Multiple sequence alignment - TraesCS4A01G405500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G405500 chr4A 100.000 2372 0 0 1 2372 678409853 678407482 0.000000e+00 4381
1 TraesCS4A01G405500 chr4A 84.197 386 37 8 1001 1386 678340935 678340574 1.040000e-93 353
2 TraesCS4A01G405500 chr4D 89.155 959 51 12 616 1564 471265802 471264887 0.000000e+00 1146
3 TraesCS4A01G405500 chr4D 87.047 386 38 7 1001 1386 470856810 470856437 2.180000e-115 425
4 TraesCS4A01G405500 chr4D 83.721 430 51 8 13 442 471266325 471265915 2.860000e-104 388
5 TraesCS4A01G405500 chr4D 83.508 382 49 7 1001 1381 471261563 471261195 6.280000e-91 344
6 TraesCS4A01G405500 chr4D 80.612 392 41 17 993 1380 471270493 471270133 1.080000e-68 270
7 TraesCS4A01G405500 chr4B 94.805 539 25 2 1028 1564 593347927 593347390 0.000000e+00 837
8 TraesCS4A01G405500 chr4B 85.492 386 44 8 1001 1386 593116731 593116358 2.210000e-105 392
9 TraesCS4A01G405500 chr4B 83.715 393 49 8 1001 1391 593342707 593342328 8.060000e-95 357
10 TraesCS4A01G405500 chr4B 96.078 204 8 0 616 819 593348136 593347933 1.360000e-87 333
11 TraesCS4A01G405500 chr4B 82.609 391 50 5 993 1380 593351400 593351025 1.760000e-86 329
12 TraesCS4A01G405500 chr7D 95.876 97 3 1 445 541 37120413 37120318 3.160000e-34 156
13 TraesCS4A01G405500 chr5D 95.876 97 3 1 445 541 163793596 163793501 3.160000e-34 156
14 TraesCS4A01G405500 chr5D 94.845 97 4 1 445 541 561948124 561948219 1.470000e-32 150
15 TraesCS4A01G405500 chr6A 94.898 98 5 0 444 541 2909198 2909295 1.140000e-33 154
16 TraesCS4A01G405500 chr7A 94.845 97 4 1 445 541 612974322 612974227 1.470000e-32 150
17 TraesCS4A01G405500 chr7A 93.878 98 5 1 444 541 699290381 699290285 1.900000e-31 147
18 TraesCS4A01G405500 chr3A 94.845 97 4 1 445 541 505539240 505539145 1.470000e-32 150
19 TraesCS4A01G405500 chr5A 94.792 96 4 1 446 541 330283900 330283806 5.280000e-32 148
20 TraesCS4A01G405500 chr5A 90.351 114 7 4 445 558 426708327 426708218 1.900000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G405500 chr4A 678407482 678409853 2371 True 4381.000000 4381 100.000 1 2372 1 chr4A.!!$R2 2371
1 TraesCS4A01G405500 chr4D 471261195 471270493 9298 True 537.000000 1146 84.249 13 1564 4 chr4D.!!$R2 1551
2 TraesCS4A01G405500 chr4B 593347390 593351400 4010 True 499.666667 837 91.164 616 1564 3 chr4B.!!$R3 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 4650 0.036294 GGTTAGCAGGTGAGACCCAC 60.036 60.0 0.0 0.0 39.75 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 6036 0.040646 TCCTGGGAACGGAGAGCTAA 59.959 55.0 0.0 0.0 39.98 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 4183 5.607477 CTTACTGTTGTCTTTGTACCTCCA 58.393 41.667 0.00 0.00 0.00 3.86
28 4185 5.048846 ACTGTTGTCTTTGTACCTCCATT 57.951 39.130 0.00 0.00 0.00 3.16
30 4187 5.531287 ACTGTTGTCTTTGTACCTCCATTTC 59.469 40.000 0.00 0.00 0.00 2.17
37 4194 4.365514 TTGTACCTCCATTTCAGCAGAA 57.634 40.909 0.00 0.00 0.00 3.02
98 4255 3.994392 GCAAAAAGTCCTCGATGTAGACA 59.006 43.478 7.50 0.00 32.82 3.41
105 4262 6.380095 AGTCCTCGATGTAGACAAGAATAC 57.620 41.667 7.50 0.00 32.82 1.89
134 4291 2.536928 GCCACGATCTACGCAACAAATC 60.537 50.000 0.00 0.00 46.94 2.17
135 4292 2.670905 CCACGATCTACGCAACAAATCA 59.329 45.455 0.00 0.00 46.94 2.57
138 4295 2.285026 CGATCTACGCAACAAATCACCG 60.285 50.000 0.00 0.00 34.51 4.94
140 4297 0.796312 CTACGCAACAAATCACCGCT 59.204 50.000 0.00 0.00 0.00 5.52
141 4298 0.793861 TACGCAACAAATCACCGCTC 59.206 50.000 0.00 0.00 0.00 5.03
149 4306 2.224523 ACAAATCACCGCTCCAGAGAAA 60.225 45.455 0.00 0.00 0.00 2.52
186 4343 1.133792 CCCATAGAACGCCCCATTTCT 60.134 52.381 0.00 0.00 36.10 2.52
194 4351 1.376609 CGCCCCATTTCTAGCCACAC 61.377 60.000 0.00 0.00 0.00 3.82
195 4352 1.376609 GCCCCATTTCTAGCCACACG 61.377 60.000 0.00 0.00 0.00 4.49
197 4354 0.251916 CCCATTTCTAGCCACACGGA 59.748 55.000 0.00 0.00 0.00 4.69
198 4355 1.339631 CCCATTTCTAGCCACACGGAA 60.340 52.381 0.00 0.00 0.00 4.30
201 4358 3.181497 CCATTTCTAGCCACACGGAATTG 60.181 47.826 0.00 0.00 0.00 2.32
202 4359 3.410631 TTTCTAGCCACACGGAATTGA 57.589 42.857 0.00 0.00 0.00 2.57
203 4360 2.672961 TCTAGCCACACGGAATTGAG 57.327 50.000 0.00 0.00 0.00 3.02
204 4361 1.207089 TCTAGCCACACGGAATTGAGG 59.793 52.381 0.00 0.00 0.00 3.86
206 4363 0.400213 AGCCACACGGAATTGAGGAA 59.600 50.000 0.00 0.00 29.11 3.36
207 4364 0.521735 GCCACACGGAATTGAGGAAC 59.478 55.000 0.00 0.00 29.11 3.62
208 4365 1.890876 CCACACGGAATTGAGGAACA 58.109 50.000 0.00 0.00 29.11 3.18
209 4366 1.535462 CCACACGGAATTGAGGAACAC 59.465 52.381 0.00 0.00 29.11 3.32
210 4367 2.217750 CACACGGAATTGAGGAACACA 58.782 47.619 0.00 0.00 0.00 3.72
211 4368 2.224079 CACACGGAATTGAGGAACACAG 59.776 50.000 0.00 0.00 0.00 3.66
212 4369 2.104111 ACACGGAATTGAGGAACACAGA 59.896 45.455 0.00 0.00 0.00 3.41
213 4370 3.138304 CACGGAATTGAGGAACACAGAA 58.862 45.455 0.00 0.00 0.00 3.02
214 4371 3.563808 CACGGAATTGAGGAACACAGAAA 59.436 43.478 0.00 0.00 0.00 2.52
215 4372 4.216257 CACGGAATTGAGGAACACAGAAAT 59.784 41.667 0.00 0.00 0.00 2.17
216 4373 4.455877 ACGGAATTGAGGAACACAGAAATC 59.544 41.667 0.00 0.00 0.00 2.17
217 4374 4.697352 CGGAATTGAGGAACACAGAAATCT 59.303 41.667 0.00 0.00 0.00 2.40
218 4375 5.163814 CGGAATTGAGGAACACAGAAATCTC 60.164 44.000 0.00 0.00 0.00 2.75
219 4376 5.707298 GGAATTGAGGAACACAGAAATCTCA 59.293 40.000 0.00 0.00 0.00 3.27
220 4377 6.376581 GGAATTGAGGAACACAGAAATCTCAT 59.623 38.462 0.00 0.00 32.33 2.90
221 4378 7.554118 GGAATTGAGGAACACAGAAATCTCATA 59.446 37.037 0.00 0.00 32.33 2.15
222 4379 7.856145 ATTGAGGAACACAGAAATCTCATAC 57.144 36.000 0.00 0.00 32.33 2.39
223 4380 6.358974 TGAGGAACACAGAAATCTCATACA 57.641 37.500 0.00 0.00 0.00 2.29
224 4381 6.950842 TGAGGAACACAGAAATCTCATACAT 58.049 36.000 0.00 0.00 0.00 2.29
249 4406 1.804748 CAACAAGTCGGAAACTAGCCC 59.195 52.381 0.00 0.00 37.17 5.19
262 4419 1.270678 ACTAGCCCACTTTCGTTGGTC 60.271 52.381 0.00 0.00 0.00 4.02
264 4421 2.613506 GCCCACTTTCGTTGGTCGG 61.614 63.158 0.00 0.00 40.32 4.79
285 4442 2.033194 CCGGAGCCGAAGAACCAAC 61.033 63.158 11.05 0.00 42.83 3.77
286 4443 1.301401 CGGAGCCGAAGAACCAACA 60.301 57.895 2.00 0.00 42.83 3.33
287 4444 0.673644 CGGAGCCGAAGAACCAACAT 60.674 55.000 2.00 0.00 42.83 2.71
351 4508 3.466836 TCATTAGAGGCAGCAATAACCG 58.533 45.455 0.00 0.00 0.00 4.44
382 4539 4.929819 AATAAACTTCCAACACCACCAC 57.070 40.909 0.00 0.00 0.00 4.16
413 4570 4.446719 GCAAAGAAATTGGAAAGCTCACAG 59.553 41.667 0.00 0.00 39.54 3.66
416 4573 6.469782 AAGAAATTGGAAAGCTCACAGAAA 57.530 33.333 0.00 0.00 0.00 2.52
433 4590 2.761208 AGAAAGCTAGCCACACGACTAT 59.239 45.455 12.13 0.00 0.00 2.12
439 4596 2.139323 AGCCACACGACTATCCTACA 57.861 50.000 0.00 0.00 0.00 2.74
443 4600 3.615592 GCCACACGACTATCCTACAAACA 60.616 47.826 0.00 0.00 0.00 2.83
445 4602 4.992319 CCACACGACTATCCTACAAACAAA 59.008 41.667 0.00 0.00 0.00 2.83
446 4603 5.467399 CCACACGACTATCCTACAAACAAAA 59.533 40.000 0.00 0.00 0.00 2.44
476 4633 2.526628 AGACCAGGTCTCACGGGT 59.473 61.111 17.31 0.00 38.71 5.28
480 4637 1.218316 CCAGGTCTCACGGGTTAGC 59.782 63.158 0.00 0.00 0.00 3.09
481 4638 1.541310 CCAGGTCTCACGGGTTAGCA 61.541 60.000 0.00 0.00 0.00 3.49
482 4639 0.108615 CAGGTCTCACGGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
483 4640 1.218316 GGTCTCACGGGTTAGCAGG 59.782 63.158 0.00 0.00 0.00 4.85
484 4641 1.542187 GGTCTCACGGGTTAGCAGGT 61.542 60.000 0.00 0.00 0.00 4.00
489 4646 0.389948 CACGGGTTAGCAGGTGAGAC 60.390 60.000 0.00 0.00 32.23 3.36
491 4648 1.602771 GGGTTAGCAGGTGAGACCC 59.397 63.158 5.28 5.28 39.75 4.46
492 4649 2.372852 GGTTAGCAGGTGAGACCCA 58.627 57.895 0.00 0.00 39.75 4.51
493 4650 0.036294 GGTTAGCAGGTGAGACCCAC 60.036 60.000 0.00 0.00 39.75 4.61
501 4658 1.604378 GTGAGACCCACCCTGATGG 59.396 63.158 0.00 0.00 39.86 3.51
502 4659 0.909610 GTGAGACCCACCCTGATGGA 60.910 60.000 0.00 0.00 43.02 3.41
504 4661 0.471617 GAGACCCACCCTGATGGATG 59.528 60.000 0.00 0.00 43.02 3.51
505 4662 0.044702 AGACCCACCCTGATGGATGA 59.955 55.000 0.00 0.00 43.02 2.92
506 4663 0.181350 GACCCACCCTGATGGATGAC 59.819 60.000 0.00 0.00 43.02 3.06
507 4664 0.549902 ACCCACCCTGATGGATGACA 60.550 55.000 0.00 0.00 43.02 3.58
508 4665 0.107017 CCCACCCTGATGGATGACAC 60.107 60.000 0.00 0.00 43.02 3.67
510 4667 0.250234 CACCCTGATGGATGACACGT 59.750 55.000 0.00 0.00 38.00 4.49
512 4669 0.536724 CCCTGATGGATGACACGTGA 59.463 55.000 25.01 0.00 35.39 4.35
513 4670 1.645034 CCTGATGGATGACACGTGAC 58.355 55.000 25.01 17.68 34.57 3.67
516 4673 3.264947 CTGATGGATGACACGTGACATT 58.735 45.455 29.08 16.96 31.08 2.71
517 4674 3.261580 TGATGGATGACACGTGACATTC 58.738 45.455 29.08 27.59 31.08 2.67
533 4690 7.269435 GTGACATTCACAAATCATAAAGCAC 57.731 36.000 1.34 0.00 46.22 4.40
534 4691 6.308766 GTGACATTCACAAATCATAAAGCACC 59.691 38.462 1.34 0.00 46.22 5.01
536 4693 7.392953 TGACATTCACAAATCATAAAGCACCTA 59.607 33.333 0.00 0.00 0.00 3.08
537 4694 8.121305 ACATTCACAAATCATAAAGCACCTAA 57.879 30.769 0.00 0.00 0.00 2.69
538 4695 8.752187 ACATTCACAAATCATAAAGCACCTAAT 58.248 29.630 0.00 0.00 0.00 1.73
539 4696 9.241317 CATTCACAAATCATAAAGCACCTAATC 57.759 33.333 0.00 0.00 0.00 1.75
540 4697 8.579850 TTCACAAATCATAAAGCACCTAATCT 57.420 30.769 0.00 0.00 0.00 2.40
541 4698 7.988737 TCACAAATCATAAAGCACCTAATCTG 58.011 34.615 0.00 0.00 0.00 2.90
542 4699 6.694411 CACAAATCATAAAGCACCTAATCTGC 59.306 38.462 0.00 0.00 34.63 4.26
543 4700 6.183360 ACAAATCATAAAGCACCTAATCTGCC 60.183 38.462 0.00 0.00 35.01 4.85
545 4702 4.708177 TCATAAAGCACCTAATCTGCCTC 58.292 43.478 0.00 0.00 35.01 4.70
546 4703 4.164030 TCATAAAGCACCTAATCTGCCTCA 59.836 41.667 0.00 0.00 35.01 3.86
547 4704 3.659183 AAAGCACCTAATCTGCCTCAT 57.341 42.857 0.00 0.00 35.01 2.90
550 4707 3.973425 AGCACCTAATCTGCCTCATTTT 58.027 40.909 0.00 0.00 35.01 1.82
552 4709 3.067320 GCACCTAATCTGCCTCATTTTCC 59.933 47.826 0.00 0.00 0.00 3.13
553 4710 3.633986 CACCTAATCTGCCTCATTTTCCC 59.366 47.826 0.00 0.00 0.00 3.97
554 4711 3.529319 ACCTAATCTGCCTCATTTTCCCT 59.471 43.478 0.00 0.00 0.00 4.20
555 4712 3.887716 CCTAATCTGCCTCATTTTCCCTG 59.112 47.826 0.00 0.00 0.00 4.45
556 4713 3.744940 AATCTGCCTCATTTTCCCTGA 57.255 42.857 0.00 0.00 0.00 3.86
558 4715 3.287867 TCTGCCTCATTTTCCCTGATC 57.712 47.619 0.00 0.00 0.00 2.92
559 4716 2.577563 TCTGCCTCATTTTCCCTGATCA 59.422 45.455 0.00 0.00 0.00 2.92
560 4717 3.010472 TCTGCCTCATTTTCCCTGATCAA 59.990 43.478 0.00 0.00 0.00 2.57
561 4718 3.765511 CTGCCTCATTTTCCCTGATCAAA 59.234 43.478 0.00 0.00 0.00 2.69
562 4719 4.355549 TGCCTCATTTTCCCTGATCAAAT 58.644 39.130 0.00 0.00 0.00 2.32
563 4720 5.517924 TGCCTCATTTTCCCTGATCAAATA 58.482 37.500 0.00 0.00 0.00 1.40
564 4721 5.360714 TGCCTCATTTTCCCTGATCAAATAC 59.639 40.000 0.00 0.00 0.00 1.89
565 4722 5.221322 GCCTCATTTTCCCTGATCAAATACC 60.221 44.000 0.00 0.00 0.00 2.73
568 4725 5.893255 TCATTTTCCCTGATCAAATACCTGG 59.107 40.000 0.00 0.00 0.00 4.45
569 4726 4.946160 TTTCCCTGATCAAATACCTGGT 57.054 40.909 4.05 4.05 0.00 4.00
570 4727 3.931907 TCCCTGATCAAATACCTGGTG 57.068 47.619 10.23 0.00 0.00 4.17
571 4728 2.092429 TCCCTGATCAAATACCTGGTGC 60.092 50.000 10.23 0.00 0.00 5.01
572 4729 2.301346 CCTGATCAAATACCTGGTGCC 58.699 52.381 10.23 0.00 0.00 5.01
573 4730 1.942657 CTGATCAAATACCTGGTGCCG 59.057 52.381 10.23 0.00 0.00 5.69
574 4731 1.557371 TGATCAAATACCTGGTGCCGA 59.443 47.619 10.23 1.03 0.00 5.54
577 4734 1.626321 TCAAATACCTGGTGCCGAAGA 59.374 47.619 10.23 0.00 0.00 2.87
579 4736 2.614057 CAAATACCTGGTGCCGAAGATC 59.386 50.000 10.23 0.00 0.00 2.75
580 4737 0.389391 ATACCTGGTGCCGAAGATCG 59.611 55.000 10.23 0.00 40.07 3.69
582 4739 3.257561 CTGGTGCCGAAGATCGCG 61.258 66.667 0.00 0.00 38.82 5.87
583 4740 3.699955 CTGGTGCCGAAGATCGCGA 62.700 63.158 13.09 13.09 38.82 5.87
584 4741 3.255379 GGTGCCGAAGATCGCGAC 61.255 66.667 12.93 5.67 38.82 5.19
585 4742 3.607987 GTGCCGAAGATCGCGACG 61.608 66.667 12.93 10.89 38.82 5.12
586 4743 3.806422 TGCCGAAGATCGCGACGA 61.806 61.111 12.93 4.51 38.82 4.20
587 4744 3.313257 GCCGAAGATCGCGACGAC 61.313 66.667 12.93 6.29 39.18 4.34
589 4746 1.226323 CCGAAGATCGCGACGACTT 60.226 57.895 12.93 17.44 39.18 3.01
590 4747 1.194896 CCGAAGATCGCGACGACTTC 61.195 60.000 27.35 27.35 39.18 3.01
591 4748 0.247735 CGAAGATCGCGACGACTTCT 60.248 55.000 30.51 20.95 39.41 2.85
592 4749 1.790838 CGAAGATCGCGACGACTTCTT 60.791 52.381 30.51 25.92 39.41 2.52
593 4750 2.251893 GAAGATCGCGACGACTTCTTT 58.748 47.619 28.65 14.11 36.02 2.52
594 4751 2.349297 AGATCGCGACGACTTCTTTT 57.651 45.000 12.93 0.00 39.18 2.27
595 4752 2.251893 AGATCGCGACGACTTCTTTTC 58.748 47.619 12.93 0.00 39.18 2.29
597 4754 2.975410 TCGCGACGACTTCTTTTCTA 57.025 45.000 3.71 0.00 0.00 2.10
598 4755 2.847901 TCGCGACGACTTCTTTTCTAG 58.152 47.619 3.71 0.00 0.00 2.43
599 4756 1.317904 CGCGACGACTTCTTTTCTAGC 59.682 52.381 0.00 0.00 0.00 3.42
601 4758 2.342948 GCGACGACTTCTTTTCTAGCTG 59.657 50.000 0.00 0.00 0.00 4.24
603 4760 3.849145 CGACGACTTCTTTTCTAGCTGAG 59.151 47.826 0.00 0.00 0.00 3.35
604 4761 4.170256 GACGACTTCTTTTCTAGCTGAGG 58.830 47.826 0.00 0.00 0.00 3.86
605 4762 3.574826 ACGACTTCTTTTCTAGCTGAGGT 59.425 43.478 0.00 0.00 0.00 3.85
606 4763 4.170256 CGACTTCTTTTCTAGCTGAGGTC 58.830 47.826 0.00 0.00 33.89 3.85
608 4765 3.574826 ACTTCTTTTCTAGCTGAGGTCGT 59.425 43.478 0.00 0.00 0.00 4.34
609 4766 3.577649 TCTTTTCTAGCTGAGGTCGTG 57.422 47.619 0.00 0.00 0.00 4.35
611 4768 3.191581 TCTTTTCTAGCTGAGGTCGTGAG 59.808 47.826 0.00 0.00 0.00 3.51
612 4769 0.811915 TTCTAGCTGAGGTCGTGAGC 59.188 55.000 0.00 0.00 0.00 4.26
641 4992 1.541310 TAGCCGTTGGACCCTGTCTG 61.541 60.000 0.00 0.00 32.47 3.51
665 5016 4.619227 ACACGGTGCCAAGGGTCG 62.619 66.667 8.30 0.00 0.00 4.79
760 5112 2.019951 ACGCGTCGTTGCTTACAGG 61.020 57.895 5.58 0.00 36.35 4.00
824 5176 1.069378 CTCGAACGTTACAGCCCGAC 61.069 60.000 0.00 0.00 0.00 4.79
872 5224 2.030096 GCGTCCCTCCTGCTATAAGTAC 60.030 54.545 0.00 0.00 0.00 2.73
875 5227 4.506271 CGTCCCTCCTGCTATAAGTACCTA 60.506 50.000 0.00 0.00 0.00 3.08
889 5241 0.761702 TACCTACCAATCCCCTCGCC 60.762 60.000 0.00 0.00 0.00 5.54
893 5245 4.856801 CCAATCCCCTCGCCACCG 62.857 72.222 0.00 0.00 0.00 4.94
924 5276 2.433838 CGCAGCTCCCTCACACAG 60.434 66.667 0.00 0.00 0.00 3.66
932 5284 2.175202 CTCCCTCACACAGCTTCTACT 58.825 52.381 0.00 0.00 0.00 2.57
934 5286 1.135257 CCCTCACACAGCTTCTACTCG 60.135 57.143 0.00 0.00 0.00 4.18
935 5287 1.623359 CTCACACAGCTTCTACTCGC 58.377 55.000 0.00 0.00 0.00 5.03
936 5288 0.243907 TCACACAGCTTCTACTCGCC 59.756 55.000 0.00 0.00 0.00 5.54
937 5289 0.038251 CACACAGCTTCTACTCGCCA 60.038 55.000 0.00 0.00 0.00 5.69
940 5292 1.153549 CAGCTTCTACTCGCCACCC 60.154 63.158 0.00 0.00 0.00 4.61
967 5328 2.211806 GCTCTGCAGATCTTAGCCAAG 58.788 52.381 18.63 2.16 0.00 3.61
975 5336 2.827652 GATCTTAGCCAAGGTCTTCCG 58.172 52.381 0.00 0.00 38.64 4.30
1314 5675 3.812019 AGCTCCGCCGTCTACACG 61.812 66.667 0.00 0.00 46.29 4.49
1382 5743 0.099082 GTGTTCTAGACGGAGCGAGG 59.901 60.000 0.00 0.00 0.00 4.63
1393 5754 3.146913 AGCGAGGCTCTGCTCTCC 61.147 66.667 22.20 1.83 36.53 3.71
1410 5771 2.594962 CCGTGCTCTGTTTTCGCGT 61.595 57.895 5.77 0.00 32.52 6.01
1453 5815 2.726821 TCCATGATTCTTTGCTGGACC 58.273 47.619 0.00 0.00 31.19 4.46
1556 5920 7.463648 CGTTTATTCGTTACCTTACCAGACATG 60.464 40.741 0.00 0.00 0.00 3.21
1557 5921 5.670792 ATTCGTTACCTTACCAGACATGA 57.329 39.130 0.00 0.00 0.00 3.07
1558 5922 5.471556 TTCGTTACCTTACCAGACATGAA 57.528 39.130 0.00 0.00 0.00 2.57
1559 5923 4.813027 TCGTTACCTTACCAGACATGAAC 58.187 43.478 0.00 0.00 0.00 3.18
1560 5924 4.525487 TCGTTACCTTACCAGACATGAACT 59.475 41.667 0.00 0.00 0.00 3.01
1561 5925 5.011329 TCGTTACCTTACCAGACATGAACTT 59.989 40.000 0.00 0.00 0.00 2.66
1562 5926 5.120208 CGTTACCTTACCAGACATGAACTTG 59.880 44.000 0.00 0.00 0.00 3.16
1563 5927 4.021102 ACCTTACCAGACATGAACTTGG 57.979 45.455 0.00 3.90 0.00 3.61
1564 5928 3.394606 ACCTTACCAGACATGAACTTGGT 59.605 43.478 15.52 15.52 0.00 3.67
1565 5929 4.003648 CCTTACCAGACATGAACTTGGTC 58.996 47.826 14.93 0.00 0.00 4.02
1566 5930 2.568623 ACCAGACATGAACTTGGTCC 57.431 50.000 0.00 0.00 31.99 4.46
1567 5931 1.774254 ACCAGACATGAACTTGGTCCA 59.226 47.619 0.00 0.00 31.99 4.02
1568 5932 2.224621 ACCAGACATGAACTTGGTCCAG 60.225 50.000 0.00 0.00 31.99 3.86
1569 5933 2.224621 CCAGACATGAACTTGGTCCAGT 60.225 50.000 0.00 0.00 31.99 4.00
1570 5934 3.007940 CCAGACATGAACTTGGTCCAGTA 59.992 47.826 0.00 0.00 31.99 2.74
1571 5935 4.323792 CCAGACATGAACTTGGTCCAGTAT 60.324 45.833 0.00 0.00 31.99 2.12
1572 5936 5.248640 CAGACATGAACTTGGTCCAGTATT 58.751 41.667 0.00 0.00 31.99 1.89
1573 5937 6.406370 CAGACATGAACTTGGTCCAGTATTA 58.594 40.000 0.00 0.00 31.99 0.98
1574 5938 6.878923 CAGACATGAACTTGGTCCAGTATTAA 59.121 38.462 0.00 0.00 31.99 1.40
1575 5939 7.554118 CAGACATGAACTTGGTCCAGTATTAAT 59.446 37.037 0.00 0.00 31.99 1.40
1576 5940 8.109634 AGACATGAACTTGGTCCAGTATTAATT 58.890 33.333 0.00 0.00 31.99 1.40
1577 5941 8.281212 ACATGAACTTGGTCCAGTATTAATTC 57.719 34.615 0.00 0.00 0.00 2.17
1578 5942 8.109634 ACATGAACTTGGTCCAGTATTAATTCT 58.890 33.333 0.00 0.00 0.00 2.40
1579 5943 8.616076 CATGAACTTGGTCCAGTATTAATTCTC 58.384 37.037 0.00 0.00 0.00 2.87
1580 5944 7.110155 TGAACTTGGTCCAGTATTAATTCTCC 58.890 38.462 0.00 0.00 0.00 3.71
1581 5945 6.002653 ACTTGGTCCAGTATTAATTCTCCC 57.997 41.667 0.00 0.00 0.00 4.30
1582 5946 5.104067 ACTTGGTCCAGTATTAATTCTCCCC 60.104 44.000 0.00 0.00 0.00 4.81
1583 5947 4.641868 TGGTCCAGTATTAATTCTCCCCT 58.358 43.478 0.00 0.00 0.00 4.79
1584 5948 4.412199 TGGTCCAGTATTAATTCTCCCCTG 59.588 45.833 0.00 0.00 0.00 4.45
1585 5949 4.390264 GTCCAGTATTAATTCTCCCCTGC 58.610 47.826 0.00 0.00 0.00 4.85
1586 5950 4.103311 GTCCAGTATTAATTCTCCCCTGCT 59.897 45.833 0.00 0.00 0.00 4.24
1587 5951 5.307196 GTCCAGTATTAATTCTCCCCTGCTA 59.693 44.000 0.00 0.00 0.00 3.49
1588 5952 5.544176 TCCAGTATTAATTCTCCCCTGCTAG 59.456 44.000 0.00 0.00 0.00 3.42
1589 5953 5.280215 CCAGTATTAATTCTCCCCTGCTAGG 60.280 48.000 0.00 0.00 34.30 3.02
1590 5954 3.797559 ATTAATTCTCCCCTGCTAGGC 57.202 47.619 0.00 0.00 32.73 3.93
1591 5955 2.496679 TAATTCTCCCCTGCTAGGCT 57.503 50.000 0.00 0.00 32.73 4.58
1592 5956 0.842635 AATTCTCCCCTGCTAGGCTG 59.157 55.000 0.00 0.00 32.73 4.85
1593 5957 1.704007 ATTCTCCCCTGCTAGGCTGC 61.704 60.000 0.00 0.00 32.73 5.25
1594 5958 2.767496 CTCCCCTGCTAGGCTGCT 60.767 66.667 0.00 0.00 32.73 4.24
1595 5959 1.458398 CTCCCCTGCTAGGCTGCTA 60.458 63.158 0.00 0.00 32.73 3.49
1596 5960 1.753368 CTCCCCTGCTAGGCTGCTAC 61.753 65.000 0.00 0.00 32.73 3.58
1597 5961 1.764054 CCCCTGCTAGGCTGCTACT 60.764 63.158 0.00 0.00 32.73 2.57
1598 5962 1.341156 CCCCTGCTAGGCTGCTACTT 61.341 60.000 0.00 0.00 32.73 2.24
1599 5963 0.105778 CCCTGCTAGGCTGCTACTTC 59.894 60.000 0.00 0.00 32.73 3.01
1600 5964 0.249238 CCTGCTAGGCTGCTACTTCG 60.249 60.000 0.00 0.00 0.00 3.79
1601 5965 0.249238 CTGCTAGGCTGCTACTTCGG 60.249 60.000 0.00 0.00 0.00 4.30
1602 5966 0.970937 TGCTAGGCTGCTACTTCGGT 60.971 55.000 0.00 0.00 0.00 4.69
1603 5967 0.249114 GCTAGGCTGCTACTTCGGTC 60.249 60.000 0.00 0.00 0.00 4.79
1604 5968 0.386113 CTAGGCTGCTACTTCGGTCC 59.614 60.000 0.00 0.00 0.00 4.46
1605 5969 0.323999 TAGGCTGCTACTTCGGTCCA 60.324 55.000 0.00 0.00 0.00 4.02
1606 5970 1.192146 AGGCTGCTACTTCGGTCCAA 61.192 55.000 0.00 0.00 0.00 3.53
1607 5971 1.019805 GGCTGCTACTTCGGTCCAAC 61.020 60.000 0.00 0.00 0.00 3.77
1608 5972 0.320421 GCTGCTACTTCGGTCCAACA 60.320 55.000 0.00 0.00 0.00 3.33
1609 5973 1.876416 GCTGCTACTTCGGTCCAACAA 60.876 52.381 0.00 0.00 0.00 2.83
1610 5974 2.489971 CTGCTACTTCGGTCCAACAAA 58.510 47.619 0.00 0.00 0.00 2.83
1611 5975 3.074412 CTGCTACTTCGGTCCAACAAAT 58.926 45.455 0.00 0.00 0.00 2.32
1612 5976 3.482436 TGCTACTTCGGTCCAACAAATT 58.518 40.909 0.00 0.00 0.00 1.82
1613 5977 3.252215 TGCTACTTCGGTCCAACAAATTG 59.748 43.478 0.00 0.00 35.40 2.32
1614 5978 2.793278 ACTTCGGTCCAACAAATTGC 57.207 45.000 0.00 0.00 34.17 3.56
1615 5979 2.306847 ACTTCGGTCCAACAAATTGCT 58.693 42.857 0.00 0.00 34.17 3.91
1616 5980 2.693074 ACTTCGGTCCAACAAATTGCTT 59.307 40.909 0.00 0.00 34.17 3.91
1617 5981 3.243401 ACTTCGGTCCAACAAATTGCTTC 60.243 43.478 0.00 0.00 34.17 3.86
1618 5982 1.611491 TCGGTCCAACAAATTGCTTCC 59.389 47.619 0.00 0.00 34.17 3.46
1619 5983 1.339610 CGGTCCAACAAATTGCTTCCA 59.660 47.619 0.00 0.00 34.17 3.53
1620 5984 2.029110 CGGTCCAACAAATTGCTTCCAT 60.029 45.455 0.00 0.00 34.17 3.41
1621 5985 3.588955 GGTCCAACAAATTGCTTCCATC 58.411 45.455 0.00 0.00 34.17 3.51
1622 5986 3.259123 GGTCCAACAAATTGCTTCCATCT 59.741 43.478 0.00 0.00 34.17 2.90
1623 5987 4.240096 GTCCAACAAATTGCTTCCATCTG 58.760 43.478 0.00 0.00 34.17 2.90
1624 5988 4.022068 GTCCAACAAATTGCTTCCATCTGA 60.022 41.667 0.00 0.00 34.17 3.27
1625 5989 4.773674 TCCAACAAATTGCTTCCATCTGAT 59.226 37.500 0.00 0.00 34.17 2.90
1626 5990 5.105635 TCCAACAAATTGCTTCCATCTGATC 60.106 40.000 0.00 0.00 34.17 2.92
1627 5991 5.336929 CCAACAAATTGCTTCCATCTGATCA 60.337 40.000 0.00 0.00 34.17 2.92
1628 5992 5.578005 ACAAATTGCTTCCATCTGATCAG 57.422 39.130 17.07 17.07 0.00 2.90
1629 5993 5.258841 ACAAATTGCTTCCATCTGATCAGA 58.741 37.500 27.03 27.03 42.37 3.27
1638 6002 2.563261 ATCTGATCAGATGCGCCATT 57.437 45.000 32.58 11.05 45.77 3.16
1639 6003 2.336945 TCTGATCAGATGCGCCATTT 57.663 45.000 21.67 0.00 31.41 2.32
1640 6004 2.646930 TCTGATCAGATGCGCCATTTT 58.353 42.857 21.67 0.00 31.41 1.82
1641 6005 3.807553 TCTGATCAGATGCGCCATTTTA 58.192 40.909 21.67 0.00 31.41 1.52
1642 6006 3.811497 TCTGATCAGATGCGCCATTTTAG 59.189 43.478 21.67 0.00 31.41 1.85
1643 6007 2.880268 TGATCAGATGCGCCATTTTAGG 59.120 45.455 4.18 0.00 0.00 2.69
1644 6008 1.679139 TCAGATGCGCCATTTTAGGG 58.321 50.000 4.18 0.00 0.00 3.53
1645 6009 1.211703 TCAGATGCGCCATTTTAGGGA 59.788 47.619 4.18 0.00 0.00 4.20
1646 6010 1.334869 CAGATGCGCCATTTTAGGGAC 59.665 52.381 4.18 0.00 0.00 4.46
1647 6011 0.307760 GATGCGCCATTTTAGGGACG 59.692 55.000 4.18 0.00 0.00 4.79
1650 6014 1.134340 TGCGCCATTTTAGGGACGTAT 60.134 47.619 4.18 0.00 0.00 3.06
1652 6016 2.032290 GCGCCATTTTAGGGACGTATTC 60.032 50.000 0.00 0.00 0.00 1.75
1655 6019 4.448210 GCCATTTTAGGGACGTATTCTGA 58.552 43.478 0.00 0.00 0.00 3.27
1657 6021 4.814771 CCATTTTAGGGACGTATTCTGACC 59.185 45.833 0.00 0.00 0.00 4.02
1658 6022 5.424757 CATTTTAGGGACGTATTCTGACCA 58.575 41.667 0.00 0.00 0.00 4.02
1659 6023 5.687166 TTTTAGGGACGTATTCTGACCAT 57.313 39.130 0.00 0.00 0.00 3.55
1662 6026 4.569719 AGGGACGTATTCTGACCATTTT 57.430 40.909 0.00 0.00 0.00 1.82
1671 6035 6.953743 CGTATTCTGACCATTTTTCTTACGTG 59.046 38.462 0.00 0.00 0.00 4.49
1672 6036 6.877611 ATTCTGACCATTTTTCTTACGTGT 57.122 33.333 0.00 0.00 0.00 4.49
1673 6037 6.687081 TTCTGACCATTTTTCTTACGTGTT 57.313 33.333 0.00 0.00 0.00 3.32
1675 6039 7.416154 TCTGACCATTTTTCTTACGTGTTAG 57.584 36.000 0.00 0.00 0.00 2.34
1679 6043 5.995897 ACCATTTTTCTTACGTGTTAGCTCT 59.004 36.000 0.00 0.00 0.00 4.09
1680 6044 6.147328 ACCATTTTTCTTACGTGTTAGCTCTC 59.853 38.462 0.00 0.00 0.00 3.20
1681 6045 6.402226 CCATTTTTCTTACGTGTTAGCTCTCC 60.402 42.308 0.00 0.00 0.00 3.71
1682 6046 3.482722 TTCTTACGTGTTAGCTCTCCG 57.517 47.619 0.00 0.00 0.00 4.63
1683 6047 2.430465 TCTTACGTGTTAGCTCTCCGT 58.570 47.619 0.00 0.00 35.68 4.69
1684 6048 2.816087 TCTTACGTGTTAGCTCTCCGTT 59.184 45.455 0.00 0.00 33.32 4.44
1685 6049 2.907910 TACGTGTTAGCTCTCCGTTC 57.092 50.000 0.00 0.00 33.32 3.95
1686 6050 0.243095 ACGTGTTAGCTCTCCGTTCC 59.757 55.000 0.00 0.00 0.00 3.62
1687 6051 0.458025 CGTGTTAGCTCTCCGTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
1688 6052 0.606604 GTGTTAGCTCTCCGTTCCCA 59.393 55.000 0.00 0.00 0.00 4.37
1689 6053 0.895530 TGTTAGCTCTCCGTTCCCAG 59.104 55.000 0.00 0.00 0.00 4.45
1690 6054 0.175989 GTTAGCTCTCCGTTCCCAGG 59.824 60.000 0.00 0.00 0.00 4.45
1691 6055 0.040646 TTAGCTCTCCGTTCCCAGGA 59.959 55.000 0.00 0.00 36.20 3.86
1696 6060 4.436368 TCCGTTCCCAGGAGACTC 57.564 61.111 0.00 0.00 40.21 3.36
1709 6073 6.043411 CCCAGGAGACTCGTTCTAAAATTAG 58.957 44.000 0.00 0.00 40.21 1.73
1712 6076 7.436673 CCAGGAGACTCGTTCTAAAATTAGATG 59.563 40.741 3.85 1.30 40.21 2.90
1713 6077 7.976734 CAGGAGACTCGTTCTAAAATTAGATGT 59.023 37.037 3.85 2.30 40.21 3.06
1757 6121 7.849804 AATACTCTTGTATAGCAAACCAGTG 57.150 36.000 0.00 0.00 38.33 3.66
1760 6124 6.947464 ACTCTTGTATAGCAAACCAGTGTAT 58.053 36.000 0.00 0.00 36.53 2.29
1764 6128 9.899661 TCTTGTATAGCAAACCAGTGTATTAAT 57.100 29.630 0.00 0.00 36.53 1.40
1772 6136 9.855021 AGCAAACCAGTGTATTAATATCAAAAC 57.145 29.630 0.00 0.00 0.00 2.43
1774 6138 9.834628 CAAACCAGTGTATTAATATCAAAACGT 57.165 29.630 0.00 0.00 0.00 3.99
1787 6151 5.632244 ATCAAAACGTACCAAATACACCC 57.368 39.130 0.00 0.00 32.79 4.61
1788 6152 4.716794 TCAAAACGTACCAAATACACCCT 58.283 39.130 0.00 0.00 32.79 4.34
1789 6153 5.862845 TCAAAACGTACCAAATACACCCTA 58.137 37.500 0.00 0.00 32.79 3.53
1790 6154 5.700373 TCAAAACGTACCAAATACACCCTAC 59.300 40.000 0.00 0.00 32.79 3.18
1802 6166 7.421382 CCAAATACACCCTACCTCCAGATTAAT 60.421 40.741 0.00 0.00 0.00 1.40
1819 6183 9.534565 CCAGATTAATACAATTCGAAGAAGAGA 57.465 33.333 3.35 0.00 45.90 3.10
1834 6198 9.562408 TCGAAGAAGAGATAGTACATTAGACAT 57.438 33.333 0.00 0.00 0.00 3.06
1845 6209 6.467677 AGTACATTAGACATTGAGCACAACT 58.532 36.000 0.00 0.00 38.90 3.16
1846 6210 6.936900 AGTACATTAGACATTGAGCACAACTT 59.063 34.615 0.00 0.00 38.90 2.66
1847 6211 6.246420 ACATTAGACATTGAGCACAACTTC 57.754 37.500 0.00 0.00 38.90 3.01
1848 6212 5.182001 ACATTAGACATTGAGCACAACTTCC 59.818 40.000 0.00 0.00 38.90 3.46
1850 6214 1.197721 GACATTGAGCACAACTTCCCG 59.802 52.381 0.00 0.00 38.90 5.14
1851 6215 0.109597 CATTGAGCACAACTTCCCGC 60.110 55.000 0.00 0.00 38.90 6.13
1852 6216 0.537143 ATTGAGCACAACTTCCCGCA 60.537 50.000 0.00 0.00 38.90 5.69
1853 6217 0.749818 TTGAGCACAACTTCCCGCAA 60.750 50.000 0.00 0.00 0.00 4.85
1854 6218 0.749818 TGAGCACAACTTCCCGCAAA 60.750 50.000 0.00 0.00 0.00 3.68
1855 6219 0.383949 GAGCACAACTTCCCGCAAAA 59.616 50.000 0.00 0.00 0.00 2.44
1856 6220 0.820871 AGCACAACTTCCCGCAAAAA 59.179 45.000 0.00 0.00 0.00 1.94
1878 6242 7.903995 AAAAAGAAAAAGACATTGAGCACAA 57.096 28.000 0.00 0.00 40.42 3.33
1879 6243 6.892310 AAAGAAAAAGACATTGAGCACAAC 57.108 33.333 0.00 0.00 38.90 3.32
1880 6244 4.936891 AGAAAAAGACATTGAGCACAACC 58.063 39.130 0.00 0.00 38.90 3.77
1881 6245 4.402155 AGAAAAAGACATTGAGCACAACCA 59.598 37.500 0.00 0.00 38.90 3.67
1882 6246 4.734398 AAAAGACATTGAGCACAACCAA 57.266 36.364 0.00 0.00 38.90 3.67
1883 6247 3.715628 AAGACATTGAGCACAACCAAC 57.284 42.857 0.00 0.00 38.90 3.77
1884 6248 1.956477 AGACATTGAGCACAACCAACC 59.044 47.619 0.00 0.00 38.90 3.77
1885 6249 1.956477 GACATTGAGCACAACCAACCT 59.044 47.619 0.00 0.00 38.90 3.50
1893 6274 4.819630 TGAGCACAACCAACCTACTAAAAG 59.180 41.667 0.00 0.00 0.00 2.27
1906 6287 3.434940 ACTAAAAGGTGACATGACCCC 57.565 47.619 0.00 0.00 36.56 4.95
1908 6289 4.172807 ACTAAAAGGTGACATGACCCCTA 58.827 43.478 0.00 0.00 36.56 3.53
1914 6295 3.591527 AGGTGACATGACCCCTAAAATCA 59.408 43.478 0.00 0.00 36.56 2.57
1963 6382 3.387374 AGCAAAATGTCCACATTGACCAA 59.613 39.130 5.70 0.00 45.06 3.67
1967 6386 5.549742 AAATGTCCACATTGACCAACATT 57.450 34.783 5.70 0.00 45.06 2.71
1971 6390 4.889995 TGTCCACATTGACCAACATTGTTA 59.110 37.500 0.86 0.00 39.89 2.41
1977 6396 5.068987 ACATTGACCAACATTGTTAGCAACT 59.931 36.000 0.86 0.00 39.17 3.16
1978 6397 4.829064 TGACCAACATTGTTAGCAACTC 57.171 40.909 0.86 0.00 37.44 3.01
1990 6409 1.040339 AGCAACTCCGGGCAACAAAA 61.040 50.000 0.00 0.00 39.74 2.44
1991 6410 0.874175 GCAACTCCGGGCAACAAAAC 60.874 55.000 0.00 0.00 39.74 2.43
1992 6411 0.744281 CAACTCCGGGCAACAAAACT 59.256 50.000 0.00 0.00 39.74 2.66
1993 6412 1.136110 CAACTCCGGGCAACAAAACTT 59.864 47.619 0.00 0.00 39.74 2.66
1994 6413 1.029681 ACTCCGGGCAACAAAACTTC 58.970 50.000 0.00 0.00 39.74 3.01
1995 6414 1.028905 CTCCGGGCAACAAAACTTCA 58.971 50.000 0.00 0.00 39.74 3.02
1998 6417 1.566404 CGGGCAACAAAACTTCAACC 58.434 50.000 0.00 0.00 39.74 3.77
2006 6425 2.159296 ACAAAACTTCAACCTCAACCGC 60.159 45.455 0.00 0.00 0.00 5.68
2015 6434 1.234615 ACCTCAACCGCAATCGTTGG 61.235 55.000 0.00 0.00 32.03 3.77
2033 6452 1.186030 GGTAACATACACGAGCGTCG 58.814 55.000 5.97 5.97 46.93 5.12
2059 6481 0.174845 CGGATCCAACCACTCGCTAA 59.825 55.000 13.41 0.00 0.00 3.09
2060 6482 1.404986 CGGATCCAACCACTCGCTAAA 60.405 52.381 13.41 0.00 0.00 1.85
2063 6485 4.448210 GGATCCAACCACTCGCTAAATTA 58.552 43.478 6.95 0.00 0.00 1.40
2068 6490 3.208747 ACCACTCGCTAAATTATGGGG 57.791 47.619 0.00 0.00 0.00 4.96
2076 6498 6.379988 ACTCGCTAAATTATGGGGTTTTCATT 59.620 34.615 0.00 0.00 0.00 2.57
2077 6499 7.093509 ACTCGCTAAATTATGGGGTTTTCATTT 60.094 33.333 0.00 0.00 0.00 2.32
2082 6504 6.367374 AATTATGGGGTTTTCATTTCGGTT 57.633 33.333 0.00 0.00 0.00 4.44
2083 6505 7.483580 AATTATGGGGTTTTCATTTCGGTTA 57.516 32.000 0.00 0.00 0.00 2.85
2084 6506 7.669089 ATTATGGGGTTTTCATTTCGGTTAT 57.331 32.000 0.00 0.00 0.00 1.89
2086 6508 3.511934 TGGGGTTTTCATTTCGGTTATGG 59.488 43.478 0.00 0.00 0.00 2.74
2087 6509 3.512329 GGGGTTTTCATTTCGGTTATGGT 59.488 43.478 0.00 0.00 0.00 3.55
2093 6518 7.309920 GTTTTCATTTCGGTTATGGTGTATGT 58.690 34.615 0.00 0.00 0.00 2.29
2103 6528 6.365247 CGGTTATGGTGTATGTAGTATGAAGC 59.635 42.308 0.00 0.00 0.00 3.86
2108 6533 6.749139 TGGTGTATGTAGTATGAAGCTGATC 58.251 40.000 0.00 0.00 0.00 2.92
2109 6534 6.323739 TGGTGTATGTAGTATGAAGCTGATCA 59.676 38.462 0.00 0.00 0.00 2.92
2110 6535 6.642950 GGTGTATGTAGTATGAAGCTGATCAC 59.357 42.308 0.00 0.00 30.82 3.06
2111 6536 7.429633 GTGTATGTAGTATGAAGCTGATCACT 58.570 38.462 0.00 0.00 30.82 3.41
2112 6537 8.568794 GTGTATGTAGTATGAAGCTGATCACTA 58.431 37.037 0.00 0.00 30.82 2.74
2113 6538 9.131791 TGTATGTAGTATGAAGCTGATCACTAA 57.868 33.333 0.00 0.00 30.82 2.24
2117 6542 8.138074 TGTAGTATGAAGCTGATCACTAATGTC 58.862 37.037 0.00 0.00 30.82 3.06
2118 6543 7.117285 AGTATGAAGCTGATCACTAATGTCA 57.883 36.000 0.00 0.00 30.82 3.58
2122 6547 4.134379 AGCTGATCACTAATGTCAGTGG 57.866 45.455 0.00 0.00 44.98 4.00
2125 6550 4.937620 GCTGATCACTAATGTCAGTGGAAA 59.062 41.667 0.00 0.00 44.98 3.13
2127 6552 6.114187 TGATCACTAATGTCAGTGGAAAGT 57.886 37.500 0.00 0.00 44.98 2.66
2143 6570 4.249661 GGAAAGTCAAAACACCTTTTGCA 58.750 39.130 1.74 0.00 44.14 4.08
2167 6594 8.231837 GCATTGCAAACTTACAATTGATCATTT 58.768 29.630 13.59 4.74 34.32 2.32
2168 6595 9.536558 CATTGCAAACTTACAATTGATCATTTG 57.463 29.630 22.64 22.64 34.32 2.32
2170 6597 8.523523 TGCAAACTTACAATTGATCATTTGAG 57.476 30.769 28.30 20.43 0.00 3.02
2171 6598 8.143193 TGCAAACTTACAATTGATCATTTGAGT 58.857 29.630 28.30 20.93 0.00 3.41
2172 6599 8.430063 GCAAACTTACAATTGATCATTTGAGTG 58.570 33.333 28.30 20.04 0.00 3.51
2173 6600 9.467258 CAAACTTACAATTGATCATTTGAGTGT 57.533 29.630 28.30 17.21 0.00 3.55
2177 6604 9.265938 CTTACAATTGATCATTTGAGTGTAACG 57.734 33.333 28.30 14.40 45.86 3.18
2178 6605 7.433708 ACAATTGATCATTTGAGTGTAACGA 57.566 32.000 28.30 0.00 45.86 3.85
2179 6606 8.044060 ACAATTGATCATTTGAGTGTAACGAT 57.956 30.769 28.30 7.01 45.86 3.73
2180 6607 9.161629 ACAATTGATCATTTGAGTGTAACGATA 57.838 29.630 28.30 0.00 45.86 2.92
2181 6608 9.986833 CAATTGATCATTTGAGTGTAACGATAA 57.013 29.630 20.67 0.00 45.86 1.75
2182 6609 9.988350 AATTGATCATTTGAGTGTAACGATAAC 57.012 29.630 0.00 0.00 45.86 1.89
2183 6610 7.216920 TGATCATTTGAGTGTAACGATAACG 57.783 36.000 0.00 0.00 45.86 3.18
2184 6611 5.444586 TCATTTGAGTGTAACGATAACGC 57.555 39.130 0.00 0.00 45.86 4.84
2185 6612 4.924462 TCATTTGAGTGTAACGATAACGCA 59.076 37.500 0.00 0.00 45.86 5.24
2186 6613 5.405873 TCATTTGAGTGTAACGATAACGCAA 59.594 36.000 0.00 0.00 45.86 4.85
2187 6614 5.654317 TTTGAGTGTAACGATAACGCAAA 57.346 34.783 0.00 1.58 45.86 3.68
2188 6615 5.654317 TTGAGTGTAACGATAACGCAAAA 57.346 34.783 0.00 0.00 45.86 2.44
2189 6616 5.654317 TGAGTGTAACGATAACGCAAAAA 57.346 34.783 0.00 0.00 45.86 1.94
2190 6617 5.672051 TGAGTGTAACGATAACGCAAAAAG 58.328 37.500 0.00 0.00 45.86 2.27
2191 6618 5.462729 TGAGTGTAACGATAACGCAAAAAGA 59.537 36.000 0.00 0.00 45.86 2.52
2192 6619 6.018913 TGAGTGTAACGATAACGCAAAAAGAA 60.019 34.615 0.00 0.00 45.86 2.52
2193 6620 6.717413 AGTGTAACGATAACGCAAAAAGAAA 58.283 32.000 0.00 0.00 45.86 2.52
2194 6621 7.188157 AGTGTAACGATAACGCAAAAAGAAAA 58.812 30.769 0.00 0.00 45.86 2.29
2195 6622 7.375017 AGTGTAACGATAACGCAAAAAGAAAAG 59.625 33.333 0.00 0.00 45.86 2.27
2196 6623 6.633634 TGTAACGATAACGCAAAAAGAAAAGG 59.366 34.615 0.00 0.00 43.96 3.11
2197 6624 5.427036 ACGATAACGCAAAAAGAAAAGGA 57.573 34.783 0.00 0.00 43.96 3.36
2198 6625 5.823353 ACGATAACGCAAAAAGAAAAGGAA 58.177 33.333 0.00 0.00 43.96 3.36
2199 6626 5.912955 ACGATAACGCAAAAAGAAAAGGAAG 59.087 36.000 0.00 0.00 43.96 3.46
2200 6627 6.140110 CGATAACGCAAAAAGAAAAGGAAGA 58.860 36.000 0.00 0.00 0.00 2.87
2201 6628 6.303259 CGATAACGCAAAAAGAAAAGGAAGAG 59.697 38.462 0.00 0.00 0.00 2.85
2204 6631 4.157840 ACGCAAAAAGAAAAGGAAGAGTGT 59.842 37.500 0.00 0.00 0.00 3.55
2207 6634 6.196538 CGCAAAAAGAAAAGGAAGAGTGTAAC 59.803 38.462 0.00 0.00 0.00 2.50
2238 6667 5.066505 GCAAAATGGGAGTACCTAGAATGTG 59.933 44.000 0.00 0.00 41.11 3.21
2250 6679 3.698040 CCTAGAATGTGCTTTGATTGCCT 59.302 43.478 0.00 0.00 0.00 4.75
2253 6682 3.322828 AGAATGTGCTTTGATTGCCTGTT 59.677 39.130 0.00 0.00 0.00 3.16
2255 6684 1.068895 TGTGCTTTGATTGCCTGTTGG 59.931 47.619 0.00 0.00 0.00 3.77
2256 6685 1.069049 GTGCTTTGATTGCCTGTTGGT 59.931 47.619 0.00 0.00 35.27 3.67
2257 6686 1.068895 TGCTTTGATTGCCTGTTGGTG 59.931 47.619 0.00 0.00 35.27 4.17
2260 6689 3.645884 CTTTGATTGCCTGTTGGTGAAG 58.354 45.455 0.00 0.00 35.27 3.02
2261 6690 0.961019 TGATTGCCTGTTGGTGAAGC 59.039 50.000 0.00 0.00 35.27 3.86
2262 6691 0.109597 GATTGCCTGTTGGTGAAGCG 60.110 55.000 0.00 0.00 35.27 4.68
2264 6693 2.594592 GCCTGTTGGTGAAGCGGT 60.595 61.111 0.00 0.00 35.27 5.68
2265 6694 2.908073 GCCTGTTGGTGAAGCGGTG 61.908 63.158 0.00 0.00 35.27 4.94
2269 6700 1.134175 CTGTTGGTGAAGCGGTGTTTT 59.866 47.619 0.00 0.00 0.00 2.43
2270 6701 1.546476 TGTTGGTGAAGCGGTGTTTTT 59.454 42.857 0.00 0.00 0.00 1.94
2284 6715 4.036380 CGGTGTTTTTAGAACTTTGCTCCT 59.964 41.667 0.00 0.00 0.00 3.69
2288 6719 7.415877 GGTGTTTTTAGAACTTTGCTCCTTACA 60.416 37.037 0.00 0.00 0.00 2.41
2295 6726 7.530426 AGAACTTTGCTCCTTACATGAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
2297 6728 6.899393 ACTTTGCTCCTTACATGAAAATGA 57.101 33.333 0.00 0.00 0.00 2.57
2299 6730 4.944962 TGCTCCTTACATGAAAATGACG 57.055 40.909 0.00 0.00 0.00 4.35
2308 6739 7.279090 CCTTACATGAAAATGACGTACCATGTA 59.721 37.037 0.00 11.10 42.80 2.29
2311 6742 7.302524 ACATGAAAATGACGTACCATGTAAAC 58.697 34.615 0.00 0.00 41.63 2.01
2329 6760 7.744087 TGTAAACATGCTCACTGTTTCTTAT 57.256 32.000 4.82 0.00 43.72 1.73
2331 6762 9.278978 TGTAAACATGCTCACTGTTTCTTATTA 57.721 29.630 4.82 0.00 43.72 0.98
2332 6763 9.543018 GTAAACATGCTCACTGTTTCTTATTAC 57.457 33.333 4.82 0.00 43.72 1.89
2333 6764 6.408858 ACATGCTCACTGTTTCTTATTACG 57.591 37.500 0.00 0.00 0.00 3.18
2337 6768 7.576750 TGCTCACTGTTTCTTATTACGTAAG 57.423 36.000 14.25 2.01 40.99 2.34
2339 6770 6.035758 GCTCACTGTTTCTTATTACGTAAGGG 59.964 42.308 14.25 6.42 40.21 3.95
2358 6789 3.763897 AGGGTAGTGTTCATGCCATTTTC 59.236 43.478 0.00 0.00 0.00 2.29
2359 6790 3.427503 GGGTAGTGTTCATGCCATTTTCG 60.428 47.826 0.00 0.00 0.00 3.46
2360 6791 3.438781 GGTAGTGTTCATGCCATTTTCGA 59.561 43.478 0.00 0.00 0.00 3.71
2362 6793 2.489329 AGTGTTCATGCCATTTTCGAGG 59.511 45.455 0.00 0.00 0.00 4.63
2363 6794 1.818060 TGTTCATGCCATTTTCGAGGG 59.182 47.619 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.681639 AGGTACAAAGACAACAGTAAGCTT 58.318 37.500 3.48 3.48 0.00 3.74
1 2 5.291905 AGGTACAAAGACAACAGTAAGCT 57.708 39.130 0.00 0.00 0.00 3.74
2 3 4.451435 GGAGGTACAAAGACAACAGTAAGC 59.549 45.833 0.00 0.00 0.00 3.09
3 4 5.607477 TGGAGGTACAAAGACAACAGTAAG 58.393 41.667 0.00 0.00 0.00 2.34
4 5 5.617528 TGGAGGTACAAAGACAACAGTAA 57.382 39.130 0.00 0.00 0.00 2.24
5 6 5.818678 ATGGAGGTACAAAGACAACAGTA 57.181 39.130 0.00 0.00 0.00 2.74
7 8 5.530915 TGAAATGGAGGTACAAAGACAACAG 59.469 40.000 0.00 0.00 0.00 3.16
8 9 5.441500 TGAAATGGAGGTACAAAGACAACA 58.558 37.500 0.00 0.00 0.00 3.33
9 10 5.562890 GCTGAAATGGAGGTACAAAGACAAC 60.563 44.000 0.00 0.00 0.00 3.32
10 11 4.518970 GCTGAAATGGAGGTACAAAGACAA 59.481 41.667 0.00 0.00 0.00 3.18
11 12 4.072131 GCTGAAATGGAGGTACAAAGACA 58.928 43.478 0.00 0.00 0.00 3.41
12 13 4.072131 TGCTGAAATGGAGGTACAAAGAC 58.928 43.478 0.00 0.00 0.00 3.01
15 16 4.365514 TCTGCTGAAATGGAGGTACAAA 57.634 40.909 0.00 0.00 0.00 2.83
16 17 4.072131 GTTCTGCTGAAATGGAGGTACAA 58.928 43.478 7.68 0.00 33.52 2.41
37 4194 8.409358 AAGCTCTTGGATATAAACAAGTTTGT 57.591 30.769 15.32 4.47 43.40 2.83
80 4237 5.723672 TTCTTGTCTACATCGAGGACTTT 57.276 39.130 3.06 0.00 0.00 2.66
86 4243 3.975670 GGCGTATTCTTGTCTACATCGAG 59.024 47.826 0.00 0.00 0.00 4.04
125 4282 0.109597 CTGGAGCGGTGATTTGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
149 4306 6.493166 TCTATGGGTCCTCATCAATGTTTTT 58.507 36.000 0.00 0.00 0.00 1.94
154 4311 4.060900 CGTTCTATGGGTCCTCATCAATG 58.939 47.826 0.00 0.00 0.00 2.82
155 4312 3.495100 GCGTTCTATGGGTCCTCATCAAT 60.495 47.826 0.00 0.00 0.00 2.57
157 4314 1.412710 GCGTTCTATGGGTCCTCATCA 59.587 52.381 0.00 0.00 0.00 3.07
159 4316 0.759346 GGCGTTCTATGGGTCCTCAT 59.241 55.000 0.00 0.00 0.00 2.90
160 4317 1.335132 GGGCGTTCTATGGGTCCTCA 61.335 60.000 0.00 0.00 0.00 3.86
162 4319 2.070650 GGGGCGTTCTATGGGTCCT 61.071 63.158 0.00 0.00 0.00 3.85
168 4325 2.808543 GCTAGAAATGGGGCGTTCTATG 59.191 50.000 0.00 0.00 36.13 2.23
169 4326 2.224548 GGCTAGAAATGGGGCGTTCTAT 60.225 50.000 0.00 0.00 36.13 1.98
170 4327 1.140252 GGCTAGAAATGGGGCGTTCTA 59.860 52.381 0.00 0.00 35.69 2.10
186 4343 1.271856 TCCTCAATTCCGTGTGGCTA 58.728 50.000 0.00 0.00 33.11 3.93
194 4351 4.697352 AGATTTCTGTGTTCCTCAATTCCG 59.303 41.667 0.00 0.00 0.00 4.30
195 4352 5.707298 TGAGATTTCTGTGTTCCTCAATTCC 59.293 40.000 0.00 0.00 0.00 3.01
197 4354 7.884877 TGTATGAGATTTCTGTGTTCCTCAATT 59.115 33.333 0.00 0.00 34.80 2.32
198 4355 7.397221 TGTATGAGATTTCTGTGTTCCTCAAT 58.603 34.615 0.00 0.00 34.80 2.57
201 4358 7.011857 GGAATGTATGAGATTTCTGTGTTCCTC 59.988 40.741 0.00 0.00 0.00 3.71
202 4359 6.825721 GGAATGTATGAGATTTCTGTGTTCCT 59.174 38.462 0.00 0.00 0.00 3.36
203 4360 6.038714 GGGAATGTATGAGATTTCTGTGTTCC 59.961 42.308 0.00 0.00 0.00 3.62
204 4361 6.038714 GGGGAATGTATGAGATTTCTGTGTTC 59.961 42.308 0.00 0.00 0.00 3.18
206 4363 5.044919 TGGGGAATGTATGAGATTTCTGTGT 60.045 40.000 0.00 0.00 0.00 3.72
207 4364 5.439721 TGGGGAATGTATGAGATTTCTGTG 58.560 41.667 0.00 0.00 0.00 3.66
208 4365 5.715439 TGGGGAATGTATGAGATTTCTGT 57.285 39.130 0.00 0.00 0.00 3.41
209 4366 5.887598 TGTTGGGGAATGTATGAGATTTCTG 59.112 40.000 0.00 0.00 0.00 3.02
210 4367 6.078456 TGTTGGGGAATGTATGAGATTTCT 57.922 37.500 0.00 0.00 0.00 2.52
211 4368 6.378280 ACTTGTTGGGGAATGTATGAGATTTC 59.622 38.462 0.00 0.00 0.00 2.17
212 4369 6.256053 ACTTGTTGGGGAATGTATGAGATTT 58.744 36.000 0.00 0.00 0.00 2.17
213 4370 5.831103 ACTTGTTGGGGAATGTATGAGATT 58.169 37.500 0.00 0.00 0.00 2.40
214 4371 5.440610 GACTTGTTGGGGAATGTATGAGAT 58.559 41.667 0.00 0.00 0.00 2.75
215 4372 4.622933 CGACTTGTTGGGGAATGTATGAGA 60.623 45.833 0.00 0.00 0.00 3.27
216 4373 3.623060 CGACTTGTTGGGGAATGTATGAG 59.377 47.826 0.00 0.00 0.00 2.90
217 4374 3.605634 CGACTTGTTGGGGAATGTATGA 58.394 45.455 0.00 0.00 0.00 2.15
218 4375 2.682856 CCGACTTGTTGGGGAATGTATG 59.317 50.000 0.00 0.00 0.00 2.39
219 4376 2.574369 TCCGACTTGTTGGGGAATGTAT 59.426 45.455 7.16 0.00 0.00 2.29
220 4377 1.979308 TCCGACTTGTTGGGGAATGTA 59.021 47.619 7.16 0.00 0.00 2.29
221 4378 0.768622 TCCGACTTGTTGGGGAATGT 59.231 50.000 7.16 0.00 0.00 2.71
222 4379 1.904287 TTCCGACTTGTTGGGGAATG 58.096 50.000 7.16 0.00 33.80 2.67
223 4380 2.158519 AGTTTCCGACTTGTTGGGGAAT 60.159 45.455 7.16 0.00 38.29 3.01
224 4381 1.213430 AGTTTCCGACTTGTTGGGGAA 59.787 47.619 7.16 3.23 33.92 3.97
249 4406 0.584876 GGTTCCGACCAACGAAAGTG 59.415 55.000 0.00 0.00 44.55 3.16
262 4419 3.291101 TTCTTCGGCTCCGGTTCCG 62.291 63.158 24.27 24.27 46.52 4.30
264 4421 1.740664 GGTTCTTCGGCTCCGGTTC 60.741 63.158 8.59 0.00 40.25 3.62
269 4426 0.804989 CATGTTGGTTCTTCGGCTCC 59.195 55.000 0.00 0.00 0.00 4.70
278 4435 2.886081 TGTTGTTGTGCATGTTGGTTC 58.114 42.857 0.00 0.00 0.00 3.62
285 4442 5.721876 AAAAGACAATGTTGTTGTGCATG 57.278 34.783 0.00 0.00 42.43 4.06
328 4485 4.335315 CGGTTATTGCTGCCTCTAATGAAA 59.665 41.667 0.00 0.00 0.00 2.69
329 4486 3.876914 CGGTTATTGCTGCCTCTAATGAA 59.123 43.478 0.00 0.00 0.00 2.57
330 4487 3.466836 CGGTTATTGCTGCCTCTAATGA 58.533 45.455 0.00 0.00 0.00 2.57
333 4490 1.745827 GCCGGTTATTGCTGCCTCTAA 60.746 52.381 1.90 0.00 0.00 2.10
351 4508 8.618677 GGTGTTGGAAGTTTATTATTACTAGCC 58.381 37.037 0.00 0.00 0.00 3.93
370 4527 0.468958 TGGAATGGTGGTGGTGTTGG 60.469 55.000 0.00 0.00 0.00 3.77
382 4539 4.540359 TCCAATTTCTTTGCTGGAATGG 57.460 40.909 0.00 0.00 35.02 3.16
413 4570 2.649331 TAGTCGTGTGGCTAGCTTTC 57.351 50.000 15.72 6.07 0.00 2.62
416 4573 1.033574 GGATAGTCGTGTGGCTAGCT 58.966 55.000 15.72 0.00 0.00 3.32
423 4580 6.533819 TTTTGTTTGTAGGATAGTCGTGTG 57.466 37.500 0.00 0.00 0.00 3.82
459 4616 0.113776 TAACCCGTGAGACCTGGTCT 59.886 55.000 28.70 28.70 46.42 3.85
460 4617 0.531200 CTAACCCGTGAGACCTGGTC 59.469 60.000 19.20 19.20 0.00 4.02
461 4618 1.542187 GCTAACCCGTGAGACCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
462 4619 1.218316 GCTAACCCGTGAGACCTGG 59.782 63.158 0.00 0.00 0.00 4.45
465 4622 1.218316 CCTGCTAACCCGTGAGACC 59.782 63.158 0.00 0.00 0.00 3.85
466 4623 0.389948 CACCTGCTAACCCGTGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
467 4624 0.541063 TCACCTGCTAACCCGTGAGA 60.541 55.000 0.00 0.00 31.80 3.27
468 4625 0.108615 CTCACCTGCTAACCCGTGAG 60.109 60.000 2.01 2.01 44.38 3.51
469 4626 0.541063 TCTCACCTGCTAACCCGTGA 60.541 55.000 0.00 0.00 34.26 4.35
470 4627 0.389948 GTCTCACCTGCTAACCCGTG 60.390 60.000 0.00 0.00 0.00 4.94
472 4629 1.218316 GGTCTCACCTGCTAACCCG 59.782 63.158 0.00 0.00 34.73 5.28
473 4630 1.602771 GGGTCTCACCTGCTAACCC 59.397 63.158 0.00 0.00 42.62 4.11
474 4631 0.036294 GTGGGTCTCACCTGCTAACC 60.036 60.000 0.00 0.00 40.39 2.85
475 4632 3.534721 GTGGGTCTCACCTGCTAAC 57.465 57.895 0.00 0.00 40.39 2.34
483 4640 0.909610 TCCATCAGGGTGGGTCTCAC 60.910 60.000 0.00 0.00 45.34 3.51
484 4641 0.044702 ATCCATCAGGGTGGGTCTCA 59.955 55.000 0.00 0.00 39.80 3.27
489 4646 0.107017 GTGTCATCCATCAGGGTGGG 60.107 60.000 0.00 0.00 46.59 4.61
492 4649 0.250234 CACGTGTCATCCATCAGGGT 59.750 55.000 7.58 0.00 38.11 4.34
493 4650 0.536724 TCACGTGTCATCCATCAGGG 59.463 55.000 16.51 0.00 34.83 4.45
494 4651 1.066929 TGTCACGTGTCATCCATCAGG 60.067 52.381 16.51 0.00 0.00 3.86
495 4652 2.368655 TGTCACGTGTCATCCATCAG 57.631 50.000 16.51 0.00 0.00 2.90
496 4653 3.261580 GAATGTCACGTGTCATCCATCA 58.738 45.455 24.84 9.40 0.00 3.07
497 4654 3.062639 GTGAATGTCACGTGTCATCCATC 59.937 47.826 24.84 19.34 37.67 3.51
498 4655 3.002791 GTGAATGTCACGTGTCATCCAT 58.997 45.455 24.84 12.42 37.67 3.41
510 4667 6.209192 AGGTGCTTTATGATTTGTGAATGTCA 59.791 34.615 0.00 0.00 0.00 3.58
512 4669 6.594788 AGGTGCTTTATGATTTGTGAATGT 57.405 33.333 0.00 0.00 0.00 2.71
513 4670 9.241317 GATTAGGTGCTTTATGATTTGTGAATG 57.759 33.333 0.00 0.00 0.00 2.67
516 4673 7.415541 GCAGATTAGGTGCTTTATGATTTGTGA 60.416 37.037 0.00 0.00 37.96 3.58
517 4674 6.694411 GCAGATTAGGTGCTTTATGATTTGTG 59.306 38.462 0.00 0.00 37.96 3.33
520 4677 6.131961 AGGCAGATTAGGTGCTTTATGATTT 58.868 36.000 0.00 0.00 40.97 2.17
521 4678 5.699143 AGGCAGATTAGGTGCTTTATGATT 58.301 37.500 0.00 0.00 40.97 2.57
522 4679 5.163163 TGAGGCAGATTAGGTGCTTTATGAT 60.163 40.000 0.00 0.00 40.97 2.45
523 4680 4.164030 TGAGGCAGATTAGGTGCTTTATGA 59.836 41.667 0.00 0.00 40.97 2.15
524 4681 4.454678 TGAGGCAGATTAGGTGCTTTATG 58.545 43.478 0.00 0.00 40.97 1.90
527 4684 3.659183 ATGAGGCAGATTAGGTGCTTT 57.341 42.857 0.00 0.00 40.97 3.51
528 4685 3.659183 AATGAGGCAGATTAGGTGCTT 57.341 42.857 0.00 0.00 40.97 3.91
529 4686 3.659183 AAATGAGGCAGATTAGGTGCT 57.341 42.857 0.00 0.00 40.97 4.40
530 4687 3.067320 GGAAAATGAGGCAGATTAGGTGC 59.933 47.826 0.00 0.00 40.42 5.01
531 4688 3.633986 GGGAAAATGAGGCAGATTAGGTG 59.366 47.826 0.00 0.00 0.00 4.00
532 4689 3.529319 AGGGAAAATGAGGCAGATTAGGT 59.471 43.478 0.00 0.00 0.00 3.08
533 4690 3.887716 CAGGGAAAATGAGGCAGATTAGG 59.112 47.826 0.00 0.00 0.00 2.69
534 4691 4.785301 TCAGGGAAAATGAGGCAGATTAG 58.215 43.478 0.00 0.00 0.00 1.73
536 4693 3.744940 TCAGGGAAAATGAGGCAGATT 57.255 42.857 0.00 0.00 0.00 2.40
537 4694 3.203710 TGATCAGGGAAAATGAGGCAGAT 59.796 43.478 0.00 0.00 0.00 2.90
538 4695 2.577563 TGATCAGGGAAAATGAGGCAGA 59.422 45.455 0.00 0.00 0.00 4.26
539 4696 3.008835 TGATCAGGGAAAATGAGGCAG 57.991 47.619 0.00 0.00 0.00 4.85
540 4697 3.454719 TTGATCAGGGAAAATGAGGCA 57.545 42.857 0.00 0.00 0.00 4.75
541 4698 5.221322 GGTATTTGATCAGGGAAAATGAGGC 60.221 44.000 0.00 0.00 0.00 4.70
542 4699 6.040166 CAGGTATTTGATCAGGGAAAATGAGG 59.960 42.308 0.00 0.00 0.00 3.86
543 4700 6.040166 CCAGGTATTTGATCAGGGAAAATGAG 59.960 42.308 0.00 0.00 0.00 2.90
545 4702 5.658190 ACCAGGTATTTGATCAGGGAAAATG 59.342 40.000 0.00 0.00 0.00 2.32
546 4703 5.658190 CACCAGGTATTTGATCAGGGAAAAT 59.342 40.000 0.00 0.00 0.00 1.82
547 4704 5.016173 CACCAGGTATTTGATCAGGGAAAA 58.984 41.667 0.00 0.00 0.00 2.29
550 4707 2.092429 GCACCAGGTATTTGATCAGGGA 60.092 50.000 0.00 0.00 0.00 4.20
552 4709 2.301346 GGCACCAGGTATTTGATCAGG 58.699 52.381 0.00 0.00 0.00 3.86
553 4710 1.942657 CGGCACCAGGTATTTGATCAG 59.057 52.381 0.00 0.00 0.00 2.90
554 4711 1.557371 TCGGCACCAGGTATTTGATCA 59.443 47.619 0.00 0.00 0.00 2.92
555 4712 2.325583 TCGGCACCAGGTATTTGATC 57.674 50.000 0.00 0.00 0.00 2.92
556 4713 2.238646 TCTTCGGCACCAGGTATTTGAT 59.761 45.455 0.00 0.00 0.00 2.57
558 4715 2.107950 TCTTCGGCACCAGGTATTTG 57.892 50.000 0.00 0.00 0.00 2.32
559 4716 2.741878 CGATCTTCGGCACCAGGTATTT 60.742 50.000 0.00 0.00 36.00 1.40
560 4717 1.202533 CGATCTTCGGCACCAGGTATT 60.203 52.381 0.00 0.00 36.00 1.89
561 4718 0.389391 CGATCTTCGGCACCAGGTAT 59.611 55.000 0.00 0.00 36.00 2.73
562 4719 1.813859 CGATCTTCGGCACCAGGTA 59.186 57.895 0.00 0.00 36.00 3.08
563 4720 2.579201 CGATCTTCGGCACCAGGT 59.421 61.111 0.00 0.00 36.00 4.00
564 4721 2.892425 GCGATCTTCGGCACCAGG 60.892 66.667 0.00 0.00 40.84 4.45
565 4722 3.257561 CGCGATCTTCGGCACCAG 61.258 66.667 0.00 0.00 40.84 4.00
568 4725 3.607987 CGTCGCGATCTTCGGCAC 61.608 66.667 14.06 0.00 40.84 5.01
569 4726 3.806422 TCGTCGCGATCTTCGGCA 61.806 61.111 14.06 0.00 40.84 5.69
570 4727 3.313257 GTCGTCGCGATCTTCGGC 61.313 66.667 14.06 9.23 40.84 5.54
571 4728 1.194896 GAAGTCGTCGCGATCTTCGG 61.195 60.000 24.21 8.96 40.84 4.30
572 4729 0.247735 AGAAGTCGTCGCGATCTTCG 60.248 55.000 28.06 21.47 42.56 3.79
573 4730 1.897641 AAGAAGTCGTCGCGATCTTC 58.102 50.000 27.73 27.73 40.53 2.87
574 4731 2.349297 AAAGAAGTCGTCGCGATCTT 57.651 45.000 14.06 14.32 36.98 2.40
577 4734 2.349297 AGAAAAGAAGTCGTCGCGAT 57.651 45.000 14.06 0.00 38.42 4.58
579 4736 1.317904 GCTAGAAAAGAAGTCGTCGCG 59.682 52.381 0.00 0.00 0.00 5.87
580 4737 2.342948 CAGCTAGAAAAGAAGTCGTCGC 59.657 50.000 0.00 0.00 0.00 5.19
582 4739 4.170256 CCTCAGCTAGAAAAGAAGTCGTC 58.830 47.826 0.00 0.00 0.00 4.20
583 4740 3.574826 ACCTCAGCTAGAAAAGAAGTCGT 59.425 43.478 0.00 0.00 0.00 4.34
584 4741 4.170256 GACCTCAGCTAGAAAAGAAGTCG 58.830 47.826 0.00 0.00 0.00 4.18
585 4742 4.170256 CGACCTCAGCTAGAAAAGAAGTC 58.830 47.826 0.00 0.00 0.00 3.01
586 4743 3.574826 ACGACCTCAGCTAGAAAAGAAGT 59.425 43.478 0.00 0.00 0.00 3.01
587 4744 3.923461 CACGACCTCAGCTAGAAAAGAAG 59.077 47.826 0.00 0.00 0.00 2.85
589 4746 3.154710 TCACGACCTCAGCTAGAAAAGA 58.845 45.455 0.00 0.00 0.00 2.52
590 4747 3.506810 CTCACGACCTCAGCTAGAAAAG 58.493 50.000 0.00 0.00 0.00 2.27
591 4748 2.352814 GCTCACGACCTCAGCTAGAAAA 60.353 50.000 0.00 0.00 0.00 2.29
592 4749 1.202582 GCTCACGACCTCAGCTAGAAA 59.797 52.381 0.00 0.00 0.00 2.52
593 4750 0.811915 GCTCACGACCTCAGCTAGAA 59.188 55.000 0.00 0.00 0.00 2.10
594 4751 0.322546 TGCTCACGACCTCAGCTAGA 60.323 55.000 0.00 0.00 34.03 2.43
595 4752 0.179150 GTGCTCACGACCTCAGCTAG 60.179 60.000 0.00 0.00 34.03 3.42
597 4754 2.653702 GTGCTCACGACCTCAGCT 59.346 61.111 0.00 0.00 34.03 4.24
608 4765 1.211969 GGCTAACTCGACGTGCTCA 59.788 57.895 0.00 0.00 0.00 4.26
609 4766 1.868251 CGGCTAACTCGACGTGCTC 60.868 63.158 0.00 0.00 0.00 4.26
615 4772 0.735287 GGTCCAACGGCTAACTCGAC 60.735 60.000 0.00 0.00 0.00 4.20
616 4773 1.588082 GGTCCAACGGCTAACTCGA 59.412 57.895 0.00 0.00 0.00 4.04
618 4775 0.391263 CAGGGTCCAACGGCTAACTC 60.391 60.000 0.00 0.00 0.00 3.01
619 4776 1.125711 ACAGGGTCCAACGGCTAACT 61.126 55.000 0.00 0.00 0.00 2.24
620 4777 0.672711 GACAGGGTCCAACGGCTAAC 60.673 60.000 0.00 0.00 0.00 2.34
621 4778 0.834687 AGACAGGGTCCAACGGCTAA 60.835 55.000 0.00 0.00 32.18 3.09
624 4781 2.358737 CAGACAGGGTCCAACGGC 60.359 66.667 0.00 0.00 32.18 5.68
872 5224 2.070039 TGGCGAGGGGATTGGTAGG 61.070 63.158 0.00 0.00 0.00 3.18
875 5227 3.728373 GGTGGCGAGGGGATTGGT 61.728 66.667 0.00 0.00 0.00 3.67
889 5241 2.896801 GAGCTTGTGTGTGCCGGTG 61.897 63.158 1.90 0.00 0.00 4.94
893 5245 3.245948 CTGCGAGCTTGTGTGTGCC 62.246 63.158 2.14 0.00 0.00 5.01
904 5256 4.074526 TGTGAGGGAGCTGCGAGC 62.075 66.667 0.00 0.47 42.84 5.03
914 5266 1.135257 CGAGTAGAAGCTGTGTGAGGG 60.135 57.143 0.00 0.00 0.00 4.30
924 5276 2.187163 GGGGTGGCGAGTAGAAGC 59.813 66.667 0.00 0.00 0.00 3.86
935 5287 3.406200 CAGAGCAGGAGGGGGTGG 61.406 72.222 0.00 0.00 0.00 4.61
936 5288 4.106925 GCAGAGCAGGAGGGGGTG 62.107 72.222 0.00 0.00 0.00 4.61
937 5289 4.664267 TGCAGAGCAGGAGGGGGT 62.664 66.667 0.00 0.00 33.32 4.95
955 5316 2.827652 CGGAAGACCTTGGCTAAGATC 58.172 52.381 11.99 3.18 35.92 2.75
956 5317 1.134371 GCGGAAGACCTTGGCTAAGAT 60.134 52.381 11.99 0.00 35.92 2.40
957 5318 0.249398 GCGGAAGACCTTGGCTAAGA 59.751 55.000 11.99 0.00 35.92 2.10
959 5320 1.298667 GGCGGAAGACCTTGGCTAA 59.701 57.895 0.00 0.00 0.00 3.09
967 5328 2.202892 GGTGATCGGCGGAAGACC 60.203 66.667 7.21 4.76 33.32 3.85
1314 5675 1.153997 GACGAAGCTGACGGAGGAC 60.154 63.158 15.89 1.75 34.93 3.85
1393 5754 0.986874 CAACGCGAAAACAGAGCACG 60.987 55.000 15.93 0.00 0.00 5.34
1410 5771 8.602424 TGGAAAGAATCTCTCCAGTATAAACAA 58.398 33.333 0.24 0.00 34.26 2.83
1453 5815 2.350057 TGTATCCCTCTCCTCAGTCG 57.650 55.000 0.00 0.00 0.00 4.18
1556 5920 6.542735 GGGAGAATTAATACTGGACCAAGTTC 59.457 42.308 0.00 0.00 0.00 3.01
1557 5921 6.424032 GGGAGAATTAATACTGGACCAAGTT 58.576 40.000 0.00 0.00 0.00 2.66
1558 5922 5.104067 GGGGAGAATTAATACTGGACCAAGT 60.104 44.000 0.00 0.00 0.00 3.16
1559 5923 5.132816 AGGGGAGAATTAATACTGGACCAAG 59.867 44.000 0.00 0.00 0.00 3.61
1560 5924 5.043762 AGGGGAGAATTAATACTGGACCAA 58.956 41.667 0.00 0.00 0.00 3.67
1561 5925 4.412199 CAGGGGAGAATTAATACTGGACCA 59.588 45.833 0.00 0.00 0.00 4.02
1562 5926 4.747009 GCAGGGGAGAATTAATACTGGACC 60.747 50.000 0.00 0.00 0.00 4.46
1563 5927 4.103311 AGCAGGGGAGAATTAATACTGGAC 59.897 45.833 0.00 0.00 0.00 4.02
1564 5928 4.307259 AGCAGGGGAGAATTAATACTGGA 58.693 43.478 0.00 0.00 0.00 3.86
1565 5929 4.713792 AGCAGGGGAGAATTAATACTGG 57.286 45.455 0.00 0.00 0.00 4.00
1566 5930 5.799213 CCTAGCAGGGGAGAATTAATACTG 58.201 45.833 0.00 0.00 0.00 2.74
1567 5931 4.287326 GCCTAGCAGGGGAGAATTAATACT 59.713 45.833 4.65 0.00 35.37 2.12
1568 5932 4.287326 AGCCTAGCAGGGGAGAATTAATAC 59.713 45.833 4.65 0.00 35.37 1.89
1569 5933 4.287067 CAGCCTAGCAGGGGAGAATTAATA 59.713 45.833 4.65 0.00 35.37 0.98
1570 5934 3.073650 CAGCCTAGCAGGGGAGAATTAAT 59.926 47.826 4.65 0.00 35.37 1.40
1571 5935 2.439507 CAGCCTAGCAGGGGAGAATTAA 59.560 50.000 4.65 0.00 35.37 1.40
1572 5936 2.050144 CAGCCTAGCAGGGGAGAATTA 58.950 52.381 4.65 0.00 35.37 1.40
1573 5937 0.842635 CAGCCTAGCAGGGGAGAATT 59.157 55.000 4.65 0.00 35.37 2.17
1574 5938 1.704007 GCAGCCTAGCAGGGGAGAAT 61.704 60.000 4.65 0.00 35.37 2.40
1575 5939 2.370445 GCAGCCTAGCAGGGGAGAA 61.370 63.158 4.65 0.00 35.37 2.87
1576 5940 1.949575 TAGCAGCCTAGCAGGGGAGA 61.950 60.000 4.65 0.00 35.37 3.71
1577 5941 1.458398 TAGCAGCCTAGCAGGGGAG 60.458 63.158 4.65 0.00 35.37 4.30
1578 5942 1.762460 GTAGCAGCCTAGCAGGGGA 60.762 63.158 4.65 0.00 35.37 4.81
1579 5943 1.341156 AAGTAGCAGCCTAGCAGGGG 61.341 60.000 4.65 0.00 35.37 4.79
1580 5944 0.105778 GAAGTAGCAGCCTAGCAGGG 59.894 60.000 4.65 0.00 35.37 4.45
1581 5945 0.249238 CGAAGTAGCAGCCTAGCAGG 60.249 60.000 0.00 0.00 38.80 4.85
1582 5946 0.249238 CCGAAGTAGCAGCCTAGCAG 60.249 60.000 0.00 0.00 36.85 4.24
1583 5947 0.970937 ACCGAAGTAGCAGCCTAGCA 60.971 55.000 0.00 0.00 36.85 3.49
1584 5948 0.249114 GACCGAAGTAGCAGCCTAGC 60.249 60.000 0.00 0.00 0.00 3.42
1585 5949 0.386113 GGACCGAAGTAGCAGCCTAG 59.614 60.000 0.00 0.00 0.00 3.02
1586 5950 0.323999 TGGACCGAAGTAGCAGCCTA 60.324 55.000 0.00 0.00 0.00 3.93
1587 5951 1.192146 TTGGACCGAAGTAGCAGCCT 61.192 55.000 0.00 0.00 0.00 4.58
1588 5952 1.019805 GTTGGACCGAAGTAGCAGCC 61.020 60.000 0.00 0.00 0.00 4.85
1589 5953 0.320421 TGTTGGACCGAAGTAGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
1590 5954 2.163818 TTGTTGGACCGAAGTAGCAG 57.836 50.000 0.00 0.00 0.00 4.24
1591 5955 2.623878 TTTGTTGGACCGAAGTAGCA 57.376 45.000 0.00 0.00 0.00 3.49
1592 5956 3.821841 CAATTTGTTGGACCGAAGTAGC 58.178 45.455 0.00 0.00 0.00 3.58
1593 5957 3.502211 AGCAATTTGTTGGACCGAAGTAG 59.498 43.478 0.00 0.00 0.00 2.57
1594 5958 3.482436 AGCAATTTGTTGGACCGAAGTA 58.518 40.909 0.00 0.00 0.00 2.24
1595 5959 2.306847 AGCAATTTGTTGGACCGAAGT 58.693 42.857 0.00 0.00 0.00 3.01
1596 5960 3.308530 GAAGCAATTTGTTGGACCGAAG 58.691 45.455 0.00 0.00 0.00 3.79
1597 5961 2.035321 GGAAGCAATTTGTTGGACCGAA 59.965 45.455 0.00 0.00 0.00 4.30
1598 5962 1.611491 GGAAGCAATTTGTTGGACCGA 59.389 47.619 0.00 0.00 0.00 4.69
1599 5963 1.339610 TGGAAGCAATTTGTTGGACCG 59.660 47.619 0.00 0.00 0.00 4.79
1600 5964 3.259123 AGATGGAAGCAATTTGTTGGACC 59.741 43.478 0.00 0.00 0.00 4.46
1601 5965 4.022068 TCAGATGGAAGCAATTTGTTGGAC 60.022 41.667 0.00 0.00 0.00 4.02
1602 5966 4.151121 TCAGATGGAAGCAATTTGTTGGA 58.849 39.130 0.00 0.00 0.00 3.53
1603 5967 4.524316 TCAGATGGAAGCAATTTGTTGG 57.476 40.909 0.00 0.00 0.00 3.77
1604 5968 5.716094 TGATCAGATGGAAGCAATTTGTTG 58.284 37.500 0.00 0.00 0.00 3.33
1605 5969 5.713389 TCTGATCAGATGGAAGCAATTTGTT 59.287 36.000 21.67 0.00 31.41 2.83
1606 5970 5.258841 TCTGATCAGATGGAAGCAATTTGT 58.741 37.500 21.67 0.00 31.41 2.83
1607 5971 5.830000 TCTGATCAGATGGAAGCAATTTG 57.170 39.130 21.67 0.00 31.41 2.32
1620 5984 2.336945 AAATGGCGCATCTGATCAGA 57.663 45.000 27.03 27.03 42.37 3.27
1621 5985 3.058432 CCTAAAATGGCGCATCTGATCAG 60.058 47.826 17.07 17.07 0.00 2.90
1622 5986 2.880268 CCTAAAATGGCGCATCTGATCA 59.120 45.455 10.83 0.00 0.00 2.92
1623 5987 2.227388 CCCTAAAATGGCGCATCTGATC 59.773 50.000 10.83 0.00 0.00 2.92
1624 5988 2.158623 TCCCTAAAATGGCGCATCTGAT 60.159 45.455 10.83 0.00 0.00 2.90
1625 5989 1.211703 TCCCTAAAATGGCGCATCTGA 59.788 47.619 10.83 0.00 0.00 3.27
1626 5990 1.334869 GTCCCTAAAATGGCGCATCTG 59.665 52.381 10.83 0.00 0.00 2.90
1627 5991 1.680338 GTCCCTAAAATGGCGCATCT 58.320 50.000 10.83 0.00 0.00 2.90
1628 5992 0.307760 CGTCCCTAAAATGGCGCATC 59.692 55.000 10.83 0.00 0.00 3.91
1629 5993 0.393808 ACGTCCCTAAAATGGCGCAT 60.394 50.000 10.83 0.00 0.00 4.73
1630 5994 0.249676 TACGTCCCTAAAATGGCGCA 59.750 50.000 10.83 0.00 0.00 6.09
1631 5995 1.589803 ATACGTCCCTAAAATGGCGC 58.410 50.000 0.00 0.00 0.00 6.53
1632 5996 3.247648 CAGAATACGTCCCTAAAATGGCG 59.752 47.826 0.00 0.00 0.00 5.69
1633 5997 4.272748 GTCAGAATACGTCCCTAAAATGGC 59.727 45.833 0.00 0.00 0.00 4.40
1634 5998 4.814771 GGTCAGAATACGTCCCTAAAATGG 59.185 45.833 0.00 0.00 0.00 3.16
1635 5999 5.424757 TGGTCAGAATACGTCCCTAAAATG 58.575 41.667 0.00 0.00 0.00 2.32
1636 6000 5.687166 TGGTCAGAATACGTCCCTAAAAT 57.313 39.130 0.00 0.00 0.00 1.82
1637 6001 5.687166 ATGGTCAGAATACGTCCCTAAAA 57.313 39.130 0.00 0.00 0.00 1.52
1638 6002 5.687166 AATGGTCAGAATACGTCCCTAAA 57.313 39.130 0.00 0.00 0.00 1.85
1639 6003 5.687166 AAATGGTCAGAATACGTCCCTAA 57.313 39.130 0.00 0.00 0.00 2.69
1640 6004 5.687166 AAAATGGTCAGAATACGTCCCTA 57.313 39.130 0.00 0.00 0.00 3.53
1641 6005 4.569719 AAAATGGTCAGAATACGTCCCT 57.430 40.909 0.00 0.00 0.00 4.20
1642 6006 4.941873 AGAAAAATGGTCAGAATACGTCCC 59.058 41.667 0.00 0.00 0.00 4.46
1643 6007 6.496338 AAGAAAAATGGTCAGAATACGTCC 57.504 37.500 0.00 0.00 0.00 4.79
1644 6008 7.148689 ACGTAAGAAAAATGGTCAGAATACGTC 60.149 37.037 0.00 0.00 40.86 4.34
1645 6009 6.647895 ACGTAAGAAAAATGGTCAGAATACGT 59.352 34.615 0.00 0.00 40.24 3.57
1646 6010 6.953743 CACGTAAGAAAAATGGTCAGAATACG 59.046 38.462 0.00 0.00 43.62 3.06
1647 6011 7.803724 ACACGTAAGAAAAATGGTCAGAATAC 58.196 34.615 0.00 0.00 43.62 1.89
1650 6014 6.687081 AACACGTAAGAAAAATGGTCAGAA 57.313 33.333 0.00 0.00 43.62 3.02
1652 6016 6.073222 AGCTAACACGTAAGAAAAATGGTCAG 60.073 38.462 0.00 0.00 43.62 3.51
1655 6019 5.995897 AGAGCTAACACGTAAGAAAAATGGT 59.004 36.000 0.00 0.00 43.62 3.55
1657 6021 6.534934 GGAGAGCTAACACGTAAGAAAAATG 58.465 40.000 0.00 0.00 43.62 2.32
1658 6022 5.347907 CGGAGAGCTAACACGTAAGAAAAAT 59.652 40.000 0.00 0.00 43.62 1.82
1659 6023 4.682860 CGGAGAGCTAACACGTAAGAAAAA 59.317 41.667 0.00 0.00 43.62 1.94
1662 6026 2.816087 ACGGAGAGCTAACACGTAAGAA 59.184 45.455 3.78 0.00 43.62 2.52
1671 6035 0.175989 CCTGGGAACGGAGAGCTAAC 59.824 60.000 0.00 0.00 39.98 2.34
1672 6036 0.040646 TCCTGGGAACGGAGAGCTAA 59.959 55.000 0.00 0.00 39.98 3.09
1673 6037 1.695465 TCCTGGGAACGGAGAGCTA 59.305 57.895 0.00 0.00 39.98 3.32
1679 6043 1.677966 CGAGTCTCCTGGGAACGGA 60.678 63.158 0.00 0.00 39.98 4.69
1680 6044 1.533469 AACGAGTCTCCTGGGAACGG 61.533 60.000 0.00 0.00 0.00 4.44
1681 6045 0.109226 GAACGAGTCTCCTGGGAACG 60.109 60.000 0.00 3.26 0.00 3.95
1682 6046 1.258676 AGAACGAGTCTCCTGGGAAC 58.741 55.000 0.00 0.00 0.00 3.62
1683 6047 2.893215 TAGAACGAGTCTCCTGGGAA 57.107 50.000 0.00 0.00 37.84 3.97
1684 6048 2.893215 TTAGAACGAGTCTCCTGGGA 57.107 50.000 0.00 0.00 37.84 4.37
1685 6049 3.955650 TTTTAGAACGAGTCTCCTGGG 57.044 47.619 0.00 0.00 37.84 4.45
1686 6050 6.864342 TCTAATTTTAGAACGAGTCTCCTGG 58.136 40.000 0.00 0.00 36.88 4.45
1687 6051 7.976734 ACATCTAATTTTAGAACGAGTCTCCTG 59.023 37.037 4.26 0.00 42.55 3.86
1688 6052 8.068892 ACATCTAATTTTAGAACGAGTCTCCT 57.931 34.615 4.26 0.00 42.55 3.69
1689 6053 8.705048 AACATCTAATTTTAGAACGAGTCTCC 57.295 34.615 4.26 0.00 42.55 3.71
1730 6094 9.297037 ACTGGTTTGCTATACAAGAGTATTTTT 57.703 29.630 0.00 0.00 41.15 1.94
1746 6110 9.855021 GTTTTGATATTAATACACTGGTTTGCT 57.145 29.630 0.00 0.00 0.00 3.91
1747 6111 8.794406 CGTTTTGATATTAATACACTGGTTTGC 58.206 33.333 0.00 0.00 0.00 3.68
1752 6116 9.100554 TGGTACGTTTTGATATTAATACACTGG 57.899 33.333 0.00 0.00 0.00 4.00
1764 6128 6.474630 AGGGTGTATTTGGTACGTTTTGATA 58.525 36.000 0.00 0.00 36.01 2.15
1772 6136 3.181472 GGAGGTAGGGTGTATTTGGTACG 60.181 52.174 0.00 0.00 36.01 3.67
1774 6138 4.035112 CTGGAGGTAGGGTGTATTTGGTA 58.965 47.826 0.00 0.00 0.00 3.25
1780 6144 7.310634 TGTATTAATCTGGAGGTAGGGTGTAT 58.689 38.462 0.00 0.00 0.00 2.29
1781 6145 6.685541 TGTATTAATCTGGAGGTAGGGTGTA 58.314 40.000 0.00 0.00 0.00 2.90
1782 6146 5.535029 TGTATTAATCTGGAGGTAGGGTGT 58.465 41.667 0.00 0.00 0.00 4.16
1783 6147 6.494666 TTGTATTAATCTGGAGGTAGGGTG 57.505 41.667 0.00 0.00 0.00 4.61
1784 6148 7.472945 CGAATTGTATTAATCTGGAGGTAGGGT 60.473 40.741 0.00 0.00 0.00 4.34
1785 6149 6.874134 CGAATTGTATTAATCTGGAGGTAGGG 59.126 42.308 0.00 0.00 0.00 3.53
1786 6150 7.667557 TCGAATTGTATTAATCTGGAGGTAGG 58.332 38.462 0.00 0.00 0.00 3.18
1787 6151 9.197694 CTTCGAATTGTATTAATCTGGAGGTAG 57.802 37.037 0.00 0.00 0.00 3.18
1788 6152 8.920174 TCTTCGAATTGTATTAATCTGGAGGTA 58.080 33.333 0.00 0.00 0.00 3.08
1789 6153 7.792032 TCTTCGAATTGTATTAATCTGGAGGT 58.208 34.615 0.00 0.00 0.00 3.85
1790 6154 8.662781 TTCTTCGAATTGTATTAATCTGGAGG 57.337 34.615 0.00 0.00 0.00 4.30
1819 6183 8.260818 AGTTGTGCTCAATGTCTAATGTACTAT 58.739 33.333 4.26 0.00 35.92 2.12
1820 6184 7.611770 AGTTGTGCTCAATGTCTAATGTACTA 58.388 34.615 4.26 0.00 35.92 1.82
1821 6185 6.467677 AGTTGTGCTCAATGTCTAATGTACT 58.532 36.000 4.26 0.00 35.92 2.73
1822 6186 6.727824 AGTTGTGCTCAATGTCTAATGTAC 57.272 37.500 4.26 0.00 35.92 2.90
1834 6198 0.749818 TTGCGGGAAGTTGTGCTCAA 60.750 50.000 0.00 0.00 0.00 3.02
1854 6218 7.148423 GGTTGTGCTCAATGTCTTTTTCTTTTT 60.148 33.333 4.26 0.00 35.92 1.94
1855 6219 6.313658 GGTTGTGCTCAATGTCTTTTTCTTTT 59.686 34.615 4.26 0.00 35.92 2.27
1856 6220 5.812127 GGTTGTGCTCAATGTCTTTTTCTTT 59.188 36.000 4.26 0.00 35.92 2.52
1857 6221 5.105392 TGGTTGTGCTCAATGTCTTTTTCTT 60.105 36.000 4.26 0.00 35.92 2.52
1858 6222 4.402155 TGGTTGTGCTCAATGTCTTTTTCT 59.598 37.500 4.26 0.00 35.92 2.52
1859 6223 4.681744 TGGTTGTGCTCAATGTCTTTTTC 58.318 39.130 4.26 0.00 35.92 2.29
1860 6224 4.734398 TGGTTGTGCTCAATGTCTTTTT 57.266 36.364 4.26 0.00 35.92 1.94
1861 6225 4.432712 GTTGGTTGTGCTCAATGTCTTTT 58.567 39.130 4.26 0.00 35.92 2.27
1865 6229 1.956477 AGGTTGGTTGTGCTCAATGTC 59.044 47.619 4.26 0.00 35.92 3.06
1867 6231 3.149196 AGTAGGTTGGTTGTGCTCAATG 58.851 45.455 4.26 0.00 35.92 2.82
1868 6232 3.508845 AGTAGGTTGGTTGTGCTCAAT 57.491 42.857 4.26 0.00 35.92 2.57
1869 6233 4.425180 TTAGTAGGTTGGTTGTGCTCAA 57.575 40.909 0.00 0.00 0.00 3.02
1871 6235 4.215613 CCTTTTAGTAGGTTGGTTGTGCTC 59.784 45.833 0.00 0.00 0.00 4.26
1874 6238 5.008316 GTCACCTTTTAGTAGGTTGGTTGTG 59.992 44.000 0.00 0.00 46.39 3.33
1875 6239 5.128205 GTCACCTTTTAGTAGGTTGGTTGT 58.872 41.667 0.00 0.00 46.39 3.32
1877 6241 5.376756 TGTCACCTTTTAGTAGGTTGGTT 57.623 39.130 0.00 0.00 46.39 3.67
1878 6242 5.072600 TCATGTCACCTTTTAGTAGGTTGGT 59.927 40.000 0.00 0.00 46.39 3.67
1879 6243 5.411669 GTCATGTCACCTTTTAGTAGGTTGG 59.588 44.000 0.00 0.00 46.39 3.77
1880 6244 5.411669 GGTCATGTCACCTTTTAGTAGGTTG 59.588 44.000 0.00 0.00 46.39 3.77
1881 6245 5.514310 GGGTCATGTCACCTTTTAGTAGGTT 60.514 44.000 3.76 0.00 46.39 3.50
1883 6247 4.514401 GGGTCATGTCACCTTTTAGTAGG 58.486 47.826 3.76 0.00 41.31 3.18
1884 6248 4.225267 AGGGGTCATGTCACCTTTTAGTAG 59.775 45.833 8.06 0.00 38.14 2.57
1885 6249 4.172807 AGGGGTCATGTCACCTTTTAGTA 58.827 43.478 8.06 0.00 38.14 1.82
1893 6274 3.963129 TGATTTTAGGGGTCATGTCACC 58.037 45.455 2.61 2.61 35.42 4.02
1896 6277 8.463930 TTTGATATGATTTTAGGGGTCATGTC 57.536 34.615 0.00 0.00 39.48 3.06
1939 6320 4.771577 TGGTCAATGTGGACATTTTGCTAT 59.228 37.500 2.14 0.00 43.48 2.97
1949 6330 4.320608 AACAATGTTGGTCAATGTGGAC 57.679 40.909 0.00 0.00 38.99 4.02
1963 6382 1.821216 CCCGGAGTTGCTAACAATGT 58.179 50.000 0.73 0.00 38.27 2.71
1967 6386 0.887387 GTTGCCCGGAGTTGCTAACA 60.887 55.000 0.73 0.00 0.00 2.41
1971 6390 1.040339 TTTTGTTGCCCGGAGTTGCT 61.040 50.000 0.73 0.00 0.00 3.91
1977 6396 1.135333 GTTGAAGTTTTGTTGCCCGGA 59.865 47.619 0.73 0.00 0.00 5.14
1978 6397 1.566404 GTTGAAGTTTTGTTGCCCGG 58.434 50.000 0.00 0.00 0.00 5.73
1990 6409 1.880027 GATTGCGGTTGAGGTTGAAGT 59.120 47.619 0.00 0.00 0.00 3.01
1991 6410 1.135972 CGATTGCGGTTGAGGTTGAAG 60.136 52.381 0.00 0.00 0.00 3.02
1992 6411 0.871722 CGATTGCGGTTGAGGTTGAA 59.128 50.000 0.00 0.00 0.00 2.69
1993 6412 0.250124 ACGATTGCGGTTGAGGTTGA 60.250 50.000 0.00 0.00 43.17 3.18
1994 6413 0.591170 AACGATTGCGGTTGAGGTTG 59.409 50.000 0.00 0.00 43.17 3.77
1995 6414 0.591170 CAACGATTGCGGTTGAGGTT 59.409 50.000 0.00 0.00 43.17 3.50
1998 6417 1.434555 TACCAACGATTGCGGTTGAG 58.565 50.000 6.26 0.23 43.17 3.02
2006 6425 4.491924 GCTCGTGTATGTTACCAACGATTG 60.492 45.833 0.00 0.00 41.85 2.67
2026 6445 0.930742 GATCCGATGACACGACGCTC 60.931 60.000 0.00 0.00 35.09 5.03
2029 6448 0.179148 TTGGATCCGATGACACGACG 60.179 55.000 7.39 0.00 35.09 5.12
2033 6452 1.066143 AGTGGTTGGATCCGATGACAC 60.066 52.381 19.25 19.25 0.00 3.67
2038 6458 1.144057 GCGAGTGGTTGGATCCGAT 59.856 57.895 4.57 0.00 0.00 4.18
2039 6459 0.681887 TAGCGAGTGGTTGGATCCGA 60.682 55.000 7.39 1.27 0.00 4.55
2041 6461 2.396590 TTTAGCGAGTGGTTGGATCC 57.603 50.000 4.20 4.20 0.00 3.36
2059 6481 6.367374 AACCGAAATGAAAACCCCATAATT 57.633 33.333 0.00 0.00 0.00 1.40
2060 6482 7.418483 CCATAACCGAAATGAAAACCCCATAAT 60.418 37.037 0.00 0.00 0.00 1.28
2063 6485 4.161377 CCATAACCGAAATGAAAACCCCAT 59.839 41.667 0.00 0.00 0.00 4.00
2068 6490 7.309920 ACATACACCATAACCGAAATGAAAAC 58.690 34.615 0.00 0.00 0.00 2.43
2076 6498 7.585579 TCATACTACATACACCATAACCGAA 57.414 36.000 0.00 0.00 0.00 4.30
2077 6499 7.585579 TTCATACTACATACACCATAACCGA 57.414 36.000 0.00 0.00 0.00 4.69
2082 6504 7.833285 TCAGCTTCATACTACATACACCATA 57.167 36.000 0.00 0.00 0.00 2.74
2083 6505 6.731292 TCAGCTTCATACTACATACACCAT 57.269 37.500 0.00 0.00 0.00 3.55
2084 6506 6.323739 TGATCAGCTTCATACTACATACACCA 59.676 38.462 0.00 0.00 0.00 4.17
2086 6508 7.429633 AGTGATCAGCTTCATACTACATACAC 58.570 38.462 0.00 0.00 0.00 2.90
2087 6509 7.588497 AGTGATCAGCTTCATACTACATACA 57.412 36.000 0.00 0.00 0.00 2.29
2093 6518 8.237811 TGACATTAGTGATCAGCTTCATACTA 57.762 34.615 0.00 0.00 0.00 1.82
2108 6533 6.618287 TTTGACTTTCCACTGACATTAGTG 57.382 37.500 0.00 0.00 45.93 2.74
2109 6534 6.601613 TGTTTTGACTTTCCACTGACATTAGT 59.398 34.615 0.00 0.00 0.00 2.24
2110 6535 6.912591 GTGTTTTGACTTTCCACTGACATTAG 59.087 38.462 0.00 0.00 0.00 1.73
2111 6536 6.183360 GGTGTTTTGACTTTCCACTGACATTA 60.183 38.462 0.00 0.00 0.00 1.90
2112 6537 5.394115 GGTGTTTTGACTTTCCACTGACATT 60.394 40.000 0.00 0.00 0.00 2.71
2113 6538 4.097892 GGTGTTTTGACTTTCCACTGACAT 59.902 41.667 0.00 0.00 0.00 3.06
2114 6539 3.442273 GGTGTTTTGACTTTCCACTGACA 59.558 43.478 0.00 0.00 0.00 3.58
2117 6542 4.718940 AAGGTGTTTTGACTTTCCACTG 57.281 40.909 0.00 0.00 0.00 3.66
2118 6543 5.738619 AAAAGGTGTTTTGACTTTCCACT 57.261 34.783 0.00 0.00 34.44 4.00
2143 6570 9.491675 TCAAATGATCAATTGTAAGTTTGCAAT 57.508 25.926 20.25 2.86 43.75 3.56
2155 6582 9.986833 TTATCGTTACACTCAAATGATCAATTG 57.013 29.630 16.04 16.04 34.98 2.32
2156 6583 9.988350 GTTATCGTTACACTCAAATGATCAATT 57.012 29.630 0.00 0.00 34.98 2.32
2157 6584 8.328146 CGTTATCGTTACACTCAAATGATCAAT 58.672 33.333 0.00 0.00 34.98 2.57
2161 6588 5.579119 TGCGTTATCGTTACACTCAAATGAT 59.421 36.000 0.00 0.00 39.49 2.45
2167 6594 5.462729 TCTTTTTGCGTTATCGTTACACTCA 59.537 36.000 0.00 0.00 39.49 3.41
2168 6595 5.908106 TCTTTTTGCGTTATCGTTACACTC 58.092 37.500 0.00 0.00 39.49 3.51
2170 6597 6.956393 TTTCTTTTTGCGTTATCGTTACAC 57.044 33.333 0.00 0.00 39.49 2.90
2171 6598 6.633634 CCTTTTCTTTTTGCGTTATCGTTACA 59.366 34.615 0.00 0.00 39.49 2.41
2172 6599 6.852345 TCCTTTTCTTTTTGCGTTATCGTTAC 59.148 34.615 0.00 0.00 39.49 2.50
2173 6600 6.957150 TCCTTTTCTTTTTGCGTTATCGTTA 58.043 32.000 0.00 0.00 39.49 3.18
2174 6601 5.823353 TCCTTTTCTTTTTGCGTTATCGTT 58.177 33.333 0.00 0.00 39.49 3.85
2175 6602 5.427036 TCCTTTTCTTTTTGCGTTATCGT 57.573 34.783 0.00 0.00 39.49 3.73
2176 6603 6.140110 TCTTCCTTTTCTTTTTGCGTTATCG 58.860 36.000 0.00 0.00 40.37 2.92
2177 6604 7.113544 CACTCTTCCTTTTCTTTTTGCGTTATC 59.886 37.037 0.00 0.00 0.00 1.75
2178 6605 6.918022 CACTCTTCCTTTTCTTTTTGCGTTAT 59.082 34.615 0.00 0.00 0.00 1.89
2179 6606 6.127842 ACACTCTTCCTTTTCTTTTTGCGTTA 60.128 34.615 0.00 0.00 0.00 3.18
2180 6607 5.102313 CACTCTTCCTTTTCTTTTTGCGTT 58.898 37.500 0.00 0.00 0.00 4.84
2181 6608 4.157840 ACACTCTTCCTTTTCTTTTTGCGT 59.842 37.500 0.00 0.00 0.00 5.24
2182 6609 4.672409 ACACTCTTCCTTTTCTTTTTGCG 58.328 39.130 0.00 0.00 0.00 4.85
2183 6610 7.258441 AGTTACACTCTTCCTTTTCTTTTTGC 58.742 34.615 0.00 0.00 0.00 3.68
2188 6615 9.420551 CGTTATAGTTACACTCTTCCTTTTCTT 57.579 33.333 0.00 0.00 0.00 2.52
2189 6616 7.544915 GCGTTATAGTTACACTCTTCCTTTTCT 59.455 37.037 0.00 0.00 0.00 2.52
2190 6617 7.330208 TGCGTTATAGTTACACTCTTCCTTTTC 59.670 37.037 0.00 0.00 0.00 2.29
2191 6618 7.156673 TGCGTTATAGTTACACTCTTCCTTTT 58.843 34.615 0.00 0.00 0.00 2.27
2192 6619 6.694447 TGCGTTATAGTTACACTCTTCCTTT 58.306 36.000 0.00 0.00 0.00 3.11
2193 6620 6.276832 TGCGTTATAGTTACACTCTTCCTT 57.723 37.500 0.00 0.00 0.00 3.36
2194 6621 5.909621 TGCGTTATAGTTACACTCTTCCT 57.090 39.130 0.00 0.00 0.00 3.36
2195 6622 6.956299 TTTGCGTTATAGTTACACTCTTCC 57.044 37.500 0.00 0.00 0.00 3.46
2196 6623 7.903431 CCATTTTGCGTTATAGTTACACTCTTC 59.097 37.037 0.00 0.00 0.00 2.87
2197 6624 7.148306 CCCATTTTGCGTTATAGTTACACTCTT 60.148 37.037 0.00 0.00 0.00 2.85
2198 6625 6.315393 CCCATTTTGCGTTATAGTTACACTCT 59.685 38.462 0.00 0.00 0.00 3.24
2199 6626 6.314400 TCCCATTTTGCGTTATAGTTACACTC 59.686 38.462 0.00 0.00 0.00 3.51
2200 6627 6.174760 TCCCATTTTGCGTTATAGTTACACT 58.825 36.000 0.00 0.00 0.00 3.55
2201 6628 6.093082 ACTCCCATTTTGCGTTATAGTTACAC 59.907 38.462 0.00 0.00 0.00 2.90
2204 6631 6.762661 GGTACTCCCATTTTGCGTTATAGTTA 59.237 38.462 0.00 0.00 0.00 2.24
2207 6634 5.365619 AGGTACTCCCATTTTGCGTTATAG 58.634 41.667 0.00 0.00 34.66 1.31
2208 6635 5.362105 AGGTACTCCCATTTTGCGTTATA 57.638 39.130 0.00 0.00 34.66 0.98
2215 6642 5.066505 GCACATTCTAGGTACTCCCATTTTG 59.933 44.000 0.00 0.00 41.75 2.44
2238 6667 1.340889 TCACCAACAGGCAATCAAAGC 59.659 47.619 0.00 0.00 0.00 3.51
2250 6679 1.178276 AAAACACCGCTTCACCAACA 58.822 45.000 0.00 0.00 0.00 3.33
2253 6682 2.920524 TCTAAAAACACCGCTTCACCA 58.079 42.857 0.00 0.00 0.00 4.17
2255 6684 4.547406 AGTTCTAAAAACACCGCTTCAC 57.453 40.909 0.00 0.00 0.00 3.18
2256 6685 5.336744 CAAAGTTCTAAAAACACCGCTTCA 58.663 37.500 0.00 0.00 0.00 3.02
2257 6686 4.206404 GCAAAGTTCTAAAAACACCGCTTC 59.794 41.667 0.00 0.00 0.00 3.86
2260 6689 3.702330 AGCAAAGTTCTAAAAACACCGC 58.298 40.909 0.00 0.00 0.00 5.68
2261 6690 4.036380 AGGAGCAAAGTTCTAAAAACACCG 59.964 41.667 0.00 0.00 0.00 4.94
2262 6691 5.515797 AGGAGCAAAGTTCTAAAAACACC 57.484 39.130 0.00 0.00 0.00 4.16
2264 6693 7.633193 TGTAAGGAGCAAAGTTCTAAAAACA 57.367 32.000 0.00 0.00 0.00 2.83
2265 6694 8.349983 TCATGTAAGGAGCAAAGTTCTAAAAAC 58.650 33.333 0.00 0.00 0.00 2.43
2269 6700 8.458573 TTTTCATGTAAGGAGCAAAGTTCTAA 57.541 30.769 0.00 0.00 0.00 2.10
2270 6701 8.514594 CATTTTCATGTAAGGAGCAAAGTTCTA 58.485 33.333 0.00 0.00 0.00 2.10
2284 6715 8.549338 TTACATGGTACGTCATTTTCATGTAA 57.451 30.769 20.83 20.83 46.55 2.41
2288 6719 7.441890 TGTTTACATGGTACGTCATTTTCAT 57.558 32.000 0.00 0.00 0.00 2.57
2311 6742 6.408858 ACGTAATAAGAAACAGTGAGCATG 57.591 37.500 0.00 0.00 0.00 4.06
2318 6749 8.031277 CACTACCCTTACGTAATAAGAAACAGT 58.969 37.037 8.76 2.33 42.75 3.55
2320 6751 7.895759 ACACTACCCTTACGTAATAAGAAACA 58.104 34.615 8.76 0.00 42.75 2.83
2323 6754 8.121305 TGAACACTACCCTTACGTAATAAGAA 57.879 34.615 8.76 0.00 42.75 2.52
2329 6760 4.497300 GCATGAACACTACCCTTACGTAA 58.503 43.478 7.94 7.94 0.00 3.18
2331 6762 2.354403 GGCATGAACACTACCCTTACGT 60.354 50.000 0.00 0.00 0.00 3.57
2332 6763 2.277084 GGCATGAACACTACCCTTACG 58.723 52.381 0.00 0.00 0.00 3.18
2333 6764 3.343941 TGGCATGAACACTACCCTTAC 57.656 47.619 0.00 0.00 0.00 2.34
2337 6768 3.427503 CGAAAATGGCATGAACACTACCC 60.428 47.826 0.00 0.00 0.00 3.69
2339 6770 4.437390 CCTCGAAAATGGCATGAACACTAC 60.437 45.833 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.