Multiple sequence alignment - TraesCS4A01G407600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G407600 chr4A 100.000 5345 0 0 1 5345 680377652 680372308 0.000000e+00 9871.0
1 TraesCS4A01G407600 chr4D 95.245 2208 71 17 2462 4639 473816228 473814025 0.000000e+00 3465.0
2 TraesCS4A01G407600 chr4D 89.697 1582 95 22 768 2315 473817768 473816221 0.000000e+00 1956.0
3 TraesCS4A01G407600 chr4D 92.857 322 13 3 4977 5288 473813753 473813432 4.880000e-125 459.0
4 TraesCS4A01G407600 chr4D 93.204 103 7 0 4692 4794 498396835 498396733 9.270000e-33 152.0
5 TraesCS4A01G407600 chr4B 90.400 2375 130 37 768 3068 596379922 596377572 0.000000e+00 3033.0
6 TraesCS4A01G407600 chr4B 94.626 1656 67 11 3047 4697 596377118 596375480 0.000000e+00 2545.0
7 TraesCS4A01G407600 chr4B 91.000 300 8 6 5063 5345 596375363 596375066 2.330000e-103 387.0
8 TraesCS4A01G407600 chr4B 79.741 232 24 11 542 755 596380194 596379968 4.310000e-31 147.0
9 TraesCS4A01G407600 chr4B 90.196 102 5 2 4903 5004 596375448 596375352 1.560000e-25 128.0
10 TraesCS4A01G407600 chr4B 100.000 33 0 0 4792 4824 596375476 596375444 1.610000e-05 62.1
11 TraesCS4A01G407600 chr7D 91.344 543 43 3 4 545 44707874 44707335 0.000000e+00 739.0
12 TraesCS4A01G407600 chr7D 90.909 88 6 2 4815 4902 124512860 124512775 3.380000e-22 117.0
13 TraesCS4A01G407600 chr5D 90.710 549 46 4 1 544 25319466 25320014 0.000000e+00 726.0
14 TraesCS4A01G407600 chr5D 90.625 512 39 3 4 514 509544799 509544296 0.000000e+00 671.0
15 TraesCS4A01G407600 chr5D 92.453 106 8 0 4687 4792 266749460 266749355 9.270000e-33 152.0
16 TraesCS4A01G407600 chr5D 88.372 86 9 1 4823 4907 408660314 408660399 9.470000e-18 102.0
17 TraesCS4A01G407600 chr1D 90.775 542 49 1 1 541 448259394 448259935 0.000000e+00 723.0
18 TraesCS4A01G407600 chr1D 92.035 113 7 2 2316 2428 89593705 89593595 1.990000e-34 158.0
19 TraesCS4A01G407600 chr3A 89.397 547 56 2 1 545 140953723 140954269 0.000000e+00 688.0
20 TraesCS4A01G407600 chr3A 91.071 112 9 1 4682 4792 287684672 287684783 3.330000e-32 150.0
21 TraesCS4A01G407600 chr3A 88.421 95 9 2 4818 4910 1628443 1628349 4.380000e-21 113.0
22 TraesCS4A01G407600 chr6B 89.444 540 54 2 4 541 701468078 701468616 0.000000e+00 678.0
23 TraesCS4A01G407600 chr6B 94.059 101 6 0 4692 4792 219879346 219879446 2.580000e-33 154.0
24 TraesCS4A01G407600 chr6B 94.059 101 6 0 4692 4792 633054015 633054115 2.580000e-33 154.0
25 TraesCS4A01G407600 chr5B 89.174 545 55 3 4 545 629835404 629835947 0.000000e+00 676.0
26 TraesCS4A01G407600 chr5B 88.257 545 60 3 4 545 623099103 623099646 0.000000e+00 649.0
27 TraesCS4A01G407600 chr5B 87.500 80 10 0 4823 4902 559684504 559684583 5.700000e-15 93.5
28 TraesCS4A01G407600 chr1A 88.930 542 55 4 4 544 549573903 549573366 0.000000e+00 664.0
29 TraesCS4A01G407600 chrUn 89.630 135 13 1 2316 2450 298334341 298334474 2.560000e-38 171.0
30 TraesCS4A01G407600 chrUn 86.364 88 10 1 4822 4907 41907420 41907507 1.580000e-15 95.3
31 TraesCS4A01G407600 chr7B 89.630 135 13 1 2316 2450 717816654 717816521 2.560000e-38 171.0
32 TraesCS4A01G407600 chr7B 87.755 98 9 3 4821 4918 115386299 115386205 1.570000e-20 111.0
33 TraesCS4A01G407600 chr7A 93.458 107 7 0 4693 4799 203965833 203965939 5.540000e-35 159.0
34 TraesCS4A01G407600 chr3D 94.949 99 5 0 4694 4792 445342953 445343051 7.170000e-34 156.0
35 TraesCS4A01G407600 chr3D 93.939 99 6 0 4694 4792 613073355 613073453 3.330000e-32 150.0
36 TraesCS4A01G407600 chr2A 94.059 101 6 0 4692 4792 416627573 416627473 2.580000e-33 154.0
37 TraesCS4A01G407600 chr3B 88.889 90 10 0 4818 4907 688905087 688904998 1.570000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G407600 chr4A 680372308 680377652 5344 True 9871.00 9871 100.000000 1 5345 1 chr4A.!!$R1 5344
1 TraesCS4A01G407600 chr4D 473813432 473817768 4336 True 1960.00 3465 92.599667 768 5288 3 chr4D.!!$R2 4520
2 TraesCS4A01G407600 chr4B 596375066 596380194 5128 True 1050.35 3033 90.993833 542 5345 6 chr4B.!!$R1 4803
3 TraesCS4A01G407600 chr7D 44707335 44707874 539 True 739.00 739 91.344000 4 545 1 chr7D.!!$R1 541
4 TraesCS4A01G407600 chr5D 25319466 25320014 548 False 726.00 726 90.710000 1 544 1 chr5D.!!$F1 543
5 TraesCS4A01G407600 chr5D 509544296 509544799 503 True 671.00 671 90.625000 4 514 1 chr5D.!!$R2 510
6 TraesCS4A01G407600 chr1D 448259394 448259935 541 False 723.00 723 90.775000 1 541 1 chr1D.!!$F1 540
7 TraesCS4A01G407600 chr3A 140953723 140954269 546 False 688.00 688 89.397000 1 545 1 chr3A.!!$F1 544
8 TraesCS4A01G407600 chr6B 701468078 701468616 538 False 678.00 678 89.444000 4 541 1 chr6B.!!$F3 537
9 TraesCS4A01G407600 chr5B 629835404 629835947 543 False 676.00 676 89.174000 4 545 1 chr5B.!!$F3 541
10 TraesCS4A01G407600 chr5B 623099103 623099646 543 False 649.00 649 88.257000 4 545 1 chr5B.!!$F2 541
11 TraesCS4A01G407600 chr1A 549573366 549573903 537 True 664.00 664 88.930000 4 544 1 chr1A.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 663 0.038526 CTAGACGGCAGACACGGTTT 60.039 55.0 0.00 0.0 35.23 3.27 F
2173 2277 0.030235 CAATGGCATGCGAGGTGATG 59.970 55.0 12.44 0.0 0.00 3.07 F
2559 2672 0.740149 TTGCAAGCTCACAACACCAG 59.260 50.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2559 2672 0.108281 GTAGACCTTTCCGTGAGCCC 60.108 60.0 0.0 0.0 0.00 5.19 R
3619 4241 0.106619 CTAGAGGGCTGGAGTACCGT 60.107 60.0 0.0 0.0 39.42 4.83 R
4501 5124 0.108615 AACCTCCGCAATCAGACTCG 60.109 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
323 325 3.555168 GGCAACGAAAGAGGAAGAGAGAA 60.555 47.826 0.00 0.00 0.00 2.87
361 365 2.147958 ACGAGCGCCACAATTTAAAGA 58.852 42.857 2.29 0.00 0.00 2.52
364 368 3.426159 CGAGCGCCACAATTTAAAGACAT 60.426 43.478 2.29 0.00 0.00 3.06
444 449 3.920553 GATTTCCGCGCGCGCTAA 61.921 61.111 45.97 36.74 39.32 3.09
478 483 2.308039 GGAGCGTGCGAAAACGTCT 61.308 57.895 7.41 5.39 45.32 4.18
501 506 1.657538 CGCGTGCTGAAAACTCAGTTC 60.658 52.381 0.00 0.00 39.76 3.01
547 558 2.159324 GCTGTTGAAGATGCTTAAGGCC 60.159 50.000 4.29 0.00 40.92 5.19
548 559 2.424956 CTGTTGAAGATGCTTAAGGCCC 59.575 50.000 0.00 0.00 40.92 5.80
567 578 1.656652 CTCATCTAACTTGGTGGCGG 58.343 55.000 0.00 0.00 0.00 6.13
569 580 1.449601 ATCTAACTTGGTGGCGGCG 60.450 57.895 0.51 0.51 0.00 6.46
590 601 2.221286 GCTGATGCAGATCGAGAATGTG 59.779 50.000 0.00 0.00 39.41 3.21
596 607 1.595382 GATCGAGAATGTGGGCGGG 60.595 63.158 0.00 0.00 0.00 6.13
598 609 2.032860 ATCGAGAATGTGGGCGGGAG 62.033 60.000 0.00 0.00 0.00 4.30
613 624 1.306633 GGAGGGGAAATGGTGGGAC 59.693 63.158 0.00 0.00 0.00 4.46
621 632 3.883822 AATGGTGGGACGGAGGGGT 62.884 63.158 0.00 0.00 0.00 4.95
636 649 2.669240 GGTGTGGGGGTGCTAGAC 59.331 66.667 0.00 0.00 0.00 2.59
642 655 3.075005 GGGGTGCTAGACGGCAGA 61.075 66.667 0.00 0.00 43.25 4.26
643 656 2.184579 GGGTGCTAGACGGCAGAC 59.815 66.667 0.00 0.00 43.25 3.51
644 657 2.646175 GGGTGCTAGACGGCAGACA 61.646 63.158 0.00 0.00 43.25 3.41
647 660 2.202623 GCTAGACGGCAGACACGG 60.203 66.667 0.00 0.00 35.23 4.94
648 661 2.991076 GCTAGACGGCAGACACGGT 61.991 63.158 0.00 0.00 35.23 4.83
649 662 1.585006 CTAGACGGCAGACACGGTT 59.415 57.895 0.00 0.00 35.23 4.44
650 663 0.038526 CTAGACGGCAGACACGGTTT 60.039 55.000 0.00 0.00 35.23 3.27
651 664 0.319211 TAGACGGCAGACACGGTTTG 60.319 55.000 0.00 0.00 35.23 2.93
652 665 1.885850 GACGGCAGACACGGTTTGT 60.886 57.895 0.00 0.00 43.10 2.83
686 699 7.519032 TTTAGAACAAGGTTTATGGGACTTG 57.481 36.000 0.00 0.00 44.32 3.16
690 703 2.493278 CAAGGTTTATGGGACTTGGCAG 59.507 50.000 0.00 0.00 37.31 4.85
692 705 1.818674 GGTTTATGGGACTTGGCAGTG 59.181 52.381 0.00 0.00 31.22 3.66
696 709 1.620822 ATGGGACTTGGCAGTGTTTC 58.379 50.000 0.00 0.00 31.22 2.78
697 710 0.257328 TGGGACTTGGCAGTGTTTCA 59.743 50.000 0.00 0.00 31.22 2.69
698 711 1.133513 TGGGACTTGGCAGTGTTTCAT 60.134 47.619 0.00 0.00 31.22 2.57
699 712 1.963515 GGGACTTGGCAGTGTTTCATT 59.036 47.619 0.00 0.00 31.22 2.57
700 713 2.365293 GGGACTTGGCAGTGTTTCATTT 59.635 45.455 0.00 0.00 31.22 2.32
701 714 3.181466 GGGACTTGGCAGTGTTTCATTTT 60.181 43.478 0.00 0.00 31.22 1.82
702 715 4.441792 GGACTTGGCAGTGTTTCATTTTT 58.558 39.130 0.00 0.00 31.22 1.94
756 782 2.629002 GCTCGAGAAGCCCAAAACA 58.371 52.632 18.75 0.00 45.92 2.83
759 785 1.532868 CTCGAGAAGCCCAAAACACTG 59.467 52.381 6.58 0.00 0.00 3.66
760 786 0.593128 CGAGAAGCCCAAAACACTGG 59.407 55.000 0.00 0.00 36.10 4.00
799 858 3.249189 GCCCCCGATAGCCCATCA 61.249 66.667 0.00 0.00 32.71 3.07
803 862 0.182537 CCCCGATAGCCCATCAACAA 59.817 55.000 0.00 0.00 32.71 2.83
805 864 1.408127 CCCGATAGCCCATCAACAACA 60.408 52.381 0.00 0.00 32.71 3.33
806 865 2.575532 CCGATAGCCCATCAACAACAT 58.424 47.619 0.00 0.00 32.71 2.71
807 866 2.951642 CCGATAGCCCATCAACAACATT 59.048 45.455 0.00 0.00 32.71 2.71
837 898 2.360852 TCTCTCACCGGACGACCC 60.361 66.667 9.46 0.00 0.00 4.46
856 917 2.680913 CCGCCTGCCGAAACAGAAG 61.681 63.158 2.14 0.00 40.25 2.85
944 1022 1.375326 GAAACCTCCGTTGCTCCCT 59.625 57.895 0.00 0.00 30.72 4.20
999 1077 1.302033 CTGCGGTGCTTCTTCTGGT 60.302 57.895 0.00 0.00 0.00 4.00
1044 1122 3.244353 CCAAGGAATACATCGCTGGATCT 60.244 47.826 0.00 0.00 34.07 2.75
1112 1190 5.705905 CCGTGAAGGTAAATTCTCTTTCCTT 59.294 40.000 0.00 0.00 37.89 3.36
1119 1197 9.647918 AAGGTAAATTCTCTTTCCTTTCTTCTT 57.352 29.630 0.00 0.00 32.31 2.52
1127 1205 2.474410 TCCTTTCTTCTTCGCTTCCC 57.526 50.000 0.00 0.00 0.00 3.97
1131 1209 3.570125 CCTTTCTTCTTCGCTTCCCTTTT 59.430 43.478 0.00 0.00 0.00 2.27
1132 1210 4.038042 CCTTTCTTCTTCGCTTCCCTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
1141 1219 4.855340 TCGCTTCCCTTTTTATCCATCTT 58.145 39.130 0.00 0.00 0.00 2.40
1148 1226 6.081356 TCCCTTTTTATCCATCTTTTGGTGT 58.919 36.000 0.00 0.00 46.52 4.16
1152 1230 7.307930 CCTTTTTATCCATCTTTTGGTGTTTGC 60.308 37.037 0.00 0.00 46.52 3.68
1153 1231 2.791383 TCCATCTTTTGGTGTTTGCG 57.209 45.000 0.00 0.00 46.52 4.85
1154 1232 2.028130 TCCATCTTTTGGTGTTTGCGT 58.972 42.857 0.00 0.00 46.52 5.24
1155 1233 2.126467 CCATCTTTTGGTGTTTGCGTG 58.874 47.619 0.00 0.00 40.99 5.34
1156 1234 1.522258 CATCTTTTGGTGTTTGCGTGC 59.478 47.619 0.00 0.00 0.00 5.34
1157 1235 0.524392 TCTTTTGGTGTTTGCGTGCG 60.524 50.000 0.00 0.00 0.00 5.34
1158 1236 0.800300 CTTTTGGTGTTTGCGTGCGT 60.800 50.000 0.00 0.00 0.00 5.24
1159 1237 0.798771 TTTTGGTGTTTGCGTGCGTC 60.799 50.000 0.00 0.00 0.00 5.19
1191 1270 4.702131 GGTAATTTGATCTGTTGTGCTCCT 59.298 41.667 0.00 0.00 0.00 3.69
1197 1276 0.250038 TCTGTTGTGCTCCTGTGCTC 60.250 55.000 0.00 0.00 0.00 4.26
1214 1293 4.102649 GTGCTCTGGTTGTGTTTTTGTAC 58.897 43.478 0.00 0.00 0.00 2.90
1218 1297 3.105203 CTGGTTGTGTTTTTGTACGCTG 58.895 45.455 0.00 0.00 0.00 5.18
1219 1298 2.488545 TGGTTGTGTTTTTGTACGCTGT 59.511 40.909 0.00 0.00 0.00 4.40
1226 1306 3.058570 TGTTTTTGTACGCTGTGCTATGG 60.059 43.478 0.00 0.00 0.00 2.74
1293 1390 3.733727 CGTAATGCCAAAAGGAAACACAC 59.266 43.478 0.00 0.00 0.00 3.82
1305 1402 1.263217 GAAACACACGCGAAGTTGGAT 59.737 47.619 15.93 0.00 0.00 3.41
1307 1404 2.157834 ACACACGCGAAGTTGGATAA 57.842 45.000 15.93 0.00 0.00 1.75
1335 1432 6.980397 ACACAGCTTTTAAAACCAGAATTGAG 59.020 34.615 0.00 0.00 0.00 3.02
1356 1455 5.048846 AGGCCCATTACATAGGTAAACAG 57.951 43.478 3.81 0.00 42.43 3.16
1415 1515 0.588252 CATAAGCCAAATCGAGCCCG 59.412 55.000 0.00 0.00 37.07 6.13
1424 1524 2.890371 TCGAGCCCGAGTAAAGCC 59.110 61.111 0.00 0.00 40.30 4.35
1537 1637 2.886523 TGCTGCTACAAGATTGCAAGTT 59.113 40.909 4.94 0.00 38.64 2.66
1547 1647 6.108015 ACAAGATTGCAAGTTCAATGTTTGT 58.892 32.000 4.94 2.45 37.69 2.83
1550 1650 7.698836 AGATTGCAAGTTCAATGTTTGTTAC 57.301 32.000 4.94 0.00 36.85 2.50
1552 1652 6.884096 TTGCAAGTTCAATGTTTGTTACTG 57.116 33.333 0.00 0.00 30.95 2.74
1571 1671 7.013274 TGTTACTGCTTGCTTGAGAATACTTTT 59.987 33.333 0.00 0.00 0.00 2.27
1572 1672 6.006759 ACTGCTTGCTTGAGAATACTTTTC 57.993 37.500 0.00 0.00 0.00 2.29
1573 1673 5.767168 ACTGCTTGCTTGAGAATACTTTTCT 59.233 36.000 0.00 0.00 0.00 2.52
1574 1674 6.072783 ACTGCTTGCTTGAGAATACTTTTCTC 60.073 38.462 8.12 8.12 43.85 2.87
1575 1675 6.000219 TGCTTGCTTGAGAATACTTTTCTCT 59.000 36.000 14.46 0.00 43.91 3.10
1576 1676 6.488006 TGCTTGCTTGAGAATACTTTTCTCTT 59.512 34.615 14.46 0.00 43.91 2.85
1577 1677 7.013655 TGCTTGCTTGAGAATACTTTTCTCTTT 59.986 33.333 14.46 0.00 43.91 2.52
1590 1690 7.459795 ACTTTTCTCTTTTCATCATTCCCTC 57.540 36.000 0.00 0.00 0.00 4.30
1599 1699 5.815233 TTCATCATTCCCTCTATCTGTCC 57.185 43.478 0.00 0.00 0.00 4.02
1603 1703 3.384789 TCATTCCCTCTATCTGTCCGTTG 59.615 47.826 0.00 0.00 0.00 4.10
1632 1732 5.919707 CGTTCTGATGATGAAGTATGGAGAG 59.080 44.000 0.00 0.00 0.00 3.20
1697 1797 4.640201 GTGCTTAGAAATACCTGGCATTCA 59.360 41.667 0.00 0.00 32.34 2.57
1758 1858 1.528400 GCCGTCTTTTAATTCGACCGC 60.528 52.381 0.00 0.00 0.00 5.68
1795 1895 0.743097 GATTCAGGACATGCCAAGCC 59.257 55.000 8.58 0.00 40.02 4.35
1932 2034 7.604164 TGACTTAGTTCTAGGATTTTCTGCTTG 59.396 37.037 0.00 0.00 0.00 4.01
1949 2051 7.566760 TCTGCTTGACAATTAAACTCTTTGA 57.433 32.000 0.00 0.00 0.00 2.69
1952 2054 5.631096 GCTTGACAATTAAACTCTTTGAGGC 59.369 40.000 0.00 0.00 33.35 4.70
1968 2070 1.966451 GGCCCTGACCAGTTGTTCG 60.966 63.158 0.00 0.00 0.00 3.95
2012 2114 6.202188 CAGTAGTGTGTTTTTCTAATGACGGT 59.798 38.462 0.00 0.00 33.48 4.83
2111 2215 1.384191 GCCCCAAGGTCCATGTTCT 59.616 57.895 0.00 0.00 34.57 3.01
2116 2220 2.308866 CCCAAGGTCCATGTTCTAGGTT 59.691 50.000 0.00 0.00 0.00 3.50
2173 2277 0.030235 CAATGGCATGCGAGGTGATG 59.970 55.000 12.44 0.00 0.00 3.07
2197 2301 3.964031 TGGCAAACTGGGAAACTAATTGT 59.036 39.130 0.00 0.00 0.00 2.71
2314 2427 3.446442 ACTCTGCAGTTTGGATGGAAT 57.554 42.857 14.67 0.00 0.00 3.01
2322 2435 4.279420 GCAGTTTGGATGGAATTAGGGATC 59.721 45.833 0.00 0.00 0.00 3.36
2354 2467 1.672854 CGATCCACCCCGCTCTGTAA 61.673 60.000 0.00 0.00 0.00 2.41
2365 2478 2.159517 CCGCTCTGTAATCAAAACAGGC 60.160 50.000 3.60 5.35 43.69 4.85
2369 2482 4.142730 GCTCTGTAATCAAAACAGGCTCAG 60.143 45.833 3.60 0.00 43.69 3.35
2429 2542 1.892209 ACTAACTTCCCACTTTGGCG 58.108 50.000 0.00 0.00 35.79 5.69
2439 2552 1.304052 ACTTTGGCGGGCTTATGCA 60.304 52.632 2.38 0.00 41.91 3.96
2440 2553 1.315257 ACTTTGGCGGGCTTATGCAG 61.315 55.000 2.38 0.00 41.91 4.41
2444 2557 2.902343 GCGGGCTTATGCAGGACC 60.902 66.667 2.72 0.00 41.91 4.46
2559 2672 0.740149 TTGCAAGCTCACAACACCAG 59.260 50.000 0.00 0.00 0.00 4.00
2733 2846 3.146847 CACCTGGTGTTTTTCTAGTCCC 58.853 50.000 18.76 0.00 0.00 4.46
2910 3051 7.499321 TCACGAAGCTAAGGAAATTACAAAA 57.501 32.000 0.00 0.00 0.00 2.44
3038 3179 9.942850 ATTACCATTTTTCTTTGGAGTTAATGG 57.057 29.630 0.00 0.00 36.79 3.16
3327 3946 5.126061 GGTGGAATGCAAATACTTCTGTCAT 59.874 40.000 0.00 0.00 0.00 3.06
3552 4174 4.885907 AGGCATGATTCAGGTGACATTTAG 59.114 41.667 0.00 0.00 0.00 1.85
3619 4241 3.457234 GAAGGATGTGATGTATGCGACA 58.543 45.455 0.00 0.00 43.97 4.35
3703 4325 2.616510 GGCCTTCTGCAAGCTCTTCTAA 60.617 50.000 0.00 0.00 43.89 2.10
3774 4396 1.301423 TCGTGGTGGTTTAGCAACAC 58.699 50.000 17.66 17.66 38.75 3.32
3884 4506 3.988379 TTTTCTAGCAACAGTGGCTTG 57.012 42.857 8.05 6.38 42.62 4.01
3929 4551 1.673168 GAATCATGAGTGGTGGCCTC 58.327 55.000 3.32 0.00 0.00 4.70
3945 4567 0.179000 CCTCAGTGGGATGGCTGTAC 59.821 60.000 0.00 0.00 34.57 2.90
3951 4573 2.626743 AGTGGGATGGCTGTACGTATAC 59.373 50.000 0.00 0.00 0.00 1.47
3953 4575 1.068055 GGGATGGCTGTACGTATACCG 60.068 57.143 0.00 0.00 44.03 4.02
4138 4760 1.105167 CATGCCCTGCGATGGTTCAT 61.105 55.000 0.00 0.00 0.00 2.57
4188 4810 0.822164 GCCTTTGCTTGATCATGGCT 59.178 50.000 17.89 0.00 34.95 4.75
4263 4885 1.152777 TGGTCTTGGGCCAACACTG 60.153 57.895 21.64 10.38 32.29 3.66
4341 4963 4.694339 AGATTCTTGGTATAAGGCGTGAC 58.306 43.478 0.00 0.00 0.00 3.67
4348 4970 3.133183 TGGTATAAGGCGTGACTAATGCA 59.867 43.478 0.00 0.00 43.13 3.96
4370 4992 1.498865 GGATACGATGCTTGTGGCGG 61.499 60.000 0.00 0.00 45.43 6.13
4419 5042 9.801873 CAAAAGTCAATAAGAAAGTCAGGAAAA 57.198 29.630 0.00 0.00 0.00 2.29
4501 5124 6.997904 AAGTGGCTCTTATTTGTGCAGACAC 61.998 44.000 0.00 0.00 39.85 3.67
4528 5151 0.106217 ATTGCGGAGGTTATTGGGGG 60.106 55.000 0.00 0.00 0.00 5.40
4545 5168 1.407299 GGGGAATGAAGCAATTTGCCC 60.407 52.381 17.51 10.18 46.52 5.36
4577 5204 2.638556 TAACTGCTCTCACTTCGCTC 57.361 50.000 0.00 0.00 0.00 5.03
4588 5215 2.422479 TCACTTCGCTCGCTGTTACTAT 59.578 45.455 0.00 0.00 0.00 2.12
4603 5230 7.792508 CGCTGTTACTATTACGGAAATCATTTC 59.207 37.037 0.97 0.97 38.94 2.17
4632 5259 7.201723 GGTTTACGAGTTAGGGTTTTCTTTGAA 60.202 37.037 0.00 0.00 0.00 2.69
4639 5266 8.818622 AGTTAGGGTTTTCTTTGAAAAGTACT 57.181 30.769 5.81 0.00 37.31 2.73
4642 5311 6.863275 AGGGTTTTCTTTGAAAAGTACTGTG 58.137 36.000 0.00 0.00 37.31 3.66
4658 5327 8.413309 AAGTACTGTGTATGGTTAGTGTTCTA 57.587 34.615 0.00 0.00 0.00 2.10
4698 5367 7.572539 CGTTGGGGTTTTCAATAAGAAGTACTC 60.573 40.741 0.00 0.00 37.57 2.59
4699 5368 6.243148 TGGGGTTTTCAATAAGAAGTACTCC 58.757 40.000 0.00 0.00 40.74 3.85
4700 5369 5.651139 GGGGTTTTCAATAAGAAGTACTCCC 59.349 44.000 0.00 0.00 37.31 4.30
4701 5370 6.482524 GGGTTTTCAATAAGAAGTACTCCCT 58.517 40.000 0.00 0.00 37.57 4.20
4702 5371 6.598457 GGGTTTTCAATAAGAAGTACTCCCTC 59.402 42.308 0.00 0.00 37.57 4.30
4703 5372 6.598457 GGTTTTCAATAAGAAGTACTCCCTCC 59.402 42.308 0.00 0.00 37.57 4.30
4704 5373 6.945636 TTTCAATAAGAAGTACTCCCTCCA 57.054 37.500 0.00 0.00 37.57 3.86
4705 5374 7.510675 TTTCAATAAGAAGTACTCCCTCCAT 57.489 36.000 0.00 0.00 37.57 3.41
4706 5375 6.732896 TCAATAAGAAGTACTCCCTCCATC 57.267 41.667 0.00 0.00 0.00 3.51
4707 5376 5.602978 TCAATAAGAAGTACTCCCTCCATCC 59.397 44.000 0.00 0.00 0.00 3.51
4708 5377 2.480642 AGAAGTACTCCCTCCATCCC 57.519 55.000 0.00 0.00 0.00 3.85
4709 5378 1.651770 AGAAGTACTCCCTCCATCCCA 59.348 52.381 0.00 0.00 0.00 4.37
4710 5379 2.045885 AGAAGTACTCCCTCCATCCCAA 59.954 50.000 0.00 0.00 0.00 4.12
4711 5380 2.661176 AGTACTCCCTCCATCCCAAA 57.339 50.000 0.00 0.00 0.00 3.28
4712 5381 2.929301 AGTACTCCCTCCATCCCAAAA 58.071 47.619 0.00 0.00 0.00 2.44
4713 5382 3.474920 AGTACTCCCTCCATCCCAAAAT 58.525 45.455 0.00 0.00 0.00 1.82
4714 5383 4.641868 AGTACTCCCTCCATCCCAAAATA 58.358 43.478 0.00 0.00 0.00 1.40
4715 5384 5.043762 AGTACTCCCTCCATCCCAAAATAA 58.956 41.667 0.00 0.00 0.00 1.40
4716 5385 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
4717 5386 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
4718 5387 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
4719 5388 3.855599 TCCCTCCATCCCAAAATAAGTGA 59.144 43.478 0.00 0.00 0.00 3.41
4720 5389 3.954258 CCCTCCATCCCAAAATAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
4721 5390 4.325344 CCCTCCATCCCAAAATAAGTGACT 60.325 45.833 0.00 0.00 0.00 3.41
4722 5391 4.884164 CCTCCATCCCAAAATAAGTGACTC 59.116 45.833 0.00 0.00 0.00 3.36
4723 5392 5.500234 CTCCATCCCAAAATAAGTGACTCA 58.500 41.667 0.00 0.00 0.00 3.41
4724 5393 5.500234 TCCATCCCAAAATAAGTGACTCAG 58.500 41.667 0.00 0.00 0.00 3.35
4725 5394 4.096984 CCATCCCAAAATAAGTGACTCAGC 59.903 45.833 0.00 0.00 0.00 4.26
4726 5395 4.640771 TCCCAAAATAAGTGACTCAGCT 57.359 40.909 0.00 0.00 0.00 4.24
4727 5396 4.985538 TCCCAAAATAAGTGACTCAGCTT 58.014 39.130 0.00 0.00 0.00 3.74
4728 5397 5.385198 TCCCAAAATAAGTGACTCAGCTTT 58.615 37.500 0.00 0.00 0.00 3.51
4729 5398 5.241506 TCCCAAAATAAGTGACTCAGCTTTG 59.758 40.000 0.00 0.00 0.00 2.77
4730 5399 5.010012 CCCAAAATAAGTGACTCAGCTTTGT 59.990 40.000 0.00 0.00 0.00 2.83
4731 5400 6.206634 CCCAAAATAAGTGACTCAGCTTTGTA 59.793 38.462 0.00 0.00 0.00 2.41
4732 5401 7.078228 CCAAAATAAGTGACTCAGCTTTGTAC 58.922 38.462 0.00 0.00 0.00 2.90
4733 5402 7.041098 CCAAAATAAGTGACTCAGCTTTGTACT 60.041 37.037 0.00 0.00 0.00 2.73
4734 5403 8.988934 CAAAATAAGTGACTCAGCTTTGTACTA 58.011 33.333 0.00 0.00 0.00 1.82
4735 5404 8.764524 AAATAAGTGACTCAGCTTTGTACTAG 57.235 34.615 0.00 0.00 0.00 2.57
4736 5405 4.181309 AGTGACTCAGCTTTGTACTAGC 57.819 45.455 11.22 11.22 38.93 3.42
4738 5407 4.282195 AGTGACTCAGCTTTGTACTAGCTT 59.718 41.667 17.03 6.63 46.42 3.74
4739 5408 4.991687 GTGACTCAGCTTTGTACTAGCTTT 59.008 41.667 17.03 7.66 46.42 3.51
4740 5409 6.015350 AGTGACTCAGCTTTGTACTAGCTTTA 60.015 38.462 17.03 9.82 46.42 1.85
4741 5410 6.309251 GTGACTCAGCTTTGTACTAGCTTTAG 59.691 42.308 17.03 17.71 46.42 1.85
4742 5411 6.015350 TGACTCAGCTTTGTACTAGCTTTAGT 60.015 38.462 21.86 21.86 46.42 2.24
4743 5412 6.159988 ACTCAGCTTTGTACTAGCTTTAGTG 58.840 40.000 21.45 14.37 46.42 2.74
4744 5413 4.929808 TCAGCTTTGTACTAGCTTTAGTGC 59.070 41.667 17.03 0.00 46.42 4.40
4745 5414 4.690748 CAGCTTTGTACTAGCTTTAGTGCA 59.309 41.667 17.03 3.56 46.42 4.57
4746 5415 5.179368 CAGCTTTGTACTAGCTTTAGTGCAA 59.821 40.000 14.04 14.04 46.42 4.08
4752 5421 7.647907 TGTACTAGCTTTAGTGCAAAGTTAC 57.352 36.000 5.09 0.00 44.73 2.50
4753 5422 7.439381 TGTACTAGCTTTAGTGCAAAGTTACT 58.561 34.615 5.09 0.00 44.73 2.24
4754 5423 8.579006 TGTACTAGCTTTAGTGCAAAGTTACTA 58.421 33.333 5.09 0.00 44.73 1.82
4755 5424 9.583765 GTACTAGCTTTAGTGCAAAGTTACTAT 57.416 33.333 0.00 0.00 44.73 2.12
4760 5429 9.503399 AGCTTTAGTGCAAAGTTACTATAAAGT 57.497 29.630 0.00 0.00 44.73 2.66
4765 5434 8.904099 AGTGCAAAGTTACTATAAAGTTGAGT 57.096 30.769 0.00 0.00 37.15 3.41
4766 5435 8.989980 AGTGCAAAGTTACTATAAAGTTGAGTC 58.010 33.333 0.00 0.00 37.15 3.36
4767 5436 8.770828 GTGCAAAGTTACTATAAAGTTGAGTCA 58.229 33.333 0.00 0.00 37.15 3.41
4768 5437 8.770828 TGCAAAGTTACTATAAAGTTGAGTCAC 58.229 33.333 0.00 0.00 37.15 3.67
4769 5438 8.989980 GCAAAGTTACTATAAAGTTGAGTCACT 58.010 33.333 0.00 0.00 37.15 3.41
4779 5448 8.934023 ATAAAGTTGAGTCACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
4780 5449 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4781 5450 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
4782 5451 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
4783 5452 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
4784 5453 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
4785 5454 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4786 5455 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4787 5456 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4788 5457 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
4789 5458 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
4790 5459 4.475747 ACTTATTTTGGGACGGAGGGAATA 59.524 41.667 0.00 0.00 0.00 1.75
4828 5589 9.449719 TTCTATGATTGAAAGAAAAGTACTCCC 57.550 33.333 0.00 0.00 0.00 4.30
4829 5590 8.826765 TCTATGATTGAAAGAAAAGTACTCCCT 58.173 33.333 0.00 0.00 0.00 4.20
4830 5591 7.929941 ATGATTGAAAGAAAAGTACTCCCTC 57.070 36.000 0.00 0.00 0.00 4.30
4831 5592 6.238648 TGATTGAAAGAAAAGTACTCCCTCC 58.761 40.000 0.00 0.00 0.00 4.30
4832 5593 4.267349 TGAAAGAAAAGTACTCCCTCCG 57.733 45.455 0.00 0.00 0.00 4.63
4833 5594 3.644738 TGAAAGAAAAGTACTCCCTCCGT 59.355 43.478 0.00 0.00 0.00 4.69
4834 5595 3.957591 AAGAAAAGTACTCCCTCCGTC 57.042 47.619 0.00 0.00 0.00 4.79
4835 5596 2.177734 AGAAAAGTACTCCCTCCGTCC 58.822 52.381 0.00 0.00 0.00 4.79
4836 5597 1.206610 GAAAAGTACTCCCTCCGTCCC 59.793 57.143 0.00 0.00 0.00 4.46
4837 5598 0.412640 AAAGTACTCCCTCCGTCCCT 59.587 55.000 0.00 0.00 0.00 4.20
4838 5599 0.412640 AAGTACTCCCTCCGTCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
4839 5600 1.302907 AGTACTCCCTCCGTCCCTTA 58.697 55.000 0.00 0.00 0.00 2.69
4840 5601 1.642762 AGTACTCCCTCCGTCCCTTAA 59.357 52.381 0.00 0.00 0.00 1.85
4841 5602 2.246849 AGTACTCCCTCCGTCCCTTAAT 59.753 50.000 0.00 0.00 0.00 1.40
4842 5603 1.497161 ACTCCCTCCGTCCCTTAATG 58.503 55.000 0.00 0.00 0.00 1.90
4843 5604 1.273666 ACTCCCTCCGTCCCTTAATGT 60.274 52.381 0.00 0.00 0.00 2.71
4844 5605 2.023695 ACTCCCTCCGTCCCTTAATGTA 60.024 50.000 0.00 0.00 0.00 2.29
4845 5606 3.036091 CTCCCTCCGTCCCTTAATGTAA 58.964 50.000 0.00 0.00 0.00 2.41
4846 5607 3.036091 TCCCTCCGTCCCTTAATGTAAG 58.964 50.000 0.00 0.00 35.56 2.34
4847 5608 2.484947 CCCTCCGTCCCTTAATGTAAGC 60.485 54.545 0.00 0.00 34.46 3.09
4848 5609 2.484947 CCTCCGTCCCTTAATGTAAGCC 60.485 54.545 0.00 0.00 34.46 4.35
4849 5610 1.137479 TCCGTCCCTTAATGTAAGCCG 59.863 52.381 0.00 0.00 34.46 5.52
4850 5611 1.134610 CCGTCCCTTAATGTAAGCCGT 60.135 52.381 0.00 0.00 34.46 5.68
4851 5612 2.624636 CGTCCCTTAATGTAAGCCGTT 58.375 47.619 0.00 0.00 34.46 4.44
4852 5613 3.004862 CGTCCCTTAATGTAAGCCGTTT 58.995 45.455 0.00 0.00 34.46 3.60
4853 5614 3.181514 CGTCCCTTAATGTAAGCCGTTTG 60.182 47.826 0.00 0.00 34.46 2.93
4854 5615 3.754850 GTCCCTTAATGTAAGCCGTTTGT 59.245 43.478 0.00 0.00 34.46 2.83
4855 5616 4.216902 GTCCCTTAATGTAAGCCGTTTGTT 59.783 41.667 0.00 0.00 34.46 2.83
4856 5617 4.216687 TCCCTTAATGTAAGCCGTTTGTTG 59.783 41.667 0.00 0.00 34.46 3.33
4857 5618 4.216687 CCCTTAATGTAAGCCGTTTGTTGA 59.783 41.667 0.00 0.00 34.46 3.18
4858 5619 5.151389 CCTTAATGTAAGCCGTTTGTTGAC 58.849 41.667 0.00 0.00 34.46 3.18
4859 5620 5.278071 CCTTAATGTAAGCCGTTTGTTGACA 60.278 40.000 0.00 0.00 34.46 3.58
4860 5621 3.619233 ATGTAAGCCGTTTGTTGACAC 57.381 42.857 0.00 0.00 0.00 3.67
4861 5622 2.634600 TGTAAGCCGTTTGTTGACACT 58.365 42.857 0.00 0.00 0.00 3.55
4862 5623 3.794717 TGTAAGCCGTTTGTTGACACTA 58.205 40.909 0.00 0.00 0.00 2.74
4863 5624 3.805422 TGTAAGCCGTTTGTTGACACTAG 59.195 43.478 0.00 0.00 0.00 2.57
4864 5625 2.614829 AGCCGTTTGTTGACACTAGT 57.385 45.000 0.00 0.00 0.00 2.57
4865 5626 2.210116 AGCCGTTTGTTGACACTAGTG 58.790 47.619 21.44 21.44 0.00 2.74
4867 5628 3.125316 GCCGTTTGTTGACACTAGTGTA 58.875 45.455 27.98 11.50 45.05 2.90
4868 5629 3.183775 GCCGTTTGTTGACACTAGTGTAG 59.816 47.826 27.98 11.54 45.05 2.74
4869 5630 4.365723 CCGTTTGTTGACACTAGTGTAGT 58.634 43.478 27.98 6.32 45.05 2.73
4882 5643 6.760161 ACTAGTGTAGTGTTAAAAAGCGTC 57.240 37.500 0.00 0.00 37.69 5.19
4883 5644 6.510536 ACTAGTGTAGTGTTAAAAAGCGTCT 58.489 36.000 0.00 0.00 37.69 4.18
4884 5645 6.982724 ACTAGTGTAGTGTTAAAAAGCGTCTT 59.017 34.615 0.00 0.00 37.69 3.01
4885 5646 8.137437 ACTAGTGTAGTGTTAAAAAGCGTCTTA 58.863 33.333 0.00 0.00 37.69 2.10
4886 5647 7.170240 AGTGTAGTGTTAAAAAGCGTCTTAC 57.830 36.000 0.00 0.00 0.00 2.34
4887 5648 6.757947 AGTGTAGTGTTAAAAAGCGTCTTACA 59.242 34.615 0.00 0.00 0.00 2.41
4888 5649 7.440255 AGTGTAGTGTTAAAAAGCGTCTTACAT 59.560 33.333 0.00 0.00 0.00 2.29
4889 5650 8.066000 GTGTAGTGTTAAAAAGCGTCTTACATT 58.934 33.333 0.00 0.00 0.00 2.71
4890 5651 8.614346 TGTAGTGTTAAAAAGCGTCTTACATTT 58.386 29.630 0.00 0.00 0.00 2.32
4891 5652 9.442033 GTAGTGTTAAAAAGCGTCTTACATTTT 57.558 29.630 0.00 0.00 0.00 1.82
4892 5653 8.335256 AGTGTTAAAAAGCGTCTTACATTTTG 57.665 30.769 0.00 0.00 0.00 2.44
4893 5654 7.971722 AGTGTTAAAAAGCGTCTTACATTTTGT 59.028 29.630 0.00 0.00 0.00 2.83
4894 5655 8.047859 GTGTTAAAAAGCGTCTTACATTTTGTG 58.952 33.333 0.00 0.00 0.00 3.33
4895 5656 7.968956 TGTTAAAAAGCGTCTTACATTTTGTGA 59.031 29.630 0.00 0.00 0.00 3.58
4896 5657 6.806120 AAAAAGCGTCTTACATTTTGTGAC 57.194 33.333 0.00 0.00 0.00 3.67
4897 5658 3.788434 AGCGTCTTACATTTTGTGACG 57.212 42.857 13.15 13.15 44.45 4.35
4898 5659 2.478894 AGCGTCTTACATTTTGTGACGG 59.521 45.455 16.93 5.02 42.96 4.79
4899 5660 2.477375 GCGTCTTACATTTTGTGACGGA 59.523 45.455 16.93 0.00 42.96 4.69
4900 5661 3.423123 GCGTCTTACATTTTGTGACGGAG 60.423 47.826 16.93 0.00 42.96 4.63
4901 5662 3.122948 CGTCTTACATTTTGTGACGGAGG 59.877 47.826 10.80 0.00 40.69 4.30
4902 5663 4.312443 GTCTTACATTTTGTGACGGAGGA 58.688 43.478 0.00 0.00 0.00 3.71
4903 5664 4.753107 GTCTTACATTTTGTGACGGAGGAA 59.247 41.667 0.00 0.00 0.00 3.36
4904 5665 4.994852 TCTTACATTTTGTGACGGAGGAAG 59.005 41.667 0.00 0.00 0.00 3.46
4905 5666 3.208747 ACATTTTGTGACGGAGGAAGT 57.791 42.857 0.00 0.00 0.00 3.01
4906 5667 4.345859 ACATTTTGTGACGGAGGAAGTA 57.654 40.909 0.00 0.00 0.00 2.24
4915 5676 6.469410 TGTGACGGAGGAAGTATTATTGTTT 58.531 36.000 0.00 0.00 0.00 2.83
4979 5740 3.264450 AGGGTTGATAGTCTTGGTGAAGG 59.736 47.826 0.00 0.00 0.00 3.46
4985 5746 0.193574 AGTCTTGGTGAAGGGAGGGA 59.806 55.000 0.00 0.00 0.00 4.20
4988 5749 1.073319 TTGGTGAAGGGAGGGACCA 60.073 57.895 0.00 0.00 41.20 4.02
5001 5762 3.274288 GAGGGACCAATCATGAAGTGAC 58.726 50.000 0.00 0.00 40.28 3.67
5024 5785 3.393800 ACCAAGAAGTGTTCTCATGTCG 58.606 45.455 0.00 0.00 39.61 4.35
5026 5787 3.809832 CCAAGAAGTGTTCTCATGTCGTT 59.190 43.478 0.00 0.00 39.61 3.85
5110 5872 8.664798 TCATATGTAGTCATACTTTTTGTGCAC 58.335 33.333 10.75 10.75 39.03 4.57
5117 5879 5.402270 GTCATACTTTTTGTGCACACCATTC 59.598 40.000 21.56 0.00 0.00 2.67
5167 5936 1.619654 TCAAATGCACCCACTTCTGG 58.380 50.000 0.00 0.00 37.29 3.86
5299 6085 3.961849 TGCTGCCATACTTGGACATAAA 58.038 40.909 0.00 0.00 46.92 1.40
5312 6098 4.562082 TGGACATAAAAGTACGTCACTGG 58.438 43.478 0.00 0.00 37.63 4.00
5313 6099 4.039488 TGGACATAAAAGTACGTCACTGGT 59.961 41.667 0.00 0.00 37.63 4.00
5314 6100 4.992951 GGACATAAAAGTACGTCACTGGTT 59.007 41.667 0.00 0.00 37.63 3.67
5315 6101 5.467735 GGACATAAAAGTACGTCACTGGTTT 59.532 40.000 0.00 0.00 37.63 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
305 307 4.322349 CCACATTCTCTCTTCCTCTTTCGT 60.322 45.833 0.00 0.00 0.00 3.85
323 325 0.810031 GTCACGCGGCTATTCCACAT 60.810 55.000 12.47 0.00 34.01 3.21
341 344 2.095919 GTCTTTAAATTGTGGCGCTCGT 60.096 45.455 7.64 0.00 0.00 4.18
350 354 5.473039 GCTTCCAGCATGTCTTTAAATTGT 58.527 37.500 0.00 0.00 41.89 2.71
361 365 3.058160 GCACCGCTTCCAGCATGT 61.058 61.111 0.00 0.00 42.58 3.21
478 483 2.938823 GAGTTTTCAGCACGCGCGA 61.939 57.895 39.36 11.25 45.49 5.87
489 494 1.332904 CGCGTGGTGAACTGAGTTTTC 60.333 52.381 0.00 0.00 0.00 2.29
547 558 1.656652 CGCCACCAAGTTAGATGAGG 58.343 55.000 0.00 0.00 0.00 3.86
548 559 1.656652 CCGCCACCAAGTTAGATGAG 58.343 55.000 0.00 0.00 0.00 2.90
567 578 0.873312 TTCTCGATCTGCATCAGCGC 60.873 55.000 0.00 0.00 46.23 5.92
569 580 2.221286 CACATTCTCGATCTGCATCAGC 59.779 50.000 0.00 0.00 42.57 4.26
575 586 1.493950 CGCCCACATTCTCGATCTGC 61.494 60.000 0.00 0.00 0.00 4.26
578 589 1.595382 CCCGCCCACATTCTCGATC 60.595 63.158 0.00 0.00 0.00 3.69
579 590 2.032860 CTCCCGCCCACATTCTCGAT 62.033 60.000 0.00 0.00 0.00 3.59
590 601 4.522975 CCATTTCCCCTCCCGCCC 62.523 72.222 0.00 0.00 0.00 6.13
596 607 1.077716 CGTCCCACCATTTCCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
598 609 2.044352 CCGTCCCACCATTTCCCC 60.044 66.667 0.00 0.00 0.00 4.81
603 614 3.015145 CCCCTCCGTCCCACCATT 61.015 66.667 0.00 0.00 0.00 3.16
621 632 3.000819 CCGTCTAGCACCCCCACA 61.001 66.667 0.00 0.00 0.00 4.17
625 638 3.075005 TCTGCCGTCTAGCACCCC 61.075 66.667 0.00 0.00 38.00 4.95
628 641 1.801913 CGTGTCTGCCGTCTAGCAC 60.802 63.158 0.00 0.00 38.00 4.40
636 649 2.631428 CACAAACCGTGTCTGCCG 59.369 61.111 0.00 0.00 38.92 5.69
640 653 2.358322 AAATCCCACAAACCGTGTCT 57.642 45.000 0.00 0.00 44.78 3.41
660 673 8.417884 CAAGTCCCATAAACCTTGTTCTAAAAA 58.582 33.333 0.00 0.00 31.79 1.94
701 714 1.872773 ACAACCCCTGCCTTCAAAAA 58.127 45.000 0.00 0.00 0.00 1.94
702 715 1.872773 AACAACCCCTGCCTTCAAAA 58.127 45.000 0.00 0.00 0.00 2.44
703 716 1.872773 AAACAACCCCTGCCTTCAAA 58.127 45.000 0.00 0.00 0.00 2.69
704 717 1.872773 AAAACAACCCCTGCCTTCAA 58.127 45.000 0.00 0.00 0.00 2.69
725 751 4.591202 CTTCTCGAGCGGTTTTATACGTA 58.409 43.478 7.81 0.00 0.00 3.57
766 825 1.304282 GGCGGATGATATGGCCCAT 59.696 57.895 0.00 0.00 39.67 4.00
776 835 3.311110 GCTATCGGGGGCGGATGA 61.311 66.667 0.00 0.00 0.00 2.92
799 858 3.823304 GAGCAGAGAAAGGGAATGTTGTT 59.177 43.478 0.00 0.00 0.00 2.83
803 862 3.180507 AGAGAGCAGAGAAAGGGAATGT 58.819 45.455 0.00 0.00 0.00 2.71
805 864 3.197549 GTGAGAGAGCAGAGAAAGGGAAT 59.802 47.826 0.00 0.00 0.00 3.01
806 865 2.564947 GTGAGAGAGCAGAGAAAGGGAA 59.435 50.000 0.00 0.00 0.00 3.97
807 866 2.175202 GTGAGAGAGCAGAGAAAGGGA 58.825 52.381 0.00 0.00 0.00 4.20
837 898 4.697756 TCTGTTTCGGCAGGCGGG 62.698 66.667 17.49 2.57 37.12 6.13
874 944 2.710724 AAAGGAAAGCGCCGAGTCGT 62.711 55.000 12.31 0.00 0.00 4.34
944 1022 3.655486 TGAATAGGAAAACGTCGAAGCA 58.345 40.909 0.00 0.00 0.00 3.91
993 1071 1.490490 CCTAAGCCAGCCATACCAGAA 59.510 52.381 0.00 0.00 0.00 3.02
999 1077 1.445942 GTCGCCTAAGCCAGCCATA 59.554 57.895 0.00 0.00 34.57 2.74
1100 1178 5.555966 AGCGAAGAAGAAAGGAAAGAGAAT 58.444 37.500 0.00 0.00 0.00 2.40
1112 1190 5.414765 GGATAAAAAGGGAAGCGAAGAAGAA 59.585 40.000 0.00 0.00 0.00 2.52
1119 1197 4.503714 AGATGGATAAAAAGGGAAGCGA 57.496 40.909 0.00 0.00 0.00 4.93
1141 1219 1.226435 GACGCACGCAAACACCAAA 60.226 52.632 0.00 0.00 0.00 3.28
1157 1235 2.392974 AAATTACCGGCGTGCGGAC 61.393 57.895 6.01 0.00 0.00 4.79
1158 1236 2.047083 AAATTACCGGCGTGCGGA 60.047 55.556 6.01 0.00 0.00 5.54
1159 1237 1.711060 ATCAAATTACCGGCGTGCGG 61.711 55.000 6.01 0.00 0.00 5.69
1163 1241 2.396590 ACAGATCAAATTACCGGCGT 57.603 45.000 6.01 0.00 0.00 5.68
1191 1270 2.560542 ACAAAAACACAACCAGAGCACA 59.439 40.909 0.00 0.00 0.00 4.57
1197 1276 3.105203 CAGCGTACAAAAACACAACCAG 58.895 45.455 0.00 0.00 0.00 4.00
1219 1298 4.776322 AACGCTGCGGCCATAGCA 62.776 61.111 26.95 14.89 42.56 3.49
1293 1390 2.670905 TGTGTCATTATCCAACTTCGCG 59.329 45.455 0.00 0.00 0.00 5.87
1305 1402 7.575414 TCTGGTTTTAAAAGCTGTGTCATTA 57.425 32.000 25.67 9.14 37.31 1.90
1307 1404 6.463995 TTCTGGTTTTAAAAGCTGTGTCAT 57.536 33.333 25.67 0.00 37.31 3.06
1356 1455 3.057456 TCCTTGAGTTCTTCGTCACTAGC 60.057 47.826 0.00 0.00 0.00 3.42
1415 1515 1.450025 CCGTTTGAGGGGCTTTACTC 58.550 55.000 0.00 0.00 0.00 2.59
1514 1614 3.508793 ACTTGCAATCTTGTAGCAGCAAT 59.491 39.130 0.00 0.00 40.64 3.56
1537 1637 4.916983 AGCAAGCAGTAACAAACATTGA 57.083 36.364 0.00 0.00 0.00 2.57
1547 1647 7.445402 AGAAAAGTATTCTCAAGCAAGCAGTAA 59.555 33.333 0.00 0.00 0.00 2.24
1550 1650 6.149142 AGAGAAAAGTATTCTCAAGCAAGCAG 59.851 38.462 17.64 0.00 45.48 4.24
1552 1652 6.493449 AGAGAAAAGTATTCTCAAGCAAGC 57.507 37.500 17.64 0.00 45.48 4.01
1571 1671 7.346698 ACAGATAGAGGGAATGATGAAAAGAGA 59.653 37.037 0.00 0.00 0.00 3.10
1572 1672 7.507829 ACAGATAGAGGGAATGATGAAAAGAG 58.492 38.462 0.00 0.00 0.00 2.85
1573 1673 7.419518 GGACAGATAGAGGGAATGATGAAAAGA 60.420 40.741 0.00 0.00 0.00 2.52
1574 1674 6.709846 GGACAGATAGAGGGAATGATGAAAAG 59.290 42.308 0.00 0.00 0.00 2.27
1575 1675 6.595682 GGACAGATAGAGGGAATGATGAAAA 58.404 40.000 0.00 0.00 0.00 2.29
1576 1676 5.221521 CGGACAGATAGAGGGAATGATGAAA 60.222 44.000 0.00 0.00 0.00 2.69
1577 1677 4.281941 CGGACAGATAGAGGGAATGATGAA 59.718 45.833 0.00 0.00 0.00 2.57
1590 1690 3.422417 ACGATCACAACGGACAGATAG 57.578 47.619 0.00 0.00 34.93 2.08
1599 1699 3.859386 TCATCATCAGAACGATCACAACG 59.141 43.478 0.00 0.00 29.21 4.10
1603 1703 6.145209 CCATACTTCATCATCAGAACGATCAC 59.855 42.308 0.00 0.00 29.21 3.06
1697 1797 7.630242 ATTTGGAATTGAACACGACTGATAT 57.370 32.000 0.00 0.00 0.00 1.63
1913 2015 6.560253 TTGTCAAGCAGAAAATCCTAGAAC 57.440 37.500 0.00 0.00 0.00 3.01
1932 2034 4.767409 AGGGCCTCAAAGAGTTTAATTGTC 59.233 41.667 0.00 0.00 0.00 3.18
1949 2051 1.456287 GAACAACTGGTCAGGGCCT 59.544 57.895 0.00 0.00 0.00 5.19
1952 2054 2.536761 TAACGAACAACTGGTCAGGG 57.463 50.000 2.87 0.00 0.00 4.45
1968 2070 7.642978 CACTACTGTATGACGGTATGAGTTAAC 59.357 40.741 0.00 0.00 39.07 2.01
2009 2111 2.351738 GCCTCAAAAATCTCCAACACCG 60.352 50.000 0.00 0.00 0.00 4.94
2012 2114 5.324409 AGTATGCCTCAAAAATCTCCAACA 58.676 37.500 0.00 0.00 0.00 3.33
2097 2201 5.301805 ACAAAAACCTAGAACATGGACCTTG 59.698 40.000 5.84 5.84 0.00 3.61
2160 2264 2.831366 GCCAGCATCACCTCGCATG 61.831 63.158 0.00 0.00 0.00 4.06
2173 2277 1.616159 TAGTTTCCCAGTTTGCCAGC 58.384 50.000 0.00 0.00 0.00 4.85
2225 2329 9.166173 CATTCTCATACACTGGAATAAACAAGA 57.834 33.333 0.00 0.00 0.00 3.02
2235 2348 2.171237 CTGGGCATTCTCATACACTGGA 59.829 50.000 0.00 0.00 0.00 3.86
2314 2427 3.168528 GCCGCCCTGGATCCCTAA 61.169 66.667 9.90 0.00 42.00 2.69
2341 2454 2.224670 TGTTTTGATTACAGAGCGGGGT 60.225 45.455 0.00 0.00 0.00 4.95
2350 2463 3.754965 AGCTGAGCCTGTTTTGATTACA 58.245 40.909 0.00 0.00 0.00 2.41
2354 2467 4.026356 ACTAAGCTGAGCCTGTTTTGAT 57.974 40.909 0.00 0.00 0.00 2.57
2429 2542 2.195956 GGGGTCCTGCATAAGCCC 59.804 66.667 17.17 17.17 45.32 5.19
2444 2557 3.946201 CTAGGGATGCAGGGCGGG 61.946 72.222 0.00 0.00 0.00 6.13
2491 2604 7.976414 ATCTTGAATTCACATGGGGAAAATA 57.024 32.000 7.89 0.00 0.00 1.40
2492 2605 6.879367 ATCTTGAATTCACATGGGGAAAAT 57.121 33.333 7.89 0.00 0.00 1.82
2496 2609 6.078456 AGTTATCTTGAATTCACATGGGGA 57.922 37.500 7.89 0.00 0.00 4.81
2559 2672 0.108281 GTAGACCTTTCCGTGAGCCC 60.108 60.000 0.00 0.00 0.00 5.19
2733 2846 9.201127 CTCTATGGAACAGAACATGTATATGTG 57.799 37.037 5.81 0.00 45.06 3.21
2983 3124 6.169800 TCCGTTAACAAGATGAATGATGACA 58.830 36.000 6.39 0.00 0.00 3.58
3026 3167 4.374689 TTGTGCCTACCATTAACTCCAA 57.625 40.909 0.00 0.00 0.00 3.53
3038 3179 6.093633 CCTGTAGGTTCTAAAATTGTGCCTAC 59.906 42.308 10.02 10.02 44.15 3.18
3317 3936 4.851639 AAGATAAGGCCATGACAGAAGT 57.148 40.909 5.01 0.00 0.00 3.01
3552 4174 7.768120 ACTGGAGATTTCTTGAGATTACATCAC 59.232 37.037 0.00 0.00 0.00 3.06
3619 4241 0.106619 CTAGAGGGCTGGAGTACCGT 60.107 60.000 0.00 0.00 39.42 4.83
3774 4396 2.012673 GCCAATTGCCTCTCTGTACAG 58.987 52.381 17.17 17.17 0.00 2.74
3884 4506 2.099098 CCCGATATCTTTTGCCACAACC 59.901 50.000 0.34 0.00 0.00 3.77
3929 4551 0.821517 TACGTACAGCCATCCCACTG 59.178 55.000 0.00 0.00 39.86 3.66
3979 4601 8.950403 ATACTAGTCAAATTGAAGAAAAACGC 57.050 30.769 0.00 0.00 0.00 4.84
4006 4628 0.250038 TGTCCAGAACTGCAGAGTGC 60.250 55.000 23.35 6.25 45.29 4.40
4188 4810 0.742505 GCAGCATTTCAGGCATAGCA 59.257 50.000 0.00 0.00 0.00 3.49
4341 4963 3.668447 AGCATCGTATCCCTTGCATTAG 58.332 45.455 0.00 0.00 37.56 1.73
4348 4970 1.747206 GCCACAAGCATCGTATCCCTT 60.747 52.381 0.00 0.00 42.97 3.95
4370 4992 3.889538 GGGGGAATGAAGCAGGTAAATAC 59.110 47.826 0.00 0.00 0.00 1.89
4419 5042 5.014123 TCCAGTCCAGGAAACATGATTAGTT 59.986 40.000 0.00 0.00 33.93 2.24
4420 5043 4.536090 TCCAGTCCAGGAAACATGATTAGT 59.464 41.667 0.00 0.00 33.93 2.24
4427 5050 1.995542 ACCATCCAGTCCAGGAAACAT 59.004 47.619 0.00 0.00 41.92 2.71
4429 5052 3.933861 ATACCATCCAGTCCAGGAAAC 57.066 47.619 0.00 0.00 41.92 2.78
4501 5124 0.108615 AACCTCCGCAATCAGACTCG 60.109 55.000 0.00 0.00 0.00 4.18
4511 5134 1.208844 TTCCCCCAATAACCTCCGCA 61.209 55.000 0.00 0.00 0.00 5.69
4528 5151 3.323751 ACAGGGCAAATTGCTTCATTC 57.676 42.857 18.04 0.00 44.28 2.67
4545 5168 7.020010 GTGAGAGCAGTTAATCATGAAAACAG 58.980 38.462 20.32 15.47 0.00 3.16
4577 5204 6.764877 ATGATTTCCGTAATAGTAACAGCG 57.235 37.500 0.00 0.00 0.00 5.18
4603 5230 5.704053 AGAAAACCCTAACTCGTAAACCATG 59.296 40.000 0.00 0.00 0.00 3.66
4632 5259 7.732996 AGAACACTAACCATACACAGTACTTT 58.267 34.615 0.00 0.00 0.00 2.66
4639 5266 7.768582 CCAATCATAGAACACTAACCATACACA 59.231 37.037 0.00 0.00 0.00 3.72
4642 5311 8.958119 TTCCAATCATAGAACACTAACCATAC 57.042 34.615 0.00 0.00 0.00 2.39
4658 5327 2.760092 CCCCAACGTTCATTCCAATCAT 59.240 45.455 0.00 0.00 0.00 2.45
4698 5367 3.954258 GTCACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
4699 5368 4.860022 AGTCACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
4700 5369 5.500234 TGAGTCACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
4701 5370 5.500234 CTGAGTCACTTATTTTGGGATGGA 58.500 41.667 0.00 0.00 0.00 3.41
4702 5371 4.096984 GCTGAGTCACTTATTTTGGGATGG 59.903 45.833 0.00 0.00 0.00 3.51
4703 5372 4.946157 AGCTGAGTCACTTATTTTGGGATG 59.054 41.667 0.00 0.00 0.00 3.51
4704 5373 5.184892 AGCTGAGTCACTTATTTTGGGAT 57.815 39.130 0.00 0.00 0.00 3.85
4705 5374 4.640771 AGCTGAGTCACTTATTTTGGGA 57.359 40.909 0.00 0.00 0.00 4.37
4706 5375 5.010012 ACAAAGCTGAGTCACTTATTTTGGG 59.990 40.000 9.89 0.00 0.00 4.12
4707 5376 6.076981 ACAAAGCTGAGTCACTTATTTTGG 57.923 37.500 9.89 0.00 0.00 3.28
4708 5377 7.865707 AGTACAAAGCTGAGTCACTTATTTTG 58.134 34.615 7.95 5.60 0.00 2.44
4709 5378 9.209175 CTAGTACAAAGCTGAGTCACTTATTTT 57.791 33.333 7.95 0.00 0.00 1.82
4710 5379 7.332182 GCTAGTACAAAGCTGAGTCACTTATTT 59.668 37.037 11.77 0.00 37.01 1.40
4711 5380 6.814146 GCTAGTACAAAGCTGAGTCACTTATT 59.186 38.462 11.77 2.93 37.01 1.40
4712 5381 6.334202 GCTAGTACAAAGCTGAGTCACTTAT 58.666 40.000 11.77 4.10 37.01 1.73
4713 5382 5.710984 GCTAGTACAAAGCTGAGTCACTTA 58.289 41.667 11.77 0.00 37.01 2.24
4714 5383 4.561105 GCTAGTACAAAGCTGAGTCACTT 58.439 43.478 11.77 0.00 37.01 3.16
4715 5384 4.181309 GCTAGTACAAAGCTGAGTCACT 57.819 45.455 11.77 0.00 37.01 3.41
4724 5393 5.607119 TTGCACTAAAGCTAGTACAAAGC 57.393 39.130 11.24 11.24 38.10 3.51
4734 5403 9.503399 ACTTTATAGTAACTTTGCACTAAAGCT 57.497 29.630 0.00 0.00 40.17 3.74
4739 5408 9.991906 ACTCAACTTTATAGTAACTTTGCACTA 57.008 29.630 0.00 0.00 33.17 2.74
4740 5409 8.904099 ACTCAACTTTATAGTAACTTTGCACT 57.096 30.769 0.00 0.00 33.17 4.40
4741 5410 8.770828 TGACTCAACTTTATAGTAACTTTGCAC 58.229 33.333 0.00 0.00 33.17 4.57
4742 5411 8.770828 GTGACTCAACTTTATAGTAACTTTGCA 58.229 33.333 0.00 0.00 33.17 4.08
4743 5412 8.989980 AGTGACTCAACTTTATAGTAACTTTGC 58.010 33.333 0.00 0.00 32.01 3.68
4754 5423 8.793592 GTCCCAAAATAAGTGACTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
4755 5424 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
4756 5425 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4757 5426 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4758 5427 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4759 5428 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4760 5429 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4761 5430 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
4762 5431 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
4763 5432 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
4764 5433 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
4765 5434 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
4766 5435 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4767 5436 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
4768 5437 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
4769 5438 5.371472 AGATATTCCCTCCGTCCCAAAATAA 59.629 40.000 0.00 0.00 0.00 1.40
4770 5439 4.911522 AGATATTCCCTCCGTCCCAAAATA 59.088 41.667 0.00 0.00 0.00 1.40
4771 5440 3.722101 AGATATTCCCTCCGTCCCAAAAT 59.278 43.478 0.00 0.00 0.00 1.82
4772 5441 3.118038 CAGATATTCCCTCCGTCCCAAAA 60.118 47.826 0.00 0.00 0.00 2.44
4773 5442 2.438021 CAGATATTCCCTCCGTCCCAAA 59.562 50.000 0.00 0.00 0.00 3.28
4774 5443 2.047061 CAGATATTCCCTCCGTCCCAA 58.953 52.381 0.00 0.00 0.00 4.12
4775 5444 1.717032 CAGATATTCCCTCCGTCCCA 58.283 55.000 0.00 0.00 0.00 4.37
4776 5445 0.977395 CCAGATATTCCCTCCGTCCC 59.023 60.000 0.00 0.00 0.00 4.46
4777 5446 1.718280 ACCAGATATTCCCTCCGTCC 58.282 55.000 0.00 0.00 0.00 4.79
4778 5447 3.896272 ACTAACCAGATATTCCCTCCGTC 59.104 47.826 0.00 0.00 0.00 4.79
4779 5448 3.641906 CACTAACCAGATATTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
4780 5449 3.641906 ACACTAACCAGATATTCCCTCCG 59.358 47.826 0.00 0.00 0.00 4.63
4781 5450 5.367060 AGAACACTAACCAGATATTCCCTCC 59.633 44.000 0.00 0.00 0.00 4.30
4782 5451 6.487299 AGAACACTAACCAGATATTCCCTC 57.513 41.667 0.00 0.00 0.00 4.30
4783 5452 7.789831 TCATAGAACACTAACCAGATATTCCCT 59.210 37.037 0.00 0.00 0.00 4.20
4784 5453 7.963532 TCATAGAACACTAACCAGATATTCCC 58.036 38.462 0.00 0.00 0.00 3.97
4790 5459 9.388506 CTTTCAATCATAGAACACTAACCAGAT 57.611 33.333 0.00 0.00 0.00 2.90
4824 5585 1.497161 ACATTAAGGGACGGAGGGAG 58.503 55.000 0.00 0.00 0.00 4.30
4825 5586 2.852714 TACATTAAGGGACGGAGGGA 57.147 50.000 0.00 0.00 0.00 4.20
4826 5587 2.484947 GCTTACATTAAGGGACGGAGGG 60.485 54.545 0.00 0.00 36.31 4.30
4827 5588 2.484947 GGCTTACATTAAGGGACGGAGG 60.485 54.545 0.00 0.00 36.31 4.30
4828 5589 2.802057 CGGCTTACATTAAGGGACGGAG 60.802 54.545 0.00 0.00 36.31 4.63
4829 5590 1.137479 CGGCTTACATTAAGGGACGGA 59.863 52.381 0.00 0.00 36.31 4.69
4830 5591 1.134610 ACGGCTTACATTAAGGGACGG 60.135 52.381 0.00 0.00 36.31 4.79
4831 5592 2.304751 ACGGCTTACATTAAGGGACG 57.695 50.000 0.00 0.00 36.31 4.79
4832 5593 3.754850 ACAAACGGCTTACATTAAGGGAC 59.245 43.478 0.00 0.00 36.31 4.46
4833 5594 4.023726 ACAAACGGCTTACATTAAGGGA 57.976 40.909 0.00 0.00 36.31 4.20
4834 5595 4.216687 TCAACAAACGGCTTACATTAAGGG 59.783 41.667 0.00 0.00 36.31 3.95
4835 5596 5.151389 GTCAACAAACGGCTTACATTAAGG 58.849 41.667 0.00 0.00 36.31 2.69
4836 5597 5.623673 GTGTCAACAAACGGCTTACATTAAG 59.376 40.000 0.00 0.00 38.80 1.85
4837 5598 5.297278 AGTGTCAACAAACGGCTTACATTAA 59.703 36.000 0.00 0.00 0.00 1.40
4838 5599 4.817464 AGTGTCAACAAACGGCTTACATTA 59.183 37.500 0.00 0.00 0.00 1.90
4839 5600 3.630312 AGTGTCAACAAACGGCTTACATT 59.370 39.130 0.00 0.00 0.00 2.71
4840 5601 3.211045 AGTGTCAACAAACGGCTTACAT 58.789 40.909 0.00 0.00 0.00 2.29
4841 5602 2.634600 AGTGTCAACAAACGGCTTACA 58.365 42.857 0.00 0.00 0.00 2.41
4842 5603 3.805971 ACTAGTGTCAACAAACGGCTTAC 59.194 43.478 0.00 0.00 0.00 2.34
4843 5604 3.805422 CACTAGTGTCAACAAACGGCTTA 59.195 43.478 15.06 0.00 0.00 3.09
4844 5605 2.612212 CACTAGTGTCAACAAACGGCTT 59.388 45.455 15.06 0.00 0.00 4.35
4845 5606 2.210116 CACTAGTGTCAACAAACGGCT 58.790 47.619 15.06 0.00 0.00 5.52
4846 5607 1.937899 ACACTAGTGTCAACAAACGGC 59.062 47.619 22.95 0.00 40.24 5.68
4847 5608 4.365723 ACTACACTAGTGTCAACAAACGG 58.634 43.478 31.11 13.03 43.74 4.44
4859 5620 6.510536 AGACGCTTTTTAACACTACACTAGT 58.489 36.000 0.00 0.00 40.28 2.57
4860 5621 7.404139 AAGACGCTTTTTAACACTACACTAG 57.596 36.000 0.00 0.00 0.00 2.57
4861 5622 7.920151 TGTAAGACGCTTTTTAACACTACACTA 59.080 33.333 0.00 0.00 0.00 2.74
4862 5623 6.757947 TGTAAGACGCTTTTTAACACTACACT 59.242 34.615 0.00 0.00 0.00 3.55
4863 5624 6.936374 TGTAAGACGCTTTTTAACACTACAC 58.064 36.000 0.00 0.00 0.00 2.90
4864 5625 7.718272 ATGTAAGACGCTTTTTAACACTACA 57.282 32.000 0.00 0.00 0.00 2.74
4865 5626 8.998558 AAATGTAAGACGCTTTTTAACACTAC 57.001 30.769 0.00 0.00 0.00 2.73
4866 5627 9.440784 CAAAATGTAAGACGCTTTTTAACACTA 57.559 29.630 0.00 0.00 0.00 2.74
4867 5628 7.971722 ACAAAATGTAAGACGCTTTTTAACACT 59.028 29.630 0.00 0.00 0.00 3.55
4868 5629 8.047859 CACAAAATGTAAGACGCTTTTTAACAC 58.952 33.333 0.00 0.00 0.00 3.32
4869 5630 7.968956 TCACAAAATGTAAGACGCTTTTTAACA 59.031 29.630 0.00 0.00 0.00 2.41
4870 5631 8.257166 GTCACAAAATGTAAGACGCTTTTTAAC 58.743 33.333 0.00 0.00 0.00 2.01
4871 5632 7.164498 CGTCACAAAATGTAAGACGCTTTTTAA 59.836 33.333 9.44 0.00 39.00 1.52
4872 5633 6.629649 CGTCACAAAATGTAAGACGCTTTTTA 59.370 34.615 9.44 0.00 39.00 1.52
4873 5634 5.454232 CGTCACAAAATGTAAGACGCTTTTT 59.546 36.000 9.44 0.00 39.00 1.94
4874 5635 4.967575 CGTCACAAAATGTAAGACGCTTTT 59.032 37.500 9.44 0.00 39.00 2.27
4875 5636 4.523813 CGTCACAAAATGTAAGACGCTTT 58.476 39.130 9.44 0.00 39.00 3.51
4876 5637 3.059188 CCGTCACAAAATGTAAGACGCTT 60.059 43.478 14.31 0.00 42.05 4.68
4877 5638 2.478894 CCGTCACAAAATGTAAGACGCT 59.521 45.455 14.31 0.00 42.05 5.07
4878 5639 2.477375 TCCGTCACAAAATGTAAGACGC 59.523 45.455 14.31 0.00 42.05 5.19
4879 5640 3.122948 CCTCCGTCACAAAATGTAAGACG 59.877 47.826 13.31 13.31 42.62 4.18
4880 5641 4.312443 TCCTCCGTCACAAAATGTAAGAC 58.688 43.478 0.00 0.00 0.00 3.01
4881 5642 4.610605 TCCTCCGTCACAAAATGTAAGA 57.389 40.909 0.00 0.00 0.00 2.10
4882 5643 4.755123 ACTTCCTCCGTCACAAAATGTAAG 59.245 41.667 0.00 0.00 0.00 2.34
4883 5644 4.710324 ACTTCCTCCGTCACAAAATGTAA 58.290 39.130 0.00 0.00 0.00 2.41
4884 5645 4.345859 ACTTCCTCCGTCACAAAATGTA 57.654 40.909 0.00 0.00 0.00 2.29
4885 5646 3.208747 ACTTCCTCCGTCACAAAATGT 57.791 42.857 0.00 0.00 0.00 2.71
4886 5647 5.880054 AATACTTCCTCCGTCACAAAATG 57.120 39.130 0.00 0.00 0.00 2.32
4887 5648 7.610305 ACAATAATACTTCCTCCGTCACAAAAT 59.390 33.333 0.00 0.00 0.00 1.82
4888 5649 6.938030 ACAATAATACTTCCTCCGTCACAAAA 59.062 34.615 0.00 0.00 0.00 2.44
4889 5650 6.469410 ACAATAATACTTCCTCCGTCACAAA 58.531 36.000 0.00 0.00 0.00 2.83
4890 5651 6.045072 ACAATAATACTTCCTCCGTCACAA 57.955 37.500 0.00 0.00 0.00 3.33
4891 5652 5.670792 ACAATAATACTTCCTCCGTCACA 57.329 39.130 0.00 0.00 0.00 3.58
4892 5653 6.370718 ACAAACAATAATACTTCCTCCGTCAC 59.629 38.462 0.00 0.00 0.00 3.67
4893 5654 6.469410 ACAAACAATAATACTTCCTCCGTCA 58.531 36.000 0.00 0.00 0.00 4.35
4894 5655 6.980051 ACAAACAATAATACTTCCTCCGTC 57.020 37.500 0.00 0.00 0.00 4.79
4895 5656 6.938030 TGAACAAACAATAATACTTCCTCCGT 59.062 34.615 0.00 0.00 0.00 4.69
4896 5657 7.372451 TGAACAAACAATAATACTTCCTCCG 57.628 36.000 0.00 0.00 0.00 4.63
4897 5658 9.788960 GATTGAACAAACAATAATACTTCCTCC 57.211 33.333 0.00 0.00 40.03 4.30
4941 5702 1.045911 CCCTACCCAGTGAGGCTCTC 61.046 65.000 16.72 12.49 35.39 3.20
4942 5703 1.002274 CCCTACCCAGTGAGGCTCT 59.998 63.158 16.72 0.00 35.39 4.09
4943 5704 0.910088 AACCCTACCCAGTGAGGCTC 60.910 60.000 7.79 7.79 35.39 4.70
4944 5705 1.161113 AACCCTACCCAGTGAGGCT 59.839 57.895 0.00 0.00 35.39 4.58
4979 5740 2.239654 TCACTTCATGATTGGTCCCTCC 59.760 50.000 0.00 0.00 29.99 4.30
4985 5746 4.908601 TGGTAGTCACTTCATGATTGGT 57.091 40.909 0.00 0.00 40.28 3.67
4988 5749 6.652481 CACTTCTTGGTAGTCACTTCATGATT 59.348 38.462 0.00 0.00 40.28 2.57
5001 5762 4.623167 CGACATGAGAACACTTCTTGGTAG 59.377 45.833 0.00 0.00 40.87 3.18
5024 5785 7.254852 TGTTGTGAAATCTTCCTGTTTACAAC 58.745 34.615 13.38 13.38 43.19 3.32
5026 5787 6.039270 CCTGTTGTGAAATCTTCCTGTTTACA 59.961 38.462 0.00 0.00 0.00 2.41
5037 5798 3.825328 ACTTCAGCCTGTTGTGAAATCT 58.175 40.909 0.00 0.00 32.36 2.40
5041 5802 2.810400 GCCTACTTCAGCCTGTTGTGAA 60.810 50.000 0.00 0.00 0.00 3.18
5110 5872 2.917701 TAATGCACTTGCGAATGGTG 57.082 45.000 0.00 0.00 45.83 4.17
5117 5879 6.086222 ACTTTTGACTTATAATGCACTTGCG 58.914 36.000 0.00 0.00 45.83 4.85
5167 5936 4.491924 CGTAATCAAGCACGGTGACATAAC 60.492 45.833 13.29 0.00 34.57 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.