Multiple sequence alignment - TraesCS4A01G403500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G403500 chr4A 100.000 2990 0 0 1 2990 676933347 676930358 0.000000e+00 5522.0
1 TraesCS4A01G403500 chr4A 91.187 1441 121 5 608 2043 676880183 676878744 0.000000e+00 1953.0
2 TraesCS4A01G403500 chr4A 81.315 1354 226 11 654 1994 676908765 676907426 0.000000e+00 1074.0
3 TraesCS4A01G403500 chr7D 93.765 1684 83 11 375 2042 59111989 59110312 0.000000e+00 2508.0
4 TraesCS4A01G403500 chr7D 91.068 1433 119 6 608 2032 59105562 59106993 0.000000e+00 1929.0
5 TraesCS4A01G403500 chr7D 84.149 1369 207 8 631 1996 58896535 58895174 0.000000e+00 1317.0
6 TraesCS4A01G403500 chr7D 92.388 578 40 2 1457 2033 58928859 58928285 0.000000e+00 821.0
7 TraesCS4A01G403500 chr7D 81.653 496 58 17 2369 2851 59109208 59108733 6.050000e-102 381.0
8 TraesCS4A01G403500 chr7A 90.603 1426 129 4 623 2043 63723865 63725290 0.000000e+00 1886.0
9 TraesCS4A01G403500 chr7A 84.015 1370 207 11 631 1996 63502988 63501627 0.000000e+00 1306.0
10 TraesCS4A01G403500 chr7A 94.872 702 36 0 873 1574 63733394 63732693 0.000000e+00 1098.0
11 TraesCS4A01G403500 chr7A 94.009 434 24 2 1597 2028 63732704 63732271 0.000000e+00 656.0
12 TraesCS4A01G403500 chr7A 88.698 407 39 4 473 877 63739297 63738896 9.630000e-135 490.0
13 TraesCS4A01G403500 chr7A 93.382 136 9 0 2855 2990 57198045 57197910 5.050000e-48 202.0
14 TraesCS4A01G403500 chr3D 94.286 140 7 1 2852 2990 181088673 181088812 2.330000e-51 213.0
15 TraesCS4A01G403500 chr3D 92.701 137 9 1 2854 2990 118253625 118253490 2.350000e-46 196.0
16 TraesCS4A01G403500 chr3D 76.818 220 33 10 2158 2366 474660055 474660267 1.130000e-19 108.0
17 TraesCS4A01G403500 chr3A 94.161 137 7 1 2855 2990 566885428 566885292 1.090000e-49 207.0
18 TraesCS4A01G403500 chr3A 82.927 123 18 3 2678 2799 121635258 121635138 1.130000e-19 108.0
19 TraesCS4A01G403500 chr3A 79.200 125 22 3 2678 2799 7123143 7123266 1.910000e-12 84.2
20 TraesCS4A01G403500 chr5D 93.382 136 9 0 2855 2990 21466166 21466301 5.050000e-48 202.0
21 TraesCS4A01G403500 chr5D 93.382 136 9 0 2855 2990 464810376 464810241 5.050000e-48 202.0
22 TraesCS4A01G403500 chr4B 93.382 136 9 0 2855 2990 143893760 143893625 5.050000e-48 202.0
23 TraesCS4A01G403500 chr4B 93.382 136 9 0 2855 2990 611435199 611435064 5.050000e-48 202.0
24 TraesCS4A01G403500 chr5A 92.754 138 9 1 2854 2990 356436348 356436485 6.540000e-47 198.0
25 TraesCS4A01G403500 chr5A 100.000 29 0 0 2622 2650 600290045 600290073 1.000000e-03 54.7
26 TraesCS4A01G403500 chr1A 81.000 200 28 7 2187 2383 516163325 516163133 1.860000e-32 150.0
27 TraesCS4A01G403500 chr1A 80.159 126 25 0 2671 2796 494122118 494121993 8.820000e-16 95.3
28 TraesCS4A01G403500 chr7B 78.199 211 35 8 2165 2374 388828075 388828275 1.130000e-24 124.0
29 TraesCS4A01G403500 chr2B 85.849 106 13 1 2269 2374 727244271 727244168 8.760000e-21 111.0
30 TraesCS4A01G403500 chr6D 78.992 119 23 2 2678 2796 383492535 383492651 2.470000e-11 80.5
31 TraesCS4A01G403500 chr2A 100.000 33 0 0 2684 2716 3002730 3002762 8.950000e-06 62.1
32 TraesCS4A01G403500 chr6A 96.970 33 0 1 2621 2652 75155202 75155234 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G403500 chr4A 676930358 676933347 2989 True 5522.0 5522 100.0000 1 2990 1 chr4A.!!$R3 2989
1 TraesCS4A01G403500 chr4A 676878744 676880183 1439 True 1953.0 1953 91.1870 608 2043 1 chr4A.!!$R1 1435
2 TraesCS4A01G403500 chr4A 676907426 676908765 1339 True 1074.0 1074 81.3150 654 1994 1 chr4A.!!$R2 1340
3 TraesCS4A01G403500 chr7D 59105562 59106993 1431 False 1929.0 1929 91.0680 608 2032 1 chr7D.!!$F1 1424
4 TraesCS4A01G403500 chr7D 59108733 59111989 3256 True 1444.5 2508 87.7090 375 2851 2 chr7D.!!$R3 2476
5 TraesCS4A01G403500 chr7D 58895174 58896535 1361 True 1317.0 1317 84.1490 631 1996 1 chr7D.!!$R1 1365
6 TraesCS4A01G403500 chr7D 58928285 58928859 574 True 821.0 821 92.3880 1457 2033 1 chr7D.!!$R2 576
7 TraesCS4A01G403500 chr7A 63723865 63725290 1425 False 1886.0 1886 90.6030 623 2043 1 chr7A.!!$F1 1420
8 TraesCS4A01G403500 chr7A 63501627 63502988 1361 True 1306.0 1306 84.0150 631 1996 1 chr7A.!!$R2 1365
9 TraesCS4A01G403500 chr7A 63732271 63733394 1123 True 877.0 1098 94.4405 873 2028 2 chr7A.!!$R4 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.037232 ACGGCTGGAGTTGCTCTAAC 60.037 55.0 0.0 0.0 39.65 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2221 0.032952 TCCACGTCCAGAAAGAACCG 59.967 55.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.274393 CTTCGGCCTCTAATCACGG 57.726 57.895 0.00 0.00 0.00 4.94
19 20 0.249489 CTTCGGCCTCTAATCACGGG 60.249 60.000 0.00 0.00 0.00 5.28
20 21 2.280186 CGGCCTCTAATCACGGGC 60.280 66.667 0.00 0.00 43.42 6.13
21 22 2.797278 CGGCCTCTAATCACGGGCT 61.797 63.158 0.00 0.00 43.62 5.19
22 23 1.527370 GGCCTCTAATCACGGGCTT 59.473 57.895 0.00 0.00 43.62 4.35
23 24 0.107165 GGCCTCTAATCACGGGCTTT 60.107 55.000 0.00 0.00 43.62 3.51
24 25 1.682087 GGCCTCTAATCACGGGCTTTT 60.682 52.381 0.00 0.00 43.62 2.27
25 26 2.092323 GCCTCTAATCACGGGCTTTTT 58.908 47.619 0.00 0.00 41.20 1.94
69 70 8.500773 TCCTATGTAAAAACAGCTTTAAAGTCG 58.499 33.333 16.38 10.15 0.00 4.18
70 71 6.986424 ATGTAAAAACAGCTTTAAAGTCGC 57.014 33.333 16.38 3.53 0.00 5.19
71 72 5.275494 TGTAAAAACAGCTTTAAAGTCGCC 58.725 37.500 16.38 0.06 0.00 5.54
72 73 2.681152 AAACAGCTTTAAAGTCGCCG 57.319 45.000 16.38 0.00 0.00 6.46
73 74 1.873698 AACAGCTTTAAAGTCGCCGA 58.126 45.000 16.38 0.00 0.00 5.54
74 75 1.873698 ACAGCTTTAAAGTCGCCGAA 58.126 45.000 16.38 0.00 0.00 4.30
75 76 1.798813 ACAGCTTTAAAGTCGCCGAAG 59.201 47.619 16.38 1.62 0.00 3.79
76 77 1.798813 CAGCTTTAAAGTCGCCGAAGT 59.201 47.619 16.38 0.00 0.00 3.01
77 78 2.223377 CAGCTTTAAAGTCGCCGAAGTT 59.777 45.455 16.38 0.00 0.00 2.66
78 79 2.876550 AGCTTTAAAGTCGCCGAAGTTT 59.123 40.909 16.38 0.00 0.00 2.66
79 80 3.314357 AGCTTTAAAGTCGCCGAAGTTTT 59.686 39.130 16.38 0.49 0.00 2.43
80 81 4.039703 GCTTTAAAGTCGCCGAAGTTTTT 58.960 39.130 16.38 0.00 0.00 1.94
81 82 4.085772 GCTTTAAAGTCGCCGAAGTTTTTG 60.086 41.667 16.38 0.00 0.00 2.44
82 83 4.619437 TTAAAGTCGCCGAAGTTTTTGT 57.381 36.364 1.53 0.00 0.00 2.83
83 84 2.750301 AAGTCGCCGAAGTTTTTGTC 57.250 45.000 0.00 0.00 0.00 3.18
84 85 1.658994 AGTCGCCGAAGTTTTTGTCA 58.341 45.000 0.00 0.00 0.00 3.58
85 86 2.218603 AGTCGCCGAAGTTTTTGTCAT 58.781 42.857 0.00 0.00 0.00 3.06
86 87 2.616842 AGTCGCCGAAGTTTTTGTCATT 59.383 40.909 0.00 0.00 0.00 2.57
87 88 2.971261 GTCGCCGAAGTTTTTGTCATTC 59.029 45.455 0.00 0.00 0.00 2.67
88 89 2.875933 TCGCCGAAGTTTTTGTCATTCT 59.124 40.909 0.00 0.00 0.00 2.40
89 90 3.314080 TCGCCGAAGTTTTTGTCATTCTT 59.686 39.130 0.00 0.00 0.00 2.52
90 91 3.421888 CGCCGAAGTTTTTGTCATTCTTG 59.578 43.478 0.00 0.00 0.00 3.02
91 92 3.182372 GCCGAAGTTTTTGTCATTCTTGC 59.818 43.478 0.00 0.00 0.00 4.01
92 93 3.735746 CCGAAGTTTTTGTCATTCTTGCC 59.264 43.478 0.00 0.00 0.00 4.52
93 94 3.421888 CGAAGTTTTTGTCATTCTTGCCG 59.578 43.478 0.00 0.00 0.00 5.69
94 95 4.606961 GAAGTTTTTGTCATTCTTGCCGA 58.393 39.130 0.00 0.00 0.00 5.54
95 96 4.647424 AGTTTTTGTCATTCTTGCCGAA 57.353 36.364 0.00 0.00 35.78 4.30
96 97 5.200368 AGTTTTTGTCATTCTTGCCGAAT 57.800 34.783 0.00 0.00 43.03 3.34
97 98 5.600696 AGTTTTTGTCATTCTTGCCGAATT 58.399 33.333 0.00 0.00 40.33 2.17
98 99 6.048509 AGTTTTTGTCATTCTTGCCGAATTT 58.951 32.000 0.00 0.00 40.33 1.82
99 100 6.538381 AGTTTTTGTCATTCTTGCCGAATTTT 59.462 30.769 0.00 0.00 40.33 1.82
100 101 5.903764 TTTGTCATTCTTGCCGAATTTTG 57.096 34.783 0.00 0.00 40.33 2.44
101 102 3.316283 TGTCATTCTTGCCGAATTTTGC 58.684 40.909 0.00 0.00 40.33 3.68
102 103 2.667969 GTCATTCTTGCCGAATTTTGCC 59.332 45.455 0.00 0.00 40.33 4.52
103 104 2.001872 CATTCTTGCCGAATTTTGCCC 58.998 47.619 0.00 0.00 40.33 5.36
104 105 1.043816 TTCTTGCCGAATTTTGCCCA 58.956 45.000 0.00 0.00 0.00 5.36
105 106 1.043816 TCTTGCCGAATTTTGCCCAA 58.956 45.000 0.00 0.00 0.00 4.12
106 107 1.414181 TCTTGCCGAATTTTGCCCAAA 59.586 42.857 0.00 0.00 0.00 3.28
107 108 2.038295 TCTTGCCGAATTTTGCCCAAAT 59.962 40.909 0.00 0.00 36.57 2.32
108 109 2.557920 TGCCGAATTTTGCCCAAATT 57.442 40.000 3.89 3.89 46.10 1.82
109 110 2.856222 TGCCGAATTTTGCCCAAATTT 58.144 38.095 5.44 0.00 43.89 1.82
110 111 4.008074 TGCCGAATTTTGCCCAAATTTA 57.992 36.364 5.44 0.00 43.89 1.40
111 112 4.583871 TGCCGAATTTTGCCCAAATTTAT 58.416 34.783 5.44 0.00 43.89 1.40
112 113 5.006386 TGCCGAATTTTGCCCAAATTTATT 58.994 33.333 5.44 0.00 43.89 1.40
113 114 5.474876 TGCCGAATTTTGCCCAAATTTATTT 59.525 32.000 5.44 0.00 43.89 1.40
114 115 6.015940 TGCCGAATTTTGCCCAAATTTATTTT 60.016 30.769 5.44 0.00 43.89 1.82
115 116 6.865726 GCCGAATTTTGCCCAAATTTATTTTT 59.134 30.769 5.44 0.00 43.89 1.94
116 117 8.023706 GCCGAATTTTGCCCAAATTTATTTTTA 58.976 29.630 5.44 0.00 43.89 1.52
117 118 9.899226 CCGAATTTTGCCCAAATTTATTTTTAA 57.101 25.926 5.44 0.00 43.89 1.52
134 135 6.879188 TTTTTAAACTCTTTGAAACAGGCG 57.121 33.333 0.00 0.00 29.36 5.52
135 136 5.570234 TTTAAACTCTTTGAAACAGGCGT 57.430 34.783 0.00 0.00 0.00 5.68
136 137 3.692791 AAACTCTTTGAAACAGGCGTC 57.307 42.857 0.00 0.00 0.00 5.19
137 138 1.594331 ACTCTTTGAAACAGGCGTCC 58.406 50.000 0.00 0.00 0.00 4.79
138 139 1.141053 ACTCTTTGAAACAGGCGTCCT 59.859 47.619 0.00 0.00 0.00 3.85
175 176 4.554036 GCGGCTGGGACCCTGATC 62.554 72.222 21.06 10.65 0.00 2.92
176 177 3.083349 CGGCTGGGACCCTGATCA 61.083 66.667 21.06 0.00 0.00 2.92
177 178 2.914289 GGCTGGGACCCTGATCAG 59.086 66.667 21.06 16.24 0.00 2.90
178 179 2.191641 GCTGGGACCCTGATCAGC 59.808 66.667 21.06 12.57 44.34 4.26
179 180 2.914289 CTGGGACCCTGATCAGCC 59.086 66.667 17.76 13.11 0.00 4.85
180 181 2.692368 TGGGACCCTGATCAGCCC 60.692 66.667 23.31 23.31 39.29 5.19
181 182 2.367512 GGGACCCTGATCAGCCCT 60.368 66.667 22.97 7.08 35.86 5.19
182 183 1.074471 GGGACCCTGATCAGCCCTA 60.074 63.158 22.97 0.00 35.86 3.53
183 184 1.124477 GGGACCCTGATCAGCCCTAG 61.124 65.000 22.97 8.80 35.86 3.02
184 185 0.105453 GGACCCTGATCAGCCCTAGA 60.105 60.000 17.76 0.00 0.00 2.43
185 186 1.044611 GACCCTGATCAGCCCTAGAC 58.955 60.000 17.76 0.26 0.00 2.59
186 187 0.399233 ACCCTGATCAGCCCTAGACC 60.399 60.000 17.76 0.00 0.00 3.85
187 188 1.467678 CCCTGATCAGCCCTAGACCG 61.468 65.000 17.76 0.08 0.00 4.79
188 189 0.468214 CCTGATCAGCCCTAGACCGA 60.468 60.000 17.76 0.00 0.00 4.69
189 190 1.626686 CTGATCAGCCCTAGACCGAT 58.373 55.000 10.38 0.00 0.00 4.18
190 191 1.967066 CTGATCAGCCCTAGACCGATT 59.033 52.381 10.38 0.00 0.00 3.34
191 192 2.366916 CTGATCAGCCCTAGACCGATTT 59.633 50.000 10.38 0.00 0.00 2.17
192 193 2.771943 TGATCAGCCCTAGACCGATTTT 59.228 45.455 0.00 0.00 0.00 1.82
193 194 3.964688 TGATCAGCCCTAGACCGATTTTA 59.035 43.478 0.00 0.00 0.00 1.52
194 195 4.039245 TGATCAGCCCTAGACCGATTTTAG 59.961 45.833 0.00 0.00 0.00 1.85
195 196 2.102588 TCAGCCCTAGACCGATTTTAGC 59.897 50.000 0.00 0.00 0.00 3.09
196 197 1.068741 AGCCCTAGACCGATTTTAGCG 59.931 52.381 0.00 0.00 0.00 4.26
197 198 1.499049 CCCTAGACCGATTTTAGCGC 58.501 55.000 0.00 0.00 0.00 5.92
198 199 1.499049 CCTAGACCGATTTTAGCGCC 58.501 55.000 2.29 0.00 0.00 6.53
199 200 1.129326 CTAGACCGATTTTAGCGCCG 58.871 55.000 2.29 0.00 0.00 6.46
200 201 0.249155 TAGACCGATTTTAGCGCCGG 60.249 55.000 17.23 17.23 46.65 6.13
202 203 3.493213 CCGATTTTAGCGCCGGTT 58.507 55.556 2.29 0.00 37.40 4.44
203 204 1.350665 CCGATTTTAGCGCCGGTTC 59.649 57.895 2.29 0.00 37.40 3.62
204 205 1.363145 CCGATTTTAGCGCCGGTTCA 61.363 55.000 2.29 0.00 37.40 3.18
205 206 0.655733 CGATTTTAGCGCCGGTTCAT 59.344 50.000 2.29 0.00 0.00 2.57
206 207 1.332904 CGATTTTAGCGCCGGTTCATC 60.333 52.381 2.29 0.00 0.00 2.92
207 208 1.002792 GATTTTAGCGCCGGTTCATCC 60.003 52.381 2.29 0.00 0.00 3.51
208 209 1.027792 TTTTAGCGCCGGTTCATCCC 61.028 55.000 2.29 0.00 0.00 3.85
209 210 2.186602 TTTAGCGCCGGTTCATCCCA 62.187 55.000 2.29 0.00 0.00 4.37
210 211 2.587322 TTAGCGCCGGTTCATCCCAG 62.587 60.000 2.29 0.00 0.00 4.45
214 215 4.856801 CCGGTTCATCCCAGGCGG 62.857 72.222 0.00 0.00 0.00 6.13
216 217 4.424711 GGTTCATCCCAGGCGGCA 62.425 66.667 13.08 0.00 0.00 5.69
217 218 2.825836 GTTCATCCCAGGCGGCAG 60.826 66.667 13.08 2.03 0.00 4.85
218 219 3.329889 TTCATCCCAGGCGGCAGT 61.330 61.111 13.08 0.00 0.00 4.40
219 220 2.905996 TTCATCCCAGGCGGCAGTT 61.906 57.895 13.08 0.00 0.00 3.16
220 221 2.361610 CATCCCAGGCGGCAGTTT 60.362 61.111 13.08 0.00 0.00 2.66
221 222 1.978617 CATCCCAGGCGGCAGTTTT 60.979 57.895 13.08 0.00 0.00 2.43
222 223 1.228862 ATCCCAGGCGGCAGTTTTT 60.229 52.632 13.08 0.00 0.00 1.94
223 224 1.250840 ATCCCAGGCGGCAGTTTTTC 61.251 55.000 13.08 0.00 0.00 2.29
224 225 2.255252 CCAGGCGGCAGTTTTTCG 59.745 61.111 13.08 0.00 0.00 3.46
225 226 2.255252 CAGGCGGCAGTTTTTCGG 59.745 61.111 13.08 0.00 0.00 4.30
226 227 2.983592 AGGCGGCAGTTTTTCGGG 60.984 61.111 13.08 0.00 0.00 5.14
227 228 4.717629 GGCGGCAGTTTTTCGGGC 62.718 66.667 3.07 0.00 0.00 6.13
228 229 4.717629 GCGGCAGTTTTTCGGGCC 62.718 66.667 0.00 0.00 42.98 5.80
230 231 4.717629 GGCAGTTTTTCGGGCCGC 62.718 66.667 23.83 6.74 36.58 6.53
231 232 4.717629 GCAGTTTTTCGGGCCGCC 62.718 66.667 23.83 0.00 0.00 6.13
232 233 2.983592 CAGTTTTTCGGGCCGCCT 60.984 61.111 23.83 8.54 0.00 5.52
233 234 2.983592 AGTTTTTCGGGCCGCCTG 60.984 61.111 23.83 12.53 0.00 4.85
234 235 2.981350 GTTTTTCGGGCCGCCTGA 60.981 61.111 23.83 17.54 37.09 3.86
235 236 2.671619 TTTTTCGGGCCGCCTGAG 60.672 61.111 23.83 7.32 40.34 3.35
236 237 3.185299 TTTTTCGGGCCGCCTGAGA 62.185 57.895 23.83 14.09 40.34 3.27
237 238 3.605749 TTTTCGGGCCGCCTGAGAG 62.606 63.158 23.83 2.49 40.34 3.20
255 256 2.644992 GCCAAACGGCTGGAGTTG 59.355 61.111 9.09 0.00 46.85 3.16
256 257 2.644992 CCAAACGGCTGGAGTTGC 59.355 61.111 0.00 0.00 38.96 4.17
257 258 1.898574 CCAAACGGCTGGAGTTGCT 60.899 57.895 0.00 0.00 38.96 3.91
258 259 1.576421 CAAACGGCTGGAGTTGCTC 59.424 57.895 0.00 0.00 31.43 4.26
259 260 0.886490 CAAACGGCTGGAGTTGCTCT 60.886 55.000 0.00 0.00 31.43 4.09
260 261 0.685097 AAACGGCTGGAGTTGCTCTA 59.315 50.000 0.00 0.00 31.43 2.43
261 262 0.685097 AACGGCTGGAGTTGCTCTAA 59.315 50.000 0.00 0.00 0.00 2.10
262 263 0.037232 ACGGCTGGAGTTGCTCTAAC 60.037 55.000 0.00 0.00 39.65 2.34
294 295 8.791327 AAGAAAACAATGAAACTTTGGAATGT 57.209 26.923 0.00 0.00 0.00 2.71
295 296 8.200364 AGAAAACAATGAAACTTTGGAATGTG 57.800 30.769 0.00 0.00 0.00 3.21
296 297 8.040132 AGAAAACAATGAAACTTTGGAATGTGA 58.960 29.630 0.00 0.00 0.00 3.58
297 298 8.735692 AAAACAATGAAACTTTGGAATGTGAT 57.264 26.923 0.00 0.00 0.00 3.06
298 299 8.735692 AAACAATGAAACTTTGGAATGTGATT 57.264 26.923 0.00 0.00 0.00 2.57
299 300 8.735692 AACAATGAAACTTTGGAATGTGATTT 57.264 26.923 0.00 0.00 0.00 2.17
300 301 8.735692 ACAATGAAACTTTGGAATGTGATTTT 57.264 26.923 0.00 0.00 0.00 1.82
301 302 8.829612 ACAATGAAACTTTGGAATGTGATTTTC 58.170 29.630 0.00 0.00 0.00 2.29
302 303 9.048446 CAATGAAACTTTGGAATGTGATTTTCT 57.952 29.630 0.00 0.00 0.00 2.52
303 304 9.617523 AATGAAACTTTGGAATGTGATTTTCTT 57.382 25.926 0.00 0.00 0.00 2.52
304 305 9.617523 ATGAAACTTTGGAATGTGATTTTCTTT 57.382 25.926 0.00 0.00 0.00 2.52
305 306 9.447157 TGAAACTTTGGAATGTGATTTTCTTTT 57.553 25.926 0.00 0.00 0.00 2.27
308 309 9.447157 AACTTTGGAATGTGATTTTCTTTTTCA 57.553 25.926 0.00 0.00 0.00 2.69
309 310 9.447157 ACTTTGGAATGTGATTTTCTTTTTCAA 57.553 25.926 0.00 0.00 0.00 2.69
313 314 9.224267 TGGAATGTGATTTTCTTTTTCAAAACA 57.776 25.926 0.00 0.00 0.00 2.83
316 317 9.540431 AATGTGATTTTCTTTTTCAAAACAACG 57.460 25.926 0.00 0.00 0.00 4.10
317 318 7.513968 TGTGATTTTCTTTTTCAAAACAACGG 58.486 30.769 0.00 0.00 0.00 4.44
318 319 7.385205 TGTGATTTTCTTTTTCAAAACAACGGA 59.615 29.630 0.00 0.00 0.00 4.69
319 320 7.897800 GTGATTTTCTTTTTCAAAACAACGGAG 59.102 33.333 0.00 0.00 0.00 4.63
320 321 5.771602 TTTCTTTTTCAAAACAACGGAGC 57.228 34.783 0.00 0.00 0.00 4.70
321 322 4.712122 TCTTTTTCAAAACAACGGAGCT 57.288 36.364 0.00 0.00 0.00 4.09
322 323 4.668289 TCTTTTTCAAAACAACGGAGCTC 58.332 39.130 4.71 4.71 0.00 4.09
323 324 3.430333 TTTTCAAAACAACGGAGCTCC 57.570 42.857 23.79 23.79 0.00 4.70
324 325 2.045561 TTCAAAACAACGGAGCTCCA 57.954 45.000 31.67 6.55 35.14 3.86
325 326 1.593196 TCAAAACAACGGAGCTCCAG 58.407 50.000 31.67 24.69 35.14 3.86
326 327 0.040067 CAAAACAACGGAGCTCCAGC 60.040 55.000 31.67 5.96 42.49 4.85
327 328 0.465460 AAAACAACGGAGCTCCAGCA 60.465 50.000 31.67 0.00 45.16 4.41
328 329 1.166531 AAACAACGGAGCTCCAGCAC 61.167 55.000 31.67 5.16 45.16 4.40
329 330 2.743928 CAACGGAGCTCCAGCACC 60.744 66.667 31.67 5.08 46.33 5.01
334 335 4.809070 GAGCTCCAGCACCAAACT 57.191 55.556 0.87 0.00 45.16 2.66
335 336 3.027419 GAGCTCCAGCACCAAACTT 57.973 52.632 0.87 0.00 45.16 2.66
336 337 0.595095 GAGCTCCAGCACCAAACTTG 59.405 55.000 0.87 0.00 45.16 3.16
337 338 0.106519 AGCTCCAGCACCAAACTTGT 60.107 50.000 0.48 0.00 45.16 3.16
338 339 0.746659 GCTCCAGCACCAAACTTGTT 59.253 50.000 0.00 0.00 41.59 2.83
339 340 1.136891 GCTCCAGCACCAAACTTGTTT 59.863 47.619 0.00 0.00 41.59 2.83
340 341 2.418609 GCTCCAGCACCAAACTTGTTTT 60.419 45.455 0.00 0.00 41.59 2.43
341 342 3.447742 CTCCAGCACCAAACTTGTTTTC 58.552 45.455 0.00 0.00 0.00 2.29
342 343 3.096092 TCCAGCACCAAACTTGTTTTCT 58.904 40.909 0.00 0.00 0.00 2.52
343 344 4.274147 TCCAGCACCAAACTTGTTTTCTA 58.726 39.130 0.00 0.00 0.00 2.10
344 345 4.707448 TCCAGCACCAAACTTGTTTTCTAA 59.293 37.500 0.00 0.00 0.00 2.10
345 346 5.186021 TCCAGCACCAAACTTGTTTTCTAAA 59.814 36.000 0.00 0.00 0.00 1.85
346 347 6.048509 CCAGCACCAAACTTGTTTTCTAAAT 58.951 36.000 0.00 0.00 0.00 1.40
347 348 6.538381 CCAGCACCAAACTTGTTTTCTAAATT 59.462 34.615 0.00 0.00 0.00 1.82
348 349 7.065683 CCAGCACCAAACTTGTTTTCTAAATTT 59.934 33.333 0.00 0.00 0.00 1.82
349 350 8.450180 CAGCACCAAACTTGTTTTCTAAATTTT 58.550 29.630 0.00 0.00 0.00 1.82
350 351 9.008965 AGCACCAAACTTGTTTTCTAAATTTTT 57.991 25.926 0.00 0.00 0.00 1.94
373 374 9.959775 TTTTATGTCTTACGCAAAAACAAAAAG 57.040 25.926 0.00 0.00 0.00 2.27
374 375 8.690680 TTATGTCTTACGCAAAAACAAAAAGT 57.309 26.923 0.00 0.00 0.00 2.66
375 376 7.589574 ATGTCTTACGCAAAAACAAAAAGTT 57.410 28.000 0.00 0.00 43.89 2.66
376 377 8.690680 ATGTCTTACGCAAAAACAAAAAGTTA 57.309 26.923 0.00 0.00 40.26 2.24
377 378 8.164058 TGTCTTACGCAAAAACAAAAAGTTAG 57.836 30.769 0.00 0.00 40.26 2.34
378 379 7.808856 TGTCTTACGCAAAAACAAAAAGTTAGT 59.191 29.630 0.00 0.00 40.26 2.24
379 380 8.099704 GTCTTACGCAAAAACAAAAAGTTAGTG 58.900 33.333 0.00 0.00 40.26 2.74
380 381 5.198116 ACGCAAAAACAAAAAGTTAGTGC 57.802 34.783 0.00 0.00 42.39 4.40
381 382 4.092237 ACGCAAAAACAAAAAGTTAGTGCC 59.908 37.500 0.00 0.00 42.64 5.01
382 383 4.328712 CGCAAAAACAAAAAGTTAGTGCCT 59.671 37.500 0.00 0.00 42.64 4.75
383 384 5.163903 CGCAAAAACAAAAAGTTAGTGCCTT 60.164 36.000 0.00 0.00 42.64 4.35
384 385 6.607689 GCAAAAACAAAAAGTTAGTGCCTTT 58.392 32.000 0.00 0.00 41.09 3.11
385 386 7.081349 GCAAAAACAAAAAGTTAGTGCCTTTT 58.919 30.769 0.00 0.00 42.37 2.27
386 387 7.060518 GCAAAAACAAAAAGTTAGTGCCTTTTG 59.939 33.333 14.67 14.67 40.32 2.44
387 388 7.971183 AAAACAAAAAGTTAGTGCCTTTTGA 57.029 28.000 11.82 0.00 40.32 2.69
388 389 8.560355 AAAACAAAAAGTTAGTGCCTTTTGAT 57.440 26.923 11.82 0.00 40.32 2.57
389 390 9.660180 AAAACAAAAAGTTAGTGCCTTTTGATA 57.340 25.926 11.82 0.00 40.32 2.15
390 391 8.642908 AACAAAAAGTTAGTGCCTTTTGATAC 57.357 30.769 11.82 0.00 40.32 2.24
399 400 2.446435 GCCTTTTGATACAAGAGGCCA 58.554 47.619 25.41 0.00 45.53 5.36
421 424 6.338146 CCATTTTCGTTAGTCCTGTAGATGA 58.662 40.000 0.00 0.00 0.00 2.92
428 431 5.455849 CGTTAGTCCTGTAGATGATCAAACG 59.544 44.000 0.00 2.94 0.00 3.60
433 436 5.062308 GTCCTGTAGATGATCAAACGTTGAC 59.938 44.000 0.00 3.76 43.48 3.18
566 580 0.173481 TGACGCTGATACAGAGTGCC 59.827 55.000 12.20 1.20 43.91 5.01
569 583 1.142185 CGCTGATACAGAGTGCCACG 61.142 60.000 2.81 0.00 32.44 4.94
572 586 1.257750 TGATACAGAGTGCCACGCCT 61.258 55.000 0.00 0.00 0.00 5.52
573 587 0.807667 GATACAGAGTGCCACGCCTG 60.808 60.000 15.44 15.44 32.64 4.85
597 611 4.673580 CGACCTCCGACGATAGAAAGAAAA 60.674 45.833 0.00 0.00 41.76 2.29
598 612 4.745649 ACCTCCGACGATAGAAAGAAAAG 58.254 43.478 0.00 0.00 41.38 2.27
599 613 4.461781 ACCTCCGACGATAGAAAGAAAAGA 59.538 41.667 0.00 0.00 41.38 2.52
600 614 5.047519 ACCTCCGACGATAGAAAGAAAAGAA 60.048 40.000 0.00 0.00 41.38 2.52
601 615 5.867716 CCTCCGACGATAGAAAGAAAAGAAA 59.132 40.000 0.00 0.00 41.38 2.52
602 616 6.035112 CCTCCGACGATAGAAAGAAAAGAAAG 59.965 42.308 0.00 0.00 41.38 2.62
603 617 5.347907 TCCGACGATAGAAAGAAAAGAAAGC 59.652 40.000 0.00 0.00 41.38 3.51
641 655 3.381983 TCGACATGCCGCTGGAGT 61.382 61.111 0.00 0.00 0.00 3.85
750 766 2.441532 CTCGTCCTCGGCCCCTTA 60.442 66.667 0.00 0.00 37.69 2.69
765 781 1.607628 CCCTTACCGATCTACCTCGTG 59.392 57.143 0.00 0.00 36.93 4.35
1146 1162 2.677971 GCTCAATAGCTTCGCGGAA 58.322 52.632 6.13 0.00 45.85 4.30
1764 1824 3.838271 GCGCTGGTGATCTCCGGA 61.838 66.667 23.89 2.93 36.02 5.14
1806 1866 2.531601 GGACCTGGGGTTCGGGAAA 61.532 63.158 0.00 0.00 44.90 3.13
1996 2065 2.181021 CGGCGAGCTAAGGTTCGT 59.819 61.111 0.00 0.00 45.56 3.85
2053 2122 3.460103 GACAGTGTTGTCCTTCCGTAAA 58.540 45.455 0.00 0.00 46.47 2.01
2054 2123 3.200483 ACAGTGTTGTCCTTCCGTAAAC 58.800 45.455 0.00 0.00 29.46 2.01
2055 2124 3.199677 CAGTGTTGTCCTTCCGTAAACA 58.800 45.455 0.00 0.00 0.00 2.83
2056 2125 3.623960 CAGTGTTGTCCTTCCGTAAACAA 59.376 43.478 0.00 0.00 32.92 2.83
2057 2126 4.095185 CAGTGTTGTCCTTCCGTAAACAAA 59.905 41.667 0.00 0.00 33.75 2.83
2058 2127 4.885325 AGTGTTGTCCTTCCGTAAACAAAT 59.115 37.500 0.00 0.00 33.75 2.32
2059 2128 6.017770 CAGTGTTGTCCTTCCGTAAACAAATA 60.018 38.462 0.00 0.00 33.75 1.40
2060 2129 6.713450 AGTGTTGTCCTTCCGTAAACAAATAT 59.287 34.615 0.00 0.00 33.75 1.28
2061 2130 7.879160 AGTGTTGTCCTTCCGTAAACAAATATA 59.121 33.333 0.00 0.00 33.75 0.86
2062 2131 8.671028 GTGTTGTCCTTCCGTAAACAAATATAT 58.329 33.333 0.00 0.00 33.75 0.86
2063 2132 9.887629 TGTTGTCCTTCCGTAAACAAATATATA 57.112 29.630 0.00 0.00 33.75 0.86
2152 2221 7.331934 TGAGTAATAATGTTCTGTCAGTGAAGC 59.668 37.037 0.00 0.00 0.00 3.86
2159 2228 1.412710 TCTGTCAGTGAAGCGGTTCTT 59.587 47.619 26.05 13.02 37.83 2.52
2165 2234 1.416401 AGTGAAGCGGTTCTTTCTGGA 59.584 47.619 26.05 3.12 34.56 3.86
2168 2237 0.106149 AAGCGGTTCTTTCTGGACGT 59.894 50.000 0.00 0.00 0.00 4.34
2170 2239 1.566018 GCGGTTCTTTCTGGACGTGG 61.566 60.000 0.00 0.00 0.00 4.94
2171 2240 0.032952 CGGTTCTTTCTGGACGTGGA 59.967 55.000 0.00 0.00 0.00 4.02
2173 2242 1.608283 GGTTCTTTCTGGACGTGGAGG 60.608 57.143 0.00 0.00 0.00 4.30
2174 2243 1.343465 GTTCTTTCTGGACGTGGAGGA 59.657 52.381 0.00 0.00 0.00 3.71
2176 2245 2.257207 TCTTTCTGGACGTGGAGGATT 58.743 47.619 0.00 0.00 0.00 3.01
2178 2247 3.835978 TCTTTCTGGACGTGGAGGATTTA 59.164 43.478 0.00 0.00 0.00 1.40
2179 2248 4.285003 TCTTTCTGGACGTGGAGGATTTAA 59.715 41.667 0.00 0.00 0.00 1.52
2180 2249 3.887621 TCTGGACGTGGAGGATTTAAG 57.112 47.619 0.00 0.00 0.00 1.85
2274 2362 6.668541 TTGATAGATGTTCTAACTGCTTGC 57.331 37.500 0.00 0.00 31.96 4.01
2296 3191 9.361315 CTTGCAAATTTTCATTATGAGATCACA 57.639 29.630 0.00 0.00 0.00 3.58
2305 3200 6.581712 TCATTATGAGATCACATTCGTGGAA 58.418 36.000 11.02 0.00 43.79 3.53
2307 3202 2.621338 TGAGATCACATTCGTGGAAGC 58.379 47.619 0.00 0.00 43.79 3.86
2308 3203 1.936547 GAGATCACATTCGTGGAAGCC 59.063 52.381 0.00 0.00 43.79 4.35
2310 3205 1.369091 ATCACATTCGTGGAAGCCGC 61.369 55.000 0.00 0.00 43.79 6.53
2318 3213 2.357034 TGGAAGCCGCGACAGAAC 60.357 61.111 8.23 0.00 0.00 3.01
2321 3216 1.204312 GAAGCCGCGACAGAACAAC 59.796 57.895 8.23 0.00 0.00 3.32
2326 3221 1.462791 CCGCGACAGAACAACAAAAC 58.537 50.000 8.23 0.00 0.00 2.43
2327 3222 1.462791 CGCGACAGAACAACAAAACC 58.537 50.000 0.00 0.00 0.00 3.27
2335 3230 2.293399 AGAACAACAAAACCGATGCTCC 59.707 45.455 0.00 0.00 0.00 4.70
2336 3231 1.686355 ACAACAAAACCGATGCTCCA 58.314 45.000 0.00 0.00 0.00 3.86
2343 3238 2.368655 AACCGATGCTCCAAAAATGC 57.631 45.000 0.00 0.00 0.00 3.56
2344 3239 1.255882 ACCGATGCTCCAAAAATGCA 58.744 45.000 0.00 0.00 41.13 3.96
2346 3241 1.994779 CCGATGCTCCAAAAATGCAAC 59.005 47.619 0.00 0.00 40.24 4.17
2350 3245 4.143263 CGATGCTCCAAAAATGCAACTTTC 60.143 41.667 0.00 0.00 40.24 2.62
2351 3246 4.134379 TGCTCCAAAAATGCAACTTTCA 57.866 36.364 0.00 0.00 33.48 2.69
2399 3321 7.821595 TGTGATCTCATGATGAAAATTTTGC 57.178 32.000 8.47 1.07 32.19 3.68
2415 3337 6.747659 AATTTTGCAAACACGTAGAACATC 57.252 33.333 12.39 0.00 0.00 3.06
2421 3343 4.376413 GCAAACACGTAGAACATCTGTCAG 60.376 45.833 0.00 0.00 0.00 3.51
2422 3344 4.585955 AACACGTAGAACATCTGTCAGT 57.414 40.909 0.00 0.00 0.00 3.41
2424 3346 3.318275 ACACGTAGAACATCTGTCAGTGT 59.682 43.478 0.00 1.28 35.76 3.55
2430 3352 5.290493 AGAACATCTGTCAGTGTTTACCA 57.710 39.130 16.71 0.00 38.57 3.25
2431 3353 5.869579 AGAACATCTGTCAGTGTTTACCAT 58.130 37.500 16.71 0.91 38.57 3.55
2499 3431 0.251033 TGCAGCAGGCTCATTTGAGT 60.251 50.000 9.21 0.00 43.85 3.41
2502 3434 2.434428 CAGCAGGCTCATTTGAGTTCT 58.566 47.619 9.21 4.96 43.85 3.01
2508 3440 5.248640 CAGGCTCATTTGAGTTCTTCCTTA 58.751 41.667 9.21 0.00 43.85 2.69
2554 3486 5.026790 AGCTTCAATAGTGTACTCCCTCTT 58.973 41.667 0.00 0.00 0.00 2.85
2555 3487 5.485708 AGCTTCAATAGTGTACTCCCTCTTT 59.514 40.000 0.00 0.00 0.00 2.52
2556 3488 5.582665 GCTTCAATAGTGTACTCCCTCTTTG 59.417 44.000 0.00 0.00 0.00 2.77
2560 3492 8.197592 TCAATAGTGTACTCCCTCTTTGTTTA 57.802 34.615 0.00 0.00 0.00 2.01
2569 3501 7.086685 ACTCCCTCTTTGTTTATTTACTCCA 57.913 36.000 0.00 0.00 0.00 3.86
2571 3503 7.611855 ACTCCCTCTTTGTTTATTTACTCCATG 59.388 37.037 0.00 0.00 0.00 3.66
2574 3506 7.029563 CCTCTTTGTTTATTTACTCCATGTGC 58.970 38.462 0.00 0.00 0.00 4.57
2575 3507 6.919721 TCTTTGTTTATTTACTCCATGTGCC 58.080 36.000 0.00 0.00 0.00 5.01
2585 3517 1.619827 CTCCATGTGCCACCATTGTTT 59.380 47.619 0.00 0.00 0.00 2.83
2587 3519 3.234353 TCCATGTGCCACCATTGTTTAA 58.766 40.909 0.00 0.00 0.00 1.52
2590 3522 4.502950 CCATGTGCCACCATTGTTTAAAGT 60.503 41.667 0.00 0.00 0.00 2.66
2591 3523 4.744795 TGTGCCACCATTGTTTAAAGTT 57.255 36.364 0.00 0.00 0.00 2.66
2593 3525 6.222038 TGTGCCACCATTGTTTAAAGTTTA 57.778 33.333 0.00 0.00 0.00 2.01
2594 3526 6.640518 TGTGCCACCATTGTTTAAAGTTTAA 58.359 32.000 3.88 3.88 0.00 1.52
2595 3527 7.103641 TGTGCCACCATTGTTTAAAGTTTAAA 58.896 30.769 15.29 15.29 0.00 1.52
2596 3528 7.770897 TGTGCCACCATTGTTTAAAGTTTAAAT 59.229 29.630 20.66 5.66 0.00 1.40
2597 3529 8.616942 GTGCCACCATTGTTTAAAGTTTAAATT 58.383 29.630 20.66 8.94 0.00 1.82
2598 3530 9.178758 TGCCACCATTGTTTAAAGTTTAAATTT 57.821 25.926 20.66 8.65 0.00 1.82
2764 3697 6.808212 ACACATTTTGTCTTCAGTCAAAACTG 59.192 34.615 12.28 12.35 44.17 3.16
2814 3747 6.126739 GGAAGTATATTCCTCAAAGTGGACCT 60.127 42.308 0.00 0.00 35.73 3.85
2815 3748 6.240549 AGTATATTCCTCAAAGTGGACCTG 57.759 41.667 0.00 0.00 32.65 4.00
2851 3784 4.238514 GGTAGGATTGTGCGTCTCATATC 58.761 47.826 0.00 0.00 0.00 1.63
2852 3785 4.262036 GGTAGGATTGTGCGTCTCATATCA 60.262 45.833 0.00 0.00 0.00 2.15
2853 3786 4.406648 AGGATTGTGCGTCTCATATCAA 57.593 40.909 0.00 0.00 0.00 2.57
2854 3787 4.965814 AGGATTGTGCGTCTCATATCAAT 58.034 39.130 0.00 0.00 0.00 2.57
2855 3788 5.371526 AGGATTGTGCGTCTCATATCAATT 58.628 37.500 0.00 0.00 0.00 2.32
2856 3789 5.824624 AGGATTGTGCGTCTCATATCAATTT 59.175 36.000 0.00 0.00 0.00 1.82
2857 3790 6.319658 AGGATTGTGCGTCTCATATCAATTTT 59.680 34.615 0.00 0.00 0.00 1.82
2858 3791 6.974622 GGATTGTGCGTCTCATATCAATTTTT 59.025 34.615 0.00 0.00 0.00 1.94
2897 3830 8.948853 CGAAGCTTTTATTTAACTCATCACAA 57.051 30.769 0.00 0.00 0.00 3.33
2898 3831 9.559958 CGAAGCTTTTATTTAACTCATCACAAT 57.440 29.630 0.00 0.00 0.00 2.71
2908 3841 5.964958 AACTCATCACAATGTTTACAGGG 57.035 39.130 0.00 0.00 34.32 4.45
2909 3842 4.335416 ACTCATCACAATGTTTACAGGGG 58.665 43.478 0.00 0.00 34.32 4.79
2910 3843 3.088532 TCATCACAATGTTTACAGGGGC 58.911 45.455 0.00 0.00 34.32 5.80
2911 3844 1.529226 TCACAATGTTTACAGGGGCG 58.471 50.000 0.00 0.00 0.00 6.13
2912 3845 1.072489 TCACAATGTTTACAGGGGCGA 59.928 47.619 0.00 0.00 0.00 5.54
2913 3846 1.883275 CACAATGTTTACAGGGGCGAA 59.117 47.619 0.00 0.00 0.00 4.70
2914 3847 2.294791 CACAATGTTTACAGGGGCGAAA 59.705 45.455 0.00 0.00 0.00 3.46
2915 3848 2.556622 ACAATGTTTACAGGGGCGAAAG 59.443 45.455 0.00 0.00 0.00 2.62
2916 3849 2.817258 CAATGTTTACAGGGGCGAAAGA 59.183 45.455 0.00 0.00 0.00 2.52
2917 3850 2.871096 TGTTTACAGGGGCGAAAGAT 57.129 45.000 0.00 0.00 0.00 2.40
2918 3851 3.985019 TGTTTACAGGGGCGAAAGATA 57.015 42.857 0.00 0.00 0.00 1.98
2919 3852 3.869065 TGTTTACAGGGGCGAAAGATAG 58.131 45.455 0.00 0.00 0.00 2.08
2920 3853 3.262405 TGTTTACAGGGGCGAAAGATAGT 59.738 43.478 0.00 0.00 0.00 2.12
2921 3854 4.259356 GTTTACAGGGGCGAAAGATAGTT 58.741 43.478 0.00 0.00 0.00 2.24
2922 3855 2.693267 ACAGGGGCGAAAGATAGTTC 57.307 50.000 0.00 0.00 0.00 3.01
2923 3856 1.906574 ACAGGGGCGAAAGATAGTTCA 59.093 47.619 0.00 0.00 0.00 3.18
2924 3857 2.280628 CAGGGGCGAAAGATAGTTCAC 58.719 52.381 0.00 0.00 0.00 3.18
2925 3858 1.209747 AGGGGCGAAAGATAGTTCACC 59.790 52.381 0.00 0.00 0.00 4.02
2926 3859 1.209747 GGGGCGAAAGATAGTTCACCT 59.790 52.381 0.00 0.00 31.55 4.00
2927 3860 2.280628 GGGCGAAAGATAGTTCACCTG 58.719 52.381 0.00 0.00 31.55 4.00
2928 3861 2.280628 GGCGAAAGATAGTTCACCTGG 58.719 52.381 0.00 0.00 28.80 4.45
2929 3862 2.280628 GCGAAAGATAGTTCACCTGGG 58.719 52.381 0.00 0.00 0.00 4.45
2930 3863 2.354805 GCGAAAGATAGTTCACCTGGGT 60.355 50.000 0.00 0.00 0.00 4.51
2931 3864 3.868754 GCGAAAGATAGTTCACCTGGGTT 60.869 47.826 0.00 0.00 0.00 4.11
2932 3865 3.684788 CGAAAGATAGTTCACCTGGGTTG 59.315 47.826 0.00 0.00 0.00 3.77
2933 3866 2.789409 AGATAGTTCACCTGGGTTGC 57.211 50.000 0.00 0.00 0.00 4.17
2934 3867 1.282157 AGATAGTTCACCTGGGTTGCC 59.718 52.381 0.00 0.00 0.00 4.52
2935 3868 1.282157 GATAGTTCACCTGGGTTGCCT 59.718 52.381 0.00 0.00 0.00 4.75
2936 3869 2.032965 TAGTTCACCTGGGTTGCCTA 57.967 50.000 0.00 0.00 0.00 3.93
2937 3870 1.145571 AGTTCACCTGGGTTGCCTAA 58.854 50.000 0.00 0.00 0.00 2.69
2938 3871 1.202891 AGTTCACCTGGGTTGCCTAAC 60.203 52.381 0.00 0.00 36.04 2.34
2947 3880 1.946267 GTTGCCTAACCACACACGG 59.054 57.895 0.00 0.00 0.00 4.94
2948 3881 1.894756 TTGCCTAACCACACACGGC 60.895 57.895 0.00 0.00 41.06 5.68
2949 3882 3.419759 GCCTAACCACACACGGCG 61.420 66.667 4.80 4.80 0.00 6.46
2950 3883 2.740826 CCTAACCACACACGGCGG 60.741 66.667 13.24 2.35 0.00 6.13
2951 3884 3.419759 CTAACCACACACGGCGGC 61.420 66.667 13.24 0.00 0.00 6.53
2952 3885 4.992511 TAACCACACACGGCGGCC 62.993 66.667 13.24 9.54 0.00 6.13
2963 3896 3.365265 GGCGGCCAACTCCAAGTG 61.365 66.667 15.62 0.00 0.00 3.16
2964 3897 2.281484 GCGGCCAACTCCAAGTGA 60.281 61.111 2.24 0.00 0.00 3.41
2966 3899 1.371183 CGGCCAACTCCAAGTGAGA 59.629 57.895 2.24 0.00 44.42 3.27
2967 3900 0.671781 CGGCCAACTCCAAGTGAGAG 60.672 60.000 2.24 0.00 44.42 3.20
2968 3901 0.687354 GGCCAACTCCAAGTGAGAGA 59.313 55.000 0.00 0.00 44.42 3.10
2969 3902 1.338579 GGCCAACTCCAAGTGAGAGAG 60.339 57.143 0.00 0.00 44.42 3.20
2970 3903 1.943507 GCCAACTCCAAGTGAGAGAGC 60.944 57.143 0.00 0.00 44.42 4.09
2971 3904 1.345741 CCAACTCCAAGTGAGAGAGCA 59.654 52.381 0.00 0.00 44.42 4.26
2972 3905 2.027377 CCAACTCCAAGTGAGAGAGCAT 60.027 50.000 0.00 0.00 44.42 3.79
2973 3906 3.001414 CAACTCCAAGTGAGAGAGCATG 58.999 50.000 0.00 0.00 44.42 4.06
2974 3907 1.066286 ACTCCAAGTGAGAGAGCATGC 60.066 52.381 10.51 10.51 44.42 4.06
2975 3908 1.207570 CTCCAAGTGAGAGAGCATGCT 59.792 52.381 22.92 22.92 44.42 3.79
2976 3909 1.627329 TCCAAGTGAGAGAGCATGCTT 59.373 47.619 23.61 11.87 0.00 3.91
2977 3910 2.008329 CCAAGTGAGAGAGCATGCTTC 58.992 52.381 23.61 19.59 0.00 3.86
2978 3911 2.614734 CCAAGTGAGAGAGCATGCTTCA 60.615 50.000 23.61 18.75 0.00 3.02
2979 3912 2.383368 AGTGAGAGAGCATGCTTCAC 57.617 50.000 30.71 30.71 0.00 3.18
2980 3913 1.901159 AGTGAGAGAGCATGCTTCACT 59.099 47.619 33.19 33.19 32.87 3.41
2981 3914 3.095332 AGTGAGAGAGCATGCTTCACTA 58.905 45.455 35.67 17.61 35.53 2.74
2982 3915 3.513119 AGTGAGAGAGCATGCTTCACTAA 59.487 43.478 35.67 20.96 35.53 2.24
2983 3916 4.020751 AGTGAGAGAGCATGCTTCACTAAA 60.021 41.667 35.67 19.09 35.53 1.85
2984 3917 4.874966 GTGAGAGAGCATGCTTCACTAAAT 59.125 41.667 30.60 12.70 0.00 1.40
2985 3918 5.353678 GTGAGAGAGCATGCTTCACTAAATT 59.646 40.000 30.60 12.04 0.00 1.82
2986 3919 5.353400 TGAGAGAGCATGCTTCACTAAATTG 59.647 40.000 23.61 0.00 0.00 2.32
2987 3920 5.251764 AGAGAGCATGCTTCACTAAATTGT 58.748 37.500 23.61 0.00 0.00 2.71
2988 3921 5.123502 AGAGAGCATGCTTCACTAAATTGTG 59.876 40.000 23.61 0.00 39.15 3.33
2989 3922 5.005740 AGAGCATGCTTCACTAAATTGTGA 58.994 37.500 23.61 0.00 44.17 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.792947 GCCCGTGATTAGAGGCCGA 61.793 63.158 0.00 0.00 39.60 5.54
5 6 1.751437 AAAAGCCCGTGATTAGAGGC 58.249 50.000 0.00 0.00 46.13 4.70
43 44 8.500773 CGACTTTAAAGCTGTTTTTACATAGGA 58.499 33.333 15.24 0.00 0.00 2.94
44 45 7.270579 GCGACTTTAAAGCTGTTTTTACATAGG 59.729 37.037 15.24 0.00 0.00 2.57
45 46 7.270579 GGCGACTTTAAAGCTGTTTTTACATAG 59.729 37.037 15.24 0.00 0.00 2.23
46 47 7.079475 GGCGACTTTAAAGCTGTTTTTACATA 58.921 34.615 15.24 0.00 0.00 2.29
47 48 5.918576 GGCGACTTTAAAGCTGTTTTTACAT 59.081 36.000 15.24 0.00 0.00 2.29
48 49 5.275494 GGCGACTTTAAAGCTGTTTTTACA 58.725 37.500 15.24 0.00 0.00 2.41
49 50 4.377738 CGGCGACTTTAAAGCTGTTTTTAC 59.622 41.667 15.24 0.00 32.96 2.01
50 51 4.272991 TCGGCGACTTTAAAGCTGTTTTTA 59.727 37.500 15.24 0.00 38.34 1.52
51 52 3.065648 TCGGCGACTTTAAAGCTGTTTTT 59.934 39.130 15.24 0.00 38.34 1.94
52 53 2.614983 TCGGCGACTTTAAAGCTGTTTT 59.385 40.909 15.24 0.00 38.34 2.43
53 54 2.215196 TCGGCGACTTTAAAGCTGTTT 58.785 42.857 15.24 0.00 38.34 2.83
54 55 1.873698 TCGGCGACTTTAAAGCTGTT 58.126 45.000 15.24 0.00 38.34 3.16
55 56 1.798813 CTTCGGCGACTTTAAAGCTGT 59.201 47.619 10.16 0.00 38.34 4.40
56 57 1.798813 ACTTCGGCGACTTTAAAGCTG 59.201 47.619 10.16 7.68 38.53 4.24
57 58 2.165319 ACTTCGGCGACTTTAAAGCT 57.835 45.000 10.16 2.74 0.00 3.74
58 59 2.963498 AACTTCGGCGACTTTAAAGC 57.037 45.000 10.16 7.27 0.00 3.51
59 60 5.032220 ACAAAAACTTCGGCGACTTTAAAG 58.968 37.500 10.16 13.76 0.00 1.85
60 61 4.984205 ACAAAAACTTCGGCGACTTTAAA 58.016 34.783 10.16 0.00 0.00 1.52
61 62 4.094590 TGACAAAAACTTCGGCGACTTTAA 59.905 37.500 10.16 0.00 0.00 1.52
62 63 3.622163 TGACAAAAACTTCGGCGACTTTA 59.378 39.130 10.16 0.00 0.00 1.85
63 64 2.420722 TGACAAAAACTTCGGCGACTTT 59.579 40.909 10.16 7.56 0.00 2.66
64 65 2.011222 TGACAAAAACTTCGGCGACTT 58.989 42.857 10.16 0.17 0.00 3.01
65 66 1.658994 TGACAAAAACTTCGGCGACT 58.341 45.000 10.16 0.00 0.00 4.18
66 67 2.681152 ATGACAAAAACTTCGGCGAC 57.319 45.000 10.16 0.00 0.00 5.19
67 68 2.875933 AGAATGACAAAAACTTCGGCGA 59.124 40.909 4.99 4.99 0.00 5.54
68 69 3.268013 AGAATGACAAAAACTTCGGCG 57.732 42.857 0.00 0.00 0.00 6.46
69 70 3.182372 GCAAGAATGACAAAAACTTCGGC 59.818 43.478 0.00 0.00 0.00 5.54
70 71 3.735746 GGCAAGAATGACAAAAACTTCGG 59.264 43.478 0.00 0.00 33.41 4.30
71 72 3.421888 CGGCAAGAATGACAAAAACTTCG 59.578 43.478 0.00 0.00 32.33 3.79
72 73 4.606961 TCGGCAAGAATGACAAAAACTTC 58.393 39.130 0.00 0.00 32.33 3.01
73 74 4.647424 TCGGCAAGAATGACAAAAACTT 57.353 36.364 0.00 0.00 32.33 2.66
74 75 4.647424 TTCGGCAAGAATGACAAAAACT 57.353 36.364 0.00 0.00 32.33 2.66
85 86 1.043816 TGGGCAAAATTCGGCAAGAA 58.956 45.000 4.01 0.00 43.93 2.52
86 87 1.043816 TTGGGCAAAATTCGGCAAGA 58.956 45.000 4.01 0.00 0.00 3.02
87 88 1.876322 TTTGGGCAAAATTCGGCAAG 58.124 45.000 4.01 0.00 0.00 4.01
88 89 2.557920 ATTTGGGCAAAATTCGGCAA 57.442 40.000 0.00 0.00 34.72 4.52
89 90 2.557920 AATTTGGGCAAAATTCGGCA 57.442 40.000 6.76 0.00 43.57 5.69
90 91 5.559427 AATAAATTTGGGCAAAATTCGGC 57.441 34.783 12.82 0.00 45.73 5.54
91 92 9.899226 TTAAAAATAAATTTGGGCAAAATTCGG 57.101 25.926 12.82 0.00 45.73 4.30
108 109 9.026074 CGCCTGTTTCAAAGAGTTTAAAAATAA 57.974 29.630 0.00 0.00 0.00 1.40
109 110 8.192110 ACGCCTGTTTCAAAGAGTTTAAAAATA 58.808 29.630 0.00 0.00 0.00 1.40
110 111 7.039270 ACGCCTGTTTCAAAGAGTTTAAAAAT 58.961 30.769 0.00 0.00 0.00 1.82
111 112 6.391537 ACGCCTGTTTCAAAGAGTTTAAAAA 58.608 32.000 0.00 0.00 0.00 1.94
112 113 5.956642 ACGCCTGTTTCAAAGAGTTTAAAA 58.043 33.333 0.00 0.00 0.00 1.52
113 114 5.449451 GGACGCCTGTTTCAAAGAGTTTAAA 60.449 40.000 0.00 0.00 0.00 1.52
114 115 4.035909 GGACGCCTGTTTCAAAGAGTTTAA 59.964 41.667 0.00 0.00 0.00 1.52
115 116 3.562557 GGACGCCTGTTTCAAAGAGTTTA 59.437 43.478 0.00 0.00 0.00 2.01
116 117 2.357952 GGACGCCTGTTTCAAAGAGTTT 59.642 45.455 0.00 0.00 0.00 2.66
117 118 1.947456 GGACGCCTGTTTCAAAGAGTT 59.053 47.619 0.00 0.00 0.00 3.01
118 119 1.141053 AGGACGCCTGTTTCAAAGAGT 59.859 47.619 0.00 0.00 29.57 3.24
119 120 1.532868 CAGGACGCCTGTTTCAAAGAG 59.467 52.381 15.27 0.00 45.82 2.85
120 121 1.593196 CAGGACGCCTGTTTCAAAGA 58.407 50.000 15.27 0.00 45.82 2.52
158 159 4.554036 GATCAGGGTCCCAGCCGC 62.554 72.222 11.55 0.00 41.56 6.53
159 160 3.083349 TGATCAGGGTCCCAGCCG 61.083 66.667 11.55 0.00 41.56 5.52
160 161 2.914289 CTGATCAGGGTCCCAGCC 59.086 66.667 15.38 0.00 35.59 4.85
161 162 2.191641 GCTGATCAGGGTCCCAGC 59.808 66.667 23.89 6.01 44.00 4.85
162 163 2.750657 GGGCTGATCAGGGTCCCAG 61.751 68.421 24.50 1.24 36.96 4.45
163 164 1.897037 TAGGGCTGATCAGGGTCCCA 61.897 60.000 28.57 16.95 39.42 4.37
164 165 1.074471 TAGGGCTGATCAGGGTCCC 60.074 63.158 23.89 23.31 37.24 4.46
165 166 0.105453 TCTAGGGCTGATCAGGGTCC 60.105 60.000 23.89 15.90 0.00 4.46
166 167 1.044611 GTCTAGGGCTGATCAGGGTC 58.955 60.000 23.89 7.53 0.00 4.46
167 168 0.399233 GGTCTAGGGCTGATCAGGGT 60.399 60.000 23.89 0.00 0.00 4.34
168 169 1.467678 CGGTCTAGGGCTGATCAGGG 61.468 65.000 23.89 0.81 0.00 4.45
169 170 0.468214 TCGGTCTAGGGCTGATCAGG 60.468 60.000 23.89 7.19 0.00 3.86
170 171 1.626686 ATCGGTCTAGGGCTGATCAG 58.373 55.000 18.84 18.84 0.00 2.90
171 172 2.088104 AATCGGTCTAGGGCTGATCA 57.912 50.000 0.00 0.00 32.05 2.92
172 173 3.477210 AAAATCGGTCTAGGGCTGATC 57.523 47.619 9.09 0.00 32.05 2.92
173 174 3.244249 GCTAAAATCGGTCTAGGGCTGAT 60.244 47.826 4.41 4.41 33.73 2.90
174 175 2.102588 GCTAAAATCGGTCTAGGGCTGA 59.897 50.000 0.00 0.00 0.00 4.26
175 176 2.484889 GCTAAAATCGGTCTAGGGCTG 58.515 52.381 0.00 0.00 0.00 4.85
176 177 1.068741 CGCTAAAATCGGTCTAGGGCT 59.931 52.381 0.00 0.00 0.00 5.19
177 178 1.499049 CGCTAAAATCGGTCTAGGGC 58.501 55.000 0.00 0.00 0.00 5.19
178 179 1.499049 GCGCTAAAATCGGTCTAGGG 58.501 55.000 0.00 0.00 0.00 3.53
179 180 1.499049 GGCGCTAAAATCGGTCTAGG 58.501 55.000 7.64 0.00 0.00 3.02
180 181 1.129326 CGGCGCTAAAATCGGTCTAG 58.871 55.000 7.64 0.00 0.00 2.43
181 182 0.249155 CCGGCGCTAAAATCGGTCTA 60.249 55.000 7.64 0.00 37.92 2.59
182 183 1.520787 CCGGCGCTAAAATCGGTCT 60.521 57.895 7.64 0.00 37.92 3.85
183 184 3.011583 CCGGCGCTAAAATCGGTC 58.988 61.111 7.64 0.00 37.92 4.79
185 186 1.350665 GAACCGGCGCTAAAATCGG 59.649 57.895 17.23 17.23 46.95 4.18
186 187 0.655733 ATGAACCGGCGCTAAAATCG 59.344 50.000 7.64 0.00 0.00 3.34
187 188 1.002792 GGATGAACCGGCGCTAAAATC 60.003 52.381 7.64 3.67 0.00 2.17
188 189 1.021968 GGATGAACCGGCGCTAAAAT 58.978 50.000 7.64 0.00 0.00 1.82
189 190 1.027792 GGGATGAACCGGCGCTAAAA 61.028 55.000 7.64 0.00 40.11 1.52
190 191 1.450669 GGGATGAACCGGCGCTAAA 60.451 57.895 7.64 0.00 40.11 1.85
191 192 2.188469 GGGATGAACCGGCGCTAA 59.812 61.111 7.64 0.00 40.11 3.09
192 193 3.078196 TGGGATGAACCGGCGCTA 61.078 61.111 7.64 0.00 40.11 4.26
193 194 4.473520 CTGGGATGAACCGGCGCT 62.474 66.667 7.64 0.00 40.11 5.92
197 198 4.856801 CCGCCTGGGATGAACCGG 62.857 72.222 0.00 0.00 40.11 5.28
199 200 4.424711 TGCCGCCTGGGATGAACC 62.425 66.667 0.00 0.00 38.47 3.62
200 201 2.825836 CTGCCGCCTGGGATGAAC 60.826 66.667 0.00 0.00 38.47 3.18
201 202 2.424842 AAACTGCCGCCTGGGATGAA 62.425 55.000 0.00 0.00 38.47 2.57
202 203 2.424842 AAAACTGCCGCCTGGGATGA 62.425 55.000 0.00 0.00 38.47 2.92
203 204 1.535204 AAAAACTGCCGCCTGGGATG 61.535 55.000 0.00 0.00 38.47 3.51
204 205 1.228862 AAAAACTGCCGCCTGGGAT 60.229 52.632 0.00 0.00 38.47 3.85
205 206 1.901464 GAAAAACTGCCGCCTGGGA 60.901 57.895 0.00 0.00 38.47 4.37
206 207 2.650778 GAAAAACTGCCGCCTGGG 59.349 61.111 0.00 0.00 39.58 4.45
207 208 2.255252 CGAAAAACTGCCGCCTGG 59.745 61.111 0.00 0.00 38.77 4.45
208 209 2.255252 CCGAAAAACTGCCGCCTG 59.745 61.111 0.00 0.00 0.00 4.85
209 210 2.983592 CCCGAAAAACTGCCGCCT 60.984 61.111 0.00 0.00 0.00 5.52
210 211 4.717629 GCCCGAAAAACTGCCGCC 62.718 66.667 0.00 0.00 0.00 6.13
211 212 4.717629 GGCCCGAAAAACTGCCGC 62.718 66.667 0.00 0.00 33.59 6.53
213 214 4.717629 GCGGCCCGAAAAACTGCC 62.718 66.667 7.68 0.00 40.54 4.85
214 215 4.717629 GGCGGCCCGAAAAACTGC 62.718 66.667 7.68 0.00 34.88 4.40
215 216 2.983592 AGGCGGCCCGAAAAACTG 60.984 61.111 17.02 0.00 35.76 3.16
216 217 2.983592 CAGGCGGCCCGAAAAACT 60.984 61.111 17.02 0.00 35.76 2.66
217 218 2.978018 CTCAGGCGGCCCGAAAAAC 61.978 63.158 17.02 0.00 35.76 2.43
218 219 2.671619 CTCAGGCGGCCCGAAAAA 60.672 61.111 17.02 0.00 35.76 1.94
219 220 3.605749 CTCTCAGGCGGCCCGAAAA 62.606 63.158 17.02 0.99 35.76 2.29
220 221 4.082523 CTCTCAGGCGGCCCGAAA 62.083 66.667 17.02 0.00 35.76 3.46
239 240 1.856265 GAGCAACTCCAGCCGTTTGG 61.856 60.000 0.00 0.00 39.70 3.28
240 241 0.886490 AGAGCAACTCCAGCCGTTTG 60.886 55.000 0.00 0.00 0.00 2.93
241 242 0.685097 TAGAGCAACTCCAGCCGTTT 59.315 50.000 0.00 0.00 0.00 3.60
242 243 0.685097 TTAGAGCAACTCCAGCCGTT 59.315 50.000 0.00 0.00 0.00 4.44
243 244 0.037232 GTTAGAGCAACTCCAGCCGT 60.037 55.000 0.00 0.00 34.06 5.68
244 245 0.247736 AGTTAGAGCAACTCCAGCCG 59.752 55.000 0.00 0.00 44.48 5.52
245 246 3.828875 ATAGTTAGAGCAACTCCAGCC 57.171 47.619 0.00 0.00 44.48 4.85
246 247 7.549488 TCTTAAAATAGTTAGAGCAACTCCAGC 59.451 37.037 0.00 0.00 44.48 4.85
247 248 9.436957 TTCTTAAAATAGTTAGAGCAACTCCAG 57.563 33.333 0.00 0.00 44.48 3.86
248 249 9.787435 TTTCTTAAAATAGTTAGAGCAACTCCA 57.213 29.630 0.00 0.00 44.48 3.86
268 269 9.883142 ACATTCCAAAGTTTCATTGTTTTCTTA 57.117 25.926 0.00 0.00 0.00 2.10
269 270 8.667463 CACATTCCAAAGTTTCATTGTTTTCTT 58.333 29.630 0.00 0.00 0.00 2.52
270 271 8.040132 TCACATTCCAAAGTTTCATTGTTTTCT 58.960 29.630 0.00 0.00 0.00 2.52
271 272 8.195617 TCACATTCCAAAGTTTCATTGTTTTC 57.804 30.769 0.00 0.00 0.00 2.29
272 273 8.735692 ATCACATTCCAAAGTTTCATTGTTTT 57.264 26.923 0.00 0.00 0.00 2.43
273 274 8.735692 AATCACATTCCAAAGTTTCATTGTTT 57.264 26.923 0.00 0.00 0.00 2.83
274 275 8.735692 AAATCACATTCCAAAGTTTCATTGTT 57.264 26.923 0.00 0.00 0.00 2.83
275 276 8.735692 AAAATCACATTCCAAAGTTTCATTGT 57.264 26.923 0.00 0.00 0.00 2.71
276 277 9.048446 AGAAAATCACATTCCAAAGTTTCATTG 57.952 29.630 0.00 0.00 0.00 2.82
277 278 9.617523 AAGAAAATCACATTCCAAAGTTTCATT 57.382 25.926 0.00 0.00 0.00 2.57
278 279 9.617523 AAAGAAAATCACATTCCAAAGTTTCAT 57.382 25.926 0.00 0.00 0.00 2.57
279 280 9.447157 AAAAGAAAATCACATTCCAAAGTTTCA 57.553 25.926 0.00 0.00 0.00 2.69
282 283 9.447157 TGAAAAAGAAAATCACATTCCAAAGTT 57.553 25.926 0.00 0.00 0.00 2.66
283 284 9.447157 TTGAAAAAGAAAATCACATTCCAAAGT 57.553 25.926 0.00 0.00 0.00 2.66
287 288 9.224267 TGTTTTGAAAAAGAAAATCACATTCCA 57.776 25.926 0.00 0.00 0.00 3.53
290 291 9.540431 CGTTGTTTTGAAAAAGAAAATCACATT 57.460 25.926 0.00 0.00 33.70 2.71
291 292 8.174422 CCGTTGTTTTGAAAAAGAAAATCACAT 58.826 29.630 0.00 0.00 33.70 3.21
292 293 7.385205 TCCGTTGTTTTGAAAAAGAAAATCACA 59.615 29.630 0.00 0.00 33.70 3.58
293 294 7.734554 TCCGTTGTTTTGAAAAAGAAAATCAC 58.265 30.769 0.00 0.00 33.70 3.06
294 295 7.412455 GCTCCGTTGTTTTGAAAAAGAAAATCA 60.412 33.333 0.00 0.00 33.70 2.57
295 296 6.899771 GCTCCGTTGTTTTGAAAAAGAAAATC 59.100 34.615 0.00 0.00 33.70 2.17
296 297 6.593770 AGCTCCGTTGTTTTGAAAAAGAAAAT 59.406 30.769 0.00 0.00 33.70 1.82
297 298 5.929415 AGCTCCGTTGTTTTGAAAAAGAAAA 59.071 32.000 0.00 0.00 33.70 2.29
298 299 5.474825 AGCTCCGTTGTTTTGAAAAAGAAA 58.525 33.333 0.00 0.00 33.70 2.52
299 300 5.066968 AGCTCCGTTGTTTTGAAAAAGAA 57.933 34.783 0.00 0.00 0.00 2.52
300 301 4.439563 GGAGCTCCGTTGTTTTGAAAAAGA 60.440 41.667 19.06 0.00 0.00 2.52
301 302 3.796717 GGAGCTCCGTTGTTTTGAAAAAG 59.203 43.478 19.06 0.00 0.00 2.27
302 303 3.193691 TGGAGCTCCGTTGTTTTGAAAAA 59.806 39.130 27.43 1.64 39.43 1.94
303 304 2.755655 TGGAGCTCCGTTGTTTTGAAAA 59.244 40.909 27.43 2.12 39.43 2.29
304 305 2.357637 CTGGAGCTCCGTTGTTTTGAAA 59.642 45.455 27.43 4.55 39.43 2.69
305 306 1.946768 CTGGAGCTCCGTTGTTTTGAA 59.053 47.619 27.43 5.09 39.43 2.69
306 307 1.593196 CTGGAGCTCCGTTGTTTTGA 58.407 50.000 27.43 5.86 39.43 2.69
307 308 0.040067 GCTGGAGCTCCGTTGTTTTG 60.040 55.000 27.43 10.56 39.43 2.44
308 309 0.465460 TGCTGGAGCTCCGTTGTTTT 60.465 50.000 27.43 0.00 42.66 2.43
309 310 1.148273 TGCTGGAGCTCCGTTGTTT 59.852 52.632 27.43 0.00 42.66 2.83
310 311 1.598130 GTGCTGGAGCTCCGTTGTT 60.598 57.895 27.43 0.00 42.66 2.83
311 312 2.031163 GTGCTGGAGCTCCGTTGT 59.969 61.111 27.43 0.00 42.66 3.32
312 313 2.743928 GGTGCTGGAGCTCCGTTG 60.744 66.667 27.43 19.85 43.57 4.10
317 318 0.595095 CAAGTTTGGTGCTGGAGCTC 59.405 55.000 4.71 4.71 42.66 4.09
318 319 0.106519 ACAAGTTTGGTGCTGGAGCT 60.107 50.000 0.00 0.00 42.66 4.09
319 320 0.746659 AACAAGTTTGGTGCTGGAGC 59.253 50.000 0.00 0.00 42.50 4.70
320 321 3.131046 AGAAAACAAGTTTGGTGCTGGAG 59.869 43.478 0.00 0.00 32.36 3.86
321 322 3.096092 AGAAAACAAGTTTGGTGCTGGA 58.904 40.909 0.00 0.00 32.36 3.86
322 323 3.525268 AGAAAACAAGTTTGGTGCTGG 57.475 42.857 0.00 0.00 32.36 4.85
323 324 7.538303 AATTTAGAAAACAAGTTTGGTGCTG 57.462 32.000 0.00 0.00 32.36 4.41
324 325 8.560355 AAAATTTAGAAAACAAGTTTGGTGCT 57.440 26.923 0.00 0.00 32.36 4.40
347 348 9.959775 CTTTTTGTTTTTGCGTAAGACATAAAA 57.040 25.926 15.00 14.92 43.02 1.52
348 349 9.141400 ACTTTTTGTTTTTGCGTAAGACATAAA 57.859 25.926 14.14 14.14 43.02 1.40
349 350 8.690680 ACTTTTTGTTTTTGCGTAAGACATAA 57.309 26.923 5.62 5.08 43.02 1.90
350 351 8.690680 AACTTTTTGTTTTTGCGTAAGACATA 57.309 26.923 5.62 0.02 35.36 2.29
351 352 7.589574 AACTTTTTGTTTTTGCGTAAGACAT 57.410 28.000 5.62 0.00 35.36 3.06
352 353 7.808856 ACTAACTTTTTGTTTTTGCGTAAGACA 59.191 29.630 1.49 1.49 39.89 3.41
353 354 8.099704 CACTAACTTTTTGTTTTTGCGTAAGAC 58.900 33.333 0.00 0.00 39.89 3.01
354 355 7.201367 GCACTAACTTTTTGTTTTTGCGTAAGA 60.201 33.333 0.00 0.00 39.89 2.10
355 356 6.892430 GCACTAACTTTTTGTTTTTGCGTAAG 59.108 34.615 0.00 0.00 39.89 2.34
356 357 6.183360 GGCACTAACTTTTTGTTTTTGCGTAA 60.183 34.615 0.00 0.00 41.89 3.18
357 358 5.288952 GGCACTAACTTTTTGTTTTTGCGTA 59.711 36.000 0.00 0.00 41.89 4.42
358 359 4.092237 GGCACTAACTTTTTGTTTTTGCGT 59.908 37.500 0.00 0.00 41.89 5.24
359 360 4.328712 AGGCACTAACTTTTTGTTTTTGCG 59.671 37.500 0.00 0.00 41.89 4.85
360 361 5.794687 AGGCACTAACTTTTTGTTTTTGC 57.205 34.783 0.00 0.00 41.04 3.68
361 362 8.286097 TCAAAAGGCACTAACTTTTTGTTTTTG 58.714 29.630 10.39 0.00 43.49 2.44
362 363 8.384607 TCAAAAGGCACTAACTTTTTGTTTTT 57.615 26.923 10.39 0.00 43.49 1.94
363 364 7.971183 TCAAAAGGCACTAACTTTTTGTTTT 57.029 28.000 10.39 0.00 43.49 2.43
364 365 9.093970 GTATCAAAAGGCACTAACTTTTTGTTT 57.906 29.630 10.39 4.53 43.49 2.83
365 366 8.254508 TGTATCAAAAGGCACTAACTTTTTGTT 58.745 29.630 10.39 6.32 43.49 2.83
366 367 7.777095 TGTATCAAAAGGCACTAACTTTTTGT 58.223 30.769 10.39 3.44 43.49 2.83
367 368 8.641499 TTGTATCAAAAGGCACTAACTTTTTG 57.359 30.769 5.74 5.74 43.49 2.44
368 369 8.691797 TCTTGTATCAAAAGGCACTAACTTTTT 58.308 29.630 0.00 0.00 43.49 1.94
369 370 8.232913 TCTTGTATCAAAAGGCACTAACTTTT 57.767 30.769 0.00 0.00 46.01 2.27
370 371 7.040409 CCTCTTGTATCAAAAGGCACTAACTTT 60.040 37.037 0.00 0.00 38.49 2.66
371 372 6.431234 CCTCTTGTATCAAAAGGCACTAACTT 59.569 38.462 0.00 0.00 38.49 2.66
372 373 5.940470 CCTCTTGTATCAAAAGGCACTAACT 59.060 40.000 0.00 0.00 38.49 2.24
373 374 6.183309 CCTCTTGTATCAAAAGGCACTAAC 57.817 41.667 0.00 0.00 38.49 2.34
380 381 5.665916 AAATGGCCTCTTGTATCAAAAGG 57.334 39.130 3.32 0.00 0.00 3.11
381 382 5.801947 CGAAAATGGCCTCTTGTATCAAAAG 59.198 40.000 3.32 0.00 0.00 2.27
382 383 5.242838 ACGAAAATGGCCTCTTGTATCAAAA 59.757 36.000 3.32 0.00 0.00 2.44
383 384 4.764823 ACGAAAATGGCCTCTTGTATCAAA 59.235 37.500 3.32 0.00 0.00 2.69
384 385 4.331968 ACGAAAATGGCCTCTTGTATCAA 58.668 39.130 3.32 0.00 0.00 2.57
385 386 3.950397 ACGAAAATGGCCTCTTGTATCA 58.050 40.909 3.32 0.00 0.00 2.15
386 387 4.965119 AACGAAAATGGCCTCTTGTATC 57.035 40.909 3.32 0.00 0.00 2.24
387 388 5.497474 ACTAACGAAAATGGCCTCTTGTAT 58.503 37.500 3.32 0.00 0.00 2.29
388 389 4.901868 ACTAACGAAAATGGCCTCTTGTA 58.098 39.130 3.32 0.00 0.00 2.41
389 390 3.751518 ACTAACGAAAATGGCCTCTTGT 58.248 40.909 3.32 0.00 0.00 3.16
390 391 3.127030 GGACTAACGAAAATGGCCTCTTG 59.873 47.826 3.32 0.00 0.00 3.02
399 400 7.782049 TGATCATCTACAGGACTAACGAAAAT 58.218 34.615 0.00 0.00 0.00 1.82
553 567 1.218047 GGCGTGGCACTCTGTATCA 59.782 57.895 16.72 0.00 0.00 2.15
572 586 0.745486 TTCTATCGTCGGAGGTCGCA 60.745 55.000 0.00 0.00 39.05 5.10
573 587 0.379669 TTTCTATCGTCGGAGGTCGC 59.620 55.000 0.00 0.00 39.05 5.19
577 591 4.995124 TCTTTTCTTTCTATCGTCGGAGG 58.005 43.478 0.00 0.00 0.00 4.30
578 592 6.454450 GCTTTCTTTTCTTTCTATCGTCGGAG 60.454 42.308 0.00 0.00 0.00 4.63
686 700 3.009714 GGAAGCTCGGGGAGGGTT 61.010 66.667 0.00 0.00 0.00 4.11
750 766 0.393944 TGCTCACGAGGTAGATCGGT 60.394 55.000 0.91 0.00 46.91 4.69
765 781 2.210711 CGGGGGAGGGTAGATGCTC 61.211 68.421 0.00 0.00 0.00 4.26
1221 1246 4.849329 GACGAGCTGTACCGCGGG 62.849 72.222 31.76 12.94 34.40 6.13
1631 1691 1.604378 CTGTCCCTGGTCATCACCC 59.396 63.158 0.00 0.00 42.99 4.61
1764 1824 1.819632 GATGGCGAACGGGAGCATT 60.820 57.895 0.00 0.00 34.54 3.56
1806 1866 3.771160 GGCGACACCATCCTCGGT 61.771 66.667 0.00 0.00 41.07 4.69
1987 2055 4.397832 GGGGCGCCACGAACCTTA 62.398 66.667 30.85 0.00 0.00 2.69
2119 2188 9.020731 TGACAGAACATTATTACTCACTCAGTA 57.979 33.333 0.00 0.00 36.43 2.74
2120 2189 7.896811 TGACAGAACATTATTACTCACTCAGT 58.103 34.615 0.00 0.00 39.41 3.41
2121 2190 8.031864 ACTGACAGAACATTATTACTCACTCAG 58.968 37.037 10.08 0.00 0.00 3.35
2122 2191 7.814587 CACTGACAGAACATTATTACTCACTCA 59.185 37.037 10.08 0.00 0.00 3.41
2123 2192 8.029522 TCACTGACAGAACATTATTACTCACTC 58.970 37.037 10.08 0.00 0.00 3.51
2124 2193 7.896811 TCACTGACAGAACATTATTACTCACT 58.103 34.615 10.08 0.00 0.00 3.41
2125 2194 8.534333 TTCACTGACAGAACATTATTACTCAC 57.466 34.615 10.08 0.00 0.00 3.51
2126 2195 7.331934 GCTTCACTGACAGAACATTATTACTCA 59.668 37.037 10.08 0.00 0.00 3.41
2127 2196 7.463383 CGCTTCACTGACAGAACATTATTACTC 60.463 40.741 10.08 0.00 0.00 2.59
2128 2197 6.311445 CGCTTCACTGACAGAACATTATTACT 59.689 38.462 10.08 0.00 0.00 2.24
2129 2198 6.455646 CCGCTTCACTGACAGAACATTATTAC 60.456 42.308 10.08 0.00 0.00 1.89
2152 2221 0.032952 TCCACGTCCAGAAAGAACCG 59.967 55.000 0.00 0.00 0.00 4.44
2159 2228 3.618997 GCTTAAATCCTCCACGTCCAGAA 60.619 47.826 0.00 0.00 0.00 3.02
2165 2234 1.822990 TCGAGCTTAAATCCTCCACGT 59.177 47.619 0.00 0.00 0.00 4.49
2168 2237 2.604046 GCTCGAGCTTAAATCCTCCA 57.396 50.000 29.88 0.00 38.21 3.86
2253 2341 6.668541 TTGCAAGCAGTTAGAACATCTATC 57.331 37.500 0.00 0.00 0.00 2.08
2255 2343 7.452880 AATTTGCAAGCAGTTAGAACATCTA 57.547 32.000 0.00 0.00 0.00 1.98
2257 2345 7.169645 TGAAAATTTGCAAGCAGTTAGAACATC 59.830 33.333 0.00 0.00 0.00 3.06
2265 2353 7.874016 TCTCATAATGAAAATTTGCAAGCAGTT 59.126 29.630 2.14 0.00 0.00 3.16
2267 2355 7.821595 TCTCATAATGAAAATTTGCAAGCAG 57.178 32.000 2.14 0.00 0.00 4.24
2296 3191 2.813908 GTCGCGGCTTCCACGAAT 60.814 61.111 1.90 0.00 37.60 3.34
2299 3194 4.717629 TCTGTCGCGGCTTCCACG 62.718 66.667 13.81 0.00 0.00 4.94
2305 3200 1.092921 TTTGTTGTTCTGTCGCGGCT 61.093 50.000 13.81 0.00 0.00 5.52
2307 3202 1.462791 GTTTTGTTGTTCTGTCGCGG 58.537 50.000 6.13 0.00 0.00 6.46
2308 3203 1.462791 GGTTTTGTTGTTCTGTCGCG 58.537 50.000 0.00 0.00 0.00 5.87
2310 3205 3.288242 CATCGGTTTTGTTGTTCTGTCG 58.712 45.455 0.00 0.00 0.00 4.35
2315 3210 2.034053 TGGAGCATCGGTTTTGTTGTTC 59.966 45.455 0.00 0.00 34.37 3.18
2318 3213 2.791383 TTGGAGCATCGGTTTTGTTG 57.209 45.000 0.00 0.00 34.37 3.33
2321 3216 3.120580 GCATTTTTGGAGCATCGGTTTTG 60.121 43.478 0.00 0.00 34.37 2.44
2326 3221 1.994779 GTTGCATTTTTGGAGCATCGG 59.005 47.619 0.00 0.00 38.19 4.18
2327 3222 2.950433 AGTTGCATTTTTGGAGCATCG 58.050 42.857 0.00 0.00 38.19 3.84
2369 3264 7.933215 TTTTCATCATGAGATCACATTCAGT 57.067 32.000 2.55 0.00 30.20 3.41
2370 3265 9.803315 AAATTTTCATCATGAGATCACATTCAG 57.197 29.630 2.55 0.00 30.20 3.02
2397 3319 3.462982 ACAGATGTTCTACGTGTTTGCA 58.537 40.909 0.00 0.00 0.00 4.08
2398 3320 3.493129 TGACAGATGTTCTACGTGTTTGC 59.507 43.478 0.00 0.00 0.00 3.68
2399 3321 4.745125 ACTGACAGATGTTCTACGTGTTTG 59.255 41.667 10.08 0.00 0.00 2.93
2465 3387 5.291971 CCTGCTGCAGTAAAATCAGTTTTT 58.708 37.500 26.41 0.00 40.59 1.94
2466 3388 4.797275 GCCTGCTGCAGTAAAATCAGTTTT 60.797 41.667 26.41 0.00 39.31 2.43
2468 3390 2.229784 GCCTGCTGCAGTAAAATCAGTT 59.770 45.455 26.41 0.00 40.77 3.16
2469 3391 1.815003 GCCTGCTGCAGTAAAATCAGT 59.185 47.619 26.41 0.00 40.77 3.41
2471 3393 2.086869 GAGCCTGCTGCAGTAAAATCA 58.913 47.619 26.41 2.24 44.83 2.57
2472 3394 2.086869 TGAGCCTGCTGCAGTAAAATC 58.913 47.619 26.41 16.37 44.83 2.17
2473 3395 2.205022 TGAGCCTGCTGCAGTAAAAT 57.795 45.000 26.41 8.69 44.83 1.82
2474 3396 2.205022 ATGAGCCTGCTGCAGTAAAA 57.795 45.000 26.41 11.18 44.83 1.52
2476 3398 1.814394 CAAATGAGCCTGCTGCAGTAA 59.186 47.619 26.41 10.51 44.83 2.24
2477 3399 1.003464 TCAAATGAGCCTGCTGCAGTA 59.997 47.619 26.41 10.46 44.83 2.74
2478 3400 0.251033 TCAAATGAGCCTGCTGCAGT 60.251 50.000 26.41 10.66 44.83 4.40
2481 3413 0.886563 AACTCAAATGAGCCTGCTGC 59.113 50.000 10.28 0.00 45.79 5.25
2499 3431 9.036980 AGAGAGCTTAGTAATTGTAAGGAAGAA 57.963 33.333 10.02 0.00 0.00 2.52
2502 3434 8.915036 CCTAGAGAGCTTAGTAATTGTAAGGAA 58.085 37.037 10.02 0.00 0.00 3.36
2554 3486 5.047660 GGTGGCACATGGAGTAAATAAACAA 60.048 40.000 20.82 0.00 44.52 2.83
2555 3487 4.461081 GGTGGCACATGGAGTAAATAAACA 59.539 41.667 20.82 0.00 44.52 2.83
2556 3488 4.461081 TGGTGGCACATGGAGTAAATAAAC 59.539 41.667 20.82 0.00 44.52 2.01
2560 3492 2.897271 TGGTGGCACATGGAGTAAAT 57.103 45.000 20.82 0.00 44.52 1.40
2569 3501 4.953940 ACTTTAAACAATGGTGGCACAT 57.046 36.364 20.82 8.29 44.52 3.21
2571 3503 7.541122 TTTAAACTTTAAACAATGGTGGCAC 57.459 32.000 9.70 9.70 0.00 5.01
2727 3660 9.515020 GAAGACAAAATGTGTAAAGTTTGATCA 57.485 29.630 0.00 0.00 41.96 2.92
2742 3675 7.329226 ACAACAGTTTTGACTGAAGACAAAATG 59.671 33.333 18.71 18.00 45.62 2.32
2744 3677 6.640499 CACAACAGTTTTGACTGAAGACAAAA 59.360 34.615 13.98 13.98 43.41 2.44
2749 3682 4.009675 AGCACAACAGTTTTGACTGAAGA 58.990 39.130 13.02 0.00 39.99 2.87
2797 3730 1.272147 GGCAGGTCCACTTTGAGGAAT 60.272 52.381 0.00 0.00 36.80 3.01
2803 3736 2.154462 CTTACAGGCAGGTCCACTTTG 58.846 52.381 0.00 0.00 37.29 2.77
2804 3737 1.073923 CCTTACAGGCAGGTCCACTTT 59.926 52.381 0.00 0.00 37.29 2.66
2807 3740 1.299976 CCCTTACAGGCAGGTCCAC 59.700 63.158 0.00 0.00 37.29 4.02
2814 3747 1.568504 CTACCAGACCCTTACAGGCA 58.431 55.000 0.00 0.00 32.73 4.75
2815 3748 0.831307 CCTACCAGACCCTTACAGGC 59.169 60.000 0.00 0.00 32.73 4.85
2856 3789 3.994392 AGCTTCGCGAGATTGTCTAAAAA 59.006 39.130 9.59 0.00 41.60 1.94
2857 3790 3.585862 AGCTTCGCGAGATTGTCTAAAA 58.414 40.909 9.59 0.00 41.60 1.52
2858 3791 3.232213 AGCTTCGCGAGATTGTCTAAA 57.768 42.857 9.59 0.00 41.60 1.85
2859 3792 2.941453 AGCTTCGCGAGATTGTCTAA 57.059 45.000 9.59 0.00 41.60 2.10
2860 3793 2.941453 AAGCTTCGCGAGATTGTCTA 57.059 45.000 9.59 0.00 41.60 2.59
2861 3794 2.086054 AAAGCTTCGCGAGATTGTCT 57.914 45.000 9.59 0.00 41.60 3.41
2862 3795 2.882742 AAAAGCTTCGCGAGATTGTC 57.117 45.000 9.59 0.00 41.60 3.18
2863 3796 4.946784 AATAAAAGCTTCGCGAGATTGT 57.053 36.364 9.59 6.69 41.60 2.71
2864 3797 6.961554 AGTTAAATAAAAGCTTCGCGAGATTG 59.038 34.615 9.59 2.43 41.60 2.67
2865 3798 7.073342 AGTTAAATAAAAGCTTCGCGAGATT 57.927 32.000 9.59 6.06 41.60 2.40
2866 3799 6.312918 TGAGTTAAATAAAAGCTTCGCGAGAT 59.687 34.615 9.59 0.00 41.60 2.75
2867 3800 5.636121 TGAGTTAAATAAAAGCTTCGCGAGA 59.364 36.000 9.59 0.00 39.20 4.04
2868 3801 5.854157 TGAGTTAAATAAAAGCTTCGCGAG 58.146 37.500 9.59 4.97 0.00 5.03
2869 3802 5.849357 TGAGTTAAATAAAAGCTTCGCGA 57.151 34.783 3.71 3.71 0.00 5.87
2870 3803 6.192863 GTGATGAGTTAAATAAAAGCTTCGCG 59.807 38.462 0.00 0.00 0.00 5.87
2871 3804 7.021196 TGTGATGAGTTAAATAAAAGCTTCGC 58.979 34.615 0.00 0.00 0.00 4.70
2872 3805 8.948853 TTGTGATGAGTTAAATAAAAGCTTCG 57.051 30.769 0.00 0.00 0.00 3.79
2882 3815 8.522830 CCCTGTAAACATTGTGATGAGTTAAAT 58.477 33.333 0.00 0.00 36.73 1.40
2883 3816 7.040062 CCCCTGTAAACATTGTGATGAGTTAAA 60.040 37.037 0.00 0.00 36.73 1.52
2884 3817 6.432783 CCCCTGTAAACATTGTGATGAGTTAA 59.567 38.462 0.00 0.00 36.73 2.01
2885 3818 5.943416 CCCCTGTAAACATTGTGATGAGTTA 59.057 40.000 0.00 0.00 36.73 2.24
2886 3819 4.766891 CCCCTGTAAACATTGTGATGAGTT 59.233 41.667 0.00 0.00 36.73 3.01
2887 3820 4.335416 CCCCTGTAAACATTGTGATGAGT 58.665 43.478 0.00 0.00 36.73 3.41
2888 3821 3.129287 GCCCCTGTAAACATTGTGATGAG 59.871 47.826 0.00 0.00 36.73 2.90
2889 3822 3.088532 GCCCCTGTAAACATTGTGATGA 58.911 45.455 0.00 0.00 36.73 2.92
2890 3823 2.159393 CGCCCCTGTAAACATTGTGATG 60.159 50.000 0.00 0.00 39.25 3.07
2891 3824 2.091541 CGCCCCTGTAAACATTGTGAT 58.908 47.619 0.00 0.00 0.00 3.06
2892 3825 1.072489 TCGCCCCTGTAAACATTGTGA 59.928 47.619 0.00 0.00 0.00 3.58
2893 3826 1.529226 TCGCCCCTGTAAACATTGTG 58.471 50.000 0.00 0.00 0.00 3.33
2894 3827 2.279935 TTCGCCCCTGTAAACATTGT 57.720 45.000 0.00 0.00 0.00 2.71
2895 3828 2.817258 TCTTTCGCCCCTGTAAACATTG 59.183 45.455 0.00 0.00 0.00 2.82
2896 3829 3.149005 TCTTTCGCCCCTGTAAACATT 57.851 42.857 0.00 0.00 0.00 2.71
2897 3830 2.871096 TCTTTCGCCCCTGTAAACAT 57.129 45.000 0.00 0.00 0.00 2.71
2898 3831 2.871096 ATCTTTCGCCCCTGTAAACA 57.129 45.000 0.00 0.00 0.00 2.83
2899 3832 3.870274 ACTATCTTTCGCCCCTGTAAAC 58.130 45.455 0.00 0.00 0.00 2.01
2900 3833 4.020039 TGAACTATCTTTCGCCCCTGTAAA 60.020 41.667 0.00 0.00 0.00 2.01
2901 3834 3.516300 TGAACTATCTTTCGCCCCTGTAA 59.484 43.478 0.00 0.00 0.00 2.41
2902 3835 3.101437 TGAACTATCTTTCGCCCCTGTA 58.899 45.455 0.00 0.00 0.00 2.74
2903 3836 1.906574 TGAACTATCTTTCGCCCCTGT 59.093 47.619 0.00 0.00 0.00 4.00
2904 3837 2.280628 GTGAACTATCTTTCGCCCCTG 58.719 52.381 0.00 0.00 31.01 4.45
2905 3838 1.209747 GGTGAACTATCTTTCGCCCCT 59.790 52.381 4.40 0.00 46.45 4.79
2906 3839 1.664873 GGTGAACTATCTTTCGCCCC 58.335 55.000 4.40 0.00 46.45 5.80
2909 3842 2.280628 CCCAGGTGAACTATCTTTCGC 58.719 52.381 0.00 0.00 35.60 4.70
2910 3843 3.611766 ACCCAGGTGAACTATCTTTCG 57.388 47.619 0.00 0.00 0.00 3.46
2911 3844 3.440522 GCAACCCAGGTGAACTATCTTTC 59.559 47.826 0.00 0.00 0.00 2.62
2912 3845 3.421844 GCAACCCAGGTGAACTATCTTT 58.578 45.455 0.00 0.00 0.00 2.52
2913 3846 2.290960 GGCAACCCAGGTGAACTATCTT 60.291 50.000 0.00 0.00 0.00 2.40
2914 3847 1.282157 GGCAACCCAGGTGAACTATCT 59.718 52.381 0.00 0.00 0.00 1.98
2915 3848 1.282157 AGGCAACCCAGGTGAACTATC 59.718 52.381 0.00 0.00 37.17 2.08
2916 3849 1.372501 AGGCAACCCAGGTGAACTAT 58.627 50.000 0.00 0.00 37.17 2.12
2917 3850 2.032965 TAGGCAACCCAGGTGAACTA 57.967 50.000 0.00 0.00 37.17 2.24
2918 3851 1.145571 TTAGGCAACCCAGGTGAACT 58.854 50.000 0.00 0.00 37.17 3.01
2919 3852 1.244816 GTTAGGCAACCCAGGTGAAC 58.755 55.000 0.00 0.00 37.17 3.18
2920 3853 3.737702 GTTAGGCAACCCAGGTGAA 57.262 52.632 0.00 0.00 37.17 3.18
2929 3862 1.946267 CCGTGTGTGGTTAGGCAAC 59.054 57.895 0.00 0.00 0.00 4.17
2930 3863 1.894756 GCCGTGTGTGGTTAGGCAA 60.895 57.895 0.00 0.00 46.48 4.52
2931 3864 2.281208 GCCGTGTGTGGTTAGGCA 60.281 61.111 0.00 0.00 46.48 4.75
2932 3865 3.419759 CGCCGTGTGTGGTTAGGC 61.420 66.667 0.00 0.00 44.00 3.93
2933 3866 2.740826 CCGCCGTGTGTGGTTAGG 60.741 66.667 0.00 0.00 39.95 2.69
2934 3867 3.419759 GCCGCCGTGTGTGGTTAG 61.420 66.667 0.00 0.00 46.96 2.34
2935 3868 4.992511 GGCCGCCGTGTGTGGTTA 62.993 66.667 0.00 0.00 46.96 2.85
2946 3879 3.365265 CACTTGGAGTTGGCCGCC 61.365 66.667 1.04 1.04 0.00 6.13
2947 3880 2.281484 TCACTTGGAGTTGGCCGC 60.281 61.111 0.00 0.00 0.00 6.53
2948 3881 0.671781 CTCTCACTTGGAGTTGGCCG 60.672 60.000 0.00 0.00 44.40 6.13
2949 3882 0.687354 TCTCTCACTTGGAGTTGGCC 59.313 55.000 0.00 0.00 44.40 5.36
2950 3883 1.943507 GCTCTCTCACTTGGAGTTGGC 60.944 57.143 0.00 0.00 44.40 4.52
2951 3884 1.345741 TGCTCTCTCACTTGGAGTTGG 59.654 52.381 0.00 0.00 44.40 3.77
2952 3885 2.827800 TGCTCTCTCACTTGGAGTTG 57.172 50.000 0.00 0.00 44.40 3.16
2953 3886 2.614987 GCATGCTCTCTCACTTGGAGTT 60.615 50.000 11.37 0.00 44.40 3.01
2954 3887 1.066286 GCATGCTCTCTCACTTGGAGT 60.066 52.381 11.37 0.00 44.40 3.85
2955 3888 1.207570 AGCATGCTCTCTCACTTGGAG 59.792 52.381 16.30 0.00 45.49 3.86
2956 3889 1.273759 AGCATGCTCTCTCACTTGGA 58.726 50.000 16.30 0.00 0.00 3.53
2957 3890 2.008329 GAAGCATGCTCTCTCACTTGG 58.992 52.381 22.93 0.00 0.00 3.61
2958 3891 2.415857 GTGAAGCATGCTCTCTCACTTG 59.584 50.000 30.60 0.00 0.00 3.16
2959 3892 2.302445 AGTGAAGCATGCTCTCTCACTT 59.698 45.455 33.19 22.74 33.82 3.16
2960 3893 1.901159 AGTGAAGCATGCTCTCTCACT 59.099 47.619 33.19 33.19 32.87 3.41
2961 3894 2.383368 AGTGAAGCATGCTCTCTCAC 57.617 50.000 30.71 30.71 0.00 3.51
2962 3895 4.541973 TTTAGTGAAGCATGCTCTCTCA 57.458 40.909 22.93 18.40 0.00 3.27
2963 3896 5.353678 ACAATTTAGTGAAGCATGCTCTCTC 59.646 40.000 22.93 15.77 0.00 3.20
2964 3897 5.123502 CACAATTTAGTGAAGCATGCTCTCT 59.876 40.000 22.93 20.03 42.05 3.10
2965 3898 5.122869 TCACAATTTAGTGAAGCATGCTCTC 59.877 40.000 22.93 19.62 44.92 3.20
2966 3899 5.005740 TCACAATTTAGTGAAGCATGCTCT 58.994 37.500 22.93 16.41 44.92 4.09
2967 3900 5.300969 TCACAATTTAGTGAAGCATGCTC 57.699 39.130 22.93 14.85 44.92 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.