Multiple sequence alignment - TraesCS4A01G403200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G403200 chr4A 100.000 2528 0 0 1 2528 676780760 676783287 0.000000e+00 4669.0
1 TraesCS4A01G403200 chr4A 95.967 719 27 2 1810 2528 676789733 676790449 0.000000e+00 1166.0
2 TraesCS4A01G403200 chr4A 80.991 747 105 20 950 1665 25786111 25785371 2.200000e-155 558.0
3 TraesCS4A01G403200 chr4A 80.851 611 90 15 929 1521 25700690 25700089 2.960000e-124 455.0
4 TraesCS4A01G403200 chr7B 96.648 716 24 0 1812 2527 103870590 103871305 0.000000e+00 1190.0
5 TraesCS4A01G403200 chr7B 96.229 716 27 0 1811 2526 358598947 358598232 0.000000e+00 1173.0
6 TraesCS4A01G403200 chr6B 96.374 717 26 0 1812 2528 7593045 7592329 0.000000e+00 1181.0
7 TraesCS4A01G403200 chr6B 95.816 717 30 0 1812 2528 7597758 7597042 0.000000e+00 1158.0
8 TraesCS4A01G403200 chr3B 96.106 719 27 1 1810 2528 256260818 256261535 0.000000e+00 1171.0
9 TraesCS4A01G403200 chr3B 96.100 718 27 1 1811 2528 509461825 509462541 0.000000e+00 1170.0
10 TraesCS4A01G403200 chr3B 95.822 718 30 0 1811 2528 256255430 256256147 0.000000e+00 1160.0
11 TraesCS4A01G403200 chr3B 87.222 180 20 3 87 266 826656750 826656574 4.260000e-48 202.0
12 TraesCS4A01G403200 chr1B 95.828 719 30 0 1810 2528 340975924 340976642 0.000000e+00 1162.0
13 TraesCS4A01G403200 chr1B 86.538 156 19 2 102 256 299972366 299972212 1.200000e-38 171.0
14 TraesCS4A01G403200 chr7D 91.207 580 45 3 948 1521 58925511 58924932 0.000000e+00 784.0
15 TraesCS4A01G403200 chr7D 82.278 395 60 6 80 471 58926311 58925924 1.450000e-87 333.0
16 TraesCS4A01G403200 chr7D 86.777 121 13 3 87 205 464273902 464274021 5.670000e-27 132.0
17 TraesCS4A01G403200 chr4B 82.055 730 102 13 950 1659 548120664 548121384 1.670000e-166 595.0
18 TraesCS4A01G403200 chr4B 90.741 54 5 0 3 56 413189962 413189909 3.490000e-09 73.1
19 TraesCS4A01G403200 chr4D 81.501 746 98 22 948 1659 441653045 441653784 6.060000e-161 577.0
20 TraesCS4A01G403200 chr4D 80.915 765 106 21 929 1659 441809838 441810596 3.650000e-158 568.0
21 TraesCS4A01G403200 chr4D 81.611 571 88 10 949 1509 441836899 441837462 8.240000e-125 457.0
22 TraesCS4A01G403200 chr4D 87.845 181 19 1 82 262 88050647 88050824 2.550000e-50 209.0
23 TraesCS4A01G403200 chr1D 87.151 179 22 1 87 265 332568326 332568149 4.260000e-48 202.0
24 TraesCS4A01G403200 chr2B 85.484 186 27 0 81 266 493640580 493640765 7.140000e-46 195.0
25 TraesCS4A01G403200 chr5D 87.805 164 20 0 99 262 437601833 437601996 2.570000e-45 193.0
26 TraesCS4A01G403200 chr2A 85.876 177 24 1 87 262 384977734 384977558 1.190000e-43 187.0
27 TraesCS4A01G403200 chr2D 84.239 184 27 1 81 262 420980016 420980199 7.190000e-41 178.0
28 TraesCS4A01G403200 chr2D 79.297 256 47 5 1069 1322 621125511 621125260 9.300000e-40 174.0
29 TraesCS4A01G403200 chr2D 83.019 159 25 1 99 257 612980449 612980605 2.620000e-30 143.0
30 TraesCS4A01G403200 chr2D 92.593 54 4 0 3 56 603207483 603207430 7.500000e-11 78.7
31 TraesCS4A01G403200 chr7A 84.066 182 28 1 81 262 183666355 183666535 9.300000e-40 174.0
32 TraesCS4A01G403200 chrUn 76.948 308 62 8 1021 1322 314618384 314618080 1.560000e-37 167.0
33 TraesCS4A01G403200 chr3D 86.792 106 14 0 152 257 79626191 79626296 4.420000e-23 119.0
34 TraesCS4A01G403200 chr3D 90.000 50 5 0 4 53 32461559 32461510 5.840000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G403200 chr4A 676780760 676783287 2527 False 4669.0 4669 100.0000 1 2528 1 chr4A.!!$F1 2527
1 TraesCS4A01G403200 chr4A 676789733 676790449 716 False 1166.0 1166 95.9670 1810 2528 1 chr4A.!!$F2 718
2 TraesCS4A01G403200 chr4A 25785371 25786111 740 True 558.0 558 80.9910 950 1665 1 chr4A.!!$R2 715
3 TraesCS4A01G403200 chr4A 25700089 25700690 601 True 455.0 455 80.8510 929 1521 1 chr4A.!!$R1 592
4 TraesCS4A01G403200 chr7B 103870590 103871305 715 False 1190.0 1190 96.6480 1812 2527 1 chr7B.!!$F1 715
5 TraesCS4A01G403200 chr7B 358598232 358598947 715 True 1173.0 1173 96.2290 1811 2526 1 chr7B.!!$R1 715
6 TraesCS4A01G403200 chr6B 7592329 7597758 5429 True 1169.5 1181 96.0950 1812 2528 2 chr6B.!!$R1 716
7 TraesCS4A01G403200 chr3B 256260818 256261535 717 False 1171.0 1171 96.1060 1810 2528 1 chr3B.!!$F2 718
8 TraesCS4A01G403200 chr3B 509461825 509462541 716 False 1170.0 1170 96.1000 1811 2528 1 chr3B.!!$F3 717
9 TraesCS4A01G403200 chr3B 256255430 256256147 717 False 1160.0 1160 95.8220 1811 2528 1 chr3B.!!$F1 717
10 TraesCS4A01G403200 chr1B 340975924 340976642 718 False 1162.0 1162 95.8280 1810 2528 1 chr1B.!!$F1 718
11 TraesCS4A01G403200 chr7D 58924932 58926311 1379 True 558.5 784 86.7425 80 1521 2 chr7D.!!$R1 1441
12 TraesCS4A01G403200 chr4B 548120664 548121384 720 False 595.0 595 82.0550 950 1659 1 chr4B.!!$F1 709
13 TraesCS4A01G403200 chr4D 441653045 441653784 739 False 577.0 577 81.5010 948 1659 1 chr4D.!!$F2 711
14 TraesCS4A01G403200 chr4D 441809838 441810596 758 False 568.0 568 80.9150 929 1659 1 chr4D.!!$F3 730
15 TraesCS4A01G403200 chr4D 441836899 441837462 563 False 457.0 457 81.6110 949 1509 1 chr4D.!!$F4 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 577 0.033504 AAACAGACACGTGCGGAGAT 59.966 50.0 17.22 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1830 0.116342 TCTAACCCTGCCTCTGACCA 59.884 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.925861 GGCCGCTCCTCCATGCTC 62.926 72.222 0.00 0.00 0.00 4.26
19 20 4.166888 GCCGCTCCTCCATGCTCA 62.167 66.667 0.00 0.00 0.00 4.26
20 21 2.108566 CCGCTCCTCCATGCTCAG 59.891 66.667 0.00 0.00 0.00 3.35
21 22 2.108566 CGCTCCTCCATGCTCAGG 59.891 66.667 0.00 0.00 0.00 3.86
22 23 2.203181 GCTCCTCCATGCTCAGGC 60.203 66.667 0.00 0.00 39.26 4.85
35 36 4.439305 TGCTCAGGCACAATATTTTCAC 57.561 40.909 0.00 0.00 44.28 3.18
36 37 4.081406 TGCTCAGGCACAATATTTTCACT 58.919 39.130 0.00 0.00 44.28 3.41
37 38 4.156556 TGCTCAGGCACAATATTTTCACTC 59.843 41.667 0.00 0.00 44.28 3.51
38 39 4.397417 GCTCAGGCACAATATTTTCACTCT 59.603 41.667 0.00 0.00 38.54 3.24
39 40 5.675575 GCTCAGGCACAATATTTTCACTCTG 60.676 44.000 0.00 0.00 38.54 3.35
40 41 5.559770 TCAGGCACAATATTTTCACTCTGA 58.440 37.500 0.00 0.00 0.00 3.27
41 42 6.003326 TCAGGCACAATATTTTCACTCTGAA 58.997 36.000 0.00 0.00 34.03 3.02
42 43 6.489700 TCAGGCACAATATTTTCACTCTGAAA 59.510 34.615 0.00 0.00 43.84 2.69
43 44 7.177216 TCAGGCACAATATTTTCACTCTGAAAT 59.823 33.333 0.00 0.00 44.75 2.17
44 45 7.816031 CAGGCACAATATTTTCACTCTGAAATT 59.184 33.333 0.00 0.00 44.75 1.82
45 46 7.816031 AGGCACAATATTTTCACTCTGAAATTG 59.184 33.333 0.00 3.87 44.75 2.32
46 47 7.814107 GGCACAATATTTTCACTCTGAAATTGA 59.186 33.333 12.95 0.00 44.75 2.57
47 48 9.195411 GCACAATATTTTCACTCTGAAATTGAA 57.805 29.630 12.95 0.00 44.75 2.69
51 52 9.710900 AATATTTTCACTCTGAAATTGAAACCC 57.289 29.630 7.78 0.00 44.75 4.11
52 53 6.790232 TTTTCACTCTGAAATTGAAACCCT 57.210 33.333 7.78 0.00 44.75 4.34
53 54 7.889873 TTTTCACTCTGAAATTGAAACCCTA 57.110 32.000 7.78 0.00 44.75 3.53
54 55 7.510549 TTTCACTCTGAAATTGAAACCCTAG 57.489 36.000 5.21 0.00 41.02 3.02
55 56 6.433847 TCACTCTGAAATTGAAACCCTAGA 57.566 37.500 0.00 0.00 0.00 2.43
56 57 6.837312 TCACTCTGAAATTGAAACCCTAGAA 58.163 36.000 0.00 0.00 0.00 2.10
57 58 7.461749 TCACTCTGAAATTGAAACCCTAGAAT 58.538 34.615 0.00 0.00 0.00 2.40
58 59 8.602424 TCACTCTGAAATTGAAACCCTAGAATA 58.398 33.333 0.00 0.00 0.00 1.75
59 60 9.231297 CACTCTGAAATTGAAACCCTAGAATAA 57.769 33.333 0.00 0.00 0.00 1.40
60 61 9.807921 ACTCTGAAATTGAAACCCTAGAATAAA 57.192 29.630 0.00 0.00 0.00 1.40
74 75 9.726438 ACCCTAGAATAAATTATTCCTTCATCG 57.274 33.333 18.92 6.28 44.35 3.84
75 76 9.944376 CCCTAGAATAAATTATTCCTTCATCGA 57.056 33.333 18.92 0.00 44.35 3.59
107 108 7.554118 TCAAGGATTTTATCTTCACACTCATCC 59.446 37.037 0.00 0.00 0.00 3.51
109 110 7.278875 AGGATTTTATCTTCACACTCATCCTC 58.721 38.462 0.00 0.00 34.14 3.71
112 113 9.995003 GATTTTATCTTCACACTCATCCTCTAT 57.005 33.333 0.00 0.00 0.00 1.98
129 130 9.171936 CATCCTCTATGATCATGTTGTGCATGG 62.172 44.444 18.72 7.29 44.92 3.66
139 140 3.493028 TGTGCATGGTCACACAAGT 57.507 47.368 2.41 0.00 43.48 3.16
141 142 2.924421 TGTGCATGGTCACACAAGTAA 58.076 42.857 2.41 0.00 43.48 2.24
148 149 5.674569 GCATGGTCACACAAGTAATCATCAC 60.675 44.000 0.00 0.00 0.00 3.06
149 150 4.323417 TGGTCACACAAGTAATCATCACC 58.677 43.478 0.00 0.00 0.00 4.02
150 151 3.370978 GGTCACACAAGTAATCATCACCG 59.629 47.826 0.00 0.00 0.00 4.94
155 156 1.670811 CAAGTAATCATCACCGCCCAC 59.329 52.381 0.00 0.00 0.00 4.61
179 180 4.636249 ACTTCTTAGTGCTCCAAGTTCTG 58.364 43.478 0.00 0.00 31.99 3.02
181 182 2.079925 CTTAGTGCTCCAAGTTCTGGC 58.920 52.381 0.00 0.00 45.98 4.85
184 185 1.073722 TGCTCCAAGTTCTGGCAGG 59.926 57.895 15.73 0.00 45.98 4.85
204 205 2.271800 GACACTGAACGATGTCCCATC 58.728 52.381 0.00 0.00 39.49 3.51
221 222 2.604914 CCATCGAGATTGAAGAACACCG 59.395 50.000 0.00 0.00 0.00 4.94
229 230 2.031258 TGAAGAACACCGAAAGCACA 57.969 45.000 0.00 0.00 0.00 4.57
230 231 2.571212 TGAAGAACACCGAAAGCACAT 58.429 42.857 0.00 0.00 0.00 3.21
277 278 1.338674 TGCTTCGGAGGTATGTGGTTG 60.339 52.381 0.00 0.00 0.00 3.77
278 279 1.338769 GCTTCGGAGGTATGTGGTTGT 60.339 52.381 0.00 0.00 0.00 3.32
282 283 0.988832 GGAGGTATGTGGTTGTGGGA 59.011 55.000 0.00 0.00 0.00 4.37
285 286 0.679960 GGTATGTGGTTGTGGGAGGC 60.680 60.000 0.00 0.00 0.00 4.70
288 289 4.265056 GTGGTTGTGGGAGGCGGT 62.265 66.667 0.00 0.00 0.00 5.68
304 305 2.358737 GTCTGGCCACCGGAACTG 60.359 66.667 9.46 0.00 41.00 3.16
350 352 1.376683 GGTGTGTTGGCTGCCGATA 60.377 57.895 12.67 6.58 0.00 2.92
368 370 4.402829 CGATAGGAGAGAGGAGGAAATGA 58.597 47.826 0.00 0.00 0.00 2.57
369 371 5.016173 CGATAGGAGAGAGGAGGAAATGAT 58.984 45.833 0.00 0.00 0.00 2.45
381 383 2.762327 AGGAAATGATCAATGTGCCACC 59.238 45.455 0.00 0.00 0.00 4.61
382 384 2.496871 GGAAATGATCAATGTGCCACCA 59.503 45.455 0.00 0.00 0.00 4.17
407 409 2.531601 GGGTCGGGGGAAGGACAAA 61.532 63.158 0.00 0.00 34.87 2.83
408 410 1.457165 GGTCGGGGGAAGGACAAAA 59.543 57.895 0.00 0.00 34.87 2.44
411 413 1.228429 CGGGGGAAGGACAAAAGCA 60.228 57.895 0.00 0.00 0.00 3.91
414 416 1.536073 GGGGAAGGACAAAAGCAGGC 61.536 60.000 0.00 0.00 0.00 4.85
420 422 2.591715 ACAAAAGCAGGCGTCGCT 60.592 55.556 18.11 0.54 42.98 4.93
422 424 2.280797 AAAAGCAGGCGTCGCTCA 60.281 55.556 18.11 0.00 39.29 4.26
459 461 2.193536 GCCGACACAAACCCAGCTT 61.194 57.895 0.00 0.00 0.00 3.74
471 473 3.757947 ACCCAGCTTAAATTTAGGCCT 57.242 42.857 24.05 11.78 36.51 5.19
472 474 3.365472 ACCCAGCTTAAATTTAGGCCTG 58.635 45.455 24.05 20.11 36.51 4.85
473 475 3.011257 ACCCAGCTTAAATTTAGGCCTGA 59.989 43.478 24.05 3.42 36.51 3.86
474 476 4.023291 CCCAGCTTAAATTTAGGCCTGAA 58.977 43.478 24.05 15.33 36.51 3.02
475 477 4.466015 CCCAGCTTAAATTTAGGCCTGAAA 59.534 41.667 24.05 12.36 36.51 2.69
476 478 5.129320 CCCAGCTTAAATTTAGGCCTGAAAT 59.871 40.000 24.05 14.09 36.51 2.17
477 479 6.044682 CCAGCTTAAATTTAGGCCTGAAATG 58.955 40.000 24.05 15.94 36.51 2.32
478 480 6.127366 CCAGCTTAAATTTAGGCCTGAAATGA 60.127 38.462 24.05 0.00 36.51 2.57
479 481 6.976925 CAGCTTAAATTTAGGCCTGAAATGAG 59.023 38.462 24.05 13.68 36.51 2.90
480 482 6.665248 AGCTTAAATTTAGGCCTGAAATGAGT 59.335 34.615 24.05 9.04 36.51 3.41
481 483 6.975197 GCTTAAATTTAGGCCTGAAATGAGTC 59.025 38.462 17.99 6.28 30.38 3.36
482 484 7.362920 GCTTAAATTTAGGCCTGAAATGAGTCA 60.363 37.037 17.99 0.00 30.38 3.41
483 485 5.904362 AATTTAGGCCTGAAATGAGTCAC 57.096 39.130 17.99 0.00 0.00 3.67
484 486 2.672961 TAGGCCTGAAATGAGTCACG 57.327 50.000 17.99 0.00 0.00 4.35
485 487 0.674895 AGGCCTGAAATGAGTCACGC 60.675 55.000 3.11 0.00 0.00 5.34
486 488 1.421485 GCCTGAAATGAGTCACGCG 59.579 57.895 3.53 3.53 0.00 6.01
487 489 1.291877 GCCTGAAATGAGTCACGCGT 61.292 55.000 5.58 5.58 0.00 6.01
488 490 1.990799 CCTGAAATGAGTCACGCGTA 58.009 50.000 13.44 0.00 0.00 4.42
489 491 1.920574 CCTGAAATGAGTCACGCGTAG 59.079 52.381 13.44 6.92 0.00 3.51
490 492 2.415491 CCTGAAATGAGTCACGCGTAGA 60.415 50.000 13.44 9.56 0.00 2.59
491 493 2.592194 TGAAATGAGTCACGCGTAGAC 58.408 47.619 24.73 24.73 36.26 2.59
492 494 2.030628 TGAAATGAGTCACGCGTAGACA 60.031 45.455 29.83 20.72 38.46 3.41
518 520 4.170292 ACAAACACTCGTCTATTAGCGT 57.830 40.909 7.18 0.00 0.00 5.07
519 521 5.300969 ACAAACACTCGTCTATTAGCGTA 57.699 39.130 7.18 0.00 0.00 4.42
520 522 5.330295 ACAAACACTCGTCTATTAGCGTAG 58.670 41.667 7.18 6.50 0.00 3.51
521 523 4.548991 AACACTCGTCTATTAGCGTAGG 57.451 45.455 7.18 0.00 0.00 3.18
522 524 2.290093 ACACTCGTCTATTAGCGTAGGC 59.710 50.000 0.00 0.00 40.37 3.93
523 525 2.289820 CACTCGTCTATTAGCGTAGGCA 59.710 50.000 10.48 0.00 43.41 4.75
524 526 3.058155 CACTCGTCTATTAGCGTAGGCAT 60.058 47.826 10.48 0.00 43.41 4.40
525 527 3.058155 ACTCGTCTATTAGCGTAGGCATG 60.058 47.826 10.48 0.00 43.41 4.06
526 528 2.882761 TCGTCTATTAGCGTAGGCATGT 59.117 45.455 10.48 0.00 43.41 3.21
527 529 3.317149 TCGTCTATTAGCGTAGGCATGTT 59.683 43.478 10.48 0.00 43.41 2.71
528 530 3.425525 CGTCTATTAGCGTAGGCATGTTG 59.574 47.826 10.48 0.00 43.41 3.33
529 531 3.741344 GTCTATTAGCGTAGGCATGTTGG 59.259 47.826 10.48 0.00 43.41 3.77
530 532 3.639561 TCTATTAGCGTAGGCATGTTGGA 59.360 43.478 10.48 0.00 43.41 3.53
534 536 0.810031 GCGTAGGCATGTTGGATCGT 60.810 55.000 1.75 0.00 39.62 3.73
542 544 3.488047 GGCATGTTGGATCGTGATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
546 548 4.384940 TGTTGGATCGTGATTTCTGTTCA 58.615 39.130 0.00 0.00 0.00 3.18
550 552 6.573664 TGGATCGTGATTTCTGTTCATTTT 57.426 33.333 0.00 0.00 0.00 1.82
551 553 7.680442 TGGATCGTGATTTCTGTTCATTTTA 57.320 32.000 0.00 0.00 0.00 1.52
554 556 9.573133 GGATCGTGATTTCTGTTCATTTTAATT 57.427 29.630 0.00 0.00 0.00 1.40
567 569 7.971168 TGTTCATTTTAATTCAAACAGACACGT 59.029 29.630 0.00 0.00 0.00 4.49
571 573 0.586319 ATTCAAACAGACACGTGCGG 59.414 50.000 17.22 11.70 0.00 5.69
573 575 0.874175 TCAAACAGACACGTGCGGAG 60.874 55.000 17.22 5.89 0.00 4.63
575 577 0.033504 AAACAGACACGTGCGGAGAT 59.966 50.000 17.22 0.00 0.00 2.75
576 578 0.033504 AACAGACACGTGCGGAGATT 59.966 50.000 17.22 0.00 0.00 2.40
579 581 2.288579 ACAGACACGTGCGGAGATTTTA 60.289 45.455 17.22 0.00 0.00 1.52
602 604 1.302192 GGCGTGTTAGAGTTGCCCA 60.302 57.895 0.00 0.00 39.83 5.36
604 606 0.948678 GCGTGTTAGAGTTGCCCAAA 59.051 50.000 0.00 0.00 0.00 3.28
611 613 0.183492 AGAGTTGCCCAAACAGCAGA 59.817 50.000 0.00 0.00 42.17 4.26
615 617 1.108727 TTGCCCAAACAGCAGAGTGG 61.109 55.000 0.00 0.00 42.17 4.00
623 625 0.957395 ACAGCAGAGTGGAAATGCCG 60.957 55.000 0.00 0.00 40.89 5.69
671 704 1.609061 CCTCACGAGGCATCAACAACT 60.609 52.381 0.00 0.00 42.44 3.16
681 714 2.606308 GCATCAACAACTGCAGGTGAAG 60.606 50.000 37.55 26.54 38.28 3.02
682 715 1.679139 TCAACAACTGCAGGTGAAGG 58.321 50.000 37.55 23.89 0.00 3.46
683 716 1.211703 TCAACAACTGCAGGTGAAGGA 59.788 47.619 37.55 25.62 0.00 3.36
684 717 1.334869 CAACAACTGCAGGTGAAGGAC 59.665 52.381 37.55 0.00 0.00 3.85
692 725 1.913762 AGGTGAAGGACGGACCCAG 60.914 63.158 0.00 0.00 40.05 4.45
707 740 1.840635 ACCCAGCCAAGGTAGAGAATC 59.159 52.381 0.00 0.00 35.24 2.52
719 752 2.848213 GAGAATCTGCGTCGAGTCG 58.152 57.895 6.09 6.09 33.56 4.18
720 753 0.097325 GAGAATCTGCGTCGAGTCGT 59.903 55.000 13.12 0.00 33.56 4.34
721 754 0.097325 AGAATCTGCGTCGAGTCGTC 59.903 55.000 13.12 6.02 33.56 4.20
738 771 1.822613 TCGACCCACTAGCGGCTAG 60.823 63.158 30.27 30.27 39.72 3.42
753 786 3.645268 CTAGCACCAACCCAGCCCC 62.645 68.421 0.00 0.00 0.00 5.80
787 820 1.006832 AATCGCGTATGACCAAGCAC 58.993 50.000 5.77 0.00 0.00 4.40
789 822 1.803922 CGCGTATGACCAAGCACGA 60.804 57.895 0.00 0.00 36.53 4.35
791 824 0.736325 GCGTATGACCAAGCACGAGT 60.736 55.000 0.00 0.00 36.53 4.18
794 827 2.263077 GTATGACCAAGCACGAGTGAG 58.737 52.381 7.50 0.00 0.00 3.51
796 829 1.112916 TGACCAAGCACGAGTGAGGA 61.113 55.000 7.50 0.00 0.00 3.71
797 830 0.389166 GACCAAGCACGAGTGAGGAG 60.389 60.000 7.50 0.00 0.00 3.69
799 832 1.005748 CAAGCACGAGTGAGGAGCA 60.006 57.895 7.50 0.00 0.00 4.26
800 833 0.390866 CAAGCACGAGTGAGGAGCAT 60.391 55.000 7.50 0.00 0.00 3.79
801 834 0.322975 AAGCACGAGTGAGGAGCATT 59.677 50.000 7.50 0.00 0.00 3.56
815 848 3.863681 GCATTGGCTCGTTCAAACA 57.136 47.368 0.00 0.00 36.96 2.83
842 875 4.277476 TGACCAGTCAACACCAAATCTTT 58.723 39.130 0.00 0.00 36.53 2.52
868 905 8.988064 ATAATATACAAATGCCACTCTACGAG 57.012 34.615 0.00 0.00 35.52 4.18
870 907 1.009829 CAAATGCCACTCTACGAGCC 58.990 55.000 0.00 0.00 32.04 4.70
871 908 0.905357 AAATGCCACTCTACGAGCCT 59.095 50.000 0.00 0.00 32.04 4.58
873 910 1.033574 ATGCCACTCTACGAGCCTAC 58.966 55.000 0.00 0.00 32.04 3.18
874 911 1.035932 TGCCACTCTACGAGCCTACC 61.036 60.000 0.00 0.00 32.04 3.18
875 912 2.023318 CCACTCTACGAGCCTACCG 58.977 63.158 0.00 0.00 32.04 4.02
876 913 1.355916 CACTCTACGAGCCTACCGC 59.644 63.158 0.00 0.00 32.04 5.68
877 914 2.178890 ACTCTACGAGCCTACCGCG 61.179 63.158 0.00 0.00 44.76 6.46
898 935 3.499737 GCGCCAACGGACCTCATG 61.500 66.667 0.00 0.00 40.57 3.07
899 936 2.047274 CGCCAACGGACCTCATGT 60.047 61.111 0.00 0.00 34.97 3.21
900 937 2.390599 CGCCAACGGACCTCATGTG 61.391 63.158 0.00 0.00 34.97 3.21
901 938 2.690778 GCCAACGGACCTCATGTGC 61.691 63.158 0.00 0.00 0.00 4.57
902 939 2.040544 CCAACGGACCTCATGTGCC 61.041 63.158 0.00 0.00 30.18 5.01
903 940 2.040544 CAACGGACCTCATGTGCCC 61.041 63.158 0.00 0.00 30.18 5.36
904 941 3.605749 AACGGACCTCATGTGCCCG 62.606 63.158 18.75 18.75 45.09 6.13
905 942 4.082523 CGGACCTCATGTGCCCGT 62.083 66.667 14.62 0.00 35.83 5.28
906 943 2.436646 GGACCTCATGTGCCCGTG 60.437 66.667 0.00 0.00 0.00 4.94
907 944 2.347490 GACCTCATGTGCCCGTGT 59.653 61.111 0.00 0.00 0.00 4.49
908 945 2.032528 ACCTCATGTGCCCGTGTG 59.967 61.111 0.00 0.00 0.00 3.82
909 946 2.032528 CCTCATGTGCCCGTGTGT 59.967 61.111 0.00 0.00 0.00 3.72
910 947 1.295101 CCTCATGTGCCCGTGTGTA 59.705 57.895 0.00 0.00 0.00 2.90
911 948 0.107703 CCTCATGTGCCCGTGTGTAT 60.108 55.000 0.00 0.00 0.00 2.29
912 949 1.138069 CCTCATGTGCCCGTGTGTATA 59.862 52.381 0.00 0.00 0.00 1.47
913 950 2.224281 CCTCATGTGCCCGTGTGTATAT 60.224 50.000 0.00 0.00 0.00 0.86
914 951 3.006430 CCTCATGTGCCCGTGTGTATATA 59.994 47.826 0.00 0.00 0.00 0.86
915 952 4.322725 CCTCATGTGCCCGTGTGTATATAT 60.323 45.833 0.00 0.00 0.00 0.86
916 953 5.105513 CCTCATGTGCCCGTGTGTATATATA 60.106 44.000 0.00 0.00 0.00 0.86
917 954 5.961272 TCATGTGCCCGTGTGTATATATAG 58.039 41.667 0.00 0.00 0.00 1.31
918 955 4.794278 TGTGCCCGTGTGTATATATAGG 57.206 45.455 0.00 0.00 0.00 2.57
919 956 4.154176 TGTGCCCGTGTGTATATATAGGT 58.846 43.478 0.00 0.00 0.00 3.08
920 957 4.219070 TGTGCCCGTGTGTATATATAGGTC 59.781 45.833 0.00 0.00 0.00 3.85
921 958 4.219070 GTGCCCGTGTGTATATATAGGTCA 59.781 45.833 0.00 0.00 0.00 4.02
922 959 5.020795 TGCCCGTGTGTATATATAGGTCAT 58.979 41.667 0.00 0.00 0.00 3.06
923 960 5.105513 TGCCCGTGTGTATATATAGGTCATG 60.106 44.000 0.00 0.00 0.00 3.07
924 961 5.105473 GCCCGTGTGTATATATAGGTCATGT 60.105 44.000 0.00 0.00 0.00 3.21
925 962 6.561614 CCCGTGTGTATATATAGGTCATGTC 58.438 44.000 0.00 0.00 0.00 3.06
926 963 6.405508 CCCGTGTGTATATATAGGTCATGTCC 60.406 46.154 0.03 0.03 0.00 4.02
927 964 6.255950 CGTGTGTATATATAGGTCATGTCCG 58.744 44.000 3.20 0.00 0.00 4.79
963 1009 1.340405 GCAAAGCCTTCCATCTCCTCA 60.340 52.381 0.00 0.00 0.00 3.86
964 1010 2.686118 GCAAAGCCTTCCATCTCCTCAT 60.686 50.000 0.00 0.00 0.00 2.90
991 1043 1.544825 TTCCTCCGTCCAGCTCCAAG 61.545 60.000 0.00 0.00 0.00 3.61
1020 1072 1.227380 GGCCGACATGAAGATCGCT 60.227 57.895 0.00 0.00 37.01 4.93
1205 1266 1.066918 ACAACGTGGTCGAGGTCAC 59.933 57.895 0.00 0.00 40.62 3.67
1284 1345 2.767536 CGATGTTGTCGCCCTCAAT 58.232 52.632 0.00 0.00 44.33 2.57
1337 1398 2.606213 TGACCACTGCATCCCGGA 60.606 61.111 0.73 0.00 0.00 5.14
1441 1508 3.068691 CGAGCAACTCTCCCCCGA 61.069 66.667 0.00 0.00 38.62 5.14
1465 1532 2.759973 CCTCCTCTGCCGCTACCA 60.760 66.667 0.00 0.00 0.00 3.25
1471 1538 4.063967 CTGCCGCTACCACCGTCA 62.064 66.667 0.00 0.00 0.00 4.35
1498 1565 1.377202 GCAGGATTTGGCCTCGTCA 60.377 57.895 3.32 0.00 35.66 4.35
1517 1584 4.514577 CCTACTGGCGGCAGGTCG 62.515 72.222 37.97 25.45 0.00 4.79
1535 1615 4.020751 AGGTCGCATATATTGATCAGCTGT 60.021 41.667 14.67 0.42 0.00 4.40
1536 1616 4.092529 GGTCGCATATATTGATCAGCTGTG 59.907 45.833 14.67 2.00 0.00 3.66
1538 1618 3.999001 CGCATATATTGATCAGCTGTGGT 59.001 43.478 14.67 0.78 0.00 4.16
1541 1621 2.042686 TATTGATCAGCTGTGGTGCC 57.957 50.000 14.67 0.00 0.00 5.01
1595 1686 5.047943 AGCTAGTATCACGGGTGAATACATC 60.048 44.000 5.50 3.79 43.58 3.06
1600 1691 8.645814 AGTATCACGGGTGAATACATCTATTA 57.354 34.615 5.50 0.00 43.58 0.98
1602 1693 9.871238 GTATCACGGGTGAATACATCTATTATT 57.129 33.333 5.50 0.00 43.58 1.40
1633 1724 4.291783 AGCGAGAATGCGATAGTTACTTC 58.708 43.478 0.00 0.00 40.67 3.01
1637 1728 6.032985 GCGAGAATGCGATAGTTACTTCTATG 59.967 42.308 0.00 0.00 39.35 2.23
1646 1737 9.627395 GCGATAGTTACTTCTATGTATCATGTT 57.373 33.333 0.00 0.00 39.35 2.71
1662 1753 9.589111 TGTATCATGTTTAAGCGTAATCTACAA 57.411 29.630 0.59 0.00 0.00 2.41
1665 1756 5.444586 TGTTTAAGCGTAATCTACAAGCG 57.555 39.130 0.00 0.00 0.00 4.68
1669 1760 2.798834 GCGTAATCTACAAGCGCAAA 57.201 45.000 11.47 0.00 46.23 3.68
1670 1761 2.694043 GCGTAATCTACAAGCGCAAAG 58.306 47.619 11.47 0.19 46.23 2.77
1671 1762 2.093783 GCGTAATCTACAAGCGCAAAGT 59.906 45.455 11.47 7.47 46.23 2.66
1672 1763 3.424433 GCGTAATCTACAAGCGCAAAGTT 60.424 43.478 11.47 0.00 46.23 2.66
1673 1764 4.323751 CGTAATCTACAAGCGCAAAGTTC 58.676 43.478 11.47 0.00 0.00 3.01
1674 1765 3.831715 AATCTACAAGCGCAAAGTTCC 57.168 42.857 11.47 0.00 0.00 3.62
1675 1766 2.543777 TCTACAAGCGCAAAGTTCCT 57.456 45.000 11.47 0.00 0.00 3.36
1676 1767 2.846193 TCTACAAGCGCAAAGTTCCTT 58.154 42.857 11.47 0.00 0.00 3.36
1677 1768 3.211045 TCTACAAGCGCAAAGTTCCTTT 58.789 40.909 11.47 0.00 33.58 3.11
1678 1769 2.492019 ACAAGCGCAAAGTTCCTTTC 57.508 45.000 11.47 0.00 30.60 2.62
1679 1770 2.024414 ACAAGCGCAAAGTTCCTTTCT 58.976 42.857 11.47 0.00 30.60 2.52
1680 1771 3.211045 ACAAGCGCAAAGTTCCTTTCTA 58.789 40.909 11.47 0.00 30.60 2.10
1681 1772 3.251004 ACAAGCGCAAAGTTCCTTTCTAG 59.749 43.478 11.47 0.00 30.60 2.43
1682 1773 2.427506 AGCGCAAAGTTCCTTTCTAGG 58.572 47.619 11.47 0.00 43.46 3.02
1683 1774 1.135660 GCGCAAAGTTCCTTTCTAGGC 60.136 52.381 0.30 0.00 41.69 3.93
1684 1775 1.468914 CGCAAAGTTCCTTTCTAGGCC 59.531 52.381 0.00 0.00 41.69 5.19
1685 1776 2.514803 GCAAAGTTCCTTTCTAGGCCA 58.485 47.619 5.01 0.00 41.69 5.36
1686 1777 2.890945 GCAAAGTTCCTTTCTAGGCCAA 59.109 45.455 5.01 0.00 41.69 4.52
1687 1778 3.057245 GCAAAGTTCCTTTCTAGGCCAAG 60.057 47.826 5.01 0.00 41.69 3.61
1688 1779 2.498644 AGTTCCTTTCTAGGCCAAGC 57.501 50.000 5.01 0.00 41.69 4.01
1689 1780 1.988846 AGTTCCTTTCTAGGCCAAGCT 59.011 47.619 5.01 0.00 41.69 3.74
1690 1781 3.182152 AGTTCCTTTCTAGGCCAAGCTA 58.818 45.455 5.01 0.00 41.69 3.32
1691 1782 3.055021 AGTTCCTTTCTAGGCCAAGCTAC 60.055 47.826 5.01 0.64 41.69 3.58
1692 1783 2.546899 TCCTTTCTAGGCCAAGCTACA 58.453 47.619 5.01 0.00 41.69 2.74
1693 1784 2.236395 TCCTTTCTAGGCCAAGCTACAC 59.764 50.000 5.01 0.00 41.69 2.90
1694 1785 2.271800 CTTTCTAGGCCAAGCTACACG 58.728 52.381 5.01 0.00 0.00 4.49
1695 1786 0.535335 TTCTAGGCCAAGCTACACGG 59.465 55.000 5.01 0.00 0.00 4.94
1696 1787 1.521681 CTAGGCCAAGCTACACGGC 60.522 63.158 5.01 7.64 45.47 5.68
1699 1790 3.431725 GCCAAGCTACACGGCACC 61.432 66.667 10.57 0.00 45.52 5.01
1700 1791 2.746277 CCAAGCTACACGGCACCC 60.746 66.667 0.00 0.00 34.17 4.61
1701 1792 2.031919 CAAGCTACACGGCACCCA 59.968 61.111 0.00 0.00 34.17 4.51
1702 1793 2.032071 AAGCTACACGGCACCCAC 59.968 61.111 0.00 0.00 34.17 4.61
1703 1794 2.516888 AAGCTACACGGCACCCACT 61.517 57.895 0.00 0.00 34.17 4.00
1704 1795 1.189524 AAGCTACACGGCACCCACTA 61.190 55.000 0.00 0.00 34.17 2.74
1705 1796 0.976073 AGCTACACGGCACCCACTAT 60.976 55.000 0.00 0.00 34.17 2.12
1706 1797 0.529992 GCTACACGGCACCCACTATC 60.530 60.000 0.00 0.00 0.00 2.08
1707 1798 0.821517 CTACACGGCACCCACTATCA 59.178 55.000 0.00 0.00 0.00 2.15
1708 1799 0.533491 TACACGGCACCCACTATCAC 59.467 55.000 0.00 0.00 0.00 3.06
1709 1800 1.449601 CACGGCACCCACTATCACC 60.450 63.158 0.00 0.00 0.00 4.02
1710 1801 1.916273 ACGGCACCCACTATCACCA 60.916 57.895 0.00 0.00 0.00 4.17
1711 1802 1.271840 ACGGCACCCACTATCACCAT 61.272 55.000 0.00 0.00 0.00 3.55
1712 1803 0.532862 CGGCACCCACTATCACCATC 60.533 60.000 0.00 0.00 0.00 3.51
1713 1804 0.546122 GGCACCCACTATCACCATCA 59.454 55.000 0.00 0.00 0.00 3.07
1714 1805 1.143684 GGCACCCACTATCACCATCAT 59.856 52.381 0.00 0.00 0.00 2.45
1715 1806 2.498167 GCACCCACTATCACCATCATC 58.502 52.381 0.00 0.00 0.00 2.92
1716 1807 2.105477 GCACCCACTATCACCATCATCT 59.895 50.000 0.00 0.00 0.00 2.90
1717 1808 3.736720 CACCCACTATCACCATCATCTG 58.263 50.000 0.00 0.00 0.00 2.90
1718 1809 3.135348 CACCCACTATCACCATCATCTGT 59.865 47.826 0.00 0.00 0.00 3.41
1719 1810 3.782523 ACCCACTATCACCATCATCTGTT 59.217 43.478 0.00 0.00 0.00 3.16
1720 1811 4.141620 ACCCACTATCACCATCATCTGTTC 60.142 45.833 0.00 0.00 0.00 3.18
1721 1812 4.141642 CCCACTATCACCATCATCTGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
1722 1813 4.813161 CCACTATCACCATCATCTGTTCAC 59.187 45.833 0.00 0.00 0.00 3.18
1723 1814 4.505556 CACTATCACCATCATCTGTTCACG 59.494 45.833 0.00 0.00 0.00 4.35
1724 1815 3.616956 ATCACCATCATCTGTTCACGT 57.383 42.857 0.00 0.00 0.00 4.49
1725 1816 2.959516 TCACCATCATCTGTTCACGTC 58.040 47.619 0.00 0.00 0.00 4.34
1726 1817 2.298729 TCACCATCATCTGTTCACGTCA 59.701 45.455 0.00 0.00 0.00 4.35
1727 1818 3.066380 CACCATCATCTGTTCACGTCAA 58.934 45.455 0.00 0.00 0.00 3.18
1728 1819 3.124128 CACCATCATCTGTTCACGTCAAG 59.876 47.826 0.00 0.00 0.00 3.02
1729 1820 3.006859 ACCATCATCTGTTCACGTCAAGA 59.993 43.478 0.00 0.00 0.00 3.02
1730 1821 4.186926 CCATCATCTGTTCACGTCAAGAT 58.813 43.478 0.00 0.00 0.00 2.40
1731 1822 5.105351 ACCATCATCTGTTCACGTCAAGATA 60.105 40.000 0.00 0.00 0.00 1.98
1732 1823 5.987953 CCATCATCTGTTCACGTCAAGATAT 59.012 40.000 0.00 0.00 0.00 1.63
1733 1824 6.073927 CCATCATCTGTTCACGTCAAGATATG 60.074 42.308 0.00 0.00 0.00 1.78
1734 1825 5.965922 TCATCTGTTCACGTCAAGATATGT 58.034 37.500 0.00 0.00 0.00 2.29
1735 1826 5.807011 TCATCTGTTCACGTCAAGATATGTG 59.193 40.000 0.00 0.00 37.66 3.21
1736 1827 3.926527 TCTGTTCACGTCAAGATATGTGC 59.073 43.478 0.00 0.00 36.51 4.57
1737 1828 3.658709 TGTTCACGTCAAGATATGTGCA 58.341 40.909 0.00 0.00 36.51 4.57
1738 1829 3.679502 TGTTCACGTCAAGATATGTGCAG 59.320 43.478 0.00 0.00 36.51 4.41
1739 1830 3.592898 TCACGTCAAGATATGTGCAGT 57.407 42.857 0.00 0.00 36.51 4.40
1740 1831 3.253230 TCACGTCAAGATATGTGCAGTG 58.747 45.455 0.00 0.00 36.51 3.66
1741 1832 2.349580 CACGTCAAGATATGTGCAGTGG 59.650 50.000 0.00 0.00 30.14 4.00
1742 1833 2.028112 ACGTCAAGATATGTGCAGTGGT 60.028 45.455 0.00 0.00 0.00 4.16
1743 1834 2.604914 CGTCAAGATATGTGCAGTGGTC 59.395 50.000 0.00 0.00 0.00 4.02
1744 1835 3.599343 GTCAAGATATGTGCAGTGGTCA 58.401 45.455 0.00 0.00 0.00 4.02
1745 1836 3.620374 GTCAAGATATGTGCAGTGGTCAG 59.380 47.826 0.00 0.00 0.00 3.51
1746 1837 3.515104 TCAAGATATGTGCAGTGGTCAGA 59.485 43.478 0.00 0.00 0.00 3.27
1747 1838 3.815856 AGATATGTGCAGTGGTCAGAG 57.184 47.619 0.00 0.00 0.00 3.35
1748 1839 2.433604 AGATATGTGCAGTGGTCAGAGG 59.566 50.000 0.00 0.00 0.00 3.69
1749 1840 0.250234 TATGTGCAGTGGTCAGAGGC 59.750 55.000 0.00 0.00 0.00 4.70
1750 1841 1.771783 ATGTGCAGTGGTCAGAGGCA 61.772 55.000 0.00 0.00 0.00 4.75
1751 1842 1.670406 GTGCAGTGGTCAGAGGCAG 60.670 63.158 0.00 0.00 34.78 4.85
1752 1843 2.046507 GCAGTGGTCAGAGGCAGG 60.047 66.667 0.00 0.00 0.00 4.85
1753 1844 2.667418 CAGTGGTCAGAGGCAGGG 59.333 66.667 0.00 0.00 0.00 4.45
1754 1845 2.205462 AGTGGTCAGAGGCAGGGT 59.795 61.111 0.00 0.00 0.00 4.34
1755 1846 1.462238 AGTGGTCAGAGGCAGGGTT 60.462 57.895 0.00 0.00 0.00 4.11
1756 1847 0.178903 AGTGGTCAGAGGCAGGGTTA 60.179 55.000 0.00 0.00 0.00 2.85
1757 1848 0.250513 GTGGTCAGAGGCAGGGTTAG 59.749 60.000 0.00 0.00 0.00 2.34
1758 1849 0.116342 TGGTCAGAGGCAGGGTTAGA 59.884 55.000 0.00 0.00 0.00 2.10
1759 1850 0.537653 GGTCAGAGGCAGGGTTAGAC 59.462 60.000 0.00 0.00 0.00 2.59
1760 1851 1.267121 GTCAGAGGCAGGGTTAGACA 58.733 55.000 0.00 0.00 0.00 3.41
1761 1852 1.834263 GTCAGAGGCAGGGTTAGACAT 59.166 52.381 0.00 0.00 0.00 3.06
1762 1853 2.237392 GTCAGAGGCAGGGTTAGACATT 59.763 50.000 0.00 0.00 0.00 2.71
1763 1854 2.912956 TCAGAGGCAGGGTTAGACATTT 59.087 45.455 0.00 0.00 0.00 2.32
1764 1855 4.081087 GTCAGAGGCAGGGTTAGACATTTA 60.081 45.833 0.00 0.00 0.00 1.40
1765 1856 4.162320 TCAGAGGCAGGGTTAGACATTTAG 59.838 45.833 0.00 0.00 0.00 1.85
1766 1857 4.080863 CAGAGGCAGGGTTAGACATTTAGT 60.081 45.833 0.00 0.00 0.00 2.24
1767 1858 5.128827 CAGAGGCAGGGTTAGACATTTAGTA 59.871 44.000 0.00 0.00 0.00 1.82
1768 1859 5.364157 AGAGGCAGGGTTAGACATTTAGTAG 59.636 44.000 0.00 0.00 0.00 2.57
1769 1860 5.278061 AGGCAGGGTTAGACATTTAGTAGA 58.722 41.667 0.00 0.00 0.00 2.59
1770 1861 5.128991 AGGCAGGGTTAGACATTTAGTAGAC 59.871 44.000 0.00 0.00 0.00 2.59
1771 1862 5.128991 GGCAGGGTTAGACATTTAGTAGACT 59.871 44.000 0.00 0.00 0.00 3.24
1772 1863 6.043411 GCAGGGTTAGACATTTAGTAGACTG 58.957 44.000 0.00 0.00 0.00 3.51
1773 1864 6.351117 GCAGGGTTAGACATTTAGTAGACTGT 60.351 42.308 0.00 0.00 0.00 3.55
1774 1865 7.147949 GCAGGGTTAGACATTTAGTAGACTGTA 60.148 40.741 0.00 0.00 0.00 2.74
1775 1866 8.746530 CAGGGTTAGACATTTAGTAGACTGTAA 58.253 37.037 0.00 0.00 0.00 2.41
1776 1867 8.747471 AGGGTTAGACATTTAGTAGACTGTAAC 58.253 37.037 0.00 0.00 0.00 2.50
1777 1868 8.747471 GGGTTAGACATTTAGTAGACTGTAACT 58.253 37.037 0.00 1.51 0.00 2.24
1778 1869 9.570488 GGTTAGACATTTAGTAGACTGTAACTG 57.430 37.037 5.74 0.00 0.00 3.16
1781 1872 8.638629 AGACATTTAGTAGACTGTAACTGTCT 57.361 34.615 17.69 17.69 43.25 3.41
1782 1873 8.732531 AGACATTTAGTAGACTGTAACTGTCTC 58.267 37.037 17.69 4.98 40.76 3.36
1783 1874 8.405418 ACATTTAGTAGACTGTAACTGTCTCA 57.595 34.615 11.05 0.00 40.76 3.27
1784 1875 8.298140 ACATTTAGTAGACTGTAACTGTCTCAC 58.702 37.037 11.05 8.64 40.76 3.51
1785 1876 6.814506 TTAGTAGACTGTAACTGTCTCACC 57.185 41.667 11.05 2.95 40.76 4.02
1786 1877 4.080687 AGTAGACTGTAACTGTCTCACCC 58.919 47.826 11.05 0.94 40.76 4.61
1787 1878 3.246416 AGACTGTAACTGTCTCACCCT 57.754 47.619 2.90 0.00 38.01 4.34
1788 1879 3.158676 AGACTGTAACTGTCTCACCCTC 58.841 50.000 2.90 0.00 38.01 4.30
1789 1880 3.158676 GACTGTAACTGTCTCACCCTCT 58.841 50.000 0.00 0.00 31.22 3.69
1790 1881 3.158676 ACTGTAACTGTCTCACCCTCTC 58.841 50.000 0.00 0.00 0.00 3.20
1791 1882 3.157881 CTGTAACTGTCTCACCCTCTCA 58.842 50.000 0.00 0.00 0.00 3.27
1792 1883 3.157881 TGTAACTGTCTCACCCTCTCAG 58.842 50.000 0.00 0.00 0.00 3.35
1793 1884 0.972883 AACTGTCTCACCCTCTCAGC 59.027 55.000 0.00 0.00 0.00 4.26
1794 1885 0.178950 ACTGTCTCACCCTCTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
1795 1886 0.246086 CTGTCTCACCCTCTCAGCAC 59.754 60.000 0.00 0.00 0.00 4.40
1796 1887 1.214062 GTCTCACCCTCTCAGCACG 59.786 63.158 0.00 0.00 0.00 5.34
1797 1888 1.074951 TCTCACCCTCTCAGCACGA 59.925 57.895 0.00 0.00 0.00 4.35
1798 1889 0.539669 TCTCACCCTCTCAGCACGAA 60.540 55.000 0.00 0.00 0.00 3.85
1799 1890 0.389166 CTCACCCTCTCAGCACGAAC 60.389 60.000 0.00 0.00 0.00 3.95
1800 1891 1.112916 TCACCCTCTCAGCACGAACA 61.113 55.000 0.00 0.00 0.00 3.18
1801 1892 0.668706 CACCCTCTCAGCACGAACAG 60.669 60.000 0.00 0.00 0.00 3.16
1802 1893 1.115930 ACCCTCTCAGCACGAACAGT 61.116 55.000 0.00 0.00 0.00 3.55
1803 1894 0.888619 CCCTCTCAGCACGAACAGTA 59.111 55.000 0.00 0.00 0.00 2.74
1804 1895 1.402984 CCCTCTCAGCACGAACAGTAC 60.403 57.143 0.00 0.00 0.00 2.73
1805 1896 1.542030 CCTCTCAGCACGAACAGTACT 59.458 52.381 0.00 0.00 0.00 2.73
1806 1897 2.747989 CCTCTCAGCACGAACAGTACTA 59.252 50.000 0.00 0.00 0.00 1.82
1807 1898 3.378742 CCTCTCAGCACGAACAGTACTAT 59.621 47.826 0.00 0.00 0.00 2.12
1808 1899 4.142359 CCTCTCAGCACGAACAGTACTATT 60.142 45.833 0.00 0.00 0.00 1.73
1935 6739 4.626081 AAGACAGCAAGCCGGCGT 62.626 61.111 23.20 16.90 39.27 5.68
2234 7038 2.549633 GATTGCATCCACGTCCAAAG 57.450 50.000 0.00 0.00 0.00 2.77
2345 7149 0.682852 AACGACCTCGGATGGAAACA 59.317 50.000 0.00 0.00 45.22 2.83
2476 7280 1.320344 TTCGCGCTACCCATCAGACT 61.320 55.000 5.56 0.00 0.00 3.24
2507 7311 4.700365 GGCGCGCCACTTTTGGTC 62.700 66.667 43.55 13.42 45.98 4.02
2522 7326 0.246360 TGGTCCGTGATAGTGCTGTG 59.754 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.925861 GAGCATGGAGGAGCGGCC 62.926 72.222 0.00 0.00 35.48 6.13
2 3 4.166888 TGAGCATGGAGGAGCGGC 62.167 66.667 0.00 0.00 35.48 6.53
3 4 2.108566 CTGAGCATGGAGGAGCGG 59.891 66.667 0.00 0.00 35.48 5.52
4 5 2.108566 CCTGAGCATGGAGGAGCG 59.891 66.667 0.00 0.00 35.48 5.03
5 6 2.203181 GCCTGAGCATGGAGGAGC 60.203 66.667 0.00 0.00 39.53 4.70
6 7 3.317109 TGCCTGAGCATGGAGGAG 58.683 61.111 0.00 0.00 46.52 3.69
15 16 4.397417 AGAGTGAAAATATTGTGCCTGAGC 59.603 41.667 0.00 0.00 40.48 4.26
16 17 5.645067 TCAGAGTGAAAATATTGTGCCTGAG 59.355 40.000 0.00 0.00 0.00 3.35
17 18 5.559770 TCAGAGTGAAAATATTGTGCCTGA 58.440 37.500 0.00 0.00 0.00 3.86
18 19 5.885230 TCAGAGTGAAAATATTGTGCCTG 57.115 39.130 0.00 0.00 0.00 4.85
19 20 6.899393 TTTCAGAGTGAAAATATTGTGCCT 57.101 33.333 0.00 0.00 42.72 4.75
31 32 6.837312 TCTAGGGTTTCAATTTCAGAGTGAA 58.163 36.000 0.00 0.00 40.29 3.18
32 33 6.433847 TCTAGGGTTTCAATTTCAGAGTGA 57.566 37.500 0.00 0.00 0.00 3.41
33 34 7.693969 ATTCTAGGGTTTCAATTTCAGAGTG 57.306 36.000 0.00 0.00 0.00 3.51
34 35 9.807921 TTTATTCTAGGGTTTCAATTTCAGAGT 57.192 29.630 0.00 0.00 0.00 3.24
48 49 9.726438 CGATGAAGGAATAATTTATTCTAGGGT 57.274 33.333 22.26 10.79 43.15 4.34
49 50 9.944376 TCGATGAAGGAATAATTTATTCTAGGG 57.056 33.333 22.26 10.29 43.15 3.53
60 61 9.610705 CCTTGATGATATCGATGAAGGAATAAT 57.389 33.333 19.24 0.00 33.06 1.28
61 62 8.815912 TCCTTGATGATATCGATGAAGGAATAA 58.184 33.333 21.88 9.22 35.83 1.40
62 63 8.366359 TCCTTGATGATATCGATGAAGGAATA 57.634 34.615 21.88 9.45 35.83 1.75
63 64 7.250032 TCCTTGATGATATCGATGAAGGAAT 57.750 36.000 21.88 0.00 35.83 3.01
64 65 6.670695 TCCTTGATGATATCGATGAAGGAA 57.329 37.500 21.88 12.61 35.83 3.36
65 66 6.864151 ATCCTTGATGATATCGATGAAGGA 57.136 37.500 24.12 24.12 40.12 3.36
66 67 7.918536 AAATCCTTGATGATATCGATGAAGG 57.081 36.000 18.52 18.52 32.75 3.46
77 78 9.118300 GAGTGTGAAGATAAAATCCTTGATGAT 57.882 33.333 0.00 0.00 0.00 2.45
78 79 8.102676 TGAGTGTGAAGATAAAATCCTTGATGA 58.897 33.333 0.00 0.00 0.00 2.92
83 84 7.637511 AGGATGAGTGTGAAGATAAAATCCTT 58.362 34.615 0.00 0.00 38.55 3.36
85 86 7.278875 AGAGGATGAGTGTGAAGATAAAATCC 58.721 38.462 0.00 0.00 32.86 3.01
129 130 3.181520 GCGGTGATGATTACTTGTGTGAC 60.182 47.826 0.00 0.00 0.00 3.67
131 132 2.095853 GGCGGTGATGATTACTTGTGTG 59.904 50.000 0.00 0.00 0.00 3.82
139 140 1.280710 AGTTGTGGGCGGTGATGATTA 59.719 47.619 0.00 0.00 0.00 1.75
141 142 0.038166 AAGTTGTGGGCGGTGATGAT 59.962 50.000 0.00 0.00 0.00 2.45
148 149 1.156736 CACTAAGAAGTTGTGGGCGG 58.843 55.000 0.00 0.00 31.97 6.13
149 150 0.517316 GCACTAAGAAGTTGTGGGCG 59.483 55.000 0.00 0.00 31.97 6.13
150 151 1.807142 GAGCACTAAGAAGTTGTGGGC 59.193 52.381 0.00 0.00 31.97 5.36
155 156 5.049818 CAGAACTTGGAGCACTAAGAAGTTG 60.050 44.000 13.89 3.62 37.07 3.16
179 180 0.320771 ACATCGTTCAGTGTCCTGCC 60.321 55.000 0.00 0.00 38.66 4.85
184 185 3.906660 TGGGACATCGTTCAGTGTC 57.093 52.632 0.00 0.00 43.02 3.67
198 199 3.369471 GGTGTTCTTCAATCTCGATGGGA 60.369 47.826 0.00 0.00 0.00 4.37
200 201 2.604914 CGGTGTTCTTCAATCTCGATGG 59.395 50.000 0.00 0.00 0.00 3.51
204 205 3.423645 GCTTTCGGTGTTCTTCAATCTCG 60.424 47.826 0.00 0.00 0.00 4.04
221 222 4.219288 AGAAAGGATGTGGAATGTGCTTTC 59.781 41.667 9.59 9.59 45.12 2.62
229 230 4.472833 AGAGTGCTAGAAAGGATGTGGAAT 59.527 41.667 0.00 0.00 0.00 3.01
230 231 3.840666 AGAGTGCTAGAAAGGATGTGGAA 59.159 43.478 0.00 0.00 0.00 3.53
262 263 0.392461 CCCACAACCACATACCTCCG 60.392 60.000 0.00 0.00 0.00 4.63
288 289 3.636231 CCAGTTCCGGTGGCCAGA 61.636 66.667 5.11 0.00 0.00 3.86
344 346 0.402504 TCCTCCTCTCTCCTATCGGC 59.597 60.000 0.00 0.00 0.00 5.54
345 347 2.961531 TTCCTCCTCTCTCCTATCGG 57.038 55.000 0.00 0.00 0.00 4.18
350 352 4.277788 TGATCATTTCCTCCTCTCTCCT 57.722 45.455 0.00 0.00 0.00 3.69
360 362 2.762327 GGTGGCACATTGATCATTTCCT 59.238 45.455 20.82 0.00 44.52 3.36
361 363 2.496871 TGGTGGCACATTGATCATTTCC 59.503 45.455 20.82 0.00 44.52 3.13
362 364 3.872511 TGGTGGCACATTGATCATTTC 57.127 42.857 20.82 0.00 44.52 2.17
363 365 3.579586 AGTTGGTGGCACATTGATCATTT 59.420 39.130 20.82 0.00 44.52 2.32
368 370 1.259609 CCAGTTGGTGGCACATTGAT 58.740 50.000 20.82 0.00 44.52 2.57
369 371 2.730990 CCAGTTGGTGGCACATTGA 58.269 52.632 20.82 0.00 44.52 2.57
393 395 1.228429 TGCTTTTGTCCTTCCCCCG 60.228 57.895 0.00 0.00 0.00 5.73
394 396 0.900182 CCTGCTTTTGTCCTTCCCCC 60.900 60.000 0.00 0.00 0.00 5.40
396 398 1.866853 CGCCTGCTTTTGTCCTTCCC 61.867 60.000 0.00 0.00 0.00 3.97
399 401 1.507141 CGACGCCTGCTTTTGTCCTT 61.507 55.000 0.00 0.00 0.00 3.36
400 402 1.961277 CGACGCCTGCTTTTGTCCT 60.961 57.895 0.00 0.00 0.00 3.85
401 403 2.556287 CGACGCCTGCTTTTGTCC 59.444 61.111 0.00 0.00 0.00 4.02
402 404 2.127232 GCGACGCCTGCTTTTGTC 60.127 61.111 9.14 0.00 0.00 3.18
403 405 2.591715 AGCGACGCCTGCTTTTGT 60.592 55.556 17.79 0.00 40.48 2.83
404 406 2.174349 GAGCGACGCCTGCTTTTG 59.826 61.111 17.79 0.00 44.18 2.44
405 407 2.280797 TGAGCGACGCCTGCTTTT 60.281 55.556 17.79 0.00 44.18 2.27
434 436 2.279318 TTTGTGTCGGCGCGTACA 60.279 55.556 8.43 9.14 0.00 2.90
435 437 2.169327 GTTTGTGTCGGCGCGTAC 59.831 61.111 8.43 1.97 0.00 3.67
440 442 4.025401 GCTGGGTTTGTGTCGGCG 62.025 66.667 0.00 0.00 0.00 6.46
444 446 6.156519 CCTAAATTTAAGCTGGGTTTGTGTC 58.843 40.000 0.00 0.00 0.00 3.67
447 449 4.020573 GGCCTAAATTTAAGCTGGGTTTGT 60.021 41.667 16.37 0.00 0.00 2.83
455 457 6.665248 ACTCATTTCAGGCCTAAATTTAAGCT 59.335 34.615 16.37 2.80 0.00 3.74
459 461 6.093495 CGTGACTCATTTCAGGCCTAAATTTA 59.907 38.462 3.98 0.00 0.00 1.40
471 473 2.030628 TGTCTACGCGTGACTCATTTCA 60.031 45.455 28.82 13.79 35.63 2.69
472 474 2.592194 TGTCTACGCGTGACTCATTTC 58.408 47.619 28.82 12.02 35.63 2.17
473 475 2.717580 TGTCTACGCGTGACTCATTT 57.282 45.000 28.82 4.68 35.63 2.32
474 476 2.717580 TTGTCTACGCGTGACTCATT 57.282 45.000 28.82 5.32 35.63 2.57
475 477 2.717580 TTTGTCTACGCGTGACTCAT 57.282 45.000 28.82 5.98 35.63 2.90
476 478 2.495409 TTTTGTCTACGCGTGACTCA 57.505 45.000 28.82 18.37 35.63 3.41
498 500 4.733887 CCTACGCTAATAGACGAGTGTTTG 59.266 45.833 10.15 0.00 37.57 2.93
499 501 4.732938 GCCTACGCTAATAGACGAGTGTTT 60.733 45.833 10.15 0.00 37.57 2.83
502 504 2.289820 TGCCTACGCTAATAGACGAGTG 59.710 50.000 10.15 0.00 35.36 3.51
503 505 2.569059 TGCCTACGCTAATAGACGAGT 58.431 47.619 10.15 0.00 35.36 4.18
507 509 3.741344 CCAACATGCCTACGCTAATAGAC 59.259 47.826 0.00 0.00 35.36 2.59
510 512 4.566004 GATCCAACATGCCTACGCTAATA 58.434 43.478 0.00 0.00 35.36 0.98
511 513 3.403038 GATCCAACATGCCTACGCTAAT 58.597 45.455 0.00 0.00 35.36 1.73
514 516 0.530650 CGATCCAACATGCCTACGCT 60.531 55.000 0.00 0.00 35.36 5.07
518 520 3.558931 AATCACGATCCAACATGCCTA 57.441 42.857 0.00 0.00 0.00 3.93
519 521 2.425143 AATCACGATCCAACATGCCT 57.575 45.000 0.00 0.00 0.00 4.75
520 522 2.684881 AGAAATCACGATCCAACATGCC 59.315 45.455 0.00 0.00 0.00 4.40
521 523 3.127548 ACAGAAATCACGATCCAACATGC 59.872 43.478 0.00 0.00 0.00 4.06
522 524 4.952262 ACAGAAATCACGATCCAACATG 57.048 40.909 0.00 0.00 0.00 3.21
523 525 5.003160 TGAACAGAAATCACGATCCAACAT 58.997 37.500 0.00 0.00 0.00 2.71
524 526 4.384940 TGAACAGAAATCACGATCCAACA 58.615 39.130 0.00 0.00 0.00 3.33
525 527 5.551760 ATGAACAGAAATCACGATCCAAC 57.448 39.130 0.00 0.00 0.00 3.77
526 528 6.573664 AAATGAACAGAAATCACGATCCAA 57.426 33.333 0.00 0.00 0.00 3.53
527 529 6.573664 AAAATGAACAGAAATCACGATCCA 57.426 33.333 0.00 0.00 0.00 3.41
528 530 9.573133 AATTAAAATGAACAGAAATCACGATCC 57.427 29.630 0.00 0.00 0.00 3.36
542 544 8.259194 CACGTGTCTGTTTGAATTAAAATGAAC 58.741 33.333 7.58 0.00 0.00 3.18
546 548 5.398122 CGCACGTGTCTGTTTGAATTAAAAT 59.602 36.000 18.38 0.00 0.00 1.82
550 552 2.222213 CCGCACGTGTCTGTTTGAATTA 59.778 45.455 18.38 0.00 0.00 1.40
551 553 1.002900 CCGCACGTGTCTGTTTGAATT 60.003 47.619 18.38 0.00 0.00 2.17
554 556 0.874175 CTCCGCACGTGTCTGTTTGA 60.874 55.000 18.38 2.94 0.00 2.69
559 561 1.148310 AAAATCTCCGCACGTGTCTG 58.852 50.000 18.38 7.49 0.00 3.51
561 563 1.058695 CGTAAAATCTCCGCACGTGTC 59.941 52.381 18.38 8.63 0.00 3.67
567 569 1.079875 GCCGACGTAAAATCTCCGCA 61.080 55.000 0.00 0.00 0.00 5.69
588 590 1.953686 GCTGTTTGGGCAACTCTAACA 59.046 47.619 0.00 0.00 36.21 2.41
602 604 1.615392 GGCATTTCCACTCTGCTGTTT 59.385 47.619 0.00 0.00 36.18 2.83
604 606 0.957395 CGGCATTTCCACTCTGCTGT 60.957 55.000 0.00 0.00 37.47 4.40
611 613 1.074775 TGGAAGCGGCATTTCCACT 59.925 52.632 17.00 0.00 46.84 4.00
615 617 2.202479 GCGTGGAAGCGGCATTTC 60.202 61.111 1.45 0.00 0.00 2.17
623 625 2.251371 GTGGTTTCGCGTGGAAGC 59.749 61.111 12.26 12.26 35.70 3.86
633 635 0.028902 GGTGCTGTGTTCGTGGTTTC 59.971 55.000 0.00 0.00 0.00 2.78
663 696 1.211703 TCCTTCACCTGCAGTTGTTGA 59.788 47.619 13.81 6.71 0.00 3.18
671 704 2.741092 GTCCGTCCTTCACCTGCA 59.259 61.111 0.00 0.00 0.00 4.41
681 714 4.410400 CCTTGGCTGGGTCCGTCC 62.410 72.222 0.00 0.00 0.00 4.79
682 715 2.240162 CTACCTTGGCTGGGTCCGTC 62.240 65.000 5.33 0.00 38.19 4.79
683 716 2.203877 TACCTTGGCTGGGTCCGT 60.204 61.111 5.33 0.00 38.19 4.69
684 717 1.961180 CTCTACCTTGGCTGGGTCCG 61.961 65.000 5.33 0.35 38.19 4.79
692 725 1.134670 ACGCAGATTCTCTACCTTGGC 60.135 52.381 0.00 0.00 0.00 4.52
713 746 1.714414 CTAGTGGGTCGACGACTCG 59.286 63.158 25.87 11.43 39.09 4.18
714 747 1.428620 GCTAGTGGGTCGACGACTC 59.571 63.158 25.87 23.59 39.09 3.36
715 748 2.396955 CGCTAGTGGGTCGACGACT 61.397 63.158 25.87 19.29 41.36 4.18
716 749 2.099831 CGCTAGTGGGTCGACGAC 59.900 66.667 19.70 19.70 0.00 4.34
717 750 3.129502 CCGCTAGTGGGTCGACGA 61.130 66.667 15.00 0.00 0.00 4.20
718 751 4.849329 GCCGCTAGTGGGTCGACG 62.849 72.222 23.60 0.00 0.00 5.12
719 752 2.061182 CTAGCCGCTAGTGGGTCGAC 62.061 65.000 29.35 7.13 40.88 4.20
720 753 1.822613 CTAGCCGCTAGTGGGTCGA 60.823 63.158 29.35 13.17 40.88 4.20
721 754 2.722487 CTAGCCGCTAGTGGGTCG 59.278 66.667 29.35 19.97 40.88 4.79
765 798 1.189446 GCTTGGTCATACGCGATTACG 59.811 52.381 15.93 0.00 42.93 3.18
766 799 2.034001 GTGCTTGGTCATACGCGATTAC 60.034 50.000 15.93 5.02 0.00 1.89
767 800 2.198406 GTGCTTGGTCATACGCGATTA 58.802 47.619 15.93 0.00 0.00 1.75
768 801 1.006832 GTGCTTGGTCATACGCGATT 58.993 50.000 15.93 0.00 0.00 3.34
769 802 1.145759 CGTGCTTGGTCATACGCGAT 61.146 55.000 15.93 0.00 38.23 4.58
770 803 1.803922 CGTGCTTGGTCATACGCGA 60.804 57.895 15.93 0.00 38.23 5.87
787 820 3.805267 GCCAATGCTCCTCACTCG 58.195 61.111 0.00 0.00 33.53 4.18
797 830 1.268999 TGTGTTTGAACGAGCCAATGC 60.269 47.619 0.00 0.00 37.95 3.56
799 832 2.020720 TGTGTGTTTGAACGAGCCAAT 58.979 42.857 0.00 0.00 0.00 3.16
800 833 1.454201 TGTGTGTTTGAACGAGCCAA 58.546 45.000 0.00 0.00 0.00 4.52
801 834 1.333308 CATGTGTGTTTGAACGAGCCA 59.667 47.619 0.00 0.00 0.00 4.75
815 848 1.211703 TGGTGTTGACTGGTCATGTGT 59.788 47.619 4.19 0.00 39.64 3.72
881 918 3.499737 CATGAGGTCCGTTGGCGC 61.500 66.667 0.00 0.00 36.67 6.53
882 919 2.047274 ACATGAGGTCCGTTGGCG 60.047 61.111 0.00 0.00 37.95 5.69
883 920 2.690778 GCACATGAGGTCCGTTGGC 61.691 63.158 0.00 0.00 0.00 4.52
884 921 2.040544 GGCACATGAGGTCCGTTGG 61.041 63.158 0.00 0.00 0.00 3.77
885 922 2.040544 GGGCACATGAGGTCCGTTG 61.041 63.158 0.00 0.00 0.00 4.10
886 923 2.351276 GGGCACATGAGGTCCGTT 59.649 61.111 0.00 0.00 0.00 4.44
887 924 4.082523 CGGGCACATGAGGTCCGT 62.083 66.667 21.38 0.00 36.38 4.69
888 925 4.082523 ACGGGCACATGAGGTCCG 62.083 66.667 25.71 25.71 45.42 4.79
889 926 2.436646 CACGGGCACATGAGGTCC 60.437 66.667 0.00 0.53 0.00 4.46
890 927 2.034879 CACACGGGCACATGAGGTC 61.035 63.158 0.00 0.00 0.00 3.85
891 928 1.476845 TACACACGGGCACATGAGGT 61.477 55.000 0.00 0.00 0.00 3.85
892 929 0.107703 ATACACACGGGCACATGAGG 60.108 55.000 0.00 0.00 0.00 3.86
893 930 2.595124 TATACACACGGGCACATGAG 57.405 50.000 0.00 0.00 0.00 2.90
894 931 4.882842 ATATATACACACGGGCACATGA 57.117 40.909 0.00 0.00 0.00 3.07
895 932 5.109210 CCTATATATACACACGGGCACATG 58.891 45.833 0.00 0.00 0.00 3.21
896 933 4.775780 ACCTATATATACACACGGGCACAT 59.224 41.667 0.00 0.00 0.00 3.21
897 934 4.154176 ACCTATATATACACACGGGCACA 58.846 43.478 0.00 0.00 0.00 4.57
898 935 4.219070 TGACCTATATATACACACGGGCAC 59.781 45.833 0.38 0.00 0.00 5.01
899 936 4.409187 TGACCTATATATACACACGGGCA 58.591 43.478 0.38 0.38 0.00 5.36
900 937 5.105473 ACATGACCTATATATACACACGGGC 60.105 44.000 0.00 0.00 0.00 6.13
901 938 6.405508 GGACATGACCTATATATACACACGGG 60.406 46.154 6.99 0.00 0.00 5.28
902 939 6.561614 GGACATGACCTATATATACACACGG 58.438 44.000 6.99 0.00 0.00 4.94
903 940 6.255950 CGGACATGACCTATATATACACACG 58.744 44.000 12.42 0.00 0.00 4.49
904 941 6.561614 CCGGACATGACCTATATATACACAC 58.438 44.000 12.42 0.00 0.00 3.82
905 942 5.126545 GCCGGACATGACCTATATATACACA 59.873 44.000 5.05 0.00 0.00 3.72
906 943 5.126545 TGCCGGACATGACCTATATATACAC 59.873 44.000 5.05 0.00 0.00 2.90
907 944 5.265989 TGCCGGACATGACCTATATATACA 58.734 41.667 5.05 0.00 0.00 2.29
908 945 5.847111 TGCCGGACATGACCTATATATAC 57.153 43.478 5.05 0.00 0.00 1.47
909 946 5.128171 GGTTGCCGGACATGACCTATATATA 59.872 44.000 5.05 0.00 0.00 0.86
910 947 4.081087 GGTTGCCGGACATGACCTATATAT 60.081 45.833 5.05 0.00 0.00 0.86
911 948 3.259876 GGTTGCCGGACATGACCTATATA 59.740 47.826 5.05 0.00 0.00 0.86
912 949 2.038557 GGTTGCCGGACATGACCTATAT 59.961 50.000 5.05 0.00 0.00 0.86
913 950 1.414919 GGTTGCCGGACATGACCTATA 59.585 52.381 5.05 0.00 0.00 1.31
914 951 0.180406 GGTTGCCGGACATGACCTAT 59.820 55.000 5.05 0.00 0.00 2.57
915 952 1.600107 GGTTGCCGGACATGACCTA 59.400 57.895 5.05 0.00 0.00 3.08
916 953 2.351276 GGTTGCCGGACATGACCT 59.649 61.111 5.05 0.00 0.00 3.85
917 954 2.750237 GGGTTGCCGGACATGACC 60.750 66.667 5.05 8.38 0.00 4.02
918 955 2.750237 GGGGTTGCCGGACATGAC 60.750 66.667 5.05 0.00 0.00 3.06
919 956 2.550699 GATGGGGTTGCCGGACATGA 62.551 60.000 5.05 0.00 0.00 3.07
920 957 2.044053 ATGGGGTTGCCGGACATG 60.044 61.111 5.05 0.00 0.00 3.21
921 958 2.275418 GATGGGGTTGCCGGACAT 59.725 61.111 5.05 0.00 0.00 3.06
922 959 4.041762 GGATGGGGTTGCCGGACA 62.042 66.667 5.05 0.00 0.00 4.02
923 960 4.815108 GGGATGGGGTTGCCGGAC 62.815 72.222 5.05 0.00 0.00 4.79
963 1009 1.281867 TGGACGGAGGAATGCAAAGAT 59.718 47.619 0.00 0.00 0.00 2.40
964 1010 0.690192 TGGACGGAGGAATGCAAAGA 59.310 50.000 0.00 0.00 0.00 2.52
991 1043 4.776647 GTCGGCCATTGGTTGCGC 62.777 66.667 2.24 0.00 0.00 6.09
1007 1059 2.741228 GCAAGGAGAGCGATCTTCATGT 60.741 50.000 15.03 0.00 0.00 3.21
1184 1245 3.041940 CCTCGACCACGTTGTGCC 61.042 66.667 0.00 0.00 40.69 5.01
1205 1266 3.718210 GAGTCGTAGCCGGCCTTGG 62.718 68.421 26.15 10.69 40.30 3.61
1242 1303 2.614481 GCCGGAGTTGAAGGTGTTGATA 60.614 50.000 5.05 0.00 0.00 2.15
1272 1333 2.359850 GTGGCATTGAGGGCGACA 60.360 61.111 0.00 0.00 39.42 4.35
1517 1584 4.379186 GCACCACAGCTGATCAATATATGC 60.379 45.833 23.35 12.05 0.00 3.14
1573 1664 6.576662 AGATGTATTCACCCGTGATACTAG 57.423 41.667 0.00 0.00 39.64 2.57
1576 1667 9.871238 AATAATAGATGTATTCACCCGTGATAC 57.129 33.333 0.00 4.86 39.64 2.24
1600 1691 6.844696 TCGCATTCTCGCTCTAAAAATAAT 57.155 33.333 0.00 0.00 0.00 1.28
1602 1693 7.145985 ACTATCGCATTCTCGCTCTAAAAATA 58.854 34.615 0.00 0.00 0.00 1.40
1603 1694 5.986135 ACTATCGCATTCTCGCTCTAAAAAT 59.014 36.000 0.00 0.00 0.00 1.82
1643 1734 4.201647 GCGCTTGTAGATTACGCTTAAACA 60.202 41.667 0.00 0.00 45.71 2.83
1651 1742 3.991605 ACTTTGCGCTTGTAGATTACG 57.008 42.857 9.73 0.00 0.00 3.18
1673 1764 2.633488 GTGTAGCTTGGCCTAGAAAGG 58.367 52.381 19.07 0.00 46.76 3.11
1674 1765 2.271800 CGTGTAGCTTGGCCTAGAAAG 58.728 52.381 19.07 7.31 0.00 2.62
1675 1766 1.066430 CCGTGTAGCTTGGCCTAGAAA 60.066 52.381 19.07 1.43 0.00 2.52
1676 1767 0.535335 CCGTGTAGCTTGGCCTAGAA 59.465 55.000 19.07 1.82 0.00 2.10
1677 1768 1.956629 GCCGTGTAGCTTGGCCTAGA 61.957 60.000 19.07 0.00 43.06 2.43
1678 1769 1.521681 GCCGTGTAGCTTGGCCTAG 60.522 63.158 10.15 10.15 43.06 3.02
1679 1770 2.582436 GCCGTGTAGCTTGGCCTA 59.418 61.111 3.32 0.00 43.06 3.93
1683 1774 2.746277 GGGTGCCGTGTAGCTTGG 60.746 66.667 0.00 0.00 0.00 3.61
1684 1775 2.031919 TGGGTGCCGTGTAGCTTG 59.968 61.111 0.00 0.00 0.00 4.01
1685 1776 1.189524 TAGTGGGTGCCGTGTAGCTT 61.190 55.000 0.00 0.00 0.00 3.74
1686 1777 0.976073 ATAGTGGGTGCCGTGTAGCT 60.976 55.000 0.00 0.00 0.00 3.32
1687 1778 0.529992 GATAGTGGGTGCCGTGTAGC 60.530 60.000 0.00 0.00 0.00 3.58
1688 1779 0.821517 TGATAGTGGGTGCCGTGTAG 59.178 55.000 0.00 0.00 0.00 2.74
1689 1780 0.533491 GTGATAGTGGGTGCCGTGTA 59.467 55.000 0.00 0.00 0.00 2.90
1690 1781 1.295423 GTGATAGTGGGTGCCGTGT 59.705 57.895 0.00 0.00 0.00 4.49
1691 1782 1.449601 GGTGATAGTGGGTGCCGTG 60.450 63.158 0.00 0.00 0.00 4.94
1692 1783 1.271840 ATGGTGATAGTGGGTGCCGT 61.272 55.000 0.00 0.00 0.00 5.68
1693 1784 0.532862 GATGGTGATAGTGGGTGCCG 60.533 60.000 0.00 0.00 0.00 5.69
1694 1785 0.546122 TGATGGTGATAGTGGGTGCC 59.454 55.000 0.00 0.00 0.00 5.01
1695 1786 2.105477 AGATGATGGTGATAGTGGGTGC 59.895 50.000 0.00 0.00 0.00 5.01
1696 1787 3.135348 ACAGATGATGGTGATAGTGGGTG 59.865 47.826 0.00 0.00 0.00 4.61
1697 1788 3.387962 ACAGATGATGGTGATAGTGGGT 58.612 45.455 0.00 0.00 0.00 4.51
1698 1789 4.141642 TGAACAGATGATGGTGATAGTGGG 60.142 45.833 0.00 0.00 0.00 4.61
1699 1790 4.813161 GTGAACAGATGATGGTGATAGTGG 59.187 45.833 0.00 0.00 0.00 4.00
1700 1791 4.505556 CGTGAACAGATGATGGTGATAGTG 59.494 45.833 0.00 0.00 0.00 2.74
1701 1792 4.160439 ACGTGAACAGATGATGGTGATAGT 59.840 41.667 0.00 0.00 0.00 2.12
1702 1793 4.686972 ACGTGAACAGATGATGGTGATAG 58.313 43.478 0.00 0.00 0.00 2.08
1703 1794 4.159506 TGACGTGAACAGATGATGGTGATA 59.840 41.667 0.00 0.00 0.00 2.15
1704 1795 3.055891 TGACGTGAACAGATGATGGTGAT 60.056 43.478 0.00 0.00 0.00 3.06
1705 1796 2.298729 TGACGTGAACAGATGATGGTGA 59.701 45.455 0.00 0.00 0.00 4.02
1706 1797 2.687370 TGACGTGAACAGATGATGGTG 58.313 47.619 0.00 0.00 0.00 4.17
1707 1798 3.006859 TCTTGACGTGAACAGATGATGGT 59.993 43.478 0.00 0.00 0.00 3.55
1708 1799 3.588955 TCTTGACGTGAACAGATGATGG 58.411 45.455 0.00 0.00 0.00 3.51
1709 1800 6.478016 ACATATCTTGACGTGAACAGATGATG 59.522 38.462 4.82 5.23 0.00 3.07
1710 1801 6.478016 CACATATCTTGACGTGAACAGATGAT 59.522 38.462 4.82 0.00 0.00 2.45
1711 1802 5.807011 CACATATCTTGACGTGAACAGATGA 59.193 40.000 4.82 0.00 0.00 2.92
1712 1803 5.501413 GCACATATCTTGACGTGAACAGATG 60.501 44.000 0.00 0.00 0.00 2.90
1713 1804 4.568359 GCACATATCTTGACGTGAACAGAT 59.432 41.667 0.00 0.00 0.00 2.90
1714 1805 3.926527 GCACATATCTTGACGTGAACAGA 59.073 43.478 0.00 0.00 0.00 3.41
1715 1806 3.679502 TGCACATATCTTGACGTGAACAG 59.320 43.478 0.00 0.00 0.00 3.16
1716 1807 3.658709 TGCACATATCTTGACGTGAACA 58.341 40.909 0.00 0.00 0.00 3.18
1717 1808 3.679980 ACTGCACATATCTTGACGTGAAC 59.320 43.478 0.00 0.00 0.00 3.18
1718 1809 3.679502 CACTGCACATATCTTGACGTGAA 59.320 43.478 0.00 0.00 0.00 3.18
1719 1810 3.253230 CACTGCACATATCTTGACGTGA 58.747 45.455 0.00 0.00 0.00 4.35
1720 1811 2.349580 CCACTGCACATATCTTGACGTG 59.650 50.000 0.00 0.00 0.00 4.49
1721 1812 2.028112 ACCACTGCACATATCTTGACGT 60.028 45.455 0.00 0.00 0.00 4.34
1722 1813 2.604914 GACCACTGCACATATCTTGACG 59.395 50.000 0.00 0.00 0.00 4.35
1723 1814 3.599343 TGACCACTGCACATATCTTGAC 58.401 45.455 0.00 0.00 0.00 3.18
1724 1815 3.515104 TCTGACCACTGCACATATCTTGA 59.485 43.478 0.00 0.00 0.00 3.02
1725 1816 3.865446 TCTGACCACTGCACATATCTTG 58.135 45.455 0.00 0.00 0.00 3.02
1726 1817 3.118482 CCTCTGACCACTGCACATATCTT 60.118 47.826 0.00 0.00 0.00 2.40
1727 1818 2.433604 CCTCTGACCACTGCACATATCT 59.566 50.000 0.00 0.00 0.00 1.98
1728 1819 2.831333 CCTCTGACCACTGCACATATC 58.169 52.381 0.00 0.00 0.00 1.63
1729 1820 1.134280 GCCTCTGACCACTGCACATAT 60.134 52.381 0.00 0.00 0.00 1.78
1730 1821 0.250234 GCCTCTGACCACTGCACATA 59.750 55.000 0.00 0.00 0.00 2.29
1731 1822 1.002868 GCCTCTGACCACTGCACAT 60.003 57.895 0.00 0.00 0.00 3.21
1732 1823 2.387476 CTGCCTCTGACCACTGCACA 62.387 60.000 0.00 0.00 0.00 4.57
1733 1824 1.670406 CTGCCTCTGACCACTGCAC 60.670 63.158 0.00 0.00 0.00 4.57
1734 1825 2.745698 CTGCCTCTGACCACTGCA 59.254 61.111 0.00 0.00 0.00 4.41
1735 1826 2.046507 CCTGCCTCTGACCACTGC 60.047 66.667 0.00 0.00 0.00 4.40
1736 1827 1.772819 AACCCTGCCTCTGACCACTG 61.773 60.000 0.00 0.00 0.00 3.66
1737 1828 0.178903 TAACCCTGCCTCTGACCACT 60.179 55.000 0.00 0.00 0.00 4.00
1738 1829 0.250513 CTAACCCTGCCTCTGACCAC 59.749 60.000 0.00 0.00 0.00 4.16
1739 1830 0.116342 TCTAACCCTGCCTCTGACCA 59.884 55.000 0.00 0.00 0.00 4.02
1740 1831 0.537653 GTCTAACCCTGCCTCTGACC 59.462 60.000 0.00 0.00 0.00 4.02
1741 1832 1.267121 TGTCTAACCCTGCCTCTGAC 58.733 55.000 0.00 0.00 0.00 3.51
1742 1833 2.254152 ATGTCTAACCCTGCCTCTGA 57.746 50.000 0.00 0.00 0.00 3.27
1743 1834 3.356529 AAATGTCTAACCCTGCCTCTG 57.643 47.619 0.00 0.00 0.00 3.35
1744 1835 4.104831 ACTAAATGTCTAACCCTGCCTCT 58.895 43.478 0.00 0.00 0.00 3.69
1745 1836 4.489306 ACTAAATGTCTAACCCTGCCTC 57.511 45.455 0.00 0.00 0.00 4.70
1746 1837 5.128991 GTCTACTAAATGTCTAACCCTGCCT 59.871 44.000 0.00 0.00 0.00 4.75
1747 1838 5.128991 AGTCTACTAAATGTCTAACCCTGCC 59.871 44.000 0.00 0.00 0.00 4.85
1748 1839 6.043411 CAGTCTACTAAATGTCTAACCCTGC 58.957 44.000 0.00 0.00 0.00 4.85
1749 1840 7.171630 ACAGTCTACTAAATGTCTAACCCTG 57.828 40.000 0.00 0.00 0.00 4.45
1750 1841 8.747471 GTTACAGTCTACTAAATGTCTAACCCT 58.253 37.037 0.00 0.00 0.00 4.34
1751 1842 8.747471 AGTTACAGTCTACTAAATGTCTAACCC 58.253 37.037 0.00 0.00 0.00 4.11
1752 1843 9.570488 CAGTTACAGTCTACTAAATGTCTAACC 57.430 37.037 0.00 0.00 0.00 2.85
1755 1846 9.736414 AGACAGTTACAGTCTACTAAATGTCTA 57.264 33.333 19.42 0.00 44.10 2.59
1756 1847 8.638629 AGACAGTTACAGTCTACTAAATGTCT 57.361 34.615 16.92 16.92 44.10 3.41
1757 1848 8.512956 TGAGACAGTTACAGTCTACTAAATGTC 58.487 37.037 10.33 14.07 45.79 3.06
1758 1849 8.298140 GTGAGACAGTTACAGTCTACTAAATGT 58.702 37.037 10.33 0.00 45.79 2.71
1759 1850 7.755822 GGTGAGACAGTTACAGTCTACTAAATG 59.244 40.741 10.33 0.00 45.79 2.32
1760 1851 7.093858 GGGTGAGACAGTTACAGTCTACTAAAT 60.094 40.741 10.33 0.00 45.79 1.40
1761 1852 6.208204 GGGTGAGACAGTTACAGTCTACTAAA 59.792 42.308 10.33 0.00 45.79 1.85
1762 1853 5.709164 GGGTGAGACAGTTACAGTCTACTAA 59.291 44.000 10.33 0.00 45.79 2.24
1763 1854 5.013913 AGGGTGAGACAGTTACAGTCTACTA 59.986 44.000 10.33 0.00 45.79 1.82
1764 1855 4.080687 GGGTGAGACAGTTACAGTCTACT 58.919 47.826 10.33 0.00 45.79 2.57
1765 1856 4.080687 AGGGTGAGACAGTTACAGTCTAC 58.919 47.826 10.33 8.94 45.79 2.59
1766 1857 4.043059 AGAGGGTGAGACAGTTACAGTCTA 59.957 45.833 10.33 0.00 45.79 2.59
1768 1859 3.158676 AGAGGGTGAGACAGTTACAGTC 58.841 50.000 0.00 0.00 36.26 3.51
1769 1860 3.158676 GAGAGGGTGAGACAGTTACAGT 58.841 50.000 0.00 0.00 0.00 3.55
1770 1861 3.157881 TGAGAGGGTGAGACAGTTACAG 58.842 50.000 0.00 0.00 0.00 2.74
1771 1862 3.157881 CTGAGAGGGTGAGACAGTTACA 58.842 50.000 0.00 0.00 0.00 2.41
1772 1863 2.094442 GCTGAGAGGGTGAGACAGTTAC 60.094 54.545 0.00 0.00 0.00 2.50
1773 1864 2.171840 GCTGAGAGGGTGAGACAGTTA 58.828 52.381 0.00 0.00 0.00 2.24
1774 1865 0.972883 GCTGAGAGGGTGAGACAGTT 59.027 55.000 0.00 0.00 0.00 3.16
1775 1866 0.178950 TGCTGAGAGGGTGAGACAGT 60.179 55.000 0.00 0.00 0.00 3.55
1776 1867 0.246086 GTGCTGAGAGGGTGAGACAG 59.754 60.000 0.00 0.00 0.00 3.51
1777 1868 1.527433 CGTGCTGAGAGGGTGAGACA 61.527 60.000 0.00 0.00 0.00 3.41
1778 1869 1.214062 CGTGCTGAGAGGGTGAGAC 59.786 63.158 0.00 0.00 0.00 3.36
1779 1870 0.539669 TTCGTGCTGAGAGGGTGAGA 60.540 55.000 0.00 0.00 0.00 3.27
1780 1871 0.389166 GTTCGTGCTGAGAGGGTGAG 60.389 60.000 0.00 0.00 0.00 3.51
1781 1872 1.112916 TGTTCGTGCTGAGAGGGTGA 61.113 55.000 0.00 0.00 0.00 4.02
1782 1873 0.668706 CTGTTCGTGCTGAGAGGGTG 60.669 60.000 0.00 0.00 0.00 4.61
1783 1874 1.115930 ACTGTTCGTGCTGAGAGGGT 61.116 55.000 0.00 0.00 0.00 4.34
1784 1875 0.888619 TACTGTTCGTGCTGAGAGGG 59.111 55.000 0.00 0.00 0.00 4.30
1785 1876 1.542030 AGTACTGTTCGTGCTGAGAGG 59.458 52.381 0.00 0.00 37.18 3.69
1786 1877 2.999507 AGTACTGTTCGTGCTGAGAG 57.000 50.000 0.00 0.00 37.18 3.20
1787 1878 5.161358 CAAATAGTACTGTTCGTGCTGAGA 58.839 41.667 5.39 0.00 39.06 3.27
1788 1879 4.923871 ACAAATAGTACTGTTCGTGCTGAG 59.076 41.667 5.39 0.00 39.06 3.35
1789 1880 4.684242 CACAAATAGTACTGTTCGTGCTGA 59.316 41.667 10.05 0.00 39.06 4.26
1790 1881 4.447724 ACACAAATAGTACTGTTCGTGCTG 59.552 41.667 19.73 10.39 39.06 4.41
1791 1882 4.628074 ACACAAATAGTACTGTTCGTGCT 58.372 39.130 19.73 7.68 41.66 4.40
1792 1883 4.985044 ACACAAATAGTACTGTTCGTGC 57.015 40.909 19.73 0.00 0.00 5.34
1793 1884 6.352526 GTCAACACAAATAGTACTGTTCGTG 58.647 40.000 18.60 18.60 0.00 4.35
1794 1885 5.174398 CGTCAACACAAATAGTACTGTTCGT 59.826 40.000 5.39 0.00 0.00 3.85
1795 1886 5.595993 CGTCAACACAAATAGTACTGTTCG 58.404 41.667 5.39 0.00 0.00 3.95
1796 1887 5.176958 AGCGTCAACACAAATAGTACTGTTC 59.823 40.000 5.39 0.00 0.00 3.18
1797 1888 5.050363 CAGCGTCAACACAAATAGTACTGTT 60.050 40.000 5.39 1.49 0.00 3.16
1798 1889 4.447724 CAGCGTCAACACAAATAGTACTGT 59.552 41.667 5.39 0.00 0.00 3.55
1799 1890 4.143115 CCAGCGTCAACACAAATAGTACTG 60.143 45.833 5.39 0.00 0.00 2.74
1800 1891 3.994392 CCAGCGTCAACACAAATAGTACT 59.006 43.478 0.00 0.00 0.00 2.73
1801 1892 3.991773 TCCAGCGTCAACACAAATAGTAC 59.008 43.478 0.00 0.00 0.00 2.73
1802 1893 4.260139 TCCAGCGTCAACACAAATAGTA 57.740 40.909 0.00 0.00 0.00 1.82
1803 1894 3.120321 TCCAGCGTCAACACAAATAGT 57.880 42.857 0.00 0.00 0.00 2.12
1804 1895 3.664276 CGTTCCAGCGTCAACACAAATAG 60.664 47.826 0.00 0.00 0.00 1.73
1805 1896 2.222213 CGTTCCAGCGTCAACACAAATA 59.778 45.455 0.00 0.00 0.00 1.40
1806 1897 1.002900 CGTTCCAGCGTCAACACAAAT 60.003 47.619 0.00 0.00 0.00 2.32
1807 1898 0.375454 CGTTCCAGCGTCAACACAAA 59.625 50.000 0.00 0.00 0.00 2.83
1808 1899 2.010670 CGTTCCAGCGTCAACACAA 58.989 52.632 0.00 0.00 0.00 3.33
1935 6739 0.759812 GGGGTTTCGGGTCCCAAAAA 60.760 55.000 9.12 5.03 45.06 1.94
2220 7024 0.251916 TAGGGCTTTGGACGTGGATG 59.748 55.000 0.00 0.00 0.00 3.51
2223 7027 0.391263 GACTAGGGCTTTGGACGTGG 60.391 60.000 0.00 0.00 0.00 4.94
2234 7038 2.618709 CCAATCCGAATTTGACTAGGGC 59.381 50.000 0.00 0.00 0.00 5.19
2345 7149 2.037641 GGTCAAGATTGCTTTTGGGCTT 59.962 45.455 0.00 0.00 30.14 4.35
2476 7280 4.904590 CGCCCCACCAAACACCCA 62.905 66.667 0.00 0.00 0.00 4.51
2506 7310 1.402325 CGAACACAGCACTATCACGGA 60.402 52.381 0.00 0.00 0.00 4.69
2507 7311 0.992072 CGAACACAGCACTATCACGG 59.008 55.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.