Multiple sequence alignment - TraesCS4A01G408600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G408600 chr4A 100.000 6727 0 0 1 6727 681359663 681366389 0.000000e+00 12423
1 TraesCS4A01G408600 chr4A 84.940 498 60 8 161 655 722203752 722203267 2.180000e-134 490
2 TraesCS4A01G408600 chr4A 93.515 293 14 2 6403 6695 681614554 681614841 1.340000e-116 431
3 TraesCS4A01G408600 chr4D 97.112 3670 82 14 3043 6695 474858357 474854695 0.000000e+00 6168
4 TraesCS4A01G408600 chr4D 94.107 1646 51 13 1445 3048 474860056 474858415 0.000000e+00 2460
5 TraesCS4A01G408600 chr4D 85.009 567 21 12 745 1297 474860876 474860360 1.000000e-142 518
6 TraesCS4A01G408600 chr4B 96.420 3659 101 12 3044 6695 599230129 599226494 0.000000e+00 6004
7 TraesCS4A01G408600 chr4B 94.043 1662 59 13 1422 3048 599232425 599230769 0.000000e+00 2484
8 TraesCS4A01G408600 chr4B 83.665 502 67 10 162 657 86132872 86132380 6.150000e-125 459
9 TraesCS4A01G408600 chr4B 94.138 290 16 1 2760 3048 599230667 599230378 2.230000e-119 440
10 TraesCS4A01G408600 chr4B 84.524 420 54 8 1675 2084 243847332 243846914 8.120000e-109 405
11 TraesCS4A01G408600 chr4B 89.437 142 14 1 1929 2069 311411116 311411257 1.930000e-40 178
12 TraesCS4A01G408600 chr6B 90.964 498 30 5 1422 1904 146382090 146382587 0.000000e+00 656
13 TraesCS4A01G408600 chr6B 88.441 372 34 3 175 537 700510236 700510607 2.230000e-119 440
14 TraesCS4A01G408600 chr6B 98.485 66 1 0 1325 1390 146382025 146382090 4.260000e-22 117
15 TraesCS4A01G408600 chr2D 89.130 506 44 4 162 657 38059483 38059987 2.660000e-173 619
16 TraesCS4A01G408600 chr2D 83.596 445 57 10 161 592 176560862 176561303 2.920000e-108 403
17 TraesCS4A01G408600 chr2D 96.667 150 5 0 1 150 595752494 595752345 4.030000e-62 250
18 TraesCS4A01G408600 chr2A 87.921 505 51 4 163 657 704010780 704011284 2.700000e-163 586
19 TraesCS4A01G408600 chr2A 81.818 154 26 1 504 657 102116089 102116240 1.970000e-25 128
20 TraesCS4A01G408600 chr2B 87.795 508 49 6 161 657 481875606 481875101 3.500000e-162 582
21 TraesCS4A01G408600 chr2B 85.646 418 51 6 1675 2084 193138459 193138043 1.340000e-116 431
22 TraesCS4A01G408600 chr2B 81.010 416 57 19 1675 2069 409251147 409251561 1.820000e-80 311
23 TraesCS4A01G408600 chr5A 87.921 505 45 6 162 657 24413449 24412952 1.260000e-161 580
24 TraesCS4A01G408600 chr5A 83.107 515 67 10 160 658 151249338 151249848 1.030000e-122 451
25 TraesCS4A01G408600 chr5A 95.973 149 6 0 2 150 272546497 272546349 6.740000e-60 243
26 TraesCS4A01G408600 chr3B 86.337 505 59 4 162 657 20811936 20812439 5.930000e-150 542
27 TraesCS4A01G408600 chr1B 83.037 507 65 13 161 657 671544202 671544697 2.230000e-119 440
28 TraesCS4A01G408600 chr7A 97.279 147 4 0 1 147 552706799 552706945 4.030000e-62 250
29 TraesCS4A01G408600 chr7A 95.973 149 6 0 2 150 99548648 99548500 6.740000e-60 243
30 TraesCS4A01G408600 chr6A 96.599 147 5 0 1 147 93103281 93103427 1.870000e-60 244
31 TraesCS4A01G408600 chr6A 92.308 169 11 2 1 168 47336322 47336155 8.720000e-59 239
32 TraesCS4A01G408600 chr5B 96.599 147 5 0 1 147 387723471 387723617 1.870000e-60 244
33 TraesCS4A01G408600 chr3A 96.000 150 6 0 1 150 476912572 476912423 1.870000e-60 244
34 TraesCS4A01G408600 chr1A 93.711 159 10 0 2 160 489381147 489381305 8.720000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G408600 chr4A 681359663 681366389 6726 False 12423.000000 12423 100.0000 1 6727 1 chr4A.!!$F1 6726
1 TraesCS4A01G408600 chr4D 474854695 474860876 6181 True 3048.666667 6168 92.0760 745 6695 3 chr4D.!!$R1 5950
2 TraesCS4A01G408600 chr4B 599226494 599232425 5931 True 2976.000000 6004 94.8670 1422 6695 3 chr4B.!!$R3 5273
3 TraesCS4A01G408600 chr6B 146382025 146382587 562 False 386.500000 656 94.7245 1325 1904 2 chr6B.!!$F2 579
4 TraesCS4A01G408600 chr2D 38059483 38059987 504 False 619.000000 619 89.1300 162 657 1 chr2D.!!$F1 495
5 TraesCS4A01G408600 chr2A 704010780 704011284 504 False 586.000000 586 87.9210 163 657 1 chr2A.!!$F2 494
6 TraesCS4A01G408600 chr2B 481875101 481875606 505 True 582.000000 582 87.7950 161 657 1 chr2B.!!$R2 496
7 TraesCS4A01G408600 chr5A 151249338 151249848 510 False 451.000000 451 83.1070 160 658 1 chr5A.!!$F1 498
8 TraesCS4A01G408600 chr3B 20811936 20812439 503 False 542.000000 542 86.3370 162 657 1 chr3B.!!$F1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 700 0.033405 TAGGTAAGTCTGGCCTCGCT 60.033 55.000 3.32 0.0 34.07 4.93 F
1299 1327 0.035820 TTGGTACCCGTGATGCTTCC 60.036 55.000 10.07 0.0 0.00 3.46 F
1315 1343 0.334676 TTCCTGGTTGCATTAGGGGG 59.665 55.000 10.44 0.0 32.39 5.40 F
2848 3500 2.029470 CCTTAGCTATCCTCGCTTCTGG 60.029 54.545 0.00 0.0 38.86 3.86 F
4048 4955 1.348064 TGGACGAAGAGGTGGTCATT 58.652 50.000 0.00 0.0 36.72 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1741 0.179051 GGCCCAGATCTTCTGCAGAG 60.179 60.000 17.43 11.30 42.98 3.35 R
2711 2972 1.070604 CCCATGTAGATGCCTCCCAT 58.929 55.000 0.00 0.00 36.70 4.00 R
3140 4047 3.057315 ACATGTGCTGCAGTTCCATTAAC 60.057 43.478 16.64 2.33 38.46 2.01 R
4614 5524 0.965439 TTGGTTTACAGCATGCACCC 59.035 50.000 21.98 10.07 42.53 4.61 R
5732 6642 0.171455 AGAGTAACAGAAGCGGCGAG 59.829 55.000 12.98 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.483307 CAATTGCCACTCTAAAATTATTGCTT 57.517 30.769 0.00 0.00 0.00 3.91
26 27 8.938906 CAATTGCCACTCTAAAATTATTGCTTT 58.061 29.630 0.00 0.00 0.00 3.51
27 28 9.506018 AATTGCCACTCTAAAATTATTGCTTTT 57.494 25.926 0.00 0.00 0.00 2.27
28 29 7.887996 TGCCACTCTAAAATTATTGCTTTTG 57.112 32.000 0.00 0.00 0.00 2.44
30 31 6.183360 GCCACTCTAAAATTATTGCTTTTGCC 60.183 38.462 0.00 0.00 46.87 4.52
31 32 6.873076 CCACTCTAAAATTATTGCTTTTGCCA 59.127 34.615 0.00 0.00 46.87 4.92
32 33 7.148590 CCACTCTAAAATTATTGCTTTTGCCAC 60.149 37.037 0.00 0.00 46.87 5.01
33 34 6.586082 ACTCTAAAATTATTGCTTTTGCCACG 59.414 34.615 0.00 0.00 46.87 4.94
34 35 5.866633 TCTAAAATTATTGCTTTTGCCACGG 59.133 36.000 0.00 0.00 46.87 4.94
35 36 3.951775 AATTATTGCTTTTGCCACGGA 57.048 38.095 0.00 0.00 46.87 4.69
36 37 3.951775 ATTATTGCTTTTGCCACGGAA 57.048 38.095 0.00 0.00 46.87 4.30
37 38 3.951775 TTATTGCTTTTGCCACGGAAT 57.048 38.095 0.00 0.00 46.87 3.01
38 39 2.083167 ATTGCTTTTGCCACGGAATG 57.917 45.000 0.00 0.00 46.87 2.67
39 40 1.035923 TTGCTTTTGCCACGGAATGA 58.964 45.000 0.00 0.00 46.87 2.57
40 41 0.313672 TGCTTTTGCCACGGAATGAC 59.686 50.000 0.00 0.00 46.87 3.06
41 42 0.313672 GCTTTTGCCACGGAATGACA 59.686 50.000 0.00 0.00 40.15 3.58
42 43 1.269517 GCTTTTGCCACGGAATGACAA 60.270 47.619 0.00 0.00 40.15 3.18
43 44 2.610232 GCTTTTGCCACGGAATGACAAT 60.610 45.455 0.00 0.00 40.15 2.71
44 45 3.652274 CTTTTGCCACGGAATGACAATT 58.348 40.909 0.00 0.00 0.00 2.32
45 46 2.721274 TTGCCACGGAATGACAATTG 57.279 45.000 3.24 3.24 0.00 2.32
46 47 1.614996 TGCCACGGAATGACAATTGT 58.385 45.000 11.78 11.78 0.00 2.71
47 48 1.269174 TGCCACGGAATGACAATTGTG 59.731 47.619 17.58 2.57 0.00 3.33
48 49 1.539388 GCCACGGAATGACAATTGTGA 59.461 47.619 17.58 8.31 0.00 3.58
49 50 2.164219 GCCACGGAATGACAATTGTGAT 59.836 45.455 17.58 10.77 0.00 3.06
50 51 3.761657 CCACGGAATGACAATTGTGATG 58.238 45.455 17.58 4.05 0.00 3.07
51 52 3.191162 CCACGGAATGACAATTGTGATGT 59.809 43.478 17.58 4.73 0.00 3.06
52 53 4.394610 CCACGGAATGACAATTGTGATGTA 59.605 41.667 17.58 0.00 0.00 2.29
53 54 5.066375 CCACGGAATGACAATTGTGATGTAT 59.934 40.000 17.58 0.00 0.00 2.29
54 55 6.404623 CCACGGAATGACAATTGTGATGTATT 60.405 38.462 17.58 8.32 0.00 1.89
55 56 6.469915 CACGGAATGACAATTGTGATGTATTG 59.530 38.462 17.58 5.78 37.67 1.90
56 57 6.150976 ACGGAATGACAATTGTGATGTATTGT 59.849 34.615 17.58 5.91 45.07 2.71
70 71 9.337396 TGTGATGTATTGTCAAAAACTAAGAGT 57.663 29.630 0.00 0.00 0.00 3.24
71 72 9.599322 GTGATGTATTGTCAAAAACTAAGAGTG 57.401 33.333 0.00 0.00 0.00 3.51
72 73 8.783093 TGATGTATTGTCAAAAACTAAGAGTGG 58.217 33.333 0.00 0.00 0.00 4.00
73 74 6.966021 TGTATTGTCAAAAACTAAGAGTGGC 58.034 36.000 0.00 0.00 0.00 5.01
74 75 6.544197 TGTATTGTCAAAAACTAAGAGTGGCA 59.456 34.615 0.00 0.00 0.00 4.92
75 76 5.906113 TTGTCAAAAACTAAGAGTGGCAA 57.094 34.783 0.00 0.00 31.76 4.52
76 77 5.906113 TGTCAAAAACTAAGAGTGGCAAA 57.094 34.783 0.00 0.00 0.00 3.68
77 78 6.274157 TGTCAAAAACTAAGAGTGGCAAAA 57.726 33.333 0.00 0.00 0.00 2.44
78 79 6.692486 TGTCAAAAACTAAGAGTGGCAAAAA 58.308 32.000 0.00 0.00 0.00 1.94
79 80 7.327214 TGTCAAAAACTAAGAGTGGCAAAAAT 58.673 30.769 0.00 0.00 0.00 1.82
80 81 7.277539 TGTCAAAAACTAAGAGTGGCAAAAATG 59.722 33.333 0.00 0.00 0.00 2.32
81 82 7.491048 GTCAAAAACTAAGAGTGGCAAAAATGA 59.509 33.333 0.00 0.00 0.00 2.57
82 83 8.037758 TCAAAAACTAAGAGTGGCAAAAATGAA 58.962 29.630 0.00 0.00 0.00 2.57
83 84 8.663911 CAAAAACTAAGAGTGGCAAAAATGAAA 58.336 29.630 0.00 0.00 0.00 2.69
84 85 8.962884 AAAACTAAGAGTGGCAAAAATGAAAT 57.037 26.923 0.00 0.00 0.00 2.17
85 86 7.951530 AACTAAGAGTGGCAAAAATGAAATG 57.048 32.000 0.00 0.00 0.00 2.32
86 87 7.054491 ACTAAGAGTGGCAAAAATGAAATGT 57.946 32.000 0.00 0.00 0.00 2.71
87 88 7.147976 ACTAAGAGTGGCAAAAATGAAATGTC 58.852 34.615 0.00 0.00 0.00 3.06
88 89 5.534207 AGAGTGGCAAAAATGAAATGTCA 57.466 34.783 0.00 0.00 38.41 3.58
89 90 5.916318 AGAGTGGCAAAAATGAAATGTCAA 58.084 33.333 0.00 0.00 37.30 3.18
90 91 6.347696 AGAGTGGCAAAAATGAAATGTCAAA 58.652 32.000 0.00 0.00 37.30 2.69
91 92 6.993902 AGAGTGGCAAAAATGAAATGTCAAAT 59.006 30.769 0.00 0.00 37.30 2.32
92 93 7.499895 AGAGTGGCAAAAATGAAATGTCAAATT 59.500 29.630 0.00 0.00 37.30 1.82
93 94 7.641760 AGTGGCAAAAATGAAATGTCAAATTC 58.358 30.769 0.00 0.00 37.30 2.17
94 95 7.499895 AGTGGCAAAAATGAAATGTCAAATTCT 59.500 29.630 0.00 0.00 37.30 2.40
95 96 8.772705 GTGGCAAAAATGAAATGTCAAATTCTA 58.227 29.630 0.00 0.00 37.30 2.10
96 97 8.991026 TGGCAAAAATGAAATGTCAAATTCTAG 58.009 29.630 0.00 0.00 37.30 2.43
97 98 9.206870 GGCAAAAATGAAATGTCAAATTCTAGA 57.793 29.630 0.00 0.00 37.30 2.43
108 109 7.834068 TGTCAAATTCTAGAGTGACATAAGC 57.166 36.000 22.35 5.92 44.02 3.09
109 110 7.386059 TGTCAAATTCTAGAGTGACATAAGCA 58.614 34.615 22.35 7.74 44.02 3.91
110 111 7.877612 TGTCAAATTCTAGAGTGACATAAGCAA 59.122 33.333 22.35 7.20 44.02 3.91
111 112 8.721478 GTCAAATTCTAGAGTGACATAAGCAAA 58.279 33.333 20.19 0.00 40.10 3.68
112 113 8.939929 TCAAATTCTAGAGTGACATAAGCAAAG 58.060 33.333 0.00 0.00 0.00 2.77
113 114 8.725148 CAAATTCTAGAGTGACATAAGCAAAGT 58.275 33.333 0.00 0.00 0.00 2.66
114 115 7.840342 ATTCTAGAGTGACATAAGCAAAGTG 57.160 36.000 0.00 0.00 0.00 3.16
115 116 5.724328 TCTAGAGTGACATAAGCAAAGTGG 58.276 41.667 0.00 0.00 0.00 4.00
116 117 4.357918 AGAGTGACATAAGCAAAGTGGT 57.642 40.909 0.00 0.00 0.00 4.16
117 118 4.319177 AGAGTGACATAAGCAAAGTGGTC 58.681 43.478 0.00 0.00 0.00 4.02
118 119 4.065088 GAGTGACATAAGCAAAGTGGTCA 58.935 43.478 0.00 0.00 33.31 4.02
119 120 4.460263 AGTGACATAAGCAAAGTGGTCAA 58.540 39.130 0.00 0.00 37.06 3.18
120 121 4.887071 AGTGACATAAGCAAAGTGGTCAAA 59.113 37.500 0.00 0.00 37.06 2.69
121 122 5.359576 AGTGACATAAGCAAAGTGGTCAAAA 59.640 36.000 0.00 0.00 37.06 2.44
122 123 6.040842 AGTGACATAAGCAAAGTGGTCAAAAT 59.959 34.615 0.00 0.00 37.06 1.82
123 124 6.363357 GTGACATAAGCAAAGTGGTCAAAATC 59.637 38.462 0.00 0.00 37.06 2.17
124 125 6.265196 TGACATAAGCAAAGTGGTCAAAATCT 59.735 34.615 0.00 0.00 32.85 2.40
125 126 7.446931 TGACATAAGCAAAGTGGTCAAAATCTA 59.553 33.333 0.00 0.00 32.85 1.98
126 127 7.820648 ACATAAGCAAAGTGGTCAAAATCTAG 58.179 34.615 0.00 0.00 0.00 2.43
127 128 7.665559 ACATAAGCAAAGTGGTCAAAATCTAGA 59.334 33.333 0.00 0.00 0.00 2.43
128 129 6.566197 AAGCAAAGTGGTCAAAATCTAGAG 57.434 37.500 0.00 0.00 0.00 2.43
129 130 5.625150 AGCAAAGTGGTCAAAATCTAGAGT 58.375 37.500 0.00 0.00 0.00 3.24
130 131 5.471456 AGCAAAGTGGTCAAAATCTAGAGTG 59.529 40.000 0.00 0.00 0.00 3.51
131 132 5.335191 GCAAAGTGGTCAAAATCTAGAGTGG 60.335 44.000 0.00 0.00 0.00 4.00
132 133 3.944087 AGTGGTCAAAATCTAGAGTGGC 58.056 45.455 0.00 0.00 0.00 5.01
133 134 3.327757 AGTGGTCAAAATCTAGAGTGGCA 59.672 43.478 0.00 0.00 0.00 4.92
134 135 4.072131 GTGGTCAAAATCTAGAGTGGCAA 58.928 43.478 0.00 0.00 0.00 4.52
135 136 4.518970 GTGGTCAAAATCTAGAGTGGCAAA 59.481 41.667 0.00 0.00 0.00 3.68
136 137 5.009610 GTGGTCAAAATCTAGAGTGGCAAAA 59.990 40.000 0.00 0.00 0.00 2.44
137 138 5.596361 TGGTCAAAATCTAGAGTGGCAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
138 139 5.920840 GGTCAAAATCTAGAGTGGCAAAAAC 59.079 40.000 0.00 0.00 0.00 2.43
139 140 6.460953 GGTCAAAATCTAGAGTGGCAAAAACA 60.461 38.462 0.00 0.00 0.00 2.83
140 141 6.978080 GTCAAAATCTAGAGTGGCAAAAACAA 59.022 34.615 0.00 0.00 0.00 2.83
141 142 7.491048 GTCAAAATCTAGAGTGGCAAAAACAAA 59.509 33.333 0.00 0.00 0.00 2.83
142 143 7.706179 TCAAAATCTAGAGTGGCAAAAACAAAG 59.294 33.333 0.00 0.00 0.00 2.77
143 144 6.715347 AATCTAGAGTGGCAAAAACAAAGT 57.285 33.333 0.00 0.00 0.00 2.66
144 145 6.715347 ATCTAGAGTGGCAAAAACAAAGTT 57.285 33.333 0.00 0.00 0.00 2.66
145 146 6.524101 TCTAGAGTGGCAAAAACAAAGTTT 57.476 33.333 0.00 0.00 0.00 2.66
146 147 6.930731 TCTAGAGTGGCAAAAACAAAGTTTT 58.069 32.000 2.26 2.26 0.00 2.43
147 148 7.382898 TCTAGAGTGGCAAAAACAAAGTTTTT 58.617 30.769 13.18 13.18 32.38 1.94
148 149 6.480524 AGAGTGGCAAAAACAAAGTTTTTC 57.519 33.333 15.40 11.15 30.00 2.29
149 150 5.411361 AGAGTGGCAAAAACAAAGTTTTTCC 59.589 36.000 15.40 17.42 35.21 3.13
150 151 4.153296 AGTGGCAAAAACAAAGTTTTTCCG 59.847 37.500 15.40 8.64 36.80 4.30
151 152 4.152580 GTGGCAAAAACAAAGTTTTTCCGA 59.847 37.500 15.40 4.12 36.80 4.55
152 153 4.755123 TGGCAAAAACAAAGTTTTTCCGAA 59.245 33.333 15.40 5.58 36.80 4.30
153 154 5.238650 TGGCAAAAACAAAGTTTTTCCGAAA 59.761 32.000 15.40 0.00 36.80 3.46
154 155 6.143496 GGCAAAAACAAAGTTTTTCCGAAAA 58.857 32.000 15.40 2.01 32.53 2.29
155 156 6.304445 GGCAAAAACAAAGTTTTTCCGAAAAG 59.696 34.615 15.40 6.38 35.53 2.27
156 157 7.072647 GCAAAAACAAAGTTTTTCCGAAAAGA 58.927 30.769 15.40 0.00 35.53 2.52
157 158 7.588123 GCAAAAACAAAGTTTTTCCGAAAAGAA 59.412 29.630 15.40 0.00 35.53 2.52
158 159 9.439537 CAAAAACAAAGTTTTTCCGAAAAGAAA 57.560 25.926 15.40 0.00 35.53 2.52
199 201 4.686191 TTTGCAACAAGGGTCATGATTT 57.314 36.364 0.00 0.00 0.00 2.17
223 226 1.450134 CATAGCCCGAGTTGCAGCA 60.450 57.895 2.55 0.00 0.00 4.41
246 249 2.818274 GGAGCGCCCAACGTTAGG 60.818 66.667 8.55 8.55 46.11 2.69
270 273 2.031682 GTGAGTGGTCAGACATTGCAAC 60.032 50.000 0.00 0.00 31.53 4.17
271 274 1.195448 GAGTGGTCAGACATTGCAACG 59.805 52.381 0.00 0.00 0.00 4.10
430 437 0.037232 GCACGGCAAGGACTAGTTCT 60.037 55.000 0.00 0.00 0.00 3.01
439 447 3.048941 GACTAGTTCTCCGGCGCGT 62.049 63.158 8.43 0.00 0.00 6.01
489 503 2.752358 CCTTGGGCAGAGCTGTGA 59.248 61.111 16.28 0.00 0.00 3.58
518 532 2.348472 TGGTGAGGGGATTCTGTTTCT 58.652 47.619 0.00 0.00 0.00 2.52
528 542 5.066593 GGGATTCTGTTTCTGAAACTGAGT 58.933 41.667 29.12 27.77 45.74 3.41
546 560 1.352352 AGTGGCTGTTGCAGGAAGTAT 59.648 47.619 0.00 0.00 41.91 2.12
575 589 2.796031 GTCACACACGTTCGATGGTTAA 59.204 45.455 0.00 0.00 0.00 2.01
584 598 3.855379 CGTTCGATGGTTAAATCAGACGA 59.145 43.478 0.00 0.00 36.99 4.20
629 643 1.656818 CTCCATGCGGCCGATGTTTT 61.657 55.000 33.48 2.28 0.00 2.43
684 698 3.604875 TTTTAGGTAAGTCTGGCCTCG 57.395 47.619 3.32 0.00 34.07 4.63
685 699 0.822164 TTAGGTAAGTCTGGCCTCGC 59.178 55.000 3.32 0.00 34.07 5.03
686 700 0.033405 TAGGTAAGTCTGGCCTCGCT 60.033 55.000 3.32 0.00 34.07 4.93
687 701 1.153549 GGTAAGTCTGGCCTCGCTG 60.154 63.158 3.32 0.00 0.00 5.18
688 702 1.592223 GTAAGTCTGGCCTCGCTGT 59.408 57.895 3.32 0.00 0.00 4.40
689 703 0.037232 GTAAGTCTGGCCTCGCTGTT 60.037 55.000 3.32 0.00 0.00 3.16
690 704 0.037326 TAAGTCTGGCCTCGCTGTTG 60.037 55.000 3.32 0.00 0.00 3.33
691 705 3.426568 GTCTGGCCTCGCTGTTGC 61.427 66.667 3.32 0.00 0.00 4.17
701 715 4.702020 GCTGTTGCGTCGGTTTTT 57.298 50.000 0.00 0.00 0.00 1.94
730 744 2.262915 CGGAGCTCGCTGGAGTTT 59.737 61.111 7.83 0.00 42.53 2.66
731 745 1.374758 CGGAGCTCGCTGGAGTTTT 60.375 57.895 7.83 0.00 42.53 2.43
732 746 0.951040 CGGAGCTCGCTGGAGTTTTT 60.951 55.000 7.83 0.00 42.53 1.94
809 823 2.032681 GCCCAACGAGCCTGACTT 59.967 61.111 0.00 0.00 0.00 3.01
810 824 1.600916 GCCCAACGAGCCTGACTTT 60.601 57.895 0.00 0.00 0.00 2.66
811 825 1.172812 GCCCAACGAGCCTGACTTTT 61.173 55.000 0.00 0.00 0.00 2.27
812 826 1.880646 GCCCAACGAGCCTGACTTTTA 60.881 52.381 0.00 0.00 0.00 1.52
813 827 2.711542 CCCAACGAGCCTGACTTTTAT 58.288 47.619 0.00 0.00 0.00 1.40
814 828 3.869065 CCCAACGAGCCTGACTTTTATA 58.131 45.455 0.00 0.00 0.00 0.98
815 829 4.451900 CCCAACGAGCCTGACTTTTATAT 58.548 43.478 0.00 0.00 0.00 0.86
816 830 4.511826 CCCAACGAGCCTGACTTTTATATC 59.488 45.833 0.00 0.00 0.00 1.63
817 831 4.209288 CCAACGAGCCTGACTTTTATATCG 59.791 45.833 0.00 0.00 35.21 2.92
818 832 3.381949 ACGAGCCTGACTTTTATATCGC 58.618 45.455 0.00 0.00 32.45 4.58
819 833 3.181479 ACGAGCCTGACTTTTATATCGCA 60.181 43.478 0.00 0.00 32.45 5.10
820 834 3.802139 CGAGCCTGACTTTTATATCGCAA 59.198 43.478 0.00 0.00 0.00 4.85
821 835 4.449068 CGAGCCTGACTTTTATATCGCAAT 59.551 41.667 0.00 0.00 0.00 3.56
822 836 5.613360 CGAGCCTGACTTTTATATCGCAATG 60.613 44.000 0.00 0.00 0.00 2.82
823 837 4.516698 AGCCTGACTTTTATATCGCAATGG 59.483 41.667 0.00 0.00 0.00 3.16
824 838 4.275936 GCCTGACTTTTATATCGCAATGGT 59.724 41.667 0.00 0.00 0.00 3.55
825 839 5.468746 GCCTGACTTTTATATCGCAATGGTA 59.531 40.000 0.00 0.00 0.00 3.25
826 840 6.347725 GCCTGACTTTTATATCGCAATGGTAG 60.348 42.308 0.00 0.00 0.00 3.18
827 841 6.929049 CCTGACTTTTATATCGCAATGGTAGA 59.071 38.462 0.00 0.00 0.00 2.59
841 855 1.003718 GTAGAGCGGCCCAACTGTT 60.004 57.895 0.00 0.00 0.00 3.16
842 856 1.019805 GTAGAGCGGCCCAACTGTTC 61.020 60.000 0.00 0.00 35.21 3.18
843 857 1.192146 TAGAGCGGCCCAACTGTTCT 61.192 55.000 0.00 0.00 46.07 3.01
849 863 2.500229 CGGCCCAACTGTTCTTTTAGA 58.500 47.619 0.00 0.00 0.00 2.10
856 870 4.702131 CCAACTGTTCTTTTAGATGAGGGG 59.298 45.833 0.00 0.00 0.00 4.79
883 897 2.437413 CCCAACTAAGCAGGGAAAGAC 58.563 52.381 0.00 0.00 45.80 3.01
1053 1067 2.190578 GAGGACAGGGGGCGAATG 59.809 66.667 0.00 0.00 0.00 2.67
1089 1103 1.153147 GGAAGGCATCCGAACCTCC 60.153 63.158 0.00 0.00 38.79 4.30
1263 1291 1.961180 ATTGGAGTCTCGGAAGCGGG 61.961 60.000 0.00 0.00 0.00 6.13
1264 1292 4.516195 GGAGTCTCGGAAGCGGGC 62.516 72.222 0.00 0.00 0.00 6.13
1265 1293 4.856607 GAGTCTCGGAAGCGGGCG 62.857 72.222 0.00 0.00 0.00 6.13
1271 1299 3.788766 CGGAAGCGGGCGTTCTTG 61.789 66.667 0.00 0.00 0.00 3.02
1281 1309 0.898326 GGCGTTCTTGGGTGGGATTT 60.898 55.000 0.00 0.00 0.00 2.17
1286 1314 2.823747 GTTCTTGGGTGGGATTTGGTAC 59.176 50.000 0.00 0.00 0.00 3.34
1297 1325 2.365582 GATTTGGTACCCGTGATGCTT 58.634 47.619 10.07 0.00 0.00 3.91
1298 1326 1.816074 TTTGGTACCCGTGATGCTTC 58.184 50.000 10.07 0.00 0.00 3.86
1299 1327 0.035820 TTGGTACCCGTGATGCTTCC 60.036 55.000 10.07 0.00 0.00 3.46
1300 1328 0.907704 TGGTACCCGTGATGCTTCCT 60.908 55.000 10.07 0.00 0.00 3.36
1301 1329 0.462047 GGTACCCGTGATGCTTCCTG 60.462 60.000 0.00 0.00 0.00 3.86
1302 1330 0.462047 GTACCCGTGATGCTTCCTGG 60.462 60.000 0.00 0.00 0.00 4.45
1303 1331 0.907704 TACCCGTGATGCTTCCTGGT 60.908 55.000 8.97 8.97 0.00 4.00
1304 1332 1.002134 CCCGTGATGCTTCCTGGTT 60.002 57.895 0.00 0.00 0.00 3.67
1305 1333 1.308069 CCCGTGATGCTTCCTGGTTG 61.308 60.000 0.00 0.00 0.00 3.77
1306 1334 1.503542 CGTGATGCTTCCTGGTTGC 59.496 57.895 0.00 0.00 0.00 4.17
1307 1335 1.236616 CGTGATGCTTCCTGGTTGCA 61.237 55.000 15.79 15.79 41.13 4.08
1309 1337 1.547372 GTGATGCTTCCTGGTTGCATT 59.453 47.619 22.32 11.69 45.90 3.56
1310 1338 2.754552 GTGATGCTTCCTGGTTGCATTA 59.245 45.455 22.32 17.94 45.90 1.90
1311 1339 3.018856 TGATGCTTCCTGGTTGCATTAG 58.981 45.455 22.32 0.00 45.90 1.73
1312 1340 1.838112 TGCTTCCTGGTTGCATTAGG 58.162 50.000 11.08 5.33 0.00 2.69
1313 1341 1.106285 GCTTCCTGGTTGCATTAGGG 58.894 55.000 10.44 1.72 32.39 3.53
1314 1342 1.767759 CTTCCTGGTTGCATTAGGGG 58.232 55.000 10.44 0.47 32.39 4.79
1315 1343 0.334676 TTCCTGGTTGCATTAGGGGG 59.665 55.000 10.44 0.00 32.39 5.40
1350 1563 2.283298 CTCGATTGGTGTGATTCTGGG 58.717 52.381 0.00 0.00 0.00 4.45
1389 1602 6.070881 TCCATTCGATTCCAACCATTTCATTT 60.071 34.615 0.00 0.00 0.00 2.32
1390 1603 6.594937 CCATTCGATTCCAACCATTTCATTTT 59.405 34.615 0.00 0.00 0.00 1.82
1391 1604 7.119553 CCATTCGATTCCAACCATTTCATTTTT 59.880 33.333 0.00 0.00 0.00 1.94
1392 1605 7.650834 TTCGATTCCAACCATTTCATTTTTC 57.349 32.000 0.00 0.00 0.00 2.29
1393 1606 6.753180 TCGATTCCAACCATTTCATTTTTCA 58.247 32.000 0.00 0.00 0.00 2.69
1394 1607 7.212976 TCGATTCCAACCATTTCATTTTTCAA 58.787 30.769 0.00 0.00 0.00 2.69
1395 1608 7.170658 TCGATTCCAACCATTTCATTTTTCAAC 59.829 33.333 0.00 0.00 0.00 3.18
1396 1609 7.042187 CGATTCCAACCATTTCATTTTTCAACA 60.042 33.333 0.00 0.00 0.00 3.33
1397 1610 6.917217 TCCAACCATTTCATTTTTCAACAC 57.083 33.333 0.00 0.00 0.00 3.32
1398 1611 5.521735 TCCAACCATTTCATTTTTCAACACG 59.478 36.000 0.00 0.00 0.00 4.49
1433 1646 5.648092 GCTAAAGTTTGATGGGTATGACACT 59.352 40.000 0.00 0.00 0.00 3.55
1434 1647 5.964958 AAAGTTTGATGGGTATGACACTG 57.035 39.130 0.00 0.00 0.00 3.66
1444 1657 3.809832 GGGTATGACACTGAATCGAATGG 59.190 47.826 0.00 0.00 0.00 3.16
1494 1707 3.217626 AGGTTTTGGAGAGCAGAACTTG 58.782 45.455 0.00 0.00 0.00 3.16
1573 1786 4.974645 ACTTGAAACCCTCACTGTATCA 57.025 40.909 0.00 0.00 32.21 2.15
1577 1790 6.431234 ACTTGAAACCCTCACTGTATCATTTC 59.569 38.462 0.00 0.00 32.21 2.17
1619 1833 4.574421 CCTTTGATGCATGACGGTGTTATA 59.426 41.667 2.46 0.00 0.00 0.98
1645 1866 4.759183 GGAAGAAGTCACTGATTCAGCTTT 59.241 41.667 13.64 3.35 34.37 3.51
1655 1876 6.149973 TCACTGATTCAGCTTTCCATTTAGTG 59.850 38.462 13.64 0.00 34.37 2.74
1822 2048 3.002791 TCTGCCGCAATTTCTTACTCTG 58.997 45.455 0.00 0.00 0.00 3.35
1899 2132 6.240145 TGCCAATATATAGCTGCAAATCTGA 58.760 36.000 1.02 0.00 0.00 3.27
1921 2154 9.722184 TCTGATATCTTCCTGAATCAATGAATC 57.278 33.333 3.98 0.00 0.00 2.52
2024 2257 3.366374 GGAAGAGCACAACTGTTTATGCC 60.366 47.826 18.22 12.09 38.92 4.40
2082 2315 2.545106 GCTTGTTTTTGCTCCATTGGTG 59.455 45.455 1.86 0.99 0.00 4.17
2137 2370 2.559440 CATGGCTAAGGCTTCTCAGAC 58.441 52.381 1.30 0.00 38.73 3.51
2241 2485 5.017093 AGCTGTCACTGGGACCTATATAT 57.983 43.478 7.72 0.00 46.38 0.86
2242 2486 6.153942 AGCTGTCACTGGGACCTATATATA 57.846 41.667 7.72 0.00 46.38 0.86
2243 2487 6.746894 AGCTGTCACTGGGACCTATATATAT 58.253 40.000 7.72 0.00 46.38 0.86
2244 2488 7.883823 AGCTGTCACTGGGACCTATATATATA 58.116 38.462 7.72 2.49 46.38 0.86
2312 2558 9.899226 TGAAGACATGAAGTTAGATATCATACG 57.101 33.333 5.32 0.00 32.73 3.06
2418 2664 6.183360 GCACATTTCTTCACTAGTATGTCCAC 60.183 42.308 0.00 0.00 32.09 4.02
2465 2712 4.266714 TCATCTGTAGTACCATCACGTCA 58.733 43.478 0.00 0.00 0.00 4.35
2639 2900 4.023536 GGAATTGCTAACACTGACGGAAAA 60.024 41.667 0.00 0.00 0.00 2.29
2711 2972 4.159244 ACTGGTTTAACTACACAGGCAA 57.841 40.909 0.00 0.00 33.63 4.52
2848 3500 2.029470 CCTTAGCTATCCTCGCTTCTGG 60.029 54.545 0.00 0.00 38.86 3.86
2886 3538 9.847224 AACTATGATATCTAAATGGAAAACGGT 57.153 29.630 3.98 0.00 0.00 4.83
2970 3622 8.581253 ACTTCTAGGCTTAAAATTACTTGCAT 57.419 30.769 0.00 0.00 0.00 3.96
3064 3971 2.662535 AGCAGTGGCAATGGCATATA 57.337 45.000 17.41 0.00 44.61 0.86
3249 4156 3.812053 GCAAAGTCAGATATCGGCAGAAT 59.188 43.478 0.00 0.00 0.00 2.40
3252 4159 6.425504 CAAAGTCAGATATCGGCAGAATTTC 58.574 40.000 10.63 0.00 0.00 2.17
3270 4177 5.643421 ATTTCCATGCCTACAGAAGAGAT 57.357 39.130 0.00 0.00 0.00 2.75
3282 4189 7.607250 CCTACAGAAGAGATAACTGTGAAACT 58.393 38.462 0.00 0.00 43.33 2.66
3284 4191 6.459923 ACAGAAGAGATAACTGTGAAACTCC 58.540 40.000 0.00 0.00 42.18 3.85
3430 4337 4.041198 TGGAAGGGTGTAGTTTCCTTACTG 59.959 45.833 0.00 0.00 41.06 2.74
3463 4370 7.175119 GGCAAAGGACTGATAGAAGTAAAAGTT 59.825 37.037 0.00 0.00 0.00 2.66
3512 4419 7.504403 TCTTATCTCCCTTGTCATTGAATCTC 58.496 38.462 0.00 0.00 0.00 2.75
3637 4544 7.843490 TGCTGTAAGGATTTGTTCTGTATAC 57.157 36.000 0.00 0.00 0.00 1.47
3926 4833 9.745018 AGAGAGAGATAAATTTGGTTTCATTGA 57.255 29.630 0.00 0.00 0.00 2.57
4048 4955 1.348064 TGGACGAAGAGGTGGTCATT 58.652 50.000 0.00 0.00 36.72 2.57
4285 5195 4.657013 CCTTCCTACTTGAGAGCCTTTTT 58.343 43.478 0.00 0.00 0.00 1.94
4692 5602 3.346315 TGAAGAATCATGGTGCGATTGT 58.654 40.909 0.00 0.00 33.26 2.71
4711 5621 4.911514 TGTTTTGCCAACTTCTAGTTCC 57.088 40.909 0.00 0.00 36.03 3.62
4747 5657 1.342819 CCTGTACATGCTCTAGCCTCC 59.657 57.143 0.00 0.00 41.18 4.30
4785 5695 8.849543 TGGTAAGTCCCTTCTTGTAGTATTAT 57.150 34.615 0.00 0.00 34.77 1.28
4855 5765 5.542779 CAGCGAAATAAAGGACTATAGCCT 58.457 41.667 9.23 9.23 37.35 4.58
4946 5856 0.674895 CTGACAGCAGTAAGGGCCAC 60.675 60.000 6.18 0.00 37.37 5.01
5556 6466 4.843728 TGTCAACACAAAGAAGAGGAAGT 58.156 39.130 0.00 0.00 0.00 3.01
5687 6597 1.173444 ACTTGTCACGCCTCGAGAGT 61.173 55.000 15.71 10.91 0.00 3.24
5732 6642 4.511527 TCTCTGACAAAATCTGATGCTCC 58.488 43.478 0.00 0.00 35.00 4.70
5793 6703 1.322538 CCTTGCTGCCCCCATGTAAC 61.323 60.000 0.00 0.00 0.00 2.50
5897 6807 8.664669 TTATATCTTGATATGCTACTGGGTCA 57.335 34.615 12.03 0.00 0.00 4.02
5909 6819 1.780919 ACTGGGTCAAAGGTTAAGGCT 59.219 47.619 0.00 0.00 0.00 4.58
6105 7016 3.954258 CTGGAAAACAAGAGGGACAGTTT 59.046 43.478 0.00 0.00 35.87 2.66
6110 7021 5.582689 AAACAAGAGGGACAGTTTCTTTG 57.417 39.130 0.00 0.00 28.81 2.77
6165 7076 7.654520 CAGTGTACTTTTTGCTTGTACCTAGTA 59.345 37.037 0.00 0.00 36.63 1.82
6177 7088 3.268856 TGTACCTAGTACCTTCAGGAGCT 59.731 47.826 0.00 0.00 38.14 4.09
6178 7089 3.476485 ACCTAGTACCTTCAGGAGCTT 57.524 47.619 0.00 0.00 38.94 3.74
6201 7112 3.350833 ACAGCATCCTCTGTTTCCAATC 58.649 45.455 0.00 0.00 44.26 2.67
6222 7133 4.402829 TCCTTAGAGTAGCAGCAGATAGG 58.597 47.826 0.00 0.00 0.00 2.57
6225 7136 5.182380 CCTTAGAGTAGCAGCAGATAGGTAC 59.818 48.000 0.00 0.00 38.60 3.34
6242 7153 8.938883 AGATAGGTACATGAACATCTAACCATT 58.061 33.333 0.00 1.32 0.00 3.16
6249 7160 6.535150 ACATGAACATCTAACCATTAGTCACG 59.465 38.462 0.00 0.00 34.81 4.35
6252 7163 6.152154 TGAACATCTAACCATTAGTCACGAGA 59.848 38.462 0.00 0.00 34.81 4.04
6255 7166 6.377429 ACATCTAACCATTAGTCACGAGAAGA 59.623 38.462 0.00 0.00 34.81 2.87
6272 7188 5.898606 CGAGAAGATATGTCGCAATTCAAAC 59.101 40.000 0.00 0.00 38.04 2.93
6275 7191 7.820648 AGAAGATATGTCGCAATTCAAACTTT 58.179 30.769 0.00 0.00 0.00 2.66
6276 7192 7.752239 AGAAGATATGTCGCAATTCAAACTTTG 59.248 33.333 0.00 0.00 0.00 2.77
6396 7314 6.035005 CGACAATAGGTTCAACACTACATCTG 59.965 42.308 0.00 0.00 0.00 2.90
6401 7319 8.918202 ATAGGTTCAACACTACATCTGAAAAA 57.082 30.769 0.00 0.00 30.03 1.94
6406 7324 8.958043 GTTCAACACTACATCTGAAAAACAATC 58.042 33.333 0.00 0.00 30.03 2.67
6407 7325 7.351981 TCAACACTACATCTGAAAAACAATCG 58.648 34.615 0.00 0.00 0.00 3.34
6446 7366 4.329462 GCTAATTAGCTAGCCAGTGAGT 57.671 45.455 26.79 0.00 45.62 3.41
6447 7367 4.054671 GCTAATTAGCTAGCCAGTGAGTG 58.945 47.826 26.79 0.00 45.62 3.51
6449 7369 4.399004 AATTAGCTAGCCAGTGAGTGAG 57.601 45.455 12.13 0.00 0.00 3.51
6451 7371 0.902048 AGCTAGCCAGTGAGTGAGCA 60.902 55.000 12.13 0.00 32.28 4.26
6452 7372 0.036952 GCTAGCCAGTGAGTGAGCAA 60.037 55.000 2.29 0.00 0.00 3.91
6453 7373 1.719600 CTAGCCAGTGAGTGAGCAAC 58.280 55.000 0.00 0.00 0.00 4.17
6454 7374 0.321671 TAGCCAGTGAGTGAGCAACC 59.678 55.000 0.00 0.00 0.00 3.77
6455 7375 1.968540 GCCAGTGAGTGAGCAACCC 60.969 63.158 0.00 0.00 0.00 4.11
6456 7376 1.757306 CCAGTGAGTGAGCAACCCT 59.243 57.895 0.00 0.00 0.00 4.34
6457 7377 0.976641 CCAGTGAGTGAGCAACCCTA 59.023 55.000 0.00 0.00 0.00 3.53
6503 7429 9.969001 GTGGGAAGGGCTAAATATATATTGTAA 57.031 33.333 8.74 0.00 0.00 2.41
6564 7490 5.189180 AGGAAGGAAGATTTTTCCTCATCG 58.811 41.667 8.82 0.00 45.78 3.84
6695 7621 2.162008 GGCTCGTATGCTAGCTACCTAC 59.838 54.545 17.23 10.92 38.80 3.18
6696 7622 3.075884 GCTCGTATGCTAGCTACCTACT 58.924 50.000 17.23 0.00 35.80 2.57
6697 7623 3.502979 GCTCGTATGCTAGCTACCTACTT 59.497 47.826 17.23 0.00 35.80 2.24
6698 7624 4.378666 GCTCGTATGCTAGCTACCTACTTC 60.379 50.000 17.23 1.90 35.80 3.01
6699 7625 4.070716 TCGTATGCTAGCTACCTACTTCC 58.929 47.826 17.23 0.00 0.00 3.46
6700 7626 4.073549 CGTATGCTAGCTACCTACTTCCT 58.926 47.826 17.23 0.00 0.00 3.36
6701 7627 4.519730 CGTATGCTAGCTACCTACTTCCTT 59.480 45.833 17.23 0.00 0.00 3.36
6702 7628 5.335035 CGTATGCTAGCTACCTACTTCCTTC 60.335 48.000 17.23 0.00 0.00 3.46
6703 7629 2.950309 TGCTAGCTACCTACTTCCTTCG 59.050 50.000 17.23 0.00 0.00 3.79
6704 7630 2.950975 GCTAGCTACCTACTTCCTTCGT 59.049 50.000 7.70 0.00 0.00 3.85
6705 7631 3.003585 GCTAGCTACCTACTTCCTTCGTC 59.996 52.174 7.70 0.00 0.00 4.20
6706 7632 2.377073 AGCTACCTACTTCCTTCGTCC 58.623 52.381 0.00 0.00 0.00 4.79
6707 7633 1.065251 GCTACCTACTTCCTTCGTCCG 59.935 57.143 0.00 0.00 0.00 4.79
6708 7634 2.636830 CTACCTACTTCCTTCGTCCGA 58.363 52.381 0.00 0.00 0.00 4.55
6709 7635 2.140839 ACCTACTTCCTTCGTCCGAT 57.859 50.000 0.00 0.00 0.00 4.18
6710 7636 1.749634 ACCTACTTCCTTCGTCCGATG 59.250 52.381 0.00 0.00 0.00 3.84
6711 7637 2.022195 CCTACTTCCTTCGTCCGATGA 58.978 52.381 4.37 0.00 0.00 2.92
6712 7638 2.426024 CCTACTTCCTTCGTCCGATGAA 59.574 50.000 3.04 3.04 0.00 2.57
6713 7639 2.656560 ACTTCCTTCGTCCGATGAAG 57.343 50.000 19.63 19.63 40.14 3.02
6714 7640 2.168496 ACTTCCTTCGTCCGATGAAGA 58.832 47.619 25.77 12.84 42.39 2.87
6715 7641 2.164624 ACTTCCTTCGTCCGATGAAGAG 59.835 50.000 25.77 19.29 42.39 2.85
6716 7642 1.835494 TCCTTCGTCCGATGAAGAGT 58.165 50.000 25.77 0.00 42.39 3.24
6717 7643 1.472878 TCCTTCGTCCGATGAAGAGTG 59.527 52.381 25.77 13.11 42.39 3.51
6718 7644 1.202582 CCTTCGTCCGATGAAGAGTGT 59.797 52.381 25.77 0.00 42.39 3.55
6719 7645 2.422479 CCTTCGTCCGATGAAGAGTGTA 59.578 50.000 25.77 0.00 42.39 2.90
6720 7646 3.066900 CCTTCGTCCGATGAAGAGTGTAT 59.933 47.826 25.77 0.00 42.39 2.29
6721 7647 4.275196 CCTTCGTCCGATGAAGAGTGTATA 59.725 45.833 25.77 0.00 42.39 1.47
6722 7648 5.048643 CCTTCGTCCGATGAAGAGTGTATAT 60.049 44.000 25.77 0.00 42.39 0.86
6723 7649 5.608676 TCGTCCGATGAAGAGTGTATATC 57.391 43.478 0.00 0.00 0.00 1.63
6724 7650 5.306394 TCGTCCGATGAAGAGTGTATATCT 58.694 41.667 0.00 0.00 0.00 1.98
6725 7651 6.461640 TCGTCCGATGAAGAGTGTATATCTA 58.538 40.000 0.00 0.00 0.00 1.98
6726 7652 6.590677 TCGTCCGATGAAGAGTGTATATCTAG 59.409 42.308 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.483307 AAGCAATAATTTTAGAGTGGCAATTG 57.517 30.769 0.00 0.00 0.00 2.32
1 2 9.506018 AAAAGCAATAATTTTAGAGTGGCAATT 57.494 25.926 0.00 0.00 0.00 2.32
2 3 8.938906 CAAAAGCAATAATTTTAGAGTGGCAAT 58.061 29.630 0.00 0.00 0.00 3.56
4 5 6.368516 GCAAAAGCAATAATTTTAGAGTGGCA 59.631 34.615 0.00 0.00 0.00 4.92
6 7 6.873076 TGGCAAAAGCAATAATTTTAGAGTGG 59.127 34.615 0.00 0.00 0.00 4.00
7 8 7.410728 CGTGGCAAAAGCAATAATTTTAGAGTG 60.411 37.037 0.00 0.00 0.00 3.51
9 10 6.034898 CCGTGGCAAAAGCAATAATTTTAGAG 59.965 38.462 0.00 0.00 0.00 2.43
10 11 5.866633 CCGTGGCAAAAGCAATAATTTTAGA 59.133 36.000 0.00 0.00 0.00 2.10
11 12 5.866633 TCCGTGGCAAAAGCAATAATTTTAG 59.133 36.000 0.00 0.00 0.00 1.85
13 14 4.636249 TCCGTGGCAAAAGCAATAATTTT 58.364 34.783 0.00 0.00 0.00 1.82
14 15 4.264460 TCCGTGGCAAAAGCAATAATTT 57.736 36.364 0.00 0.00 0.00 1.82
15 16 3.951775 TCCGTGGCAAAAGCAATAATT 57.048 38.095 0.00 0.00 0.00 1.40
16 17 3.951775 TTCCGTGGCAAAAGCAATAAT 57.048 38.095 0.00 0.00 0.00 1.28
17 18 3.256879 TCATTCCGTGGCAAAAGCAATAA 59.743 39.130 0.00 0.00 0.00 1.40
18 19 2.822561 TCATTCCGTGGCAAAAGCAATA 59.177 40.909 0.00 0.00 0.00 1.90
19 20 1.617850 TCATTCCGTGGCAAAAGCAAT 59.382 42.857 0.00 0.00 0.00 3.56
20 21 1.035923 TCATTCCGTGGCAAAAGCAA 58.964 45.000 0.00 0.00 0.00 3.91
21 22 0.313672 GTCATTCCGTGGCAAAAGCA 59.686 50.000 0.00 0.00 30.99 3.91
22 23 0.313672 TGTCATTCCGTGGCAAAAGC 59.686 50.000 0.00 0.00 40.05 3.51
27 28 1.269174 CACAATTGTCATTCCGTGGCA 59.731 47.619 8.48 0.00 41.60 4.92
28 29 1.539388 TCACAATTGTCATTCCGTGGC 59.461 47.619 8.48 0.00 0.00 5.01
29 30 3.191162 ACATCACAATTGTCATTCCGTGG 59.809 43.478 8.48 0.00 0.00 4.94
30 31 4.424061 ACATCACAATTGTCATTCCGTG 57.576 40.909 8.48 0.00 0.00 4.94
31 32 6.150976 ACAATACATCACAATTGTCATTCCGT 59.849 34.615 8.48 0.00 41.31 4.69
32 33 6.554419 ACAATACATCACAATTGTCATTCCG 58.446 36.000 8.48 0.00 41.31 4.30
44 45 9.337396 ACTCTTAGTTTTTGACAATACATCACA 57.663 29.630 0.00 0.00 0.00 3.58
45 46 9.599322 CACTCTTAGTTTTTGACAATACATCAC 57.401 33.333 0.00 0.00 0.00 3.06
46 47 8.783093 CCACTCTTAGTTTTTGACAATACATCA 58.217 33.333 0.00 0.00 0.00 3.07
47 48 7.750903 GCCACTCTTAGTTTTTGACAATACATC 59.249 37.037 0.00 0.00 0.00 3.06
48 49 7.230510 TGCCACTCTTAGTTTTTGACAATACAT 59.769 33.333 0.00 0.00 0.00 2.29
49 50 6.544197 TGCCACTCTTAGTTTTTGACAATACA 59.456 34.615 0.00 0.00 0.00 2.29
50 51 6.966021 TGCCACTCTTAGTTTTTGACAATAC 58.034 36.000 0.00 0.00 0.00 1.89
51 52 7.575414 TTGCCACTCTTAGTTTTTGACAATA 57.425 32.000 0.00 0.00 0.00 1.90
52 53 6.463995 TTGCCACTCTTAGTTTTTGACAAT 57.536 33.333 0.00 0.00 0.00 2.71
53 54 5.906113 TTGCCACTCTTAGTTTTTGACAA 57.094 34.783 0.00 0.00 0.00 3.18
54 55 5.906113 TTTGCCACTCTTAGTTTTTGACA 57.094 34.783 0.00 0.00 0.00 3.58
55 56 7.491048 TCATTTTTGCCACTCTTAGTTTTTGAC 59.509 33.333 0.00 0.00 0.00 3.18
56 57 7.551585 TCATTTTTGCCACTCTTAGTTTTTGA 58.448 30.769 0.00 0.00 0.00 2.69
57 58 7.769272 TCATTTTTGCCACTCTTAGTTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
58 59 8.785329 TTTCATTTTTGCCACTCTTAGTTTTT 57.215 26.923 0.00 0.00 0.00 1.94
59 60 8.829612 CATTTCATTTTTGCCACTCTTAGTTTT 58.170 29.630 0.00 0.00 0.00 2.43
60 61 7.986889 ACATTTCATTTTTGCCACTCTTAGTTT 59.013 29.630 0.00 0.00 0.00 2.66
61 62 7.500141 ACATTTCATTTTTGCCACTCTTAGTT 58.500 30.769 0.00 0.00 0.00 2.24
62 63 7.054491 ACATTTCATTTTTGCCACTCTTAGT 57.946 32.000 0.00 0.00 0.00 2.24
63 64 7.147312 TGACATTTCATTTTTGCCACTCTTAG 58.853 34.615 0.00 0.00 0.00 2.18
64 65 7.048629 TGACATTTCATTTTTGCCACTCTTA 57.951 32.000 0.00 0.00 0.00 2.10
65 66 5.916318 TGACATTTCATTTTTGCCACTCTT 58.084 33.333 0.00 0.00 0.00 2.85
66 67 5.534207 TGACATTTCATTTTTGCCACTCT 57.466 34.783 0.00 0.00 0.00 3.24
67 68 6.601741 TTTGACATTTCATTTTTGCCACTC 57.398 33.333 0.00 0.00 0.00 3.51
68 69 7.499895 AGAATTTGACATTTCATTTTTGCCACT 59.500 29.630 2.57 0.00 0.00 4.00
69 70 7.641760 AGAATTTGACATTTCATTTTTGCCAC 58.358 30.769 2.57 0.00 0.00 5.01
70 71 7.804843 AGAATTTGACATTTCATTTTTGCCA 57.195 28.000 2.57 0.00 0.00 4.92
71 72 9.206870 TCTAGAATTTGACATTTCATTTTTGCC 57.793 29.630 0.00 0.00 0.00 4.52
77 78 9.288576 TGTCACTCTAGAATTTGACATTTCATT 57.711 29.630 20.08 0.00 42.61 2.57
78 79 8.853077 TGTCACTCTAGAATTTGACATTTCAT 57.147 30.769 20.08 0.00 42.61 2.57
85 86 7.834068 TGCTTATGTCACTCTAGAATTTGAC 57.166 36.000 16.64 16.64 39.09 3.18
86 87 8.846943 TTTGCTTATGTCACTCTAGAATTTGA 57.153 30.769 0.00 0.00 0.00 2.69
87 88 8.725148 ACTTTGCTTATGTCACTCTAGAATTTG 58.275 33.333 0.00 0.00 0.00 2.32
88 89 8.725148 CACTTTGCTTATGTCACTCTAGAATTT 58.275 33.333 0.00 0.00 0.00 1.82
89 90 7.335422 CCACTTTGCTTATGTCACTCTAGAATT 59.665 37.037 0.00 0.00 0.00 2.17
90 91 6.820656 CCACTTTGCTTATGTCACTCTAGAAT 59.179 38.462 0.00 0.00 0.00 2.40
91 92 6.166279 CCACTTTGCTTATGTCACTCTAGAA 58.834 40.000 0.00 0.00 0.00 2.10
92 93 5.246203 ACCACTTTGCTTATGTCACTCTAGA 59.754 40.000 0.00 0.00 0.00 2.43
93 94 5.482908 ACCACTTTGCTTATGTCACTCTAG 58.517 41.667 0.00 0.00 0.00 2.43
94 95 5.011635 TGACCACTTTGCTTATGTCACTCTA 59.988 40.000 0.00 0.00 0.00 2.43
95 96 4.202357 TGACCACTTTGCTTATGTCACTCT 60.202 41.667 0.00 0.00 0.00 3.24
96 97 4.065088 TGACCACTTTGCTTATGTCACTC 58.935 43.478 0.00 0.00 0.00 3.51
97 98 4.085357 TGACCACTTTGCTTATGTCACT 57.915 40.909 0.00 0.00 0.00 3.41
98 99 4.829064 TTGACCACTTTGCTTATGTCAC 57.171 40.909 0.00 0.00 32.91 3.67
99 100 5.843673 TTTTGACCACTTTGCTTATGTCA 57.156 34.783 0.00 0.00 0.00 3.58
100 101 6.681777 AGATTTTGACCACTTTGCTTATGTC 58.318 36.000 0.00 0.00 0.00 3.06
101 102 6.655078 AGATTTTGACCACTTTGCTTATGT 57.345 33.333 0.00 0.00 0.00 2.29
102 103 8.044060 TCTAGATTTTGACCACTTTGCTTATG 57.956 34.615 0.00 0.00 0.00 1.90
103 104 7.885399 ACTCTAGATTTTGACCACTTTGCTTAT 59.115 33.333 0.00 0.00 0.00 1.73
104 105 7.173218 CACTCTAGATTTTGACCACTTTGCTTA 59.827 37.037 0.00 0.00 0.00 3.09
105 106 6.016777 CACTCTAGATTTTGACCACTTTGCTT 60.017 38.462 0.00 0.00 0.00 3.91
106 107 5.471456 CACTCTAGATTTTGACCACTTTGCT 59.529 40.000 0.00 0.00 0.00 3.91
107 108 5.335191 CCACTCTAGATTTTGACCACTTTGC 60.335 44.000 0.00 0.00 0.00 3.68
108 109 5.335191 GCCACTCTAGATTTTGACCACTTTG 60.335 44.000 0.00 0.00 0.00 2.77
109 110 4.762251 GCCACTCTAGATTTTGACCACTTT 59.238 41.667 0.00 0.00 0.00 2.66
110 111 4.202461 TGCCACTCTAGATTTTGACCACTT 60.202 41.667 0.00 0.00 0.00 3.16
111 112 3.327757 TGCCACTCTAGATTTTGACCACT 59.672 43.478 0.00 0.00 0.00 4.00
112 113 3.674997 TGCCACTCTAGATTTTGACCAC 58.325 45.455 0.00 0.00 0.00 4.16
113 114 4.365514 TTGCCACTCTAGATTTTGACCA 57.634 40.909 0.00 0.00 0.00 4.02
114 115 5.705609 TTTTGCCACTCTAGATTTTGACC 57.294 39.130 0.00 0.00 0.00 4.02
115 116 6.503524 TGTTTTTGCCACTCTAGATTTTGAC 58.496 36.000 0.00 0.00 0.00 3.18
116 117 6.707440 TGTTTTTGCCACTCTAGATTTTGA 57.293 33.333 0.00 0.00 0.00 2.69
117 118 7.492344 ACTTTGTTTTTGCCACTCTAGATTTTG 59.508 33.333 0.00 0.00 0.00 2.44
118 119 7.555965 ACTTTGTTTTTGCCACTCTAGATTTT 58.444 30.769 0.00 0.00 0.00 1.82
119 120 7.112452 ACTTTGTTTTTGCCACTCTAGATTT 57.888 32.000 0.00 0.00 0.00 2.17
120 121 6.715347 ACTTTGTTTTTGCCACTCTAGATT 57.285 33.333 0.00 0.00 0.00 2.40
121 122 6.715347 AACTTTGTTTTTGCCACTCTAGAT 57.285 33.333 0.00 0.00 0.00 1.98
122 123 6.524101 AAACTTTGTTTTTGCCACTCTAGA 57.476 33.333 0.00 0.00 0.00 2.43
123 124 7.201522 GGAAAAACTTTGTTTTTGCCACTCTAG 60.202 37.037 21.00 0.00 42.08 2.43
124 125 6.592220 GGAAAAACTTTGTTTTTGCCACTCTA 59.408 34.615 21.00 0.00 42.08 2.43
125 126 5.411361 GGAAAAACTTTGTTTTTGCCACTCT 59.589 36.000 21.00 0.43 42.08 3.24
126 127 5.627172 GGAAAAACTTTGTTTTTGCCACTC 58.373 37.500 21.00 9.19 42.08 3.51
127 128 4.153296 CGGAAAAACTTTGTTTTTGCCACT 59.847 37.500 23.81 5.36 42.48 4.00
128 129 4.152580 TCGGAAAAACTTTGTTTTTGCCAC 59.847 37.500 23.81 12.37 42.48 5.01
129 130 4.315803 TCGGAAAAACTTTGTTTTTGCCA 58.684 34.783 23.81 14.97 42.48 4.92
130 131 4.930463 TCGGAAAAACTTTGTTTTTGCC 57.070 36.364 23.81 20.22 39.89 4.52
131 132 7.072647 TCTTTTCGGAAAAACTTTGTTTTTGC 58.927 30.769 21.00 21.34 36.70 3.68
132 133 8.995419 TTCTTTTCGGAAAAACTTTGTTTTTG 57.005 26.923 21.00 10.99 32.37 2.44
134 135 9.605955 CATTTCTTTTCGGAAAAACTTTGTTTT 57.394 25.926 15.99 2.97 38.46 2.43
135 136 8.233868 CCATTTCTTTTCGGAAAAACTTTGTTT 58.766 29.630 15.99 0.00 38.46 2.83
136 137 7.389330 ACCATTTCTTTTCGGAAAAACTTTGTT 59.611 29.630 15.99 0.27 38.46 2.83
137 138 6.876789 ACCATTTCTTTTCGGAAAAACTTTGT 59.123 30.769 15.99 7.47 38.46 2.83
138 139 7.302350 ACCATTTCTTTTCGGAAAAACTTTG 57.698 32.000 15.99 11.33 38.46 2.77
139 140 7.389330 ACAACCATTTCTTTTCGGAAAAACTTT 59.611 29.630 15.99 1.07 38.46 2.66
140 141 6.876789 ACAACCATTTCTTTTCGGAAAAACTT 59.123 30.769 15.99 0.75 38.46 2.66
141 142 6.312672 CACAACCATTTCTTTTCGGAAAAACT 59.687 34.615 15.99 0.28 38.46 2.66
142 143 6.311690 TCACAACCATTTCTTTTCGGAAAAAC 59.688 34.615 15.99 0.00 38.46 2.43
143 144 6.398918 TCACAACCATTTCTTTTCGGAAAAA 58.601 32.000 15.99 3.30 38.46 1.94
144 145 5.967088 TCACAACCATTTCTTTTCGGAAAA 58.033 33.333 14.64 14.64 38.46 2.29
145 146 5.584253 TCACAACCATTTCTTTTCGGAAA 57.416 34.783 0.00 0.00 39.16 3.13
146 147 5.451242 CCTTCACAACCATTTCTTTTCGGAA 60.451 40.000 0.00 0.00 0.00 4.30
147 148 4.037446 CCTTCACAACCATTTCTTTTCGGA 59.963 41.667 0.00 0.00 0.00 4.55
148 149 4.202111 ACCTTCACAACCATTTCTTTTCGG 60.202 41.667 0.00 0.00 0.00 4.30
149 150 4.932146 ACCTTCACAACCATTTCTTTTCG 58.068 39.130 0.00 0.00 0.00 3.46
150 151 7.609760 AAAACCTTCACAACCATTTCTTTTC 57.390 32.000 0.00 0.00 0.00 2.29
151 152 7.994425 AAAAACCTTCACAACCATTTCTTTT 57.006 28.000 0.00 0.00 0.00 2.27
196 198 5.047660 TGCAACTCGGGCTATGTTTTTAAAT 60.048 36.000 0.00 0.00 0.00 1.40
199 201 3.413327 TGCAACTCGGGCTATGTTTTTA 58.587 40.909 0.00 0.00 0.00 1.52
238 241 1.617357 GACCACTCACTCCCTAACGTT 59.383 52.381 5.88 5.88 0.00 3.99
246 249 2.693069 CAATGTCTGACCACTCACTCC 58.307 52.381 5.17 0.00 0.00 3.85
270 273 2.290367 TGTTTCTGAAACATGCCTCACG 59.710 45.455 27.14 0.00 45.79 4.35
271 274 3.988379 TGTTTCTGAAACATGCCTCAC 57.012 42.857 27.14 4.28 45.79 3.51
439 447 3.798650 CAAAATCGCTGCCGCCGA 61.799 61.111 0.00 0.00 39.24 5.54
474 482 1.071987 CTGTCACAGCTCTGCCCAA 59.928 57.895 0.00 0.00 0.00 4.12
489 503 1.990060 CCCCTCACCATCGTCCTGT 60.990 63.158 0.00 0.00 0.00 4.00
518 532 1.024271 GCAACAGCCACTCAGTTTCA 58.976 50.000 0.00 0.00 0.00 2.69
528 542 1.614051 CCATACTTCCTGCAACAGCCA 60.614 52.381 0.00 0.00 0.00 4.75
546 560 1.618876 AACGTGTGTGACCACCTCCA 61.619 55.000 0.00 0.00 41.09 3.86
565 579 4.082408 ACAGTCGTCTGATTTAACCATCGA 60.082 41.667 16.64 0.00 43.76 3.59
575 589 4.274147 AGTATCCTGACAGTCGTCTGATT 58.726 43.478 16.64 0.00 43.76 2.57
593 607 1.139058 GGAGCACCGTTGGATGAGTAT 59.861 52.381 0.00 0.00 0.00 2.12
594 608 0.535335 GGAGCACCGTTGGATGAGTA 59.465 55.000 0.00 0.00 0.00 2.59
629 643 2.544277 CGTCTTCCGGCGGATGTATTAA 60.544 50.000 32.56 16.36 0.00 1.40
663 677 3.867216 GCGAGGCCAGACTTACCTAAAAA 60.867 47.826 5.01 0.00 32.67 1.94
664 678 2.354403 GCGAGGCCAGACTTACCTAAAA 60.354 50.000 5.01 0.00 32.67 1.52
665 679 1.206371 GCGAGGCCAGACTTACCTAAA 59.794 52.381 5.01 0.00 32.67 1.85
666 680 0.822164 GCGAGGCCAGACTTACCTAA 59.178 55.000 5.01 0.00 32.67 2.69
667 681 0.033405 AGCGAGGCCAGACTTACCTA 60.033 55.000 5.01 0.00 32.67 3.08
668 682 1.305381 AGCGAGGCCAGACTTACCT 60.305 57.895 5.01 0.00 36.19 3.08
669 683 1.153549 CAGCGAGGCCAGACTTACC 60.154 63.158 5.01 0.00 0.00 2.85
670 684 0.037232 AACAGCGAGGCCAGACTTAC 60.037 55.000 5.01 0.00 0.00 2.34
671 685 0.037326 CAACAGCGAGGCCAGACTTA 60.037 55.000 5.01 0.00 0.00 2.24
672 686 1.302033 CAACAGCGAGGCCAGACTT 60.302 57.895 5.01 0.00 0.00 3.01
673 687 2.345244 CAACAGCGAGGCCAGACT 59.655 61.111 5.01 0.00 0.00 3.24
674 688 3.426568 GCAACAGCGAGGCCAGAC 61.427 66.667 5.01 0.00 0.00 3.51
684 698 4.702020 AAAAACCGACGCAACAGC 57.298 50.000 0.00 0.00 0.00 4.40
699 713 3.275999 GAGCTCCGCCCAATACTAAAAA 58.724 45.455 0.87 0.00 0.00 1.94
700 714 2.740580 CGAGCTCCGCCCAATACTAAAA 60.741 50.000 8.47 0.00 0.00 1.52
701 715 1.202486 CGAGCTCCGCCCAATACTAAA 60.202 52.381 8.47 0.00 0.00 1.85
702 716 0.387929 CGAGCTCCGCCCAATACTAA 59.612 55.000 8.47 0.00 0.00 2.24
703 717 2.038690 CGAGCTCCGCCCAATACTA 58.961 57.895 8.47 0.00 0.00 1.82
704 718 2.815308 CGAGCTCCGCCCAATACT 59.185 61.111 8.47 0.00 0.00 2.12
713 727 0.951040 AAAAACTCCAGCGAGCTCCG 60.951 55.000 8.47 4.62 40.03 4.63
714 728 2.934083 AAAAACTCCAGCGAGCTCC 58.066 52.632 8.47 0.68 40.03 4.70
736 750 1.967319 AACTCCAGCGAGCTCAAAAA 58.033 45.000 15.40 0.00 40.03 1.94
737 751 1.603802 CAAACTCCAGCGAGCTCAAAA 59.396 47.619 15.40 0.00 40.03 2.44
738 752 1.202639 TCAAACTCCAGCGAGCTCAAA 60.203 47.619 15.40 0.00 40.03 2.69
739 753 0.392706 TCAAACTCCAGCGAGCTCAA 59.607 50.000 15.40 0.00 40.03 3.02
740 754 0.392706 TTCAAACTCCAGCGAGCTCA 59.607 50.000 15.40 0.00 40.03 4.26
741 755 1.074752 CTTCAAACTCCAGCGAGCTC 58.925 55.000 2.73 2.73 40.03 4.09
742 756 0.321122 CCTTCAAACTCCAGCGAGCT 60.321 55.000 0.00 0.00 40.03 4.09
743 757 1.916697 GCCTTCAAACTCCAGCGAGC 61.917 60.000 0.00 0.00 40.03 5.03
747 761 2.335712 CGGGCCTTCAAACTCCAGC 61.336 63.158 0.84 0.00 0.00 4.85
803 817 7.359598 GCTCTACCATTGCGATATAAAAGTCAG 60.360 40.741 0.00 0.00 0.00 3.51
804 818 6.423905 GCTCTACCATTGCGATATAAAAGTCA 59.576 38.462 0.00 0.00 0.00 3.41
805 819 6.822506 GCTCTACCATTGCGATATAAAAGTC 58.177 40.000 0.00 0.00 0.00 3.01
806 820 6.787085 GCTCTACCATTGCGATATAAAAGT 57.213 37.500 0.00 0.00 0.00 2.66
817 831 2.902343 GGGCCGCTCTACCATTGC 60.902 66.667 0.00 0.00 0.00 3.56
818 832 1.077787 TTGGGCCGCTCTACCATTG 60.078 57.895 0.00 0.00 33.63 2.82
819 833 1.077716 GTTGGGCCGCTCTACCATT 60.078 57.895 0.00 0.00 33.63 3.16
820 834 1.995626 AGTTGGGCCGCTCTACCAT 60.996 57.895 0.83 0.00 33.63 3.55
821 835 2.606519 AGTTGGGCCGCTCTACCA 60.607 61.111 0.83 0.00 0.00 3.25
822 836 2.125106 CAGTTGGGCCGCTCTACC 60.125 66.667 0.83 0.00 0.00 3.18
823 837 1.003718 AACAGTTGGGCCGCTCTAC 60.004 57.895 0.00 0.00 0.00 2.59
824 838 1.192146 AGAACAGTTGGGCCGCTCTA 61.192 55.000 0.00 0.00 0.00 2.43
825 839 2.032681 GAACAGTTGGGCCGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
826 840 1.172812 AAAGAACAGTTGGGCCGCTC 61.173 55.000 0.00 0.00 0.00 5.03
827 841 0.755327 AAAAGAACAGTTGGGCCGCT 60.755 50.000 0.00 0.00 0.00 5.52
830 844 4.079253 TCATCTAAAAGAACAGTTGGGCC 58.921 43.478 0.00 0.00 0.00 5.80
841 855 1.762957 CGCTCCCCCTCATCTAAAAGA 59.237 52.381 0.00 0.00 0.00 2.52
842 856 1.202698 CCGCTCCCCCTCATCTAAAAG 60.203 57.143 0.00 0.00 0.00 2.27
843 857 0.837272 CCGCTCCCCCTCATCTAAAA 59.163 55.000 0.00 0.00 0.00 1.52
856 870 2.824489 GCTTAGTTGGGCCGCTCC 60.824 66.667 0.00 0.00 0.00 4.70
883 897 2.354510 CGCTCTCTCTCCACTCTAACAG 59.645 54.545 0.00 0.00 0.00 3.16
935 949 2.987355 TTTCCCGCCTCCGCCTTTTT 62.987 55.000 0.00 0.00 0.00 1.94
936 950 2.987355 TTTTCCCGCCTCCGCCTTTT 62.987 55.000 0.00 0.00 0.00 2.27
937 951 3.501040 TTTTCCCGCCTCCGCCTTT 62.501 57.895 0.00 0.00 0.00 3.11
938 952 3.920093 CTTTTCCCGCCTCCGCCTT 62.920 63.158 0.00 0.00 0.00 4.35
939 953 4.410400 CTTTTCCCGCCTCCGCCT 62.410 66.667 0.00 0.00 0.00 5.52
942 956 4.715523 TGCCTTTTCCCGCCTCCG 62.716 66.667 0.00 0.00 0.00 4.63
943 957 2.282887 TTGCCTTTTCCCGCCTCC 60.283 61.111 0.00 0.00 0.00 4.30
944 958 2.994671 GCTTGCCTTTTCCCGCCTC 61.995 63.158 0.00 0.00 0.00 4.70
945 959 2.991540 GCTTGCCTTTTCCCGCCT 60.992 61.111 0.00 0.00 0.00 5.52
946 960 4.069232 GGCTTGCCTTTTCCCGCC 62.069 66.667 4.11 0.00 0.00 6.13
947 961 3.302344 TGGCTTGCCTTTTCCCGC 61.302 61.111 13.18 0.00 0.00 6.13
948 962 2.650778 GTGGCTTGCCTTTTCCCG 59.349 61.111 13.18 0.00 0.00 5.14
989 1003 0.178978 GATTTCCATGGCTCCCCCTC 60.179 60.000 6.96 0.00 0.00 4.30
1048 1062 1.450312 GGTCCACCAGCTCCATTCG 60.450 63.158 0.00 0.00 35.64 3.34
1051 1065 3.732938 GAGGTCCACCAGCTCCAT 58.267 61.111 0.00 0.00 42.98 3.41
1076 1090 2.107141 CCTCGGAGGTTCGGATGC 59.893 66.667 16.15 0.00 0.00 3.91
1095 1109 1.077357 GGGCTGAGAGAGAGGACGA 60.077 63.158 0.00 0.00 0.00 4.20
1100 1114 1.153667 GCGTTGGGCTGAGAGAGAG 60.154 63.158 0.00 0.00 39.11 3.20
1192 1220 2.283298 CACGCATACCAAATCTGAGCT 58.717 47.619 0.00 0.00 0.00 4.09
1224 1252 0.249868 TAGCAATCCAGCCGAATCCG 60.250 55.000 0.00 0.00 34.23 4.18
1263 1291 0.243636 CAAATCCCACCCAAGAACGC 59.756 55.000 0.00 0.00 0.00 4.84
1264 1292 0.887933 CCAAATCCCACCCAAGAACG 59.112 55.000 0.00 0.00 0.00 3.95
1265 1293 2.009681 ACCAAATCCCACCCAAGAAC 57.990 50.000 0.00 0.00 0.00 3.01
1286 1314 1.002134 AACCAGGAAGCATCACGGG 60.002 57.895 0.00 0.00 0.00 5.28
1297 1325 2.006748 CCCCCTAATGCAACCAGGA 58.993 57.895 12.00 0.00 0.00 3.86
1298 1326 4.684623 CCCCCTAATGCAACCAGG 57.315 61.111 0.00 0.00 0.00 4.45
1319 1347 1.895707 CAATCGAGCATGAGCCCCC 60.896 63.158 0.00 0.00 43.56 5.40
1320 1348 1.895707 CCAATCGAGCATGAGCCCC 60.896 63.158 0.00 0.00 43.56 5.80
1321 1349 1.153086 ACCAATCGAGCATGAGCCC 60.153 57.895 0.00 0.00 43.56 5.19
1322 1350 0.745845 ACACCAATCGAGCATGAGCC 60.746 55.000 0.00 0.00 43.56 4.70
1323 1351 0.376152 CACACCAATCGAGCATGAGC 59.624 55.000 0.00 0.00 42.56 4.26
1350 1563 6.833342 ATCGAATGGAAAATAAATTGCTGC 57.167 33.333 0.00 0.00 0.00 5.25
1389 1602 2.227865 GCCTCTAATTGCCGTGTTGAAA 59.772 45.455 0.00 0.00 0.00 2.69
1390 1603 1.810151 GCCTCTAATTGCCGTGTTGAA 59.190 47.619 0.00 0.00 0.00 2.69
1391 1604 1.003118 AGCCTCTAATTGCCGTGTTGA 59.997 47.619 0.00 0.00 0.00 3.18
1392 1605 1.453155 AGCCTCTAATTGCCGTGTTG 58.547 50.000 0.00 0.00 0.00 3.33
1393 1606 3.343941 TTAGCCTCTAATTGCCGTGTT 57.656 42.857 0.00 0.00 0.00 3.32
1394 1607 3.270877 CTTTAGCCTCTAATTGCCGTGT 58.729 45.455 0.00 0.00 0.00 4.49
1395 1608 3.270877 ACTTTAGCCTCTAATTGCCGTG 58.729 45.455 0.00 0.00 0.00 4.94
1396 1609 3.629142 ACTTTAGCCTCTAATTGCCGT 57.371 42.857 0.00 0.00 0.00 5.68
1397 1610 4.394920 TCAAACTTTAGCCTCTAATTGCCG 59.605 41.667 0.00 0.00 0.00 5.69
1398 1611 5.897377 TCAAACTTTAGCCTCTAATTGCC 57.103 39.130 0.00 0.00 0.00 4.52
1433 1646 4.102524 AGTTAGCCCATACCATTCGATTCA 59.897 41.667 0.00 0.00 0.00 2.57
1434 1647 4.642429 AGTTAGCCCATACCATTCGATTC 58.358 43.478 0.00 0.00 0.00 2.52
1444 1657 8.398665 CAAAATCAGTAGAAAGTTAGCCCATAC 58.601 37.037 0.00 0.00 0.00 2.39
1494 1707 2.280628 CCTCGAGTTGGTTGATAAGGC 58.719 52.381 12.31 0.00 0.00 4.35
1528 1741 0.179051 GGCCCAGATCTTCTGCAGAG 60.179 60.000 17.43 11.30 42.98 3.35
1573 1786 5.770162 GGGAATCATACCGAAATGGAGAAAT 59.230 40.000 0.00 0.00 42.00 2.17
1577 1790 4.357918 AGGGAATCATACCGAAATGGAG 57.642 45.455 0.00 0.00 42.00 3.86
1619 1833 4.699257 GCTGAATCAGTGACTTCTTCCAAT 59.301 41.667 12.29 0.00 33.43 3.16
1645 1866 5.373222 ACAACAGTAACAGCACTAAATGGA 58.627 37.500 0.00 0.00 0.00 3.41
1655 1876 1.063469 ACACGCAACAACAGTAACAGC 59.937 47.619 0.00 0.00 0.00 4.40
1711 1937 4.184629 GTGATACACCTGAACATCTGGAC 58.815 47.826 9.87 0.00 37.65 4.02
1899 2132 8.446394 ACAGGATTCATTGATTCAGGAAGATAT 58.554 33.333 9.96 0.00 0.00 1.63
2137 2370 9.388506 CATTTTAGGCTATAACATATCTGGAGG 57.611 37.037 0.00 0.00 0.00 4.30
2307 2553 6.432936 ACTCATATGCATTTTGCTTCGTATG 58.567 36.000 3.54 0.00 45.31 2.39
2312 2558 9.304731 TGAAAATACTCATATGCATTTTGCTTC 57.695 29.630 18.90 10.58 45.31 3.86
2330 2576 9.827411 GAACATAAAGGTCTGTCTTGAAAATAC 57.173 33.333 0.00 0.00 0.00 1.89
2333 2579 7.873719 TGAACATAAAGGTCTGTCTTGAAAA 57.126 32.000 0.00 0.00 34.06 2.29
2450 2697 7.604549 TGATTAAACTTGACGTGATGGTACTA 58.395 34.615 0.00 0.00 0.00 1.82
2459 2706 5.862924 ACCTCATGATTAAACTTGACGTG 57.137 39.130 0.00 0.00 0.00 4.49
2465 2712 8.043710 CAGAACCTCTACCTCATGATTAAACTT 58.956 37.037 0.00 0.00 0.00 2.66
2589 2850 4.695217 AAAACCACCAATAGTATGCACG 57.305 40.909 0.00 0.00 0.00 5.34
2639 2900 8.258708 GGAGTATTACCTTGTCAACTATTGAGT 58.741 37.037 0.00 0.00 41.01 3.41
2711 2972 1.070604 CCCATGTAGATGCCTCCCAT 58.929 55.000 0.00 0.00 36.70 4.00
2886 3538 9.004717 TGTACTTTAACAAGCAGCACATTATAA 57.995 29.630 0.00 0.00 32.57 0.98
3140 4047 3.057315 ACATGTGCTGCAGTTCCATTAAC 60.057 43.478 16.64 2.33 38.46 2.01
3249 4156 6.156949 AGTTATCTCTTCTGTAGGCATGGAAA 59.843 38.462 0.00 0.00 0.00 3.13
3252 4159 5.163364 ACAGTTATCTCTTCTGTAGGCATGG 60.163 44.000 0.00 0.00 40.06 3.66
3270 4177 6.833041 TCTGGTAATTGGAGTTTCACAGTTA 58.167 36.000 0.00 0.00 0.00 2.24
3282 4189 5.105106 TCGCTTGTAAGATCTGGTAATTGGA 60.105 40.000 0.00 0.00 0.00 3.53
3284 4191 5.276395 CGTCGCTTGTAAGATCTGGTAATTG 60.276 44.000 0.00 0.00 0.00 2.32
3430 4337 1.032014 TCAGTCCTTTGCCAAGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
3463 4370 7.283354 AGAGTCGAAATGATATCACTGACACTA 59.717 37.037 21.05 0.32 0.00 2.74
3512 4419 0.811616 GTATCCGCAGCAACCCTCAG 60.812 60.000 0.00 0.00 0.00 3.35
3637 4544 0.824109 TAGTCAGTGCTTCGGATGGG 59.176 55.000 0.00 0.00 0.00 4.00
3926 4833 3.543665 GATCCAGAGAGAAAATGCAGCT 58.456 45.455 0.00 0.00 0.00 4.24
4285 5195 3.261390 CCAAGCAAAAGAAATGGGGATGA 59.739 43.478 0.00 0.00 0.00 2.92
4614 5524 0.965439 TTGGTTTACAGCATGCACCC 59.035 50.000 21.98 10.07 42.53 4.61
4692 5602 2.882137 CCGGAACTAGAAGTTGGCAAAA 59.118 45.455 0.00 0.00 38.80 2.44
4711 5621 2.395619 ACAGGAAGACCTATTACCCCG 58.604 52.381 0.00 0.00 45.94 5.73
4785 5695 4.080751 TCAGCATCCATTCATCAGACTTGA 60.081 41.667 0.00 0.00 37.81 3.02
4798 5708 5.597182 ACAAGAGCATAAAATCAGCATCCAT 59.403 36.000 0.00 0.00 0.00 3.41
4855 5765 7.306013 AGTGGTAATACTCTTCCCATCTATGA 58.694 38.462 0.00 0.00 0.00 2.15
4946 5856 2.019984 GAACTAATGAGCTGGGCAAGG 58.980 52.381 0.00 0.00 0.00 3.61
5556 6466 1.819208 CGCCGATTCCATCTGGCAA 60.819 57.895 15.26 0.00 43.94 4.52
5687 6597 4.389890 ACTTGCAATTTGAGAAACTGCA 57.610 36.364 0.00 1.32 36.47 4.41
5732 6642 0.171455 AGAGTAACAGAAGCGGCGAG 59.829 55.000 12.98 0.00 0.00 5.03
5793 6703 7.538575 ACAATTAGCTGTTGTGCCTTAATAAG 58.461 34.615 15.80 0.00 38.31 1.73
5897 6807 4.822350 GTCTTCAAGTCAGCCTTAACCTTT 59.178 41.667 0.00 0.00 0.00 3.11
5909 6819 6.085555 ACAGAAATAGTCGTCTTCAAGTCA 57.914 37.500 0.00 0.00 0.00 3.41
5997 6907 2.593775 CCGTGCATTTTTAACTCGCATG 59.406 45.455 0.00 0.00 38.92 4.06
6009 6919 3.507233 ACATTCACTTCATCCGTGCATTT 59.493 39.130 0.00 0.00 32.54 2.32
6105 7016 7.450074 TGAAAACTAGAGGATTACAGCAAAGA 58.550 34.615 0.00 0.00 0.00 2.52
6110 7021 5.178797 TGCTGAAAACTAGAGGATTACAGC 58.821 41.667 0.00 0.00 45.21 4.40
6165 7076 0.036022 GCTGTCAAGCTCCTGAAGGT 59.964 55.000 0.00 0.00 46.60 3.50
6201 7112 4.148838 ACCTATCTGCTGCTACTCTAAGG 58.851 47.826 0.00 1.69 0.00 2.69
6222 7133 8.818057 GTGACTAATGGTTAGATGTTCATGTAC 58.182 37.037 3.89 0.00 36.73 2.90
6225 7136 6.756542 TCGTGACTAATGGTTAGATGTTCATG 59.243 38.462 3.89 0.00 36.73 3.07
6242 7153 3.875134 TGCGACATATCTTCTCGTGACTA 59.125 43.478 0.00 0.00 0.00 2.59
6249 7160 7.009568 AGTTTGAATTGCGACATATCTTCTC 57.990 36.000 0.00 0.00 0.00 2.87
6252 7163 7.592938 TCAAAGTTTGAATTGCGACATATCTT 58.407 30.769 15.92 0.00 36.59 2.40
6272 7188 8.514594 TCAGGCTTCATTTTGTATACTTCAAAG 58.485 33.333 4.17 2.49 36.40 2.77
6275 7191 7.994425 TTCAGGCTTCATTTTGTATACTTCA 57.006 32.000 4.17 0.00 0.00 3.02
6276 7192 9.294030 CATTTCAGGCTTCATTTTGTATACTTC 57.706 33.333 4.17 0.00 0.00 3.01
6372 7290 7.097192 TCAGATGTAGTGTTGAACCTATTGTC 58.903 38.462 0.00 0.00 0.00 3.18
6378 7296 6.601613 TGTTTTTCAGATGTAGTGTTGAACCT 59.398 34.615 0.00 0.00 29.96 3.50
6401 7319 9.109393 AGCATACTATATTGTTGAAACGATTGT 57.891 29.630 1.33 2.72 34.84 2.71
6446 7366 3.517296 TTTGTTGGATAGGGTTGCTCA 57.483 42.857 0.00 0.00 0.00 4.26
6447 7367 3.367395 GCTTTTGTTGGATAGGGTTGCTC 60.367 47.826 0.00 0.00 0.00 4.26
6449 7369 2.298729 TGCTTTTGTTGGATAGGGTTGC 59.701 45.455 0.00 0.00 0.00 4.17
6451 7371 5.130311 AGTTTTGCTTTTGTTGGATAGGGTT 59.870 36.000 0.00 0.00 0.00 4.11
6452 7372 4.653801 AGTTTTGCTTTTGTTGGATAGGGT 59.346 37.500 0.00 0.00 0.00 4.34
6453 7373 5.213891 AGTTTTGCTTTTGTTGGATAGGG 57.786 39.130 0.00 0.00 0.00 3.53
6454 7374 6.863126 CACTAGTTTTGCTTTTGTTGGATAGG 59.137 38.462 0.00 0.00 0.00 2.57
6455 7375 6.863126 CCACTAGTTTTGCTTTTGTTGGATAG 59.137 38.462 0.00 0.00 0.00 2.08
6456 7376 6.239176 CCCACTAGTTTTGCTTTTGTTGGATA 60.239 38.462 0.00 0.00 0.00 2.59
6457 7377 5.453198 CCCACTAGTTTTGCTTTTGTTGGAT 60.453 40.000 0.00 0.00 0.00 3.41
6503 7429 2.427095 GCCTTTCCCGCAAAACAGATAT 59.573 45.455 0.00 0.00 0.00 1.63
6564 7490 1.886542 CCTTTGCCTTTACCTGGACAC 59.113 52.381 0.00 0.00 0.00 3.67
6695 7621 2.164624 ACTCTTCATCGGACGAAGGAAG 59.835 50.000 22.53 22.53 40.27 3.46
6696 7622 2.094700 CACTCTTCATCGGACGAAGGAA 60.095 50.000 13.23 5.39 40.27 3.36
6697 7623 1.472878 CACTCTTCATCGGACGAAGGA 59.527 52.381 13.23 0.99 40.27 3.36
6698 7624 1.202582 ACACTCTTCATCGGACGAAGG 59.797 52.381 13.23 7.22 40.27 3.46
6699 7625 2.638556 ACACTCTTCATCGGACGAAG 57.361 50.000 7.47 7.47 41.05 3.79
6700 7626 5.763698 AGATATACACTCTTCATCGGACGAA 59.236 40.000 0.00 0.00 0.00 3.85
6701 7627 5.306394 AGATATACACTCTTCATCGGACGA 58.694 41.667 0.00 0.00 0.00 4.20
6702 7628 5.614923 AGATATACACTCTTCATCGGACG 57.385 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.