Multiple sequence alignment - TraesCS4A01G405800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G405800 chr4A 100.000 2957 0 0 1 2957 678871316 678874272 0.000000e+00 5461.0
1 TraesCS4A01G405800 chr4A 88.636 132 15 0 2819 2950 535408728 535408859 8.480000e-36 161.0
2 TraesCS4A01G405800 chr4A 87.313 134 17 0 2817 2950 525488809 525488676 1.420000e-33 154.0
3 TraesCS4A01G405800 chr4B 92.576 1832 82 24 824 2646 593422615 593424401 0.000000e+00 2580.0
4 TraesCS4A01G405800 chr4B 87.105 791 44 15 86 827 593421795 593422576 0.000000e+00 843.0
5 TraesCS4A01G405800 chr4B 94.366 213 12 0 2596 2808 593424547 593424759 7.900000e-86 327.0
6 TraesCS4A01G405800 chr4B 98.039 51 1 0 2596 2646 593424449 593424499 4.060000e-14 89.8
7 TraesCS4A01G405800 chr4D 93.592 1623 50 23 824 2419 471961392 471962987 0.000000e+00 2372.0
8 TraesCS4A01G405800 chr4D 93.812 808 33 5 27 827 471960564 471961361 0.000000e+00 1199.0
9 TraesCS4A01G405800 chr4D 93.985 266 16 0 2558 2823 471963112 471963377 1.280000e-108 403.0
10 TraesCS4A01G405800 chr4D 88.406 138 15 1 2814 2950 310477016 310477153 6.560000e-37 165.0
11 TraesCS4A01G405800 chr4D 95.349 43 2 0 2517 2559 471962988 471963030 5.290000e-08 69.4
12 TraesCS4A01G405800 chr5A 89.209 278 24 5 1085 1359 463452312 463452586 2.820000e-90 342.0
13 TraesCS4A01G405800 chr5A 89.209 139 15 0 2819 2957 555333970 555333832 1.090000e-39 174.0
14 TraesCS4A01G405800 chr5B 88.448 277 28 4 1085 1359 428461851 428462125 6.110000e-87 331.0
15 TraesCS4A01G405800 chr5D 88.087 277 29 4 1085 1359 362548004 362548278 2.840000e-85 326.0
16 TraesCS4A01G405800 chr5D 89.706 136 14 0 2822 2957 349877838 349877703 1.090000e-39 174.0
17 TraesCS4A01G405800 chr6A 90.152 132 13 0 2819 2950 23359142 23359011 3.920000e-39 172.0
18 TraesCS4A01G405800 chr6A 80.645 217 34 7 1120 1332 522227015 522226803 8.480000e-36 161.0
19 TraesCS4A01G405800 chr7A 90.076 131 13 0 2820 2950 720350868 720350738 1.410000e-38 171.0
20 TraesCS4A01G405800 chr6B 81.106 217 33 7 1120 1332 568258599 568258387 1.820000e-37 167.0
21 TraesCS4A01G405800 chr2A 88.060 134 14 2 2818 2950 5655134 5655266 1.100000e-34 158.0
22 TraesCS4A01G405800 chr2A 87.234 141 14 3 2819 2957 385441001 385440863 1.100000e-34 158.0
23 TraesCS4A01G405800 chr6D 79.724 217 36 7 1120 1332 380800280 380800068 1.840000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G405800 chr4A 678871316 678874272 2956 False 5461.00 5461 100.0000 1 2957 1 chr4A.!!$F2 2956
1 TraesCS4A01G405800 chr4B 593421795 593424759 2964 False 959.95 2580 93.0215 86 2808 4 chr4B.!!$F1 2722
2 TraesCS4A01G405800 chr4D 471960564 471963377 2813 False 1010.85 2372 94.1845 27 2823 4 chr4D.!!$F2 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 650 0.107456 AATCGCCAGAGCCAGGTATG 59.893 55.0 0.0 0.0 34.57 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 2587 0.034896 AGACGGCAGTTGTACCAAGG 59.965 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.338379 AATCGATTAAGACCTAGCCACC 57.662 45.455 9.39 0.00 0.00 4.61
26 27 2.037144 TCGATTAAGACCTAGCCACCC 58.963 52.381 0.00 0.00 0.00 4.61
27 28 1.070289 CGATTAAGACCTAGCCACCCC 59.930 57.143 0.00 0.00 0.00 4.95
28 29 2.409570 GATTAAGACCTAGCCACCCCT 58.590 52.381 0.00 0.00 0.00 4.79
29 30 2.354261 TTAAGACCTAGCCACCCCTT 57.646 50.000 0.00 0.00 0.00 3.95
30 31 2.354261 TAAGACCTAGCCACCCCTTT 57.646 50.000 0.00 0.00 0.00 3.11
55 56 4.620723 TCAAAGAGGCCTGTAGAGGATTA 58.379 43.478 12.00 0.00 42.93 1.75
57 58 3.983533 AGAGGCCTGTAGAGGATTACT 57.016 47.619 12.00 1.31 42.93 2.24
79 80 2.655001 GCGGTTTTATTTCGTTGTGCTC 59.345 45.455 0.00 0.00 0.00 4.26
82 83 5.672819 GCGGTTTTATTTCGTTGTGCTCTAT 60.673 40.000 0.00 0.00 0.00 1.98
84 85 6.027749 GGTTTTATTTCGTTGTGCTCTATGG 58.972 40.000 0.00 0.00 0.00 2.74
116 118 3.141398 TGGAAGACTCTGTGACAATTGC 58.859 45.455 5.05 0.00 0.00 3.56
126 128 2.035704 TGTGACAATTGCCATGGACAAC 59.964 45.455 18.40 7.58 0.00 3.32
133 135 4.101790 CCATGGACAACGTGCGCC 62.102 66.667 5.56 0.00 34.66 6.53
145 147 2.229247 CGTGCGCCGTAAATGTAAAA 57.771 45.000 4.18 0.00 0.00 1.52
146 148 2.572243 CGTGCGCCGTAAATGTAAAAA 58.428 42.857 4.18 0.00 0.00 1.94
149 151 3.302170 GTGCGCCGTAAATGTAAAAATGG 59.698 43.478 4.18 0.00 0.00 3.16
152 154 4.477780 CGCCGTAAATGTAAAAATGGTGT 58.522 39.130 0.00 0.00 0.00 4.16
164 166 8.877864 TGTAAAAATGGTGTAAGGAGATGAAT 57.122 30.769 0.00 0.00 0.00 2.57
170 172 6.566079 TGGTGTAAGGAGATGAATTGATCT 57.434 37.500 7.17 7.17 35.27 2.75
171 173 6.351711 TGGTGTAAGGAGATGAATTGATCTG 58.648 40.000 12.46 0.00 32.57 2.90
269 271 4.680237 CTCGGCGCTGTCCAACCA 62.680 66.667 17.37 0.00 0.00 3.67
371 376 4.590553 TGACCTCACCCCTGCCCA 62.591 66.667 0.00 0.00 0.00 5.36
394 399 2.829458 CCTCTCCTCCGTCCGTCC 60.829 72.222 0.00 0.00 0.00 4.79
395 400 3.203412 CTCTCCTCCGTCCGTCCG 61.203 72.222 0.00 0.00 0.00 4.79
396 401 3.972971 CTCTCCTCCGTCCGTCCGT 62.973 68.421 0.00 0.00 0.00 4.69
397 402 3.507009 CTCCTCCGTCCGTCCGTC 61.507 72.222 0.00 0.00 0.00 4.79
400 405 3.060615 CTCCGTCCGTCCGTCCTT 61.061 66.667 0.00 0.00 0.00 3.36
401 406 3.048941 CTCCGTCCGTCCGTCCTTC 62.049 68.421 0.00 0.00 0.00 3.46
512 517 0.399233 AGCTCCTCTATCCCCCACAC 60.399 60.000 0.00 0.00 0.00 3.82
513 518 0.691078 GCTCCTCTATCCCCCACACA 60.691 60.000 0.00 0.00 0.00 3.72
633 650 0.107456 AATCGCCAGAGCCAGGTATG 59.893 55.000 0.00 0.00 34.57 2.39
669 699 3.243401 CCCTCTGTTTTTGGTGTACTTGC 60.243 47.826 0.00 0.00 0.00 4.01
688 718 2.227149 TGCTGCTAGCTTGATGTTTGTG 59.773 45.455 17.23 0.00 42.97 3.33
692 744 3.003585 TGCTAGCTTGATGTTTGTGTGTG 59.996 43.478 17.23 0.00 0.00 3.82
733 790 6.801862 AGCTTAAATTTTAGTAGCGCAAAGTG 59.198 34.615 11.47 0.00 36.96 3.16
745 802 1.570813 GCAAAGTGTGTGCCCTTTTC 58.429 50.000 0.00 0.00 35.91 2.29
761 818 5.278660 GCCCTTTTCACATATATGGAGCTTG 60.279 44.000 16.96 5.88 0.00 4.01
812 869 1.168407 AGCGATCGGAATTGGCATGG 61.168 55.000 18.30 0.00 0.00 3.66
862 962 5.657474 AGCATTTTGTGATCTAGGCAATTG 58.343 37.500 0.00 0.00 0.00 2.32
918 1018 2.583101 TGTGTGAGGACTAGGGAGAGAT 59.417 50.000 0.00 0.00 0.00 2.75
919 1019 3.786450 TGTGTGAGGACTAGGGAGAGATA 59.214 47.826 0.00 0.00 0.00 1.98
920 1020 4.229812 TGTGTGAGGACTAGGGAGAGATAA 59.770 45.833 0.00 0.00 0.00 1.75
926 1026 4.079901 AGGACTAGGGAGAGATAAACACGA 60.080 45.833 0.00 0.00 0.00 4.35
1392 1497 2.337532 CTGGTGCTGCCTGTTTGC 59.662 61.111 0.00 0.00 38.35 3.68
1431 1538 4.324267 GCTTGGTGGTTACTTATCTGTGT 58.676 43.478 0.00 0.00 0.00 3.72
1560 1667 2.593134 GCAGCAGGCGACGATGATC 61.593 63.158 0.00 0.00 0.00 2.92
1584 1691 4.373116 GCGGTCTGCAAGGACGGA 62.373 66.667 15.16 0.00 45.45 4.69
1662 1769 2.817396 GTCTTCGAGCAGCAGGGC 60.817 66.667 0.00 0.00 0.00 5.19
1955 2062 7.872993 TGATCTCCAGAGTTACTGTAAAAAGTG 59.127 37.037 1.10 0.00 44.40 3.16
2005 2112 2.850647 GCGCGTACTTACTTTCTACTGG 59.149 50.000 8.43 0.00 0.00 4.00
2006 2113 2.850647 CGCGTACTTACTTTCTACTGGC 59.149 50.000 0.00 0.00 0.00 4.85
2007 2114 3.427233 CGCGTACTTACTTTCTACTGGCT 60.427 47.826 0.00 0.00 0.00 4.75
2008 2115 4.201851 CGCGTACTTACTTTCTACTGGCTA 60.202 45.833 0.00 0.00 0.00 3.93
2011 2118 4.373348 ACTTACTTTCTACTGGCTAGCG 57.627 45.455 9.00 0.00 0.00 4.26
2037 2144 0.238817 CTTAGCCTAGCTAGCGGACG 59.761 60.000 15.74 2.40 42.34 4.79
2045 2152 2.124236 CTAGCGGACGAGAGGGGT 60.124 66.667 0.00 0.00 0.00 4.95
2087 2207 1.753073 GAAGGGTGAATTGCCTGATGG 59.247 52.381 0.00 0.00 0.00 3.51
2136 2262 8.303780 AGGGAGGAAGTAAATGTTACTAGTAC 57.696 38.462 0.91 0.00 0.00 2.73
2159 2285 7.880059 ACTACAGTACAAAAATAACGGTCTC 57.120 36.000 0.00 0.00 0.00 3.36
2160 2286 7.664758 ACTACAGTACAAAAATAACGGTCTCT 58.335 34.615 0.00 0.00 0.00 3.10
2161 2287 8.796475 ACTACAGTACAAAAATAACGGTCTCTA 58.204 33.333 0.00 0.00 0.00 2.43
2162 2288 9.286946 CTACAGTACAAAAATAACGGTCTCTAG 57.713 37.037 0.00 0.00 0.00 2.43
2229 2360 3.013648 TCCCTACATTCTCCTGGTACCTT 59.986 47.826 14.36 0.00 0.00 3.50
2271 2402 2.672188 TCGTAACATTTTGGCGTGTG 57.328 45.000 0.00 0.00 0.00 3.82
2290 2421 1.326245 TGTCACTTCGTTGCGACAAAG 59.674 47.619 3.07 3.07 35.54 2.77
2349 2480 2.432146 TCAGACTGAAACACACTGCTCT 59.568 45.455 1.64 0.00 0.00 4.09
2365 2496 2.641321 TGCTCTGGGATAGGGATTCATG 59.359 50.000 0.00 0.00 0.00 3.07
2367 2498 3.524826 CTCTGGGATAGGGATTCATGGA 58.475 50.000 0.00 0.00 0.00 3.41
2368 2499 3.518705 CTCTGGGATAGGGATTCATGGAG 59.481 52.174 0.00 0.00 0.00 3.86
2384 2515 0.861837 GGAGCCGATGAAATACGCAG 59.138 55.000 0.00 0.00 0.00 5.18
2391 2522 4.904154 GCCGATGAAATACGCAGAAAATAC 59.096 41.667 0.00 0.00 0.00 1.89
2427 2558 5.922544 CCAATTTGTTCTAACTTGCTTCAGG 59.077 40.000 0.00 0.00 0.00 3.86
2456 2587 4.867599 GTGATCCGTCGCCCCGTC 62.868 72.222 0.00 0.00 0.00 4.79
2494 2625 6.793479 CGTCTACGGTAGAATTTCTTCTTC 57.207 41.667 18.86 2.77 38.01 2.87
2514 2645 5.234329 TCTTCTCACAAGCGTCTTTTAACAG 59.766 40.000 0.00 0.00 0.00 3.16
2544 2675 9.331106 CATCTGAATTCATCGATTGATTGATTC 57.669 33.333 8.96 15.29 35.68 2.52
2632 3042 5.834239 CTGAAAGTTGCATCAATGGTTTC 57.166 39.130 0.00 0.00 0.00 2.78
2654 3064 1.680338 AAAGGCCGCATGATAGGAAC 58.320 50.000 0.00 0.00 0.00 3.62
2670 3080 3.782889 GGAACGAAAGATCCCCAAATG 57.217 47.619 0.00 0.00 46.38 2.32
2746 3156 2.687935 GCAACCTCTTCCACAAGAACAA 59.312 45.455 0.00 0.00 38.23 2.83
2775 3185 2.949106 CTGCTTGCCCTCGTTGTG 59.051 61.111 0.00 0.00 0.00 3.33
2828 3238 8.532977 TTTTTCTTTAATGCCATTAGAGCAAC 57.467 30.769 9.53 0.00 44.83 4.17
2829 3239 7.466746 TTTCTTTAATGCCATTAGAGCAACT 57.533 32.000 9.53 0.00 44.83 3.16
2830 3240 6.683974 TCTTTAATGCCATTAGAGCAACTC 57.316 37.500 9.53 0.00 44.83 3.01
2831 3241 5.590259 TCTTTAATGCCATTAGAGCAACTCC 59.410 40.000 9.53 0.00 44.83 3.85
2832 3242 3.370840 AATGCCATTAGAGCAACTCCA 57.629 42.857 0.00 0.00 44.83 3.86
2833 3243 2.877097 TGCCATTAGAGCAACTCCAA 57.123 45.000 0.00 0.00 37.28 3.53
2834 3244 3.370840 TGCCATTAGAGCAACTCCAAT 57.629 42.857 0.00 0.00 37.28 3.16
2835 3245 3.018856 TGCCATTAGAGCAACTCCAATG 58.981 45.455 8.28 8.28 38.60 2.82
2836 3246 3.282021 GCCATTAGAGCAACTCCAATGA 58.718 45.455 14.66 0.00 40.30 2.57
2837 3247 3.314635 GCCATTAGAGCAACTCCAATGAG 59.685 47.826 14.66 7.97 40.30 2.90
2838 3248 3.881688 CCATTAGAGCAACTCCAATGAGG 59.118 47.826 14.66 0.00 40.30 3.86
2839 3249 2.698855 TAGAGCAACTCCAATGAGGC 57.301 50.000 0.00 0.00 43.29 4.70
2840 3250 0.392193 AGAGCAACTCCAATGAGGCG 60.392 55.000 0.00 0.00 43.29 5.52
2841 3251 0.391661 GAGCAACTCCAATGAGGCGA 60.392 55.000 0.00 0.00 43.29 5.54
2842 3252 0.674895 AGCAACTCCAATGAGGCGAC 60.675 55.000 0.00 0.00 43.29 5.19
2843 3253 1.648467 GCAACTCCAATGAGGCGACC 61.648 60.000 0.00 0.00 43.29 4.79
2844 3254 1.026718 CAACTCCAATGAGGCGACCC 61.027 60.000 0.00 0.00 43.29 4.46
2845 3255 1.488705 AACTCCAATGAGGCGACCCA 61.489 55.000 0.00 0.00 43.29 4.51
2846 3256 1.274703 ACTCCAATGAGGCGACCCAT 61.275 55.000 0.00 0.00 43.29 4.00
2847 3257 0.107017 CTCCAATGAGGCGACCCATT 60.107 55.000 0.00 0.00 37.29 3.16
2848 3258 0.331278 TCCAATGAGGCGACCCATTT 59.669 50.000 0.00 0.00 37.29 2.32
2849 3259 0.740737 CCAATGAGGCGACCCATTTC 59.259 55.000 0.00 0.00 31.25 2.17
2850 3260 0.378257 CAATGAGGCGACCCATTTCG 59.622 55.000 0.00 0.00 42.15 3.46
2851 3261 0.035439 AATGAGGCGACCCATTTCGT 60.035 50.000 0.00 0.00 41.26 3.85
2852 3262 0.462047 ATGAGGCGACCCATTTCGTC 60.462 55.000 0.00 0.00 44.12 4.20
2853 3263 1.814169 GAGGCGACCCATTTCGTCC 60.814 63.158 0.00 0.00 44.90 4.79
2854 3264 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
2855 3265 2.433664 GCGACCCATTTCGTCCGT 60.434 61.111 0.00 0.00 41.26 4.69
2856 3266 2.030958 GCGACCCATTTCGTCCGTT 61.031 57.895 0.00 0.00 41.26 4.44
2857 3267 1.785321 CGACCCATTTCGTCCGTTG 59.215 57.895 0.00 0.00 34.16 4.10
2858 3268 1.500396 GACCCATTTCGTCCGTTGC 59.500 57.895 0.00 0.00 0.00 4.17
2859 3269 1.918868 GACCCATTTCGTCCGTTGCC 61.919 60.000 0.00 0.00 0.00 4.52
2860 3270 2.478746 CCATTTCGTCCGTTGCCG 59.521 61.111 0.00 0.00 0.00 5.69
2861 3271 2.322081 CCATTTCGTCCGTTGCCGT 61.322 57.895 0.00 0.00 0.00 5.68
2862 3272 1.572447 CATTTCGTCCGTTGCCGTT 59.428 52.632 0.00 0.00 0.00 4.44
2863 3273 0.452122 CATTTCGTCCGTTGCCGTTC 60.452 55.000 0.00 0.00 0.00 3.95
2864 3274 1.893168 ATTTCGTCCGTTGCCGTTCG 61.893 55.000 0.00 0.00 0.00 3.95
2865 3275 3.771568 TTCGTCCGTTGCCGTTCGT 62.772 57.895 0.00 0.00 32.80 3.85
2866 3276 3.332409 CGTCCGTTGCCGTTCGTT 61.332 61.111 0.00 0.00 0.00 3.85
2867 3277 2.873604 CGTCCGTTGCCGTTCGTTT 61.874 57.895 0.00 0.00 0.00 3.60
2868 3278 1.368374 GTCCGTTGCCGTTCGTTTG 60.368 57.895 0.00 0.00 0.00 2.93
2869 3279 2.051703 CCGTTGCCGTTCGTTTGG 60.052 61.111 0.00 0.00 0.00 3.28
2870 3280 2.535788 CCGTTGCCGTTCGTTTGGA 61.536 57.895 0.00 0.00 0.00 3.53
2871 3281 1.572447 CGTTGCCGTTCGTTTGGAT 59.428 52.632 0.00 0.00 0.00 3.41
2872 3282 0.452122 CGTTGCCGTTCGTTTGGATC 60.452 55.000 0.00 0.00 0.00 3.36
2873 3283 0.452122 GTTGCCGTTCGTTTGGATCG 60.452 55.000 0.00 0.00 37.55 3.69
2876 3286 2.394136 CGTTCGTTTGGATCGGCG 59.606 61.111 0.00 0.00 34.88 6.46
2877 3287 2.097728 GTTCGTTTGGATCGGCGC 59.902 61.111 0.00 0.00 0.00 6.53
2878 3288 3.483665 TTCGTTTGGATCGGCGCG 61.484 61.111 0.00 0.00 0.00 6.86
2881 3291 3.861263 GTTTGGATCGGCGCGGAC 61.861 66.667 20.65 13.38 0.00 4.79
2882 3292 4.380781 TTTGGATCGGCGCGGACA 62.381 61.111 20.65 11.80 0.00 4.02
2883 3293 3.885538 TTTGGATCGGCGCGGACAA 62.886 57.895 20.65 16.98 0.00 3.18
2884 3294 3.885538 TTGGATCGGCGCGGACAAA 62.886 57.895 20.65 11.64 0.00 2.83
2885 3295 3.122323 GGATCGGCGCGGACAAAA 61.122 61.111 20.65 0.00 0.00 2.44
2886 3296 2.682876 GGATCGGCGCGGACAAAAA 61.683 57.895 20.65 0.00 0.00 1.94
2900 3310 4.436515 AAAAAGCCAGCCAAACGC 57.563 50.000 0.00 0.00 37.98 4.84
2901 3311 1.591327 AAAAAGCCAGCCAAACGCG 60.591 52.632 3.53 3.53 44.76 6.01
2902 3312 2.291457 AAAAAGCCAGCCAAACGCGT 62.291 50.000 5.58 5.58 44.76 6.01
2903 3313 2.677573 AAAAGCCAGCCAAACGCGTC 62.678 55.000 14.44 0.00 44.76 5.19
2906 3316 4.072088 CCAGCCAAACGCGTCGAC 62.072 66.667 14.44 5.18 44.76 4.20
2907 3317 4.072088 CAGCCAAACGCGTCGACC 62.072 66.667 14.44 1.51 44.76 4.79
2910 3320 2.968156 CCAAACGCGTCGACCCAA 60.968 61.111 14.44 0.00 0.00 4.12
2911 3321 2.535788 CCAAACGCGTCGACCCAAA 61.536 57.895 14.44 0.00 0.00 3.28
2912 3322 1.368374 CAAACGCGTCGACCCAAAC 60.368 57.895 14.44 0.00 0.00 2.93
2913 3323 2.873604 AAACGCGTCGACCCAAACG 61.874 57.895 14.44 8.81 41.68 3.60
2916 3326 3.408851 GCGTCGACCCAAACGGAC 61.409 66.667 10.58 0.00 39.24 4.79
2920 3330 3.708734 CGACCCAAACGGACGCAC 61.709 66.667 0.00 0.00 42.69 5.34
2921 3331 3.708734 GACCCAAACGGACGCACG 61.709 66.667 0.00 0.00 40.31 5.34
2931 3341 4.117372 GACGCACGTCCGCTTTCG 62.117 66.667 12.04 0.00 39.08 3.46
2932 3342 4.936823 ACGCACGTCCGCTTTCGT 62.937 61.111 0.00 0.00 40.99 3.85
2933 3343 4.117372 CGCACGTCCGCTTTCGTC 62.117 66.667 0.00 0.00 38.23 4.20
2934 3344 3.774702 GCACGTCCGCTTTCGTCC 61.775 66.667 0.00 0.00 38.23 4.79
2935 3345 3.467119 CACGTCCGCTTTCGTCCG 61.467 66.667 0.00 0.00 38.23 4.79
2936 3346 3.969802 ACGTCCGCTTTCGTCCGT 61.970 61.111 0.00 0.00 35.30 4.69
2937 3347 3.170585 CGTCCGCTTTCGTCCGTC 61.171 66.667 0.00 0.00 0.00 4.79
2938 3348 2.257676 GTCCGCTTTCGTCCGTCT 59.742 61.111 0.00 0.00 0.00 4.18
2939 3349 2.087009 GTCCGCTTTCGTCCGTCTG 61.087 63.158 0.00 0.00 0.00 3.51
2940 3350 2.049433 CCGCTTTCGTCCGTCTGT 60.049 61.111 0.00 0.00 0.00 3.41
2941 3351 2.087009 CCGCTTTCGTCCGTCTGTC 61.087 63.158 0.00 0.00 0.00 3.51
2942 3352 2.426183 CGCTTTCGTCCGTCTGTCG 61.426 63.158 0.00 0.00 39.52 4.35
2943 3353 1.081641 GCTTTCGTCCGTCTGTCGA 60.082 57.895 0.00 0.00 42.86 4.20
2944 3354 1.335697 GCTTTCGTCCGTCTGTCGAC 61.336 60.000 9.11 9.11 42.86 4.20
2945 3355 0.728466 CTTTCGTCCGTCTGTCGACC 60.728 60.000 14.12 0.00 42.86 4.79
2946 3356 2.133742 TTTCGTCCGTCTGTCGACCC 62.134 60.000 14.12 0.00 42.86 4.46
2947 3357 3.359523 CGTCCGTCTGTCGACCCA 61.360 66.667 14.12 0.00 42.86 4.51
2948 3358 2.697761 CGTCCGTCTGTCGACCCAT 61.698 63.158 14.12 0.00 42.86 4.00
2949 3359 1.590147 GTCCGTCTGTCGACCCATT 59.410 57.895 14.12 0.00 42.86 3.16
2950 3360 0.037605 GTCCGTCTGTCGACCCATTT 60.038 55.000 14.12 0.00 42.86 2.32
2951 3361 0.037697 TCCGTCTGTCGACCCATTTG 60.038 55.000 14.12 0.00 42.86 2.32
2952 3362 0.320421 CCGTCTGTCGACCCATTTGT 60.320 55.000 14.12 0.00 42.86 2.83
2953 3363 0.790207 CGTCTGTCGACCCATTTGTG 59.210 55.000 14.12 0.00 42.86 3.33
2954 3364 1.156736 GTCTGTCGACCCATTTGTGG 58.843 55.000 14.12 0.00 33.98 4.17
2955 3365 0.605319 TCTGTCGACCCATTTGTGGC 60.605 55.000 14.12 0.00 0.00 5.01
2956 3366 1.586154 CTGTCGACCCATTTGTGGCC 61.586 60.000 14.12 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.071167 GGGTGGCTAGGTCTTAATCGATT 59.929 47.826 16.15 16.15 0.00 3.34
5 6 2.633481 GGGTGGCTAGGTCTTAATCGAT 59.367 50.000 0.00 0.00 0.00 3.59
6 7 2.037144 GGGTGGCTAGGTCTTAATCGA 58.963 52.381 0.00 0.00 0.00 3.59
7 8 1.070289 GGGGTGGCTAGGTCTTAATCG 59.930 57.143 0.00 0.00 0.00 3.34
8 9 2.409570 AGGGGTGGCTAGGTCTTAATC 58.590 52.381 0.00 0.00 0.00 1.75
9 10 2.588925 AGGGGTGGCTAGGTCTTAAT 57.411 50.000 0.00 0.00 0.00 1.40
10 11 2.354261 AAGGGGTGGCTAGGTCTTAA 57.646 50.000 0.00 0.00 0.00 1.85
11 12 2.354261 AAAGGGGTGGCTAGGTCTTA 57.646 50.000 0.00 0.00 0.00 2.10
12 13 2.354261 TAAAGGGGTGGCTAGGTCTT 57.646 50.000 0.00 0.00 0.00 3.01
13 14 2.354261 TTAAAGGGGTGGCTAGGTCT 57.646 50.000 0.00 0.00 0.00 3.85
14 15 2.508300 TGATTAAAGGGGTGGCTAGGTC 59.492 50.000 0.00 0.00 0.00 3.85
15 16 2.568979 TGATTAAAGGGGTGGCTAGGT 58.431 47.619 0.00 0.00 0.00 3.08
16 17 3.662759 TTGATTAAAGGGGTGGCTAGG 57.337 47.619 0.00 0.00 0.00 3.02
17 18 4.855340 TCTTTGATTAAAGGGGTGGCTAG 58.145 43.478 9.84 0.00 42.81 3.42
18 19 4.855340 CTCTTTGATTAAAGGGGTGGCTA 58.145 43.478 9.84 0.00 42.81 3.93
19 20 3.701664 CTCTTTGATTAAAGGGGTGGCT 58.298 45.455 9.84 0.00 42.81 4.75
25 26 3.701664 ACAGGCCTCTTTGATTAAAGGG 58.298 45.455 0.00 6.50 42.82 3.95
26 27 5.745227 TCTACAGGCCTCTTTGATTAAAGG 58.255 41.667 0.00 0.00 42.81 3.11
27 28 5.819901 CCTCTACAGGCCTCTTTGATTAAAG 59.180 44.000 0.00 3.62 37.84 1.85
28 29 5.487488 TCCTCTACAGGCCTCTTTGATTAAA 59.513 40.000 0.00 0.00 40.12 1.52
29 30 5.030147 TCCTCTACAGGCCTCTTTGATTAA 58.970 41.667 0.00 0.00 40.12 1.40
30 31 4.620723 TCCTCTACAGGCCTCTTTGATTA 58.379 43.478 0.00 0.00 40.12 1.75
55 56 3.623863 CACAACGAAATAAAACCGCAGT 58.376 40.909 0.00 0.00 0.00 4.40
57 58 2.033550 AGCACAACGAAATAAAACCGCA 59.966 40.909 0.00 0.00 0.00 5.69
97 98 3.141398 TGGCAATTGTCACAGAGTCTTC 58.859 45.455 9.09 0.00 0.00 2.87
104 105 1.887854 TGTCCATGGCAATTGTCACAG 59.112 47.619 16.33 10.98 29.57 3.66
105 106 1.992538 TGTCCATGGCAATTGTCACA 58.007 45.000 16.33 5.90 29.57 3.58
106 107 2.676076 GTTGTCCATGGCAATTGTCAC 58.324 47.619 16.33 2.94 29.57 3.67
116 118 4.101790 GGCGCACGTTGTCCATGG 62.102 66.667 10.83 4.97 0.00 3.66
133 135 8.723311 TCTCCTTACACCATTTTTACATTTACG 58.277 33.333 0.00 0.00 0.00 3.18
145 147 7.501559 CAGATCAATTCATCTCCTTACACCATT 59.498 37.037 0.00 0.00 30.07 3.16
146 148 6.996879 CAGATCAATTCATCTCCTTACACCAT 59.003 38.462 0.00 0.00 30.07 3.55
149 151 6.481644 GTCCAGATCAATTCATCTCCTTACAC 59.518 42.308 0.00 0.00 30.07 2.90
152 154 5.740224 GCGTCCAGATCAATTCATCTCCTTA 60.740 44.000 0.00 0.00 30.07 2.69
164 166 0.249120 ATTCGGTGCGTCCAGATCAA 59.751 50.000 0.00 0.00 35.57 2.57
170 172 2.185867 GGCTATTCGGTGCGTCCA 59.814 61.111 0.00 0.00 35.57 4.02
171 173 2.960129 CGGCTATTCGGTGCGTCC 60.960 66.667 0.00 0.00 0.00 4.79
371 376 2.947785 ACGGAGGAGAGGGGAGGT 60.948 66.667 0.00 0.00 0.00 3.85
395 400 3.090532 ATGGGGGCGAGGAAGGAC 61.091 66.667 0.00 0.00 0.00 3.85
396 401 2.768344 GATGGGGGCGAGGAAGGA 60.768 66.667 0.00 0.00 0.00 3.36
397 402 3.878667 GGATGGGGGCGAGGAAGG 61.879 72.222 0.00 0.00 0.00 3.46
398 403 3.089874 TGGATGGGGGCGAGGAAG 61.090 66.667 0.00 0.00 0.00 3.46
399 404 2.914734 ATCTGGATGGGGGCGAGGAA 62.915 60.000 0.00 0.00 0.00 3.36
400 405 3.410788 ATCTGGATGGGGGCGAGGA 62.411 63.158 0.00 0.00 0.00 3.71
401 406 2.851102 ATCTGGATGGGGGCGAGG 60.851 66.667 0.00 0.00 0.00 4.63
512 517 5.363868 TGGGGACTGTTCTAGTTATGATCTG 59.636 44.000 0.00 0.00 40.53 2.90
513 518 5.529289 TGGGGACTGTTCTAGTTATGATCT 58.471 41.667 0.00 0.00 40.53 2.75
633 650 1.682854 CAGAGGGAGATCTCAGCTGTC 59.317 57.143 23.85 11.84 36.30 3.51
669 699 3.251729 ACACACAAACATCAAGCTAGCAG 59.748 43.478 18.83 9.26 0.00 4.24
692 744 3.247033 GCTCAAAAGCGATGATGGC 57.753 52.632 0.00 0.00 39.10 4.40
745 802 3.566742 TGCAAGCAAGCTCCATATATGTG 59.433 43.478 11.73 4.21 34.99 3.21
761 818 4.136796 TGGAATATGTGGTAGATGCAAGC 58.863 43.478 0.00 0.00 0.00 4.01
801 858 1.125633 AGGAATGCCCATGCCAATTC 58.874 50.000 7.99 0.00 39.11 2.17
812 869 1.941999 GCAAGGTGAGCAGGAATGCC 61.942 60.000 0.00 0.00 34.90 4.40
862 962 4.642429 AGGAATCACTACTTGTGTTCCAC 58.358 43.478 20.64 0.00 46.77 4.02
875 975 5.190528 ACACACATGATCCTTAGGAATCACT 59.809 40.000 4.56 0.00 34.34 3.41
878 978 5.295292 CACACACACATGATCCTTAGGAATC 59.705 44.000 4.56 4.51 34.34 2.52
879 979 5.045651 TCACACACACATGATCCTTAGGAAT 60.046 40.000 4.56 0.00 34.34 3.01
882 982 4.186926 CTCACACACACATGATCCTTAGG 58.813 47.826 0.00 0.00 0.00 2.69
883 983 4.081476 TCCTCACACACACATGATCCTTAG 60.081 45.833 0.00 0.00 0.00 2.18
884 984 3.837731 TCCTCACACACACATGATCCTTA 59.162 43.478 0.00 0.00 0.00 2.69
918 1018 4.069304 AGCATGGTTAGCTTTCGTGTTTA 58.931 39.130 0.00 0.00 39.87 2.01
919 1019 2.884639 AGCATGGTTAGCTTTCGTGTTT 59.115 40.909 0.00 0.00 39.87 2.83
920 1020 2.226437 CAGCATGGTTAGCTTTCGTGTT 59.774 45.455 0.00 0.00 41.14 3.32
947 1052 2.271497 CCAGCTTCTCCCCTGCAG 59.729 66.667 6.78 6.78 0.00 4.41
1414 1519 5.989777 ACACAGAACACAGATAAGTAACCAC 59.010 40.000 0.00 0.00 0.00 4.16
1431 1538 0.101579 TCTGAACGCGTGACACAGAA 59.898 50.000 24.89 14.71 35.20 3.02
1662 1769 3.508840 GCGCCGAACCCCATGAAG 61.509 66.667 0.00 0.00 0.00 3.02
1806 1913 1.026718 CCAGCCATTCCTCCGTGAAC 61.027 60.000 0.00 0.00 0.00 3.18
1858 1965 2.202810 CTCGGAGAAGAAGGCCGC 60.203 66.667 0.00 0.00 44.45 6.53
1860 1967 1.819905 CTCCTCGGAGAAGAAGGCC 59.180 63.158 6.58 0.00 44.53 5.19
1955 2062 2.693069 CATGGACAGTGACACCTTCTC 58.307 52.381 0.84 0.00 0.00 2.87
2037 2144 0.181350 CCACCATTGCTACCCCTCTC 59.819 60.000 0.00 0.00 0.00 3.20
2045 2152 5.508567 TCTCATCAAATTCCACCATTGCTA 58.491 37.500 0.00 0.00 0.00 3.49
2136 2262 9.286946 CTAGAGACCGTTATTTTTGTACTGTAG 57.713 37.037 0.00 0.00 0.00 2.74
2159 2285 5.844004 ACACCATCGATTAAACCTAGCTAG 58.156 41.667 14.20 14.20 0.00 3.42
2160 2286 5.864418 ACACCATCGATTAAACCTAGCTA 57.136 39.130 0.00 0.00 0.00 3.32
2161 2287 4.755266 ACACCATCGATTAAACCTAGCT 57.245 40.909 0.00 0.00 0.00 3.32
2162 2288 6.913873 TTTACACCATCGATTAAACCTAGC 57.086 37.500 0.00 0.00 0.00 3.42
2229 2360 1.892819 GCTAGCAGTGGCAGGACTCA 61.893 60.000 10.63 0.00 44.61 3.41
2271 2402 2.005188 CTTTGTCGCAACGAAGTGAC 57.995 50.000 15.21 15.21 45.00 3.67
2290 2421 3.044305 GGCGTGCACTCTGACCAC 61.044 66.667 16.19 0.00 0.00 4.16
2349 2480 1.988107 GCTCCATGAATCCCTATCCCA 59.012 52.381 0.00 0.00 0.00 4.37
2365 2496 0.861837 CTGCGTATTTCATCGGCTCC 59.138 55.000 0.00 0.00 0.00 4.70
2367 2498 2.309528 TTCTGCGTATTTCATCGGCT 57.690 45.000 0.00 0.00 0.00 5.52
2368 2499 3.398954 TTTTCTGCGTATTTCATCGGC 57.601 42.857 0.00 0.00 0.00 5.54
2404 2535 5.403466 GCCTGAAGCAAGTTAGAACAAATTG 59.597 40.000 0.00 0.00 42.97 2.32
2427 2558 1.238439 CGGATCACCAATACCCATGC 58.762 55.000 0.00 0.00 35.59 4.06
2431 2562 0.878961 GCGACGGATCACCAATACCC 60.879 60.000 0.00 0.00 35.59 3.69
2433 2564 0.878961 GGGCGACGGATCACCAATAC 60.879 60.000 0.00 0.00 35.59 1.89
2434 2565 1.444250 GGGCGACGGATCACCAATA 59.556 57.895 0.00 0.00 35.59 1.90
2456 2587 0.034896 AGACGGCAGTTGTACCAAGG 59.965 55.000 0.00 0.00 0.00 3.61
2458 2589 1.336148 CGTAGACGGCAGTTGTACCAA 60.336 52.381 0.00 0.00 35.37 3.67
2460 2591 3.025866 CGTAGACGGCAGTTGTACC 57.974 57.895 0.00 0.00 35.37 3.34
2476 2607 6.097915 TGTGAGAAGAAGAAATTCTACCGT 57.902 37.500 0.00 0.00 37.14 4.83
2488 2619 4.802876 AAAAGACGCTTGTGAGAAGAAG 57.197 40.909 0.00 0.00 0.00 2.85
2489 2620 5.583061 TGTTAAAAGACGCTTGTGAGAAGAA 59.417 36.000 0.00 0.00 0.00 2.52
2491 2622 5.403897 TGTTAAAAGACGCTTGTGAGAAG 57.596 39.130 0.00 0.00 0.00 2.85
2492 2623 4.260620 GCTGTTAAAAGACGCTTGTGAGAA 60.261 41.667 0.00 0.00 0.00 2.87
2494 2625 3.545633 GCTGTTAAAAGACGCTTGTGAG 58.454 45.455 0.00 0.00 0.00 3.51
2514 2645 1.220529 TCGATGAATTCAGATGGCGC 58.779 50.000 14.54 0.00 0.00 6.53
2594 2808 9.685828 GCAACTTTCAGTTTTACCAAATGTATA 57.314 29.630 0.00 0.00 36.03 1.47
2632 3042 0.588252 CCTATCATGCGGCCTTTTCG 59.412 55.000 0.00 0.00 0.00 3.46
2654 3064 1.331756 CGCTCATTTGGGGATCTTTCG 59.668 52.381 0.00 0.00 0.00 3.46
2670 3080 1.812571 TCCAAAAATCTTGAGCCGCTC 59.187 47.619 13.81 13.81 0.00 5.03
2746 3156 4.280494 AAGCAGCGTCGTCACCGT 62.280 61.111 0.00 0.00 35.01 4.83
2757 3167 2.980233 ACAACGAGGGCAAGCAGC 60.980 61.111 0.00 0.00 44.65 5.25
2775 3185 1.607628 GGCATCTTCACATGGAGCATC 59.392 52.381 0.00 0.00 0.00 3.91
2810 3220 4.854173 TGGAGTTGCTCTAATGGCATTAA 58.146 39.130 19.68 10.57 39.54 1.40
2813 3223 3.370840 TTGGAGTTGCTCTAATGGCAT 57.629 42.857 0.00 0.00 39.54 4.40
2823 3233 0.674895 GTCGCCTCATTGGAGTTGCT 60.675 55.000 0.00 0.00 39.64 3.91
2824 3234 1.648467 GGTCGCCTCATTGGAGTTGC 61.648 60.000 0.00 0.00 39.64 4.17
2825 3235 1.026718 GGGTCGCCTCATTGGAGTTG 61.027 60.000 0.00 0.00 39.64 3.16
2826 3236 1.299976 GGGTCGCCTCATTGGAGTT 59.700 57.895 0.00 0.00 39.64 3.01
2827 3237 1.274703 ATGGGTCGCCTCATTGGAGT 61.275 55.000 0.00 0.00 39.64 3.85
2828 3238 0.107017 AATGGGTCGCCTCATTGGAG 60.107 55.000 0.00 0.00 41.02 3.86
2829 3239 0.331278 AAATGGGTCGCCTCATTGGA 59.669 50.000 0.00 0.00 38.35 3.53
2830 3240 0.740737 GAAATGGGTCGCCTCATTGG 59.259 55.000 0.00 0.00 34.28 3.16
2831 3241 0.378257 CGAAATGGGTCGCCTCATTG 59.622 55.000 0.00 0.00 34.28 2.82
2832 3242 0.035439 ACGAAATGGGTCGCCTCATT 60.035 50.000 0.00 0.00 45.00 2.57
2833 3243 0.462047 GACGAAATGGGTCGCCTCAT 60.462 55.000 0.00 0.00 45.00 2.90
2834 3244 1.079405 GACGAAATGGGTCGCCTCA 60.079 57.895 0.00 0.00 45.00 3.86
2835 3245 1.814169 GGACGAAATGGGTCGCCTC 60.814 63.158 0.00 0.00 45.00 4.70
2836 3246 2.267961 GGACGAAATGGGTCGCCT 59.732 61.111 0.00 0.00 45.00 5.52
2837 3247 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
2838 3248 2.030958 AACGGACGAAATGGGTCGC 61.031 57.895 0.00 0.00 45.00 5.19
2839 3249 1.785321 CAACGGACGAAATGGGTCG 59.215 57.895 0.00 0.00 46.54 4.79
2840 3250 1.500396 GCAACGGACGAAATGGGTC 59.500 57.895 0.00 0.00 0.00 4.46
2841 3251 1.969589 GGCAACGGACGAAATGGGT 60.970 57.895 0.00 0.00 0.00 4.51
2842 3252 2.874751 GGCAACGGACGAAATGGG 59.125 61.111 0.00 0.00 0.00 4.00
2854 3264 0.452122 CGATCCAAACGAACGGCAAC 60.452 55.000 0.00 0.00 33.43 4.17
2855 3265 1.863491 CGATCCAAACGAACGGCAA 59.137 52.632 0.00 0.00 33.43 4.52
2856 3266 3.556625 CGATCCAAACGAACGGCA 58.443 55.556 0.00 0.00 33.43 5.69
2859 3269 2.394136 CGCCGATCCAAACGAACG 59.606 61.111 0.00 0.00 36.58 3.95
2860 3270 2.097728 GCGCCGATCCAAACGAAC 59.902 61.111 0.00 0.00 0.00 3.95
2861 3271 3.483665 CGCGCCGATCCAAACGAA 61.484 61.111 0.00 0.00 0.00 3.85
2864 3274 3.861263 GTCCGCGCCGATCCAAAC 61.861 66.667 0.00 0.00 0.00 2.93
2865 3275 3.885538 TTGTCCGCGCCGATCCAAA 62.886 57.895 0.00 0.00 0.00 3.28
2866 3276 3.885538 TTTGTCCGCGCCGATCCAA 62.886 57.895 0.00 0.00 0.00 3.53
2867 3277 3.885538 TTTTGTCCGCGCCGATCCA 62.886 57.895 0.00 0.00 0.00 3.41
2868 3278 2.682876 TTTTTGTCCGCGCCGATCC 61.683 57.895 0.00 0.00 0.00 3.36
2869 3279 2.864589 TTTTTGTCCGCGCCGATC 59.135 55.556 0.00 0.00 0.00 3.69
2883 3293 1.591327 CGCGTTTGGCTGGCTTTTT 60.591 52.632 0.00 0.00 40.44 1.94
2884 3294 2.027460 CGCGTTTGGCTGGCTTTT 59.973 55.556 0.00 0.00 40.44 2.27
2885 3295 3.194272 GACGCGTTTGGCTGGCTTT 62.194 57.895 15.53 0.00 40.44 3.51
2886 3296 3.660111 GACGCGTTTGGCTGGCTT 61.660 61.111 15.53 0.00 40.44 4.35
2889 3299 4.072088 GTCGACGCGTTTGGCTGG 62.072 66.667 15.53 0.00 40.44 4.85
2890 3300 4.072088 GGTCGACGCGTTTGGCTG 62.072 66.667 15.53 0.00 40.44 4.85
2893 3303 2.535788 TTTGGGTCGACGCGTTTGG 61.536 57.895 25.18 6.36 0.00 3.28
2894 3304 1.368374 GTTTGGGTCGACGCGTTTG 60.368 57.895 25.18 9.97 0.00 2.93
2895 3305 2.873604 CGTTTGGGTCGACGCGTTT 61.874 57.895 25.18 0.00 32.11 3.60
2896 3306 3.332409 CGTTTGGGTCGACGCGTT 61.332 61.111 25.18 0.00 32.11 4.84
2899 3309 3.408851 GTCCGTTTGGGTCGACGC 61.409 66.667 24.41 24.41 37.91 5.19
2904 3314 3.708734 CGTGCGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
2905 3315 4.534141 ACGTGCGTCCGTTTGGGT 62.534 61.111 0.00 0.00 37.96 4.51
2906 3316 3.708734 GACGTGCGTCCGTTTGGG 61.709 66.667 13.11 0.00 41.98 4.12
2914 3324 4.117372 CGAAAGCGGACGTGCGTC 62.117 66.667 29.81 21.29 43.87 5.19
2915 3325 4.936823 ACGAAAGCGGACGTGCGT 62.937 61.111 29.81 14.45 43.17 5.24
2916 3326 4.117372 GACGAAAGCGGACGTGCG 62.117 66.667 25.98 25.98 42.74 5.34
2917 3327 3.774702 GGACGAAAGCGGACGTGC 61.775 66.667 9.42 0.00 42.74 5.34
2918 3328 3.467119 CGGACGAAAGCGGACGTG 61.467 66.667 9.42 0.00 42.74 4.49
2919 3329 3.969802 ACGGACGAAAGCGGACGT 61.970 61.111 0.00 5.00 44.70 4.34
2920 3330 3.170585 GACGGACGAAAGCGGACG 61.171 66.667 0.00 0.00 43.17 4.79
2921 3331 2.087009 CAGACGGACGAAAGCGGAC 61.087 63.158 0.00 0.00 43.17 4.79
2922 3332 2.257371 CAGACGGACGAAAGCGGA 59.743 61.111 0.00 0.00 43.17 5.54
2923 3333 2.049433 ACAGACGGACGAAAGCGG 60.049 61.111 0.00 0.00 43.17 5.52
2924 3334 2.426183 CGACAGACGGACGAAAGCG 61.426 63.158 0.00 0.00 40.00 4.68
2925 3335 1.081641 TCGACAGACGGACGAAAGC 60.082 57.895 0.00 0.00 42.82 3.51
2926 3336 2.709631 GTCGACAGACGGACGAAAG 58.290 57.895 11.55 0.00 42.82 2.62
2927 3337 4.929198 GTCGACAGACGGACGAAA 57.071 55.556 11.55 0.00 42.82 3.46
2935 3345 1.156736 CCACAAATGGGTCGACAGAC 58.843 55.000 18.91 7.53 43.04 3.51
2936 3346 3.623848 CCACAAATGGGTCGACAGA 57.376 52.632 18.91 2.69 43.04 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.