Multiple sequence alignment - TraesCS4A01G402800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G402800 chr4A 100.000 4528 0 0 660 5187 676531333 676526806 0.000000e+00 8362.0
1 TraesCS4A01G402800 chr4A 94.509 692 29 5 3641 4324 676456501 676455811 0.000000e+00 1059.0
2 TraesCS4A01G402800 chr4A 100.000 424 0 0 1 424 676531992 676531569 0.000000e+00 784.0
3 TraesCS4A01G402800 chr4A 92.131 305 16 2 3015 3318 676456804 676456507 1.730000e-114 424.0
4 TraesCS4A01G402800 chr4A 89.764 254 18 4 4089 4334 676362453 676362200 8.380000e-83 318.0
5 TraesCS4A01G402800 chr4A 94.702 151 6 2 2865 3015 676493861 676493713 3.120000e-57 233.0
6 TraesCS4A01G402800 chr4A 93.377 151 7 3 2865 3015 676457046 676456899 2.430000e-53 220.0
7 TraesCS4A01G402800 chr7A 90.067 2668 190 42 660 3304 63707710 63710325 0.000000e+00 3389.0
8 TraesCS4A01G402800 chr7A 88.798 1223 86 28 3015 4217 63578469 63577278 0.000000e+00 1452.0
9 TraesCS4A01G402800 chr7A 94.199 724 36 5 3641 4361 63710345 63711065 0.000000e+00 1099.0
10 TraesCS4A01G402800 chr7A 89.868 681 54 11 3643 4310 63554185 63553507 0.000000e+00 861.0
11 TraesCS4A01G402800 chr7A 83.490 533 67 14 4668 5187 642589630 642590154 1.310000e-130 477.0
12 TraesCS4A01G402800 chr7A 87.028 424 35 10 1 424 63707264 63707667 1.320000e-125 460.0
13 TraesCS4A01G402800 chr7A 92.715 151 7 3 2865 3015 63578710 63578564 1.130000e-51 215.0
14 TraesCS4A01G402800 chr7A 81.373 204 34 3 4398 4600 662397870 662397670 4.160000e-36 163.0
15 TraesCS4A01G402800 chr7D 87.610 2728 180 72 691 3304 59094285 59091602 0.000000e+00 3020.0
16 TraesCS4A01G402800 chr7D 89.518 1183 85 19 3075 4228 58993480 58992308 0.000000e+00 1461.0
17 TraesCS4A01G402800 chr7D 94.498 727 34 3 3641 4362 59091582 59090857 0.000000e+00 1116.0
18 TraesCS4A01G402800 chr7D 86.261 575 64 11 3643 4209 58938018 58937451 1.230000e-170 610.0
19 TraesCS4A01G402800 chr7D 84.061 527 72 10 4668 5185 348188504 348187981 1.000000e-136 497.0
20 TraesCS4A01G402800 chr7D 92.216 334 13 4 12 340 59095037 59094712 1.320000e-125 460.0
21 TraesCS4A01G402800 chr7D 81.550 542 75 11 4668 5187 531111878 531112416 1.730000e-114 424.0
22 TraesCS4A01G402800 chr7D 95.364 151 6 1 2865 3015 58994051 58993902 6.710000e-59 239.0
23 TraesCS4A01G402800 chr7D 96.825 63 2 0 3015 3077 58993802 58993740 7.100000e-19 106.0
24 TraesCS4A01G402800 chr3A 84.146 492 75 3 4668 5158 123902091 123902580 1.690000e-129 473.0
25 TraesCS4A01G402800 chr3D 83.142 522 63 11 4668 5187 61043705 61044203 2.200000e-123 453.0
26 TraesCS4A01G402800 chr3D 86.581 313 30 8 3320 3622 30368890 30369200 8.320000e-88 335.0
27 TraesCS4A01G402800 chr3D 100.000 28 0 0 3821 3848 154754800 154754773 9.000000e-03 52.8
28 TraesCS4A01G402800 chr3D 100.000 28 0 0 3821 3848 369031623 369031596 9.000000e-03 52.8
29 TraesCS4A01G402800 chr2B 82.453 530 78 12 4668 5187 212569371 212568847 2.850000e-122 449.0
30 TraesCS4A01G402800 chr2B 82.143 504 86 4 4686 5187 65868792 65868291 3.710000e-116 429.0
31 TraesCS4A01G402800 chr2B 87.543 289 30 4 3316 3600 403120335 403120049 3.870000e-86 329.0
32 TraesCS4A01G402800 chr2B 81.882 287 42 8 4399 4679 212569692 212569410 3.120000e-57 233.0
33 TraesCS4A01G402800 chr2B 81.435 237 38 6 4955 5187 513813294 513813060 6.860000e-44 189.0
34 TraesCS4A01G402800 chr2A 82.353 544 70 13 4668 5187 14441362 14440821 2.850000e-122 449.0
35 TraesCS4A01G402800 chr3B 81.992 522 82 6 4668 5187 818996172 818995661 2.870000e-117 433.0
36 TraesCS4A01G402800 chr4D 80.917 545 78 18 4668 5187 451301201 451300658 1.740000e-109 407.0
37 TraesCS4A01G402800 chr5B 85.752 379 52 2 4672 5049 641802753 641802376 2.910000e-107 399.0
38 TraesCS4A01G402800 chr5B 87.456 287 25 8 3319 3599 661526293 661526012 2.330000e-83 320.0
39 TraesCS4A01G402800 chr5B 83.243 185 30 1 4433 4617 519455897 519456080 8.930000e-38 169.0
40 TraesCS4A01G402800 chr5B 83.815 173 27 1 5013 5185 423354062 423354233 4.160000e-36 163.0
41 TraesCS4A01G402800 chr5D 85.789 380 49 5 4671 5048 456588269 456587893 1.050000e-106 398.0
42 TraesCS4A01G402800 chr5D 81.855 248 31 9 4443 4679 430167690 430167934 4.100000e-46 196.0
43 TraesCS4A01G402800 chr6A 86.799 303 24 12 3342 3634 578072349 578072053 1.800000e-84 324.0
44 TraesCS4A01G402800 chr6A 79.181 293 47 9 4398 4679 503928465 503928176 1.910000e-44 191.0
45 TraesCS4A01G402800 chr6D 86.755 302 25 9 3342 3634 431316560 431316265 6.480000e-84 322.0
46 TraesCS4A01G402800 chr6D 80.769 286 43 7 4399 4679 57466723 57466445 4.070000e-51 213.0
47 TraesCS4A01G402800 chr6D 100.000 28 0 0 3821 3848 169248727 169248754 9.000000e-03 52.8
48 TraesCS4A01G402800 chr1B 85.231 325 35 8 3319 3634 622600937 622600617 6.480000e-84 322.0
49 TraesCS4A01G402800 chr1B 84.239 184 22 5 5007 5187 513146232 513146053 6.910000e-39 172.0
50 TraesCS4A01G402800 chr1A 84.308 325 32 13 3319 3634 547341633 547341319 3.040000e-77 300.0
51 TraesCS4A01G402800 chr1D 83.451 284 39 6 4399 4677 180248256 180248536 1.850000e-64 257.0
52 TraesCS4A01G402800 chr1D 83.404 235 33 6 4385 4617 180246421 180246651 4.070000e-51 213.0
53 TraesCS4A01G402800 chr2D 77.525 396 69 15 4799 5187 517342664 517342282 2.430000e-53 220.0
54 TraesCS4A01G402800 chr4B 80.420 286 50 4 4399 4679 88399673 88399957 4.070000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G402800 chr4A 676526806 676531992 5186 True 4573.000000 8362 100.000000 1 5187 2 chr4A.!!$R4 5186
1 TraesCS4A01G402800 chr4A 676455811 676457046 1235 True 567.666667 1059 93.339000 2865 4324 3 chr4A.!!$R3 1459
2 TraesCS4A01G402800 chr7A 63707264 63711065 3801 False 1649.333333 3389 90.431333 1 4361 3 chr7A.!!$F2 4360
3 TraesCS4A01G402800 chr7A 63553507 63554185 678 True 861.000000 861 89.868000 3643 4310 1 chr7A.!!$R1 667
4 TraesCS4A01G402800 chr7A 63577278 63578710 1432 True 833.500000 1452 90.756500 2865 4217 2 chr7A.!!$R3 1352
5 TraesCS4A01G402800 chr7A 642589630 642590154 524 False 477.000000 477 83.490000 4668 5187 1 chr7A.!!$F1 519
6 TraesCS4A01G402800 chr7D 59090857 59095037 4180 True 1532.000000 3020 91.441333 12 4362 3 chr7D.!!$R4 4350
7 TraesCS4A01G402800 chr7D 58937451 58938018 567 True 610.000000 610 86.261000 3643 4209 1 chr7D.!!$R1 566
8 TraesCS4A01G402800 chr7D 58992308 58994051 1743 True 602.000000 1461 93.902333 2865 4228 3 chr7D.!!$R3 1363
9 TraesCS4A01G402800 chr7D 348187981 348188504 523 True 497.000000 497 84.061000 4668 5185 1 chr7D.!!$R2 517
10 TraesCS4A01G402800 chr7D 531111878 531112416 538 False 424.000000 424 81.550000 4668 5187 1 chr7D.!!$F1 519
11 TraesCS4A01G402800 chr2B 65868291 65868792 501 True 429.000000 429 82.143000 4686 5187 1 chr2B.!!$R1 501
12 TraesCS4A01G402800 chr2B 212568847 212569692 845 True 341.000000 449 82.167500 4399 5187 2 chr2B.!!$R4 788
13 TraesCS4A01G402800 chr2A 14440821 14441362 541 True 449.000000 449 82.353000 4668 5187 1 chr2A.!!$R1 519
14 TraesCS4A01G402800 chr3B 818995661 818996172 511 True 433.000000 433 81.992000 4668 5187 1 chr3B.!!$R1 519
15 TraesCS4A01G402800 chr4D 451300658 451301201 543 True 407.000000 407 80.917000 4668 5187 1 chr4D.!!$R1 519
16 TraesCS4A01G402800 chr1D 180246421 180248536 2115 False 235.000000 257 83.427500 4385 4677 2 chr1D.!!$F1 292


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 176 0.107945 GATCTGTCTGGTGTGGAGGC 60.108 60.0 0.0 0.0 0.00 4.70 F
1538 1861 0.034476 TTGCTCTGCTCTGGTGTGAG 59.966 55.0 0.0 0.0 37.16 3.51 F
2491 2876 0.111253 CCCAGTCTTGTTTCTGCCCT 59.889 55.0 0.0 0.0 0.00 5.19 F
3534 4346 0.178533 TTTCCCCGACGAAACACTGT 59.821 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 1917 0.955428 GTGGCGGTGAAGCAGATTCA 60.955 55.0 0.00 0.00 45.79 2.57 R
2589 2974 0.792640 ACCACTACGACGTGTACTCG 59.207 55.0 15.29 15.29 37.17 4.18 R
4123 4970 0.390340 GACAGAAGGCTGATGCGACA 60.390 55.0 0.00 0.00 45.17 4.35 R
4733 7467 0.178924 AAGCATCAGCCTGGGGTTTT 60.179 50.0 0.00 0.00 43.56 2.43 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.839262 TTAAATGTTGTAGCAGTGAGACG 57.161 39.130 0.00 0.00 0.00 4.18
44 45 1.168714 GTTCATGGCAACTGAGGTCC 58.831 55.000 0.00 0.00 37.61 4.46
85 86 1.902508 GAGTGACAATGGAGGAGGTCA 59.097 52.381 0.00 0.00 37.89 4.02
141 151 1.151221 TGTGCAGCACAGGGATTGT 59.849 52.632 24.84 0.00 39.62 2.71
151 161 3.127791 ACAGGGATTGTGAGGAGATCT 57.872 47.619 0.00 0.00 38.99 2.75
154 164 3.037549 AGGGATTGTGAGGAGATCTGTC 58.962 50.000 0.00 0.00 0.00 3.51
165 175 1.480137 GAGATCTGTCTGGTGTGGAGG 59.520 57.143 0.00 0.00 33.97 4.30
166 176 0.107945 GATCTGTCTGGTGTGGAGGC 60.108 60.000 0.00 0.00 0.00 4.70
167 177 1.892819 ATCTGTCTGGTGTGGAGGCG 61.893 60.000 0.00 0.00 0.00 5.52
168 178 2.842462 TGTCTGGTGTGGAGGCGT 60.842 61.111 0.00 0.00 0.00 5.68
169 179 2.357517 GTCTGGTGTGGAGGCGTG 60.358 66.667 0.00 0.00 0.00 5.34
170 180 3.625897 TCTGGTGTGGAGGCGTGG 61.626 66.667 0.00 0.00 0.00 4.94
171 181 3.625897 CTGGTGTGGAGGCGTGGA 61.626 66.667 0.00 0.00 0.00 4.02
172 182 3.596066 CTGGTGTGGAGGCGTGGAG 62.596 68.421 0.00 0.00 0.00 3.86
368 378 4.144727 GGAGGGGCGGAGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
381 391 2.212794 GAGGAGACGGGTGAGGAGGA 62.213 65.000 0.00 0.00 0.00 3.71
752 1047 0.808453 CGCCGGTTTACACCATCGAT 60.808 55.000 1.90 0.00 44.53 3.59
758 1053 2.159142 GGTTTACACCATCGATCGGACT 60.159 50.000 16.41 0.00 43.61 3.85
780 1075 1.078426 CCCGGCTACCTTGGTTCTG 60.078 63.158 0.00 0.00 0.00 3.02
1016 1318 0.529833 CGAGCTGCAGAGGAAGAAGA 59.470 55.000 20.43 0.00 0.00 2.87
1020 1322 1.277557 GCTGCAGAGGAAGAAGAGGAA 59.722 52.381 20.43 0.00 0.00 3.36
1021 1323 2.677613 GCTGCAGAGGAAGAAGAGGAAG 60.678 54.545 20.43 0.00 0.00 3.46
1022 1324 2.830923 CTGCAGAGGAAGAAGAGGAAGA 59.169 50.000 8.42 0.00 0.00 2.87
1023 1325 2.830923 TGCAGAGGAAGAAGAGGAAGAG 59.169 50.000 0.00 0.00 0.00 2.85
1024 1326 2.168313 GCAGAGGAAGAAGAGGAAGAGG 59.832 54.545 0.00 0.00 0.00 3.69
1025 1327 3.707316 CAGAGGAAGAAGAGGAAGAGGA 58.293 50.000 0.00 0.00 0.00 3.71
1026 1328 4.093011 CAGAGGAAGAAGAGGAAGAGGAA 58.907 47.826 0.00 0.00 0.00 3.36
1103 1408 2.658593 CGGCCGTGCTTATCCTCG 60.659 66.667 19.50 0.00 0.00 4.63
1105 1410 1.591863 GGCCGTGCTTATCCTCGTC 60.592 63.158 0.00 0.00 0.00 4.20
1270 1578 1.279271 CCCTCCAAGAAGGTACTGTGG 59.721 57.143 0.00 0.00 40.86 4.17
1275 1583 3.071023 TCCAAGAAGGTACTGTGGTTCTG 59.929 47.826 0.00 0.00 40.86 3.02
1309 1631 3.929948 GCGGGCGAATTCTGAGCG 61.930 66.667 3.52 0.00 0.00 5.03
1312 1634 2.125106 GGCGAATTCTGAGCGGGT 60.125 61.111 3.52 0.00 0.00 5.28
1322 1644 2.176045 TCTGAGCGGGTTGATGAAGTA 58.824 47.619 0.00 0.00 0.00 2.24
1328 1650 2.166664 GCGGGTTGATGAAGTAGAGAGT 59.833 50.000 0.00 0.00 0.00 3.24
1329 1651 3.368531 GCGGGTTGATGAAGTAGAGAGTT 60.369 47.826 0.00 0.00 0.00 3.01
1488 1810 0.179097 GTCTGGAACTGAGGCGGATC 60.179 60.000 0.00 0.00 36.86 3.36
1508 1831 2.290916 TCCGTGCGTTTTTAAATCTGCA 59.709 40.909 5.07 5.07 0.00 4.41
1511 1834 3.599514 CGTGCGTTTTTAAATCTGCAGAG 59.400 43.478 22.96 6.01 32.30 3.35
1513 1836 4.613031 GTGCGTTTTTAAATCTGCAGAGAC 59.387 41.667 22.96 10.12 32.30 3.36
1514 1837 4.274705 TGCGTTTTTAAATCTGCAGAGACA 59.725 37.500 22.96 6.19 0.00 3.41
1527 1850 3.743567 CAGAGACAGAAATTGCTCTGC 57.256 47.619 7.00 1.65 45.72 4.26
1528 1851 3.336468 CAGAGACAGAAATTGCTCTGCT 58.664 45.455 7.00 5.70 45.72 4.24
1529 1852 3.371591 CAGAGACAGAAATTGCTCTGCTC 59.628 47.826 16.05 16.05 45.72 4.26
1530 1853 3.261390 AGAGACAGAAATTGCTCTGCTCT 59.739 43.478 18.47 18.47 45.72 4.09
1531 1854 3.336468 AGACAGAAATTGCTCTGCTCTG 58.664 45.455 7.00 3.74 45.72 3.35
1533 1856 2.224719 ACAGAAATTGCTCTGCTCTGGT 60.225 45.455 7.00 0.00 45.72 4.00
1535 1858 2.157738 GAAATTGCTCTGCTCTGGTGT 58.842 47.619 0.00 0.00 0.00 4.16
1536 1859 1.531423 AATTGCTCTGCTCTGGTGTG 58.469 50.000 0.00 0.00 0.00 3.82
1537 1860 0.689055 ATTGCTCTGCTCTGGTGTGA 59.311 50.000 0.00 0.00 0.00 3.58
1538 1861 0.034476 TTGCTCTGCTCTGGTGTGAG 59.966 55.000 0.00 0.00 37.16 3.51
1566 1889 2.743928 GCTTACTGCTGGTGCGCT 60.744 61.111 9.73 0.00 43.34 5.92
1569 1892 1.959899 CTTACTGCTGGTGCGCTTCG 61.960 60.000 9.73 0.00 43.34 3.79
1578 1909 4.441695 TGCGCTTCGAGGCTCCAG 62.442 66.667 18.01 6.46 0.00 3.86
1586 1917 3.604582 CTTCGAGGCTCCAGAAGATTTT 58.395 45.455 20.88 0.00 42.75 1.82
1587 1918 2.977914 TCGAGGCTCCAGAAGATTTTG 58.022 47.619 9.32 0.00 0.00 2.44
1648 2006 2.422479 AGCAAGTAACGCGACTCAGATA 59.578 45.455 15.93 0.00 0.00 1.98
1684 2043 3.321682 ACCGATTGGCCATAATTGGAATG 59.678 43.478 25.08 4.43 45.48 2.67
1697 2056 2.886862 TGGAATGCAACCAAACAGTG 57.113 45.000 12.56 0.00 34.25 3.66
1700 2059 4.148079 TGGAATGCAACCAAACAGTGATA 58.852 39.130 12.56 0.00 34.25 2.15
1703 2062 5.634859 GGAATGCAACCAAACAGTGATAAAG 59.365 40.000 0.00 0.00 0.00 1.85
1705 2064 2.979813 GCAACCAAACAGTGATAAAGCG 59.020 45.455 0.00 0.00 0.00 4.68
1712 2071 5.163622 CCAAACAGTGATAAAGCGGATTGAT 60.164 40.000 0.00 0.00 0.00 2.57
1784 2143 3.124636 TGCTTTAACTCGGCGAAGAAATC 59.875 43.478 12.13 7.74 0.00 2.17
1861 2220 8.336235 TGTTTCCTCCTAGAAATACCATTGAAT 58.664 33.333 0.00 0.00 38.01 2.57
1936 2315 6.645827 CCTAGCATCTCAGTCACATTCTAATG 59.354 42.308 1.13 1.13 42.10 1.90
1963 2342 5.010922 TCAAAGTATTTTGCAGCTTGTGGAT 59.989 36.000 5.86 0.00 42.71 3.41
2028 2407 1.077212 GTGCATGCCAGGAGGTGAT 60.077 57.895 16.68 0.00 37.19 3.06
2044 2423 7.067981 CAGGAGGTGATGATCGATTCATATCTA 59.932 40.741 0.00 0.00 45.29 1.98
2045 2424 7.285172 AGGAGGTGATGATCGATTCATATCTAG 59.715 40.741 0.00 0.00 45.29 2.43
2046 2425 7.068103 GGAGGTGATGATCGATTCATATCTAGT 59.932 40.741 0.00 0.00 45.29 2.57
2148 2528 7.470935 AATCTTTCATGAATCCAACATCACA 57.529 32.000 9.40 0.00 0.00 3.58
2179 2559 9.770097 AGTAAATGATATTGTGATGGTACTCAG 57.230 33.333 0.00 0.00 0.00 3.35
2182 2562 5.604565 TGATATTGTGATGGTACTCAGCTG 58.395 41.667 7.63 7.63 32.06 4.24
2185 2565 3.599730 TGTGATGGTACTCAGCTGAAG 57.400 47.619 18.85 13.95 32.06 3.02
2197 2577 5.181748 ACTCAGCTGAAGTTAATCATGGTC 58.818 41.667 18.85 0.00 0.00 4.02
2258 2639 9.878667 TCTTTCCACAATATTGAATAGTTACGA 57.121 29.630 22.16 4.63 0.00 3.43
2285 2668 5.700832 CGATAAGGCAGCACCATTATTTCTA 59.299 40.000 0.00 0.00 43.14 2.10
2293 2676 6.694411 GCAGCACCATTATTTCTATTGAACTG 59.306 38.462 0.00 0.00 31.02 3.16
2403 2788 3.559242 GCCTTCAGTTGATCAGCTGATAC 59.441 47.826 33.99 24.19 45.71 2.24
2491 2876 0.111253 CCCAGTCTTGTTTCTGCCCT 59.889 55.000 0.00 0.00 0.00 5.19
2503 2888 6.630203 TGTTTCTGCCCTCTTAATTAGGTA 57.370 37.500 3.92 0.00 31.70 3.08
2536 2921 0.323725 ATTGGGCAAGTAGGCAGGTG 60.324 55.000 0.00 0.00 46.44 4.00
2589 2974 1.002011 GGTCTTCTTCCCTGCCACC 60.002 63.158 0.00 0.00 0.00 4.61
2646 3031 4.205065 TGCAAGATGGCTTTATTTTGGG 57.795 40.909 0.00 0.00 30.14 4.12
2754 3139 7.554959 TCTGTTATCTTTCCAGGTCTTTAGT 57.445 36.000 0.00 0.00 0.00 2.24
2793 3178 2.352715 GGCAGGTTTACTTCCATGTTGC 60.353 50.000 0.00 0.00 32.14 4.17
2887 3290 8.691797 TCTGATATGTGTGCTGTGTAGTAAATA 58.308 33.333 0.00 0.00 0.00 1.40
2890 3293 9.261180 GATATGTGTGCTGTGTAGTAAATACAT 57.739 33.333 0.00 0.00 45.94 2.29
3225 4006 2.064014 GCTGCAAAGCCATCAAAAGAC 58.936 47.619 0.00 0.00 0.00 3.01
3231 4039 0.605319 AGCCATCAAAAGACGCCGAA 60.605 50.000 0.00 0.00 0.00 4.30
3307 4115 9.850628 TGTGTAACTATATCCAAGAATATACGC 57.149 33.333 0.00 0.00 38.04 4.42
3367 4175 3.017771 GCTCCGGGGCCCAAAAATG 62.018 63.158 26.86 9.25 0.00 2.32
3519 4331 7.886338 ACCAAATGTCACTCTAATCTTTTTCC 58.114 34.615 0.00 0.00 0.00 3.13
3531 4343 1.941975 TCTTTTTCCCCGACGAAACAC 59.058 47.619 0.00 0.00 31.57 3.32
3534 4346 0.178533 TTTCCCCGACGAAACACTGT 59.821 50.000 0.00 0.00 0.00 3.55
3557 4369 3.982701 TGCTCTGTTTCGCATGAAATTTG 59.017 39.130 0.00 0.00 45.31 2.32
3581 4393 5.746307 CAAGCATGCTTGTGACACTATAT 57.254 39.130 40.10 12.54 45.91 0.86
3855 4690 4.401022 TCCTCACAGTTCTCCGTAACTTA 58.599 43.478 0.00 0.00 37.61 2.24
4123 4970 1.474077 GCAGCATCCTCAAATCGGTTT 59.526 47.619 0.00 0.00 0.00 3.27
4133 4980 2.159430 TCAAATCGGTTTGTCGCATCAG 59.841 45.455 20.07 0.00 44.03 2.90
4349 5208 8.545472 TCTGTAACTAGTGGCCATACTATTTTT 58.455 33.333 9.72 3.35 33.04 1.94
4350 5209 8.726870 TGTAACTAGTGGCCATACTATTTTTC 57.273 34.615 9.72 5.35 33.04 2.29
4351 5210 6.920569 AACTAGTGGCCATACTATTTTTCG 57.079 37.500 9.72 0.00 33.04 3.46
4352 5211 5.985911 ACTAGTGGCCATACTATTTTTCGT 58.014 37.500 9.72 0.00 33.04 3.85
4353 5212 5.815740 ACTAGTGGCCATACTATTTTTCGTG 59.184 40.000 9.72 0.00 33.04 4.35
4354 5213 3.377172 AGTGGCCATACTATTTTTCGTGC 59.623 43.478 9.72 0.00 0.00 5.34
4355 5214 3.127895 GTGGCCATACTATTTTTCGTGCA 59.872 43.478 9.72 0.00 0.00 4.57
4356 5215 3.127895 TGGCCATACTATTTTTCGTGCAC 59.872 43.478 0.00 6.82 0.00 4.57
4357 5216 3.377172 GGCCATACTATTTTTCGTGCACT 59.623 43.478 16.19 0.00 0.00 4.40
4362 5221 7.625606 GCCATACTATTTTTCGTGCACTAAGTT 60.626 37.037 16.19 1.96 0.00 2.66
4363 5222 8.234546 CCATACTATTTTTCGTGCACTAAGTTT 58.765 33.333 16.19 1.61 0.00 2.66
4364 5223 9.607285 CATACTATTTTTCGTGCACTAAGTTTT 57.393 29.630 16.19 0.00 0.00 2.43
4390 5249 5.305128 TCTTTTTGAGAAACATTCAGGGCAT 59.695 36.000 0.00 0.00 0.00 4.40
4392 5251 3.726557 TGAGAAACATTCAGGGCATCT 57.273 42.857 0.00 0.00 0.00 2.90
4394 5253 2.948315 GAGAAACATTCAGGGCATCTCC 59.052 50.000 0.00 0.00 0.00 3.71
4395 5254 2.309755 AGAAACATTCAGGGCATCTCCA 59.690 45.455 0.00 0.00 36.21 3.86
4397 5256 2.134789 ACATTCAGGGCATCTCCAAC 57.865 50.000 0.00 0.00 36.21 3.77
4435 7114 2.184322 CACGGACAGGTGGGATCG 59.816 66.667 0.00 0.00 34.27 3.69
4437 7116 4.530857 CGGACAGGTGGGATCGGC 62.531 72.222 0.00 0.00 0.00 5.54
4506 7186 6.879188 ACAATTTTACAACAACTCAAACCG 57.121 33.333 0.00 0.00 0.00 4.44
4511 7191 2.014128 ACAACAACTCAAACCGACCAG 58.986 47.619 0.00 0.00 0.00 4.00
4514 7194 0.859232 CAACTCAAACCGACCAGACG 59.141 55.000 0.00 0.00 0.00 4.18
4522 7202 2.536761 ACCGACCAGACGAAATTCAA 57.463 45.000 0.00 0.00 35.09 2.69
4535 7215 2.399396 AATTCAAGCAAACACGACCG 57.601 45.000 0.00 0.00 0.00 4.79
4541 7221 1.314730 AGCAAACACGACCGGATTTT 58.685 45.000 9.46 0.00 0.00 1.82
4617 7297 8.116753 GTGATGGATTTCAGTACTTTTACATCG 58.883 37.037 0.00 0.00 35.12 3.84
4618 7298 6.978343 TGGATTTCAGTACTTTTACATCGG 57.022 37.500 0.00 0.00 0.00 4.18
4619 7299 6.703319 TGGATTTCAGTACTTTTACATCGGA 58.297 36.000 0.00 0.00 0.00 4.55
4620 7300 6.592607 TGGATTTCAGTACTTTTACATCGGAC 59.407 38.462 0.00 0.00 0.00 4.79
4621 7301 6.817140 GGATTTCAGTACTTTTACATCGGACT 59.183 38.462 0.00 0.00 0.00 3.85
4624 7304 6.092955 TCAGTACTTTTACATCGGACTTGT 57.907 37.500 0.00 0.00 0.00 3.16
4625 7305 6.154445 TCAGTACTTTTACATCGGACTTGTC 58.846 40.000 0.00 0.00 0.00 3.18
4626 7306 6.015688 TCAGTACTTTTACATCGGACTTGTCT 60.016 38.462 0.00 0.00 0.00 3.41
4628 7308 4.315803 ACTTTTACATCGGACTTGTCTGG 58.684 43.478 9.41 0.00 0.00 3.86
4631 7315 0.687354 ACATCGGACTTGTCTGGCTT 59.313 50.000 9.41 0.00 0.00 4.35
4693 7426 3.589288 GGATCCCTGGAGGTATATGCTTT 59.411 47.826 0.00 0.00 36.75 3.51
4710 7443 0.037139 TTTAGCGCAAAGGACGGCTA 60.037 50.000 11.47 0.00 36.97 3.93
4723 7456 0.398664 ACGGCTAGCTTCCCCACTAT 60.399 55.000 15.72 0.00 0.00 2.12
4733 7467 3.321111 GCTTCCCCACTATTCATCGAGTA 59.679 47.826 0.00 0.00 0.00 2.59
4734 7468 4.202223 GCTTCCCCACTATTCATCGAGTAA 60.202 45.833 0.00 0.00 0.00 2.24
4741 7475 5.424757 CACTATTCATCGAGTAAAACCCCA 58.575 41.667 0.00 0.00 0.00 4.96
4845 7580 0.321653 GAACCAGGCAAGACACCGAT 60.322 55.000 0.00 0.00 0.00 4.18
4893 7629 0.396139 GCCTTCATGGGATCCAAGCA 60.396 55.000 15.23 2.44 36.95 3.91
4894 7630 1.396653 CCTTCATGGGATCCAAGCAC 58.603 55.000 15.23 0.00 36.95 4.40
4895 7631 1.064166 CCTTCATGGGATCCAAGCACT 60.064 52.381 15.23 0.00 36.95 4.40
5003 7739 2.696506 CTTCTGTCTCTGCTTGCATGA 58.303 47.619 3.33 0.00 0.00 3.07
5009 7745 4.170062 CTGCTTGCATGACGCGGG 62.170 66.667 12.47 0.00 46.97 6.13
5088 7920 2.108514 CGCCCATGATGTCGTGCTT 61.109 57.895 0.00 0.00 0.00 3.91
5161 8005 2.018544 CGGCGAGTTGTTGAACCAA 58.981 52.632 0.00 0.00 31.81 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.168714 GGACCTCAGTTGCCATGAAC 58.831 55.000 0.00 0.00 0.00 3.18
44 45 2.803155 TAGCTGCAAACCTGGCCTCG 62.803 60.000 3.32 0.00 0.00 4.63
85 86 2.028476 TGCTGCTTACTACACAACGGAT 60.028 45.455 0.00 0.00 0.00 4.18
141 151 2.174360 CACACCAGACAGATCTCCTCA 58.826 52.381 0.00 0.00 30.42 3.86
151 161 2.842462 ACGCCTCCACACCAGACA 60.842 61.111 0.00 0.00 0.00 3.41
154 164 3.596066 CTCCACGCCTCCACACCAG 62.596 68.421 0.00 0.00 0.00 4.00
188 198 2.935481 CTCAAGGGCCAGTGGGGA 60.935 66.667 12.15 0.00 40.01 4.81
352 362 2.835895 GTCTCCTCTCCGCCCCTC 60.836 72.222 0.00 0.00 0.00 4.30
359 369 1.755008 CCTCACCCGTCTCCTCTCC 60.755 68.421 0.00 0.00 0.00 3.71
368 378 1.913762 CACCTTCCTCCTCACCCGT 60.914 63.158 0.00 0.00 0.00 5.28
381 391 4.003788 CCTGGTCGCCGTCACCTT 62.004 66.667 0.00 0.00 34.66 3.50
686 973 1.638133 CGACTCCACTGCATCTTCTG 58.362 55.000 0.00 0.00 0.00 3.02
738 1033 2.858344 CAGTCCGATCGATGGTGTAAAC 59.142 50.000 18.66 0.00 0.00 2.01
865 1163 1.306654 AATGGGAGGGAGGCACGTA 60.307 57.895 0.00 0.00 0.00 3.57
972 1270 3.957260 GCTGCAGACTTGAAGCGA 58.043 55.556 20.43 0.00 45.79 4.93
1024 1326 3.004106 CCATCTCCGATGGAAATTGCTTC 59.996 47.826 16.03 0.00 41.64 3.86
1025 1327 2.954318 CCATCTCCGATGGAAATTGCTT 59.046 45.455 16.03 0.00 41.64 3.91
1026 1328 2.579873 CCATCTCCGATGGAAATTGCT 58.420 47.619 16.03 0.00 41.64 3.91
1246 1554 2.666098 TACCTTCTTGGAGGGCGGC 61.666 63.158 0.00 0.00 41.31 6.53
1270 1578 1.818642 AACCAGATGAGCAGCAGAAC 58.181 50.000 0.00 0.00 0.00 3.01
1275 1583 1.156645 CGCCTAACCAGATGAGCAGC 61.157 60.000 0.00 0.00 0.00 5.25
1309 1631 8.669243 CATAAAAACTCTCTACTTCATCAACCC 58.331 37.037 0.00 0.00 0.00 4.11
1312 1634 9.778741 ACACATAAAAACTCTCTACTTCATCAA 57.221 29.630 0.00 0.00 0.00 2.57
1322 1644 5.304686 TCCCACACACATAAAAACTCTCT 57.695 39.130 0.00 0.00 0.00 3.10
1328 1650 7.437748 CACCTAAAATCCCACACACATAAAAA 58.562 34.615 0.00 0.00 0.00 1.94
1329 1651 6.517529 GCACCTAAAATCCCACACACATAAAA 60.518 38.462 0.00 0.00 0.00 1.52
1488 1810 2.656085 TGCAGATTTAAAAACGCACGG 58.344 42.857 5.07 0.00 0.00 4.94
1508 1831 3.261390 AGAGCAGAGCAATTTCTGTCTCT 59.739 43.478 18.47 18.47 44.47 3.10
1511 1834 2.419324 CCAGAGCAGAGCAATTTCTGTC 59.581 50.000 8.56 5.69 45.07 3.51
1513 1836 2.161808 CACCAGAGCAGAGCAATTTCTG 59.838 50.000 3.20 3.20 45.85 3.02
1514 1837 2.224719 ACACCAGAGCAGAGCAATTTCT 60.225 45.455 0.00 0.00 0.00 2.52
1527 1850 3.931468 CAGTTCATAAGCTCACACCAGAG 59.069 47.826 0.00 0.00 38.68 3.35
1528 1851 3.866066 GCAGTTCATAAGCTCACACCAGA 60.866 47.826 0.00 0.00 0.00 3.86
1529 1852 2.417933 GCAGTTCATAAGCTCACACCAG 59.582 50.000 0.00 0.00 0.00 4.00
1530 1853 2.038952 AGCAGTTCATAAGCTCACACCA 59.961 45.455 0.00 0.00 32.05 4.17
1531 1854 2.704572 AGCAGTTCATAAGCTCACACC 58.295 47.619 0.00 0.00 32.05 4.16
1533 1856 4.931601 CAGTAAGCAGTTCATAAGCTCACA 59.068 41.667 0.00 0.00 37.70 3.58
1535 1858 3.935203 GCAGTAAGCAGTTCATAAGCTCA 59.065 43.478 0.00 0.00 44.79 4.26
1536 1859 4.528531 GCAGTAAGCAGTTCATAAGCTC 57.471 45.455 0.00 0.00 44.79 4.09
1566 1889 3.007940 TCAAAATCTTCTGGAGCCTCGAA 59.992 43.478 0.00 0.00 0.00 3.71
1569 1892 5.066246 CAGATTCAAAATCTTCTGGAGCCTC 59.934 44.000 0.00 0.00 33.54 4.70
1586 1917 0.955428 GTGGCGGTGAAGCAGATTCA 60.955 55.000 0.00 0.00 45.79 2.57
1587 1918 1.648467 GGTGGCGGTGAAGCAGATTC 61.648 60.000 0.00 0.00 39.27 2.52
1632 1990 6.464895 AGTATACTATCTGAGTCGCGTTAC 57.535 41.667 5.77 0.00 39.81 2.50
1636 1994 5.749620 ACAAAGTATACTATCTGAGTCGCG 58.250 41.667 5.65 0.00 39.81 5.87
1648 2006 5.587443 GGCCAATCGGTAAACAAAGTATACT 59.413 40.000 0.00 0.00 33.28 2.12
1684 2043 2.979813 CGCTTTATCACTGTTTGGTTGC 59.020 45.455 0.00 0.00 0.00 4.17
1763 2122 3.671256 GATTTCTTCGCCGAGTTAAAGC 58.329 45.455 0.00 0.00 0.00 3.51
1825 2184 5.888901 TCTAGGAGGAAACAGAAGTACAGA 58.111 41.667 0.00 0.00 0.00 3.41
1826 2185 6.591750 TTCTAGGAGGAAACAGAAGTACAG 57.408 41.667 0.00 0.00 0.00 2.74
1827 2186 6.989155 TTTCTAGGAGGAAACAGAAGTACA 57.011 37.500 0.00 0.00 31.29 2.90
1828 2187 7.980662 GGTATTTCTAGGAGGAAACAGAAGTAC 59.019 40.741 7.09 7.09 38.49 2.73
1829 2188 7.676893 TGGTATTTCTAGGAGGAAACAGAAGTA 59.323 37.037 0.00 0.00 37.91 2.24
1830 2189 6.500751 TGGTATTTCTAGGAGGAAACAGAAGT 59.499 38.462 0.00 0.00 37.91 3.01
1831 2190 6.947464 TGGTATTTCTAGGAGGAAACAGAAG 58.053 40.000 0.00 0.00 37.91 2.85
1832 2191 6.945636 TGGTATTTCTAGGAGGAAACAGAA 57.054 37.500 0.00 0.00 37.91 3.02
1878 2237 7.347252 AGTATCACACCTACTGAAGATGACTA 58.653 38.462 0.00 0.00 0.00 2.59
1936 2315 4.687483 ACAAGCTGCAAAATACTTTGATGC 59.313 37.500 0.00 3.78 44.03 3.91
1963 2342 1.280133 CAGTGCCCTTCCTCATCTTGA 59.720 52.381 0.00 0.00 0.00 3.02
2064 2443 8.912787 AATAAGTTCTAGACAGTACAATCGTG 57.087 34.615 0.00 0.00 0.00 4.35
2102 2481 9.454859 AGATTATCACTCTAAAGAAACCAAAGG 57.545 33.333 0.00 0.00 0.00 3.11
2138 2518 6.558771 TCATTTACTCAACTGTGATGTTGG 57.441 37.500 7.40 2.20 45.15 3.77
2179 2559 9.149225 CATAGATAGACCATGATTAACTTCAGC 57.851 37.037 0.00 0.00 0.00 4.26
2215 2595 8.912988 TGTGGAAAGATAAACTCAACTCATTTT 58.087 29.630 0.00 0.00 0.00 1.82
2247 2628 4.980434 TGCCTTATCGCTTCGTAACTATTC 59.020 41.667 0.00 0.00 0.00 1.75
2258 2639 0.107017 ATGGTGCTGCCTTATCGCTT 60.107 50.000 0.00 0.00 38.35 4.68
2285 2668 3.696051 AGCACAACTTCACACAGTTCAAT 59.304 39.130 0.00 0.00 34.60 2.57
2571 2956 1.002011 GGTGGCAGGGAAGAAGACC 60.002 63.158 0.00 0.00 0.00 3.85
2589 2974 0.792640 ACCACTACGACGTGTACTCG 59.207 55.000 15.29 15.29 37.17 4.18
2646 3031 4.058817 CCCTATTTCCTCGATGCAAGTAC 58.941 47.826 0.00 0.00 0.00 2.73
2721 3106 7.050377 CCTGGAAAGATAACAGATAAAGCTCA 58.950 38.462 0.00 0.00 34.21 4.26
2754 3139 4.141711 CCTGCCTAGTAAAGCTATGGTGAA 60.142 45.833 0.00 0.00 0.00 3.18
2841 3233 4.093998 CAGATGCATTTCTGTGTGGTCTAC 59.906 45.833 8.85 0.00 38.64 2.59
2901 3304 3.218398 GCGCATCAGCACGTAATAATTC 58.782 45.455 0.30 0.00 42.27 2.17
3145 3925 2.022934 TGCTGTGTGTCAGAAATGCAA 58.977 42.857 0.00 0.00 46.27 4.08
3183 3964 2.062177 GGGTTCTCCGGGGATTCGA 61.062 63.158 3.90 0.00 33.83 3.71
3225 4006 5.007626 TCTCATTATTTTCTCCATTTCGGCG 59.992 40.000 0.00 0.00 33.14 6.46
3231 4039 9.650714 TCCATTGATCTCATTATTTTCTCCATT 57.349 29.630 0.00 0.00 0.00 3.16
3307 4115 9.241317 CCAAATTGAATTTCCGATTTCTATCTG 57.759 33.333 0.00 0.00 29.96 2.90
3496 4304 7.315890 GGGGAAAAAGATTAGAGTGACATTTG 58.684 38.462 0.00 0.00 0.00 2.32
3506 4314 4.540359 TTCGTCGGGGAAAAAGATTAGA 57.460 40.909 0.00 0.00 0.00 2.10
3508 4316 4.213906 GTGTTTCGTCGGGGAAAAAGATTA 59.786 41.667 3.85 0.00 37.63 1.75
3519 4331 1.157870 AGCAACAGTGTTTCGTCGGG 61.158 55.000 5.57 0.00 0.00 5.14
3718 4541 2.920524 TCACCTTCAACGCCAAAGTTA 58.079 42.857 0.00 0.00 32.35 2.24
3855 4690 9.507280 CAGTTCAAATAAACATATTTCGCTGAT 57.493 29.630 0.00 0.00 30.16 2.90
4123 4970 0.390340 GACAGAAGGCTGATGCGACA 60.390 55.000 0.00 0.00 45.17 4.35
4365 5224 5.128499 TGCCCTGAATGTTTCTCAAAAAGAA 59.872 36.000 0.00 0.00 42.35 2.52
4366 5225 4.648762 TGCCCTGAATGTTTCTCAAAAAGA 59.351 37.500 0.00 0.00 0.00 2.52
4367 5226 4.947645 TGCCCTGAATGTTTCTCAAAAAG 58.052 39.130 0.00 0.00 0.00 2.27
4368 5227 5.305128 AGATGCCCTGAATGTTTCTCAAAAA 59.695 36.000 0.00 0.00 0.00 1.94
4369 5228 4.834496 AGATGCCCTGAATGTTTCTCAAAA 59.166 37.500 0.00 0.00 0.00 2.44
4370 5229 4.410099 AGATGCCCTGAATGTTTCTCAAA 58.590 39.130 0.00 0.00 0.00 2.69
4371 5230 4.012374 GAGATGCCCTGAATGTTTCTCAA 58.988 43.478 0.00 0.00 0.00 3.02
4372 5231 3.614092 GAGATGCCCTGAATGTTTCTCA 58.386 45.455 0.00 0.00 0.00 3.27
4373 5232 2.948315 GGAGATGCCCTGAATGTTTCTC 59.052 50.000 0.00 0.00 0.00 2.87
4374 5233 2.309755 TGGAGATGCCCTGAATGTTTCT 59.690 45.455 0.00 0.00 34.97 2.52
4375 5234 2.726821 TGGAGATGCCCTGAATGTTTC 58.273 47.619 0.00 0.00 34.97 2.78
4376 5235 2.827921 GTTGGAGATGCCCTGAATGTTT 59.172 45.455 0.00 0.00 34.97 2.83
4377 5236 2.225091 TGTTGGAGATGCCCTGAATGTT 60.225 45.455 0.00 0.00 34.97 2.71
4378 5237 1.355381 TGTTGGAGATGCCCTGAATGT 59.645 47.619 0.00 0.00 34.97 2.71
4379 5238 2.133281 TGTTGGAGATGCCCTGAATG 57.867 50.000 0.00 0.00 34.97 2.67
4380 5239 2.905415 TTGTTGGAGATGCCCTGAAT 57.095 45.000 0.00 0.00 34.97 2.57
4381 5240 2.673775 TTTGTTGGAGATGCCCTGAA 57.326 45.000 0.00 0.00 34.97 3.02
4382 5241 2.627699 GTTTTTGTTGGAGATGCCCTGA 59.372 45.455 0.00 0.00 34.97 3.86
4383 5242 2.289010 GGTTTTTGTTGGAGATGCCCTG 60.289 50.000 0.00 0.00 34.97 4.45
4390 5249 2.218603 GCGAGAGGTTTTTGTTGGAGA 58.781 47.619 0.00 0.00 0.00 3.71
4392 5251 2.045561 TGCGAGAGGTTTTTGTTGGA 57.954 45.000 0.00 0.00 0.00 3.53
4394 5253 2.665519 CGGATGCGAGAGGTTTTTGTTG 60.666 50.000 0.00 0.00 0.00 3.33
4395 5254 1.535462 CGGATGCGAGAGGTTTTTGTT 59.465 47.619 0.00 0.00 0.00 2.83
4397 5256 1.128692 GACGGATGCGAGAGGTTTTTG 59.871 52.381 15.49 0.00 0.00 2.44
4486 7166 5.125739 TGGTCGGTTTGAGTTGTTGTAAAAT 59.874 36.000 0.00 0.00 0.00 1.82
4490 7170 3.118702 TCTGGTCGGTTTGAGTTGTTGTA 60.119 43.478 0.00 0.00 0.00 2.41
4506 7186 3.896648 TTGCTTGAATTTCGTCTGGTC 57.103 42.857 0.00 0.00 0.00 4.02
4511 7191 3.417645 GTCGTGTTTGCTTGAATTTCGTC 59.582 43.478 0.00 0.00 0.00 4.20
4514 7194 2.719046 CGGTCGTGTTTGCTTGAATTTC 59.281 45.455 0.00 0.00 0.00 2.17
4522 7202 1.314730 AAAATCCGGTCGTGTTTGCT 58.685 45.000 0.00 0.00 0.00 3.91
4591 7271 8.116753 CGATGTAAAAGTACTGAAATCCATCAC 58.883 37.037 0.00 0.00 0.00 3.06
4595 7275 6.592607 GTCCGATGTAAAAGTACTGAAATCCA 59.407 38.462 0.00 0.00 0.00 3.41
4608 7288 3.071479 GCCAGACAAGTCCGATGTAAAA 58.929 45.455 0.00 0.00 0.00 1.52
4617 7297 1.882623 CCTTCAAAGCCAGACAAGTCC 59.117 52.381 0.00 0.00 0.00 3.85
4618 7298 2.576615 ACCTTCAAAGCCAGACAAGTC 58.423 47.619 0.00 0.00 0.00 3.01
4619 7299 2.736670 ACCTTCAAAGCCAGACAAGT 57.263 45.000 0.00 0.00 0.00 3.16
4620 7300 7.396540 AATTATACCTTCAAAGCCAGACAAG 57.603 36.000 0.00 0.00 0.00 3.16
4621 7301 8.871629 TTAATTATACCTTCAAAGCCAGACAA 57.128 30.769 0.00 0.00 0.00 3.18
4654 7338 3.505184 CGCGGGCGGCAATTTAGT 61.505 61.111 17.50 0.00 43.84 2.24
4693 7426 1.141019 CTAGCCGTCCTTTGCGCTA 59.859 57.895 9.73 0.00 0.00 4.26
4710 7443 2.366916 CTCGATGAATAGTGGGGAAGCT 59.633 50.000 0.00 0.00 0.00 3.74
4723 7456 2.617021 GCCTGGGGTTTTACTCGATGAA 60.617 50.000 0.00 0.00 0.00 2.57
4733 7467 0.178924 AAGCATCAGCCTGGGGTTTT 60.179 50.000 0.00 0.00 43.56 2.43
4734 7468 0.613012 GAAGCATCAGCCTGGGGTTT 60.613 55.000 0.00 0.00 43.56 3.27
4953 7689 1.098869 GGAGAGCGATGAGTCAGTGA 58.901 55.000 0.00 0.00 0.00 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.