	AGCAATTGGAAACCAGCTGC	59.681	50.000	8.66	14.20	40.75	5.25
2037	2695	0.671472	GCAATTGGAAACCAGCTGCC	60.671	55.000	8.66	4.48	37.13	4.85
2038	2696	0.388907	CAATTGGAAACCAGCTGCCG	60.389	55.000	8.66	0.00	33.81	5.69
2039	2697	1.535204	AATTGGAAACCAGCTGCCGG	61.535	55.000	8.66	0.00	33.81	6.13
2040	2698	2.424842	ATTGGAAACCAGCTGCCGGA	62.425	55.000	5.05	0.00	33.81	5.14
2041	2699	2.747855	GGAAACCAGCTGCCGGAG	60.748	66.667	5.05	0.10	0.00	4.63
2068	2726	2.303549	ATCGAGGCAAAGCTCTCGGG	62.304	60.000	18.97	0.00	43.74	5.14
2084	2742	1.890625	CGGGGGACAACGTCATGGTA	61.891	60.000	0.00	0.00	33.68	3.25
2101	2759	4.015872	TGGTAAGGATCCACTGTGAAAC	57.984	45.455	15.82	0.00	37.35	2.78
2220	2878	2.620115	GTGATCATAACCACCATGGCAG	59.380	50.000	13.04	5.77	42.67	4.85
2232	2890	1.679680	CCATGGCAGAGGCAAGTTATG	59.320	52.381	0.00	0.00	42.43	1.90
2235	2893	2.646930	TGGCAGAGGCAAGTTATGATG	58.353	47.619	0.00	0.00	43.71	3.07
2276	2940	2.668945	CGTTATCCACGTATGCACACAA	59.331	45.455	0.00	0.00	44.49	3.33
2379	3052	0.039618	AGGGGTGTGCCATTGTTAGG	59.960	55.000	0.00	0.00	36.17	2.69
2407	3089	9.979270	CATGTCTACAGCTCAAACTAATAAAAG	57.021	33.333	0.00	0.00	0.00	2.27
2493	3176	5.473931	TGTGGAGAATTTTCTTCTCTCTCG	58.526	41.667	13.09	0.00	43.28	4.04
2509	3192	7.640597	TCTCTCTCGTATGTTGGAAATTCTA	57.359	36.000	0.00	0.00	0.00	2.10
2618	3305	3.626670	CAGTAGCTAGGTAGTTAGCACGT	59.373	47.826	6.56	0.00	46.69	4.49
2621	3308	3.354467	AGCTAGGTAGTTAGCACGTTCT	58.646	45.455	7.66	0.00	46.69	3.01
2746	3443	5.948992	AGAAACAGAAAATGCTACAGGTC	57.051	39.130	0.00	0.00	0.00	3.85
2748	3445	2.699954	ACAGAAAATGCTACAGGTCGG	58.300	47.619	0.00	0.00	0.00	4.79
2870	3636	4.980805	GTTGGCGGACGAGGTGCA	62.981	66.667	0.00	0.00	0.00	4.57
3393	4169	4.275196	GGGACACACTTGAAGAGGTAAAAC	59.725	45.833	0.00	0.00	0.00	2.43

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	4.254492	GTGACCCTCACTAATTCTTGTCC	58.746	47.826	0.00	0.00	43.73	4.02
83	84	2.519013	AGGAAACATCTTGTCTTGGGC	58.481	47.619	0.00	0.00	0.00	5.36
112	115	2.691409	TAAGTGGGAAGAAGATGGCG	57.309	50.000	0.00	0.00	0.00	5.69
150	153	4.489679	TGATATGTCACTACGCTAGCAG	57.510	45.455	16.45	8.08	0.00	4.24
175	179	3.070159	ACGTGGCACTCATAAGATAGCAT	59.930	43.478	16.72	0.00	0.00	3.79
200	205	7.170965	TCTTTCTCCTTCACTCAGCATTTATT	58.829	34.615	0.00	0.00	0.00	1.40
296	302	9.628500	ATCTCTCATAACCAAATAACCCTAAAC	57.372	33.333	0.00	0.00	0.00	2.01
300	306	9.004231	ACTTATCTCTCATAACCAAATAACCCT	57.996	33.333	0.00	0.00	0.00	4.34
376	652	2.039818	TTGTTGCCTTGTTCACCGTA	57.960	45.000	0.00	0.00	0.00	4.02
429	705	9.777297	ATTTACTGCCAGTAATCAACAAATTTT	57.223	25.926	17.50	0.00	40.08	1.82
571	853	5.590259	GCATCAGGACATGTATACTGGTTTT	59.410	40.000	18.88	5.34	0.00	2.43
572	854	5.126067	GCATCAGGACATGTATACTGGTTT	58.874	41.667	18.88	7.10	0.00	3.27
574	856	3.711190	TGCATCAGGACATGTATACTGGT	59.289	43.478	18.88	12.59	0.00	4.00
575	857	4.060900	GTGCATCAGGACATGTATACTGG	58.939	47.826	18.88	9.35	35.94	4.00
578	1039	3.059884	CGGTGCATCAGGACATGTATAC	58.940	50.000	0.00	0.00	37.91	1.47
587	1048	2.905075	CTAATTGACGGTGCATCAGGA	58.095	47.619	0.00	0.00	0.00	3.86
591	1052	3.246226	CACTAGCTAATTGACGGTGCATC	59.754	47.826	0.00	0.00	0.00	3.91
595	1056	4.142902	CCAAACACTAGCTAATTGACGGTG	60.143	45.833	8.65	7.14	0.00	4.94
600	1061	4.301072	AGCCCAAACACTAGCTAATTGA	57.699	40.909	8.65	0.00	32.73	2.57
603	1064	5.693769	TCTAAGCCCAAACACTAGCTAAT	57.306	39.130	0.00	0.00	34.49	1.73
632	1095	2.159043	AGCTACACATTGATGCGCTACT	60.159	45.455	9.73	0.00	30.48	2.57
634	1097	2.602257	AGCTACACATTGATGCGCTA	57.398	45.000	9.73	0.00	30.48	4.26
713	1180	3.118261	TCATGGAAGCTGGATTAGTGGAC	60.118	47.826	0.00	0.00	0.00	4.02
729	1196	4.666412	TTGTCCAAATTAGGGTCATGGA	57.334	40.909	0.00	0.00	37.83	3.41
756	1223	9.166173	CAAATTTCCTGATGTGTATCTTGACTA	57.834	33.333	0.00	0.00	34.31	2.59
840	1309	2.224967	GGCTTATCTTGCCTGGATCCAT	60.225	50.000	16.63	0.18	46.38	3.41
1025	1494	5.571778	CGATAGTAATTGTTTACCTCGGC	57.428	43.478	9.07	0.00	38.75	5.54
1326	1965	2.052104	TCATCGCCGGAGCTCAGAA	61.052	57.895	17.19	1.02	36.60	3.02
1349	1988	4.162690	GATTCCTCCACCGCCGCT	62.163	66.667	0.00	0.00	0.00	5.52
1448	2087	2.475466	CGGTGCTGCTAATGCCAGG	61.475	63.158	0.00	0.00	38.71	4.45
1450	2089	2.438254	CCGGTGCTGCTAATGCCA	60.438	61.111	0.00	0.00	38.71	4.92
1672	2314	3.491619	GCTCGATGAAGCTCTGGTTGATA	60.492	47.826	0.00	0.00	39.27	2.15
1727	2369	7.077745	AGATTGGGGGATTTGTCATATTCAAT	58.922	34.615	0.00	0.00	0.00	2.57
1737	2379	6.147437	TGTAGTAAAGATTGGGGGATTTGT	57.853	37.500	0.00	0.00	0.00	2.83
1755	2407	9.170890	TCCTGGAGGAATATTATGAAATGTAGT	57.829	33.333	0.00	0.00	42.18	2.73
1776	2431	3.855689	AATTGATGAAGCGTTTCCTGG	57.144	42.857	9.65	0.00	32.09	4.45
1784	2439	6.808212	AGTAATTGAACCAAATTGATGAAGCG	59.192	34.615	0.00	0.00	32.16	4.68
1789	2444	8.830201	TCCAAAGTAATTGAACCAAATTGATG	57.170	30.769	0.00	0.00	41.85	3.07
1812	2470	2.289320	CCCTTGTCCATCTGATCGATCC	60.289	54.545	22.31	5.84	0.00	3.36
1852	2510	3.126831	GAGCTCCTTCACGAATATGGTG	58.873	50.000	0.87	1.65	36.74	4.17
1857	2515	3.096852	TCTTGGAGCTCCTTCACGAATA	58.903	45.455	32.28	6.94	36.82	1.75
1860	2518	0.891373	CTCTTGGAGCTCCTTCACGA	59.109	55.000	32.28	18.75	36.82	4.35
2038	2696	3.299190	CCTCGATCTCCGGGCTCC	61.299	72.222	0.00	0.00	37.45	4.70
2039	2697	3.984749	GCCTCGATCTCCGGGCTC	61.985	72.222	0.00	0.00	45.17	4.70
2042	2700	1.227380	CTTTGCCTCGATCTCCGGG	60.227	63.158	0.00	0.00	39.14	5.73
2068	2726	1.276989	TCCTTACCATGACGTTGTCCC	59.723	52.381	0.00	0.00	0.00	4.46
2084	2742	4.281688	CCATTTGTTTCACAGTGGATCCTT	59.718	41.667	14.23	0.00	37.69	3.36
2101	2759	3.507622	GGAGACCAGACCTTTTCCATTTG	59.492	47.826	0.00	0.00	0.00	2.32
2220	2878	9.632807	CTAGTATTACTCATCATAACTTGCCTC	57.367	37.037	0.00	0.00	0.00	4.70
2232	2890	4.506886	ACGCCAGCTAGTATTACTCATC	57.493	45.455	0.00	0.00	0.00	2.92
2235	2893	3.249559	ACGTACGCCAGCTAGTATTACTC	59.750	47.826	16.72	0.00	0.00	2.59
2276	2940	4.202441	AGCTAACGATTCCAATTGAGCAT	58.798	39.130	7.12	0.00	0.00	3.79
2379	3052	8.703604	TTATTAGTTTGAGCTGTAGACATGTC	57.296	34.615	18.47	18.47	0.00	3.06
2407	3089	2.346803	AGATGCATACGTCCACAACAC	58.653	47.619	0.00	0.00	31.66	3.32
2465	3148	7.557719	AGAGAGAAGAAAATTCTCCACAAAACA	59.442	33.333	12.72	0.00	44.46	2.83
2466	3149	7.935520	AGAGAGAAGAAAATTCTCCACAAAAC	58.064	34.615	12.72	0.00	44.46	2.43
2472	3155	5.730296	ACGAGAGAGAAGAAAATTCTCCA	57.270	39.130	12.72	0.00	44.46	3.86
2509	3192	4.737855	ACAACTAGTGCGACAGGATTAT	57.262	40.909	0.00	0.00	0.00	1.28
2618	3305	1.221466	CTTGACCACGCGCAAGAGAA	61.221	55.000	16.23	0.00	43.11	2.87
2621	3308	2.449031	ATCCTTGACCACGCGCAAGA	62.449	55.000	21.04	10.63	43.11	3.02
2654	3342	1.524621	CATGACCAGGCTAAGCGGG	60.525	63.158	0.00	0.00	0.00	6.13
2664	3352	1.600957	CTAATCTTGCGCCATGACCAG	59.399	52.381	4.18	0.00	0.00	4.00
2720	3410	6.205658	ACCTGTAGCATTTTCTGTTTCTTCTC	59.794	38.462	0.00	0.00	0.00	2.87
2721	3411	6.064717	ACCTGTAGCATTTTCTGTTTCTTCT	58.935	36.000	0.00	0.00	0.00	2.85
2736	3432	2.986979	TGCGTCCGACCTGTAGCA	60.987	61.111	0.00	0.00	0.00	3.49
2737	3433	2.202623	CTGCGTCCGACCTGTAGC	60.203	66.667	0.00	0.00	0.00	3.58
2738	3434	2.202623	GCTGCGTCCGACCTGTAG	60.203	66.667	0.00	0.00	0.00	2.74
2739	3435	4.111016	CGCTGCGTCCGACCTGTA	62.111	66.667	14.93	0.00	0.00	2.74
2748	3445	2.127232	GAGGTTTTGCGCTGCGTC	60.127	61.111	24.04	15.82	0.00	5.19
2854	3620	4.980805	GTGCACCTCGTCCGCCAA	62.981	66.667	5.22	0.00	0.00	4.52
2887	3653	4.408821	GCTGATCCACCACCGGCA	62.409	66.667	0.00	0.00	32.73	5.69
2956	3725	1.863662	GCTCTCTCGGACGACCACAA	61.864	60.000	4.48	0.00	35.59	3.33
3362	4131	3.222354	AAGTGTGTCCCCGAGCGAC	62.222	63.158	0.00	0.00	0.00	5.19

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.