Multiple sequence alignment - TraesCS4A01G402500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G402500 chr4A 100.000 4603 0 0 1 4603 675971011 675966409 0.000000e+00 8501.0
1 TraesCS4A01G402500 chr4A 92.000 50 1 3 2766 2812 200089156 200089205 2.970000e-07 67.6
2 TraesCS4A01G402500 chr7A 91.165 3735 195 47 918 4603 63446368 63442720 0.000000e+00 4944.0
3 TraesCS4A01G402500 chr7D 93.598 1937 93 9 857 2775 58871674 58869751 0.000000e+00 2861.0
4 TraesCS4A01G402500 chr7D 90.051 985 71 18 3631 4603 58868914 58867945 0.000000e+00 1251.0
5 TraesCS4A01G402500 chr7D 92.770 816 51 5 2835 3643 58869753 58868939 0.000000e+00 1173.0
6 TraesCS4A01G402500 chr7D 87.282 574 62 8 1 570 620471165 620471731 0.000000e+00 645.0
7 TraesCS4A01G402500 chr7D 94.444 36 1 1 2770 2804 252554428 252554393 2.000000e-03 54.7
8 TraesCS4A01G402500 chr1B 89.554 718 69 5 1 715 622590842 622591556 0.000000e+00 905.0
9 TraesCS4A01G402500 chr1B 92.857 42 1 2 2766 2805 545427942 545427983 4.970000e-05 60.2
10 TraesCS4A01G402500 chr6B 89.276 718 70 5 1 715 135718349 135719062 0.000000e+00 893.0
11 TraesCS4A01G402500 chr6B 93.805 113 7 0 720 832 138590727 138590615 2.200000e-38 171.0
12 TraesCS4A01G402500 chr5D 89.152 719 69 7 1 715 528219214 528219927 0.000000e+00 887.0
13 TraesCS4A01G402500 chr3D 88.674 724 67 10 1 715 9143480 9142763 0.000000e+00 869.0
14 TraesCS4A01G402500 chr3D 86.047 129 15 2 2649 2774 50123978 50124106 8.030000e-28 135.0
15 TraesCS4A01G402500 chr7B 87.805 574 59 8 1 570 716092818 716093384 0.000000e+00 662.0
16 TraesCS4A01G402500 chr7B 91.892 111 9 0 720 830 34609755 34609645 6.170000e-34 156.0
17 TraesCS4A01G402500 chr7B 89.831 118 12 0 715 832 709475660 709475543 7.980000e-33 152.0
18 TraesCS4A01G402500 chr3A 92.793 111 7 1 720 830 156231329 156231220 4.770000e-35 159.0
19 TraesCS4A01G402500 chr3A 91.837 49 1 3 2767 2812 1628444 1628396 1.070000e-06 65.8
20 TraesCS4A01G402500 chr1D 92.035 113 9 0 720 832 85196117 85196229 4.770000e-35 159.0
21 TraesCS4A01G402500 chrUn 88.800 125 12 1 708 832 288604573 288604695 7.980000e-33 152.0
22 TraesCS4A01G402500 chr2A 91.071 112 10 0 716 827 676391795 676391684 7.980000e-33 152.0
23 TraesCS4A01G402500 chr5B 90.435 115 9 2 718 831 622393443 622393556 2.870000e-32 150.0
24 TraesCS4A01G402500 chr4D 88.710 124 13 1 708 830 128641921 128641798 2.870000e-32 150.0
25 TraesCS4A01G402500 chr1A 93.617 47 1 2 2768 2812 530817843 530817889 8.260000e-08 69.4
26 TraesCS4A01G402500 chr1A 89.583 48 3 2 2767 2812 49299225 49299272 4.970000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G402500 chr4A 675966409 675971011 4602 True 8501.000000 8501 100.000000 1 4603 1 chr4A.!!$R1 4602
1 TraesCS4A01G402500 chr7A 63442720 63446368 3648 True 4944.000000 4944 91.165000 918 4603 1 chr7A.!!$R1 3685
2 TraesCS4A01G402500 chr7D 58867945 58871674 3729 True 1761.666667 2861 92.139667 857 4603 3 chr7D.!!$R2 3746
3 TraesCS4A01G402500 chr7D 620471165 620471731 566 False 645.000000 645 87.282000 1 570 1 chr7D.!!$F1 569
4 TraesCS4A01G402500 chr1B 622590842 622591556 714 False 905.000000 905 89.554000 1 715 1 chr1B.!!$F2 714
5 TraesCS4A01G402500 chr6B 135718349 135719062 713 False 893.000000 893 89.276000 1 715 1 chr6B.!!$F1 714
6 TraesCS4A01G402500 chr5D 528219214 528219927 713 False 887.000000 887 89.152000 1 715 1 chr5D.!!$F1 714
7 TraesCS4A01G402500 chr3D 9142763 9143480 717 True 869.000000 869 88.674000 1 715 1 chr3D.!!$R1 714
8 TraesCS4A01G402500 chr7B 716092818 716093384 566 False 662.000000 662 87.805000 1 570 1 chr7B.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 791 0.378257 CGAGCTGTTTTGCACACTGT 59.622 50.000 0.00 0.00 34.99 3.55 F
897 905 1.006220 CGAAAGTTTGCAAGGGGGC 60.006 57.895 0.00 0.00 0.00 5.80 F
2115 2153 0.886563 AGATTGCTGCAAGTTGCTCC 59.113 50.000 27.17 17.96 45.31 4.70 F
2757 2798 0.391597 GGTGTCAACAGAGGGTCGAA 59.608 55.000 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2010 0.390603 CAGCCAACGACCGGATTGTA 60.391 55.000 9.46 0.0 0.00 2.41 R
2157 2195 0.535335 TTTCTGCCTGGTAGTAGCCG 59.465 55.000 11.69 0.0 0.00 5.52 R
3233 3295 1.005512 AACCAGCGCGTCATACACA 60.006 52.632 8.43 0.0 0.00 3.72 R
4239 4343 0.389166 GGAATCTAGCGAGATGCCGG 60.389 60.000 17.27 0.0 46.32 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.809001 TCTCCAAATAGAAGTGTCAGCATT 58.191 37.500 0.00 0.00 0.00 3.56
130 131 4.202398 TGAGTCTTGAGCAATTCTCCAAGT 60.202 41.667 0.00 0.00 41.18 3.16
184 185 8.706521 GGACTGGAGATTTCTAATACCTAAACT 58.293 37.037 0.00 0.00 0.00 2.66
201 202 7.114095 ACCTAAACTACCACTTTTCTTGTCAA 58.886 34.615 0.00 0.00 0.00 3.18
212 213 7.599621 CCACTTTTCTTGTCAATGCAAATATCA 59.400 33.333 0.00 0.00 0.00 2.15
274 276 5.068215 TCTTTTATCCCTGTCCACCAAAA 57.932 39.130 0.00 0.00 0.00 2.44
285 287 5.126061 CCTGTCCACCAAAAATCTCCTAATG 59.874 44.000 0.00 0.00 0.00 1.90
310 312 5.282055 AGCAGTGATACTAGCAAGCAATA 57.718 39.130 0.00 0.00 0.00 1.90
390 396 5.464030 TTAATAAGAGTAAGCCTAGCGGG 57.536 43.478 0.00 0.00 38.36 6.13
407 413 2.614481 GCGGGGTGAGACATTCTGTTTA 60.614 50.000 0.00 0.00 0.00 2.01
443 449 7.871853 TGTAAGCTTGGATTTAAACTTGTCTC 58.128 34.615 9.86 0.00 0.00 3.36
449 455 5.070001 TGGATTTAAACTTGTCTCCCACAG 58.930 41.667 0.00 0.00 35.97 3.66
466 472 3.681897 CCACAGATGAGTAAGCAACAGAC 59.318 47.826 0.00 0.00 0.00 3.51
499 505 0.615331 GCAAGACCAGAGGATGTCCA 59.385 55.000 1.30 0.00 38.89 4.02
505 511 3.588842 AGACCAGAGGATGTCCAAAATGA 59.411 43.478 1.30 0.00 38.89 2.57
507 513 4.338879 ACCAGAGGATGTCCAAAATGAAG 58.661 43.478 1.30 0.00 38.89 3.02
514 521 6.546484 AGGATGTCCAAAATGAAGAAAGAGA 58.454 36.000 1.30 0.00 38.89 3.10
515 522 7.180663 AGGATGTCCAAAATGAAGAAAGAGAT 58.819 34.615 1.30 0.00 38.89 2.75
517 524 6.017400 TGTCCAAAATGAAGAAAGAGATGC 57.983 37.500 0.00 0.00 0.00 3.91
545 553 3.460340 TCAGGGACAGGAAACAACCTTTA 59.540 43.478 0.00 0.00 38.32 1.85
555 563 5.603596 GGAAACAACCTTTAATTTCCCGTT 58.396 37.500 5.13 0.00 42.84 4.44
610 618 1.344114 TCCTGACTTTGCCCAATTTGC 59.656 47.619 0.00 0.00 0.00 3.68
616 624 2.158971 ACTTTGCCCAATTTGCGACTTT 60.159 40.909 0.00 0.00 0.00 2.66
698 706 1.881925 GCTGCACCACACACCAATAGA 60.882 52.381 0.00 0.00 0.00 1.98
706 714 4.225942 ACCACACACCAATAGATCATCTGT 59.774 41.667 0.00 0.00 0.00 3.41
715 723 9.281371 CACCAATAGATCATCTGTAAACATCAT 57.719 33.333 0.00 0.00 0.00 2.45
716 724 9.857656 ACCAATAGATCATCTGTAAACATCATT 57.142 29.630 0.00 0.00 0.00 2.57
724 732 9.988815 ATCATCTGTAAACATCATTAGTACTCC 57.011 33.333 0.00 0.00 0.00 3.85
725 733 8.421784 TCATCTGTAAACATCATTAGTACTCCC 58.578 37.037 0.00 0.00 0.00 4.30
726 734 7.973048 TCTGTAAACATCATTAGTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
727 735 8.008513 TCTGTAAACATCATTAGTACTCCCTC 57.991 38.462 0.00 0.00 0.00 4.30
728 736 7.069578 TCTGTAAACATCATTAGTACTCCCTCC 59.930 40.741 0.00 0.00 0.00 4.30
729 737 4.939052 AACATCATTAGTACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
730 738 3.912248 ACATCATTAGTACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
731 739 4.287552 ACATCATTAGTACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
732 740 4.341520 ACATCATTAGTACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
733 741 3.972133 TCATTAGTACTCCCTCCGTTCA 58.028 45.455 0.00 0.00 0.00 3.18
734 742 4.543689 TCATTAGTACTCCCTCCGTTCAT 58.456 43.478 0.00 0.00 0.00 2.57
735 743 4.960469 TCATTAGTACTCCCTCCGTTCATT 59.040 41.667 0.00 0.00 0.00 2.57
736 744 5.424252 TCATTAGTACTCCCTCCGTTCATTT 59.576 40.000 0.00 0.00 0.00 2.32
737 745 5.750352 TTAGTACTCCCTCCGTTCATTTT 57.250 39.130 0.00 0.00 0.00 1.82
738 746 4.635699 AGTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
739 747 5.750352 AGTACTCCCTCCGTTCATTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
740 748 6.309389 AGTACTCCCTCCGTTCATTTTTAT 57.691 37.500 0.00 0.00 0.00 1.40
741 749 7.427989 AGTACTCCCTCCGTTCATTTTTATA 57.572 36.000 0.00 0.00 0.00 0.98
742 750 7.854337 AGTACTCCCTCCGTTCATTTTTATAA 58.146 34.615 0.00 0.00 0.00 0.98
743 751 7.985752 AGTACTCCCTCCGTTCATTTTTATAAG 59.014 37.037 0.00 0.00 0.00 1.73
744 752 6.718294 ACTCCCTCCGTTCATTTTTATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
745 753 6.822170 ACTCCCTCCGTTCATTTTTATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
746 754 5.813672 TCCCTCCGTTCATTTTTATAAGTCG 59.186 40.000 0.00 0.00 0.00 4.18
747 755 5.583457 CCCTCCGTTCATTTTTATAAGTCGT 59.417 40.000 0.00 0.00 0.00 4.34
748 756 6.093082 CCCTCCGTTCATTTTTATAAGTCGTT 59.907 38.462 0.00 0.00 0.00 3.85
749 757 7.361457 CCCTCCGTTCATTTTTATAAGTCGTTT 60.361 37.037 0.00 0.00 0.00 3.60
750 758 7.691050 CCTCCGTTCATTTTTATAAGTCGTTTC 59.309 37.037 0.00 0.00 0.00 2.78
751 759 8.085720 TCCGTTCATTTTTATAAGTCGTTTCA 57.914 30.769 0.00 0.00 0.00 2.69
752 760 8.225107 TCCGTTCATTTTTATAAGTCGTTTCAG 58.775 33.333 0.00 0.00 0.00 3.02
753 761 8.225107 CCGTTCATTTTTATAAGTCGTTTCAGA 58.775 33.333 0.00 0.00 0.00 3.27
754 762 9.037417 CGTTCATTTTTATAAGTCGTTTCAGAC 57.963 33.333 0.00 0.00 41.23 3.51
755 763 9.872757 GTTCATTTTTATAAGTCGTTTCAGACA 57.127 29.630 0.00 0.00 43.24 3.41
757 765 9.872757 TCATTTTTATAAGTCGTTTCAGACAAC 57.127 29.630 0.00 0.00 43.24 3.32
758 766 9.113876 CATTTTTATAAGTCGTTTCAGACAACC 57.886 33.333 0.00 0.00 43.24 3.77
759 767 6.456447 TTTATAAGTCGTTTCAGACAACCG 57.544 37.500 0.00 0.00 43.24 4.44
760 768 2.589798 AAGTCGTTTCAGACAACCGA 57.410 45.000 0.00 0.00 43.24 4.69
761 769 2.589798 AGTCGTTTCAGACAACCGAA 57.410 45.000 0.00 0.00 43.24 4.30
762 770 2.896168 AGTCGTTTCAGACAACCGAAA 58.104 42.857 0.00 0.00 43.24 3.46
763 771 3.463944 AGTCGTTTCAGACAACCGAAAT 58.536 40.909 0.00 0.00 43.24 2.17
764 772 3.493503 AGTCGTTTCAGACAACCGAAATC 59.506 43.478 0.00 0.00 43.24 2.17
765 773 2.473609 TCGTTTCAGACAACCGAAATCG 59.526 45.455 0.00 0.00 33.93 3.34
766 774 2.473609 CGTTTCAGACAACCGAAATCGA 59.526 45.455 4.04 0.00 43.02 3.59
767 775 3.421826 CGTTTCAGACAACCGAAATCGAG 60.422 47.826 4.04 0.00 43.02 4.04
768 776 1.710013 TCAGACAACCGAAATCGAGC 58.290 50.000 4.04 0.00 43.02 5.03
769 777 1.272490 TCAGACAACCGAAATCGAGCT 59.728 47.619 4.04 0.00 43.02 4.09
770 778 1.391485 CAGACAACCGAAATCGAGCTG 59.609 52.381 4.04 1.34 43.02 4.24
771 779 1.000955 AGACAACCGAAATCGAGCTGT 59.999 47.619 4.04 4.47 43.02 4.40
772 780 1.798813 GACAACCGAAATCGAGCTGTT 59.201 47.619 4.04 0.00 43.02 3.16
773 781 2.218603 ACAACCGAAATCGAGCTGTTT 58.781 42.857 4.04 0.00 43.02 2.83
774 782 2.616842 ACAACCGAAATCGAGCTGTTTT 59.383 40.909 4.04 0.00 43.02 2.43
775 783 2.969443 ACCGAAATCGAGCTGTTTTG 57.031 45.000 4.04 0.00 43.02 2.44
776 784 1.069227 ACCGAAATCGAGCTGTTTTGC 60.069 47.619 4.04 0.00 43.02 3.68
777 785 1.069296 CCGAAATCGAGCTGTTTTGCA 60.069 47.619 4.04 0.00 43.02 4.08
778 786 1.971962 CGAAATCGAGCTGTTTTGCAC 59.028 47.619 0.00 0.00 43.02 4.57
779 787 2.601979 CGAAATCGAGCTGTTTTGCACA 60.602 45.455 0.00 0.00 43.02 4.57
780 788 2.405892 AATCGAGCTGTTTTGCACAC 57.594 45.000 0.00 0.00 34.99 3.82
781 789 1.597742 ATCGAGCTGTTTTGCACACT 58.402 45.000 0.00 0.00 34.99 3.55
782 790 0.657312 TCGAGCTGTTTTGCACACTG 59.343 50.000 0.00 0.00 34.99 3.66
783 791 0.378257 CGAGCTGTTTTGCACACTGT 59.622 50.000 0.00 0.00 34.99 3.55
784 792 1.595489 CGAGCTGTTTTGCACACTGTC 60.595 52.381 0.00 0.00 34.99 3.51
785 793 1.672881 GAGCTGTTTTGCACACTGTCT 59.327 47.619 0.00 0.00 34.99 3.41
786 794 1.402968 AGCTGTTTTGCACACTGTCTG 59.597 47.619 0.00 0.00 34.99 3.51
787 795 1.401552 GCTGTTTTGCACACTGTCTGA 59.598 47.619 0.00 0.00 0.00 3.27
788 796 2.159393 GCTGTTTTGCACACTGTCTGAA 60.159 45.455 0.00 0.00 0.00 3.02
789 797 3.673052 GCTGTTTTGCACACTGTCTGAAA 60.673 43.478 0.00 0.00 0.00 2.69
790 798 4.675510 CTGTTTTGCACACTGTCTGAAAT 58.324 39.130 0.00 0.00 0.00 2.17
791 799 4.422840 TGTTTTGCACACTGTCTGAAATG 58.577 39.130 0.00 0.00 0.00 2.32
792 800 4.082300 TGTTTTGCACACTGTCTGAAATGT 60.082 37.500 0.00 0.00 0.00 2.71
793 801 3.696281 TTGCACACTGTCTGAAATGTG 57.304 42.857 11.02 11.02 44.26 3.21
794 802 2.642427 TGCACACTGTCTGAAATGTGT 58.358 42.857 14.79 10.66 43.51 3.72
795 803 3.802866 TGCACACTGTCTGAAATGTGTA 58.197 40.909 14.79 9.99 43.51 2.90
796 804 3.559655 TGCACACTGTCTGAAATGTGTAC 59.440 43.478 14.79 9.33 43.51 2.90
797 805 3.559655 GCACACTGTCTGAAATGTGTACA 59.440 43.478 14.79 0.00 43.51 2.90
798 806 4.035091 GCACACTGTCTGAAATGTGTACAA 59.965 41.667 14.79 0.00 43.51 2.41
799 807 5.501715 CACACTGTCTGAAATGTGTACAAC 58.498 41.667 0.00 0.00 41.04 3.32
800 808 5.064579 CACACTGTCTGAAATGTGTACAACA 59.935 40.000 0.00 0.00 44.79 3.33
821 829 9.003658 ACAACATCTTATAAAAGTGAACAGAGG 57.996 33.333 0.00 0.00 34.13 3.69
822 830 8.454106 CAACATCTTATAAAAGTGAACAGAGGG 58.546 37.037 0.00 0.00 34.13 4.30
823 831 7.918076 ACATCTTATAAAAGTGAACAGAGGGA 58.082 34.615 0.00 0.00 34.13 4.20
824 832 8.043710 ACATCTTATAAAAGTGAACAGAGGGAG 58.956 37.037 0.00 0.00 34.13 4.30
825 833 7.554959 TCTTATAAAAGTGAACAGAGGGAGT 57.445 36.000 0.00 0.00 34.13 3.85
826 834 8.660295 TCTTATAAAAGTGAACAGAGGGAGTA 57.340 34.615 0.00 0.00 34.13 2.59
827 835 8.750298 TCTTATAAAAGTGAACAGAGGGAGTAG 58.250 37.037 0.00 0.00 34.13 2.57
828 836 6.936968 ATAAAAGTGAACAGAGGGAGTAGT 57.063 37.500 0.00 0.00 0.00 2.73
829 837 9.537852 TTATAAAAGTGAACAGAGGGAGTAGTA 57.462 33.333 0.00 0.00 0.00 1.82
830 838 6.742559 AAAAGTGAACAGAGGGAGTAGTAA 57.257 37.500 0.00 0.00 0.00 2.24
831 839 6.742559 AAAGTGAACAGAGGGAGTAGTAAA 57.257 37.500 0.00 0.00 0.00 2.01
832 840 5.986501 AGTGAACAGAGGGAGTAGTAAAG 57.013 43.478 0.00 0.00 0.00 1.85
833 841 5.642165 AGTGAACAGAGGGAGTAGTAAAGA 58.358 41.667 0.00 0.00 0.00 2.52
834 842 5.477637 AGTGAACAGAGGGAGTAGTAAAGAC 59.522 44.000 0.00 0.00 0.00 3.01
835 843 4.771054 TGAACAGAGGGAGTAGTAAAGACC 59.229 45.833 0.00 0.00 0.00 3.85
836 844 3.354467 ACAGAGGGAGTAGTAAAGACCG 58.646 50.000 0.00 0.00 0.00 4.79
837 845 2.099427 CAGAGGGAGTAGTAAAGACCGC 59.901 54.545 0.00 0.00 0.00 5.68
838 846 2.097825 GAGGGAGTAGTAAAGACCGCA 58.902 52.381 0.00 0.00 0.00 5.69
839 847 2.494870 GAGGGAGTAGTAAAGACCGCAA 59.505 50.000 0.00 0.00 0.00 4.85
840 848 3.105283 AGGGAGTAGTAAAGACCGCAAT 58.895 45.455 0.00 0.00 0.00 3.56
841 849 3.518303 AGGGAGTAGTAAAGACCGCAATT 59.482 43.478 0.00 0.00 0.00 2.32
842 850 3.869832 GGGAGTAGTAAAGACCGCAATTC 59.130 47.826 0.00 0.00 0.00 2.17
843 851 3.550678 GGAGTAGTAAAGACCGCAATTCG 59.449 47.826 0.00 0.00 38.08 3.34
844 852 4.171754 GAGTAGTAAAGACCGCAATTCGT 58.828 43.478 0.00 0.00 36.19 3.85
845 853 5.314923 AGTAGTAAAGACCGCAATTCGTA 57.685 39.130 0.00 0.00 36.19 3.43
846 854 5.713025 AGTAGTAAAGACCGCAATTCGTAA 58.287 37.500 0.00 0.00 36.19 3.18
847 855 6.158598 AGTAGTAAAGACCGCAATTCGTAAA 58.841 36.000 0.00 0.00 36.19 2.01
848 856 5.927954 AGTAAAGACCGCAATTCGTAAAA 57.072 34.783 0.00 0.00 36.19 1.52
849 857 6.303021 AGTAAAGACCGCAATTCGTAAAAA 57.697 33.333 0.00 0.00 36.19 1.94
850 858 6.905578 AGTAAAGACCGCAATTCGTAAAAAT 58.094 32.000 0.00 0.00 36.19 1.82
851 859 6.799925 AGTAAAGACCGCAATTCGTAAAAATG 59.200 34.615 0.00 0.00 36.19 2.32
852 860 4.091453 AGACCGCAATTCGTAAAAATGG 57.909 40.909 0.00 0.00 36.19 3.16
853 861 3.754323 AGACCGCAATTCGTAAAAATGGA 59.246 39.130 0.00 0.00 36.19 3.41
854 862 3.828786 ACCGCAATTCGTAAAAATGGAC 58.171 40.909 0.00 0.00 36.19 4.02
855 863 3.253677 ACCGCAATTCGTAAAAATGGACA 59.746 39.130 0.00 0.00 36.19 4.02
856 864 4.230657 CCGCAATTCGTAAAAATGGACAA 58.769 39.130 0.00 0.00 36.19 3.18
857 865 4.681942 CCGCAATTCGTAAAAATGGACAAA 59.318 37.500 0.00 0.00 36.19 2.83
858 866 5.175856 CCGCAATTCGTAAAAATGGACAAAA 59.824 36.000 0.00 0.00 36.19 2.44
859 867 6.128688 CCGCAATTCGTAAAAATGGACAAAAT 60.129 34.615 0.00 0.00 36.19 1.82
860 868 6.731505 CGCAATTCGTAAAAATGGACAAAATG 59.268 34.615 0.00 0.00 0.00 2.32
861 869 7.568497 CGCAATTCGTAAAAATGGACAAAATGT 60.568 33.333 0.00 0.00 0.00 2.71
880 888 6.836577 AATGTAAACATTTTGAACAACCCG 57.163 33.333 2.47 0.00 43.48 5.28
897 905 1.006220 CGAAAGTTTGCAAGGGGGC 60.006 57.895 0.00 0.00 0.00 5.80
898 906 1.006220 GAAAGTTTGCAAGGGGGCG 60.006 57.895 0.00 0.00 36.28 6.13
899 907 1.744320 GAAAGTTTGCAAGGGGGCGT 61.744 55.000 0.00 0.00 36.28 5.68
940 949 1.194098 CAGTCACAAGAAGCGAGCAAG 59.806 52.381 0.00 0.00 0.00 4.01
1115 1127 2.971452 GACCTCGCCGGAGTTCTT 59.029 61.111 5.05 0.00 38.70 2.52
1420 1442 1.825474 ACACCGTCTCCTTGGTATCTG 59.175 52.381 0.00 0.00 36.50 2.90
1427 1449 1.152881 CCTTGGTATCTGCTGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
1515 1537 6.418057 TTTCTAGGGTTAACGGTTTCAGTA 57.582 37.500 0.00 0.00 0.00 2.74
1516 1538 5.391312 TCTAGGGTTAACGGTTTCAGTAC 57.609 43.478 0.00 0.00 0.00 2.73
1517 1539 4.832266 TCTAGGGTTAACGGTTTCAGTACA 59.168 41.667 0.00 0.00 0.00 2.90
1518 1540 4.420522 AGGGTTAACGGTTTCAGTACAA 57.579 40.909 0.00 0.00 0.00 2.41
1519 1541 4.779696 AGGGTTAACGGTTTCAGTACAAA 58.220 39.130 0.00 0.00 0.00 2.83
1520 1542 5.379187 AGGGTTAACGGTTTCAGTACAAAT 58.621 37.500 0.00 0.00 0.00 2.32
1521 1543 6.532826 AGGGTTAACGGTTTCAGTACAAATA 58.467 36.000 0.00 0.00 0.00 1.40
1522 1544 7.170277 AGGGTTAACGGTTTCAGTACAAATAT 58.830 34.615 0.00 0.00 0.00 1.28
1523 1545 7.666804 AGGGTTAACGGTTTCAGTACAAATATT 59.333 33.333 0.00 0.00 0.00 1.28
1524 1546 7.751793 GGGTTAACGGTTTCAGTACAAATATTG 59.248 37.037 0.00 0.00 0.00 1.90
1536 1558 7.040823 TCAGTACAAATATTGTTCATGTGTGCA 60.041 33.333 0.54 0.00 42.22 4.57
1601 1623 1.054231 TGTTGCCCATTTGAATGCCA 58.946 45.000 0.00 0.00 35.08 4.92
1604 1626 2.181954 TGCCCATTTGAATGCCAAAC 57.818 45.000 0.00 0.00 46.41 2.93
1661 1683 1.354031 GTTGCCCAAAATTTCCCCCAT 59.646 47.619 0.00 0.00 0.00 4.00
1675 1697 3.700538 TCCCCCATCTGAAGAACAATTG 58.299 45.455 3.24 3.24 0.00 2.32
1682 1704 6.430925 CCCATCTGAAGAACAATTGAGTGTTA 59.569 38.462 13.59 0.00 41.78 2.41
1700 1722 4.013728 TGTTATCCCCACAGAATTTTCCG 58.986 43.478 0.00 0.00 0.00 4.30
1736 1758 9.771534 ACCTATGCTAGTTTCTTGATATTCTTC 57.228 33.333 0.00 0.00 0.00 2.87
1739 1761 7.545362 TGCTAGTTTCTTGATATTCTTCAGC 57.455 36.000 0.00 0.00 0.00 4.26
1758 1780 1.681264 GCTTGCCTTTAGTGTTGTGGT 59.319 47.619 0.00 0.00 0.00 4.16
1761 1783 3.791973 TGCCTTTAGTGTTGTGGTTTG 57.208 42.857 0.00 0.00 0.00 2.93
1798 1820 4.517952 TGTTTCTGCAATGTGGTAATGG 57.482 40.909 0.00 0.00 0.00 3.16
1816 1838 1.428912 TGGACTGAGGGATTGCCTTTT 59.571 47.619 0.00 0.00 0.00 2.27
1834 1856 7.145323 TGCCTTTTGTTATTCTGAAGTTAAGC 58.855 34.615 0.00 0.00 0.00 3.09
1864 1901 5.860941 TTGATTTGAGCTTTGTGGGTTAA 57.139 34.783 0.00 0.00 0.00 2.01
1972 2010 4.705507 AGTGATGCTGCTTCTTCAATTGAT 59.294 37.500 9.40 0.00 0.00 2.57
1984 2022 4.808895 TCTTCAATTGATACAATCCGGTCG 59.191 41.667 9.40 0.00 0.00 4.79
1985 2023 4.131649 TCAATTGATACAATCCGGTCGT 57.868 40.909 3.38 0.00 0.00 4.34
2098 2136 3.944015 GGCGACTACTTAGAGTGGTAAGA 59.056 47.826 0.00 0.00 40.15 2.10
2115 2153 0.886563 AGATTGCTGCAAGTTGCTCC 59.113 50.000 27.17 17.96 45.31 4.70
2157 2195 9.444600 TTTCTGTCTTGATAGTAATTGTAACCC 57.555 33.333 0.00 0.00 0.00 4.11
2159 2197 6.342906 TGTCTTGATAGTAATTGTAACCCGG 58.657 40.000 0.00 0.00 0.00 5.73
2164 2202 5.599656 TGATAGTAATTGTAACCCGGCTACT 59.400 40.000 11.82 4.17 0.00 2.57
2289 2330 1.985159 ACAAGGGCATGTAAGTCCTGA 59.015 47.619 0.00 0.00 44.49 3.86
2312 2353 1.750399 GCTGGCGTTGGTCATCCAT 60.750 57.895 0.00 0.00 43.91 3.41
2414 2455 6.015350 TCTGATATCCCCAAGACGAAATAGTC 60.015 42.308 0.00 0.00 41.23 2.59
2580 2621 5.091431 GCTTTGTGCACTATTTGAGATCAC 58.909 41.667 19.41 0.00 42.31 3.06
2757 2798 0.391597 GGTGTCAACAGAGGGTCGAA 59.608 55.000 0.00 0.00 0.00 3.71
2783 2824 8.502105 AAAACTTATAAAATGTACTCCCTCCG 57.498 34.615 0.00 0.00 0.00 4.63
2786 2827 6.610425 ACTTATAAAATGTACTCCCTCCGTCT 59.390 38.462 0.00 0.00 0.00 4.18
2797 2838 4.960469 ACTCCCTCCGTCTCATAATGTAAA 59.040 41.667 0.00 0.00 0.00 2.01
2798 2839 5.163437 ACTCCCTCCGTCTCATAATGTAAAC 60.163 44.000 0.00 0.00 0.00 2.01
2830 2888 6.891388 ACACTAATTACATTATGGGACGGAA 58.109 36.000 0.00 0.00 0.00 4.30
2880 2938 4.670896 AACTGTTTTTGGTGGAGAATGG 57.329 40.909 0.00 0.00 0.00 3.16
2887 2945 5.885449 TTTTGGTGGAGAATGGTTTGATT 57.115 34.783 0.00 0.00 0.00 2.57
2916 2976 9.914131 ATTCTTTTTGTATTTGTAAGAAGGCTC 57.086 29.630 0.00 0.00 37.99 4.70
2985 3047 0.539438 TGGCCCAGTTGGTTGATGTC 60.539 55.000 0.00 0.00 36.04 3.06
3004 3066 7.402054 TGATGTCCACAGAAGGTTAACAATAT 58.598 34.615 8.10 0.00 0.00 1.28
3073 3135 4.202192 TGCTGTTGTTATTTGTGGATTGCA 60.202 37.500 0.00 0.00 0.00 4.08
3077 3139 5.982516 TGTTGTTATTTGTGGATTGCAACTC 59.017 36.000 0.00 0.50 36.78 3.01
3113 3175 5.530171 CCATGAGAACTGATTATTCCAGGTG 59.470 44.000 0.00 0.00 36.03 4.00
3151 3213 1.077265 CAACCAAGCCCCACCATCT 59.923 57.895 0.00 0.00 0.00 2.90
3233 3295 3.164268 TGCTGATAACTGCCCACAAAAT 58.836 40.909 0.00 0.00 39.63 1.82
3260 3322 3.512516 GCGCTGGTTGATGCCCTC 61.513 66.667 0.00 0.00 0.00 4.30
3350 3412 5.114081 CGCCAGATATGCATCATCTTATCA 58.886 41.667 0.19 0.00 33.21 2.15
3374 3436 1.503091 CTTGCTACGCTGCATGCAA 59.497 52.632 22.88 18.06 42.96 4.08
3474 3536 1.888436 CTCCGGCAGCCAGTAGTGAA 61.888 60.000 13.30 0.00 0.00 3.18
3499 3562 5.013704 TCACCCTAGTTCAATGGTATGTGTT 59.986 40.000 0.00 0.00 0.00 3.32
3562 3626 3.388024 ACACTTTTACTGCTGTGGAGAGA 59.612 43.478 6.48 0.00 35.02 3.10
3580 3644 2.562298 GAGATTGGGTTGGCATTGAACA 59.438 45.455 0.00 0.00 0.00 3.18
3616 3680 7.938490 TGCTCCTTTATTTGCATCATATCAGTA 59.062 33.333 0.00 0.00 0.00 2.74
3640 3704 4.876107 ACTGCAATCTACCTTGTATTTCCG 59.124 41.667 0.00 0.00 0.00 4.30
3749 3849 6.985653 ATGTCATGCATCTAGTTAGGTAGT 57.014 37.500 0.00 0.00 30.67 2.73
3755 3855 6.145338 TGCATCTAGTTAGGTAGTTACAGC 57.855 41.667 0.00 0.00 0.00 4.40
3922 4023 2.250924 CCACTCTGGGGCAAAGAAAAT 58.749 47.619 0.00 0.00 32.67 1.82
3930 4031 7.831690 ACTCTGGGGCAAAGAAAATTTTAAAAA 59.168 29.630 4.44 0.00 0.00 1.94
3934 4035 6.695278 GGGGCAAAGAAAATTTTAAAAACTGC 59.305 34.615 4.44 7.25 0.00 4.40
4002 4103 0.401738 CCTTTTCCTGTCTCTGGCCA 59.598 55.000 4.71 4.71 0.00 5.36
4029 4130 2.049063 ACTGTTCGAGCTGGCGTC 60.049 61.111 10.68 0.00 0.00 5.19
4119 4223 0.620030 TATCAAGAGCAGCAGGGCAA 59.380 50.000 0.00 0.00 35.83 4.52
4135 4239 1.237285 GCAACCACGAGAACATGCCT 61.237 55.000 0.00 0.00 0.00 4.75
4182 4286 2.601367 TTTGCTGCTTGCCCCCTC 60.601 61.111 0.00 0.00 42.00 4.30
4183 4287 4.684134 TTGCTGCTTGCCCCCTCC 62.684 66.667 0.00 0.00 42.00 4.30
4257 4361 1.011451 GCCGGCATCTCGCTAGATTC 61.011 60.000 24.80 0.00 40.65 2.52
4259 4363 0.600557 CGGCATCTCGCTAGATTCCT 59.399 55.000 13.62 0.00 41.79 3.36
4306 4410 1.101635 CCTCCATCAGGCTGCACATG 61.102 60.000 10.34 8.64 34.56 3.21
4308 4412 0.393402 TCCATCAGGCTGCACATGTC 60.393 55.000 10.34 0.00 33.74 3.06
4310 4414 0.450583 CATCAGGCTGCACATGTCAC 59.549 55.000 10.34 0.00 0.00 3.67
4311 4415 0.037160 ATCAGGCTGCACATGTCACA 59.963 50.000 10.34 0.00 0.00 3.58
4312 4416 0.179023 TCAGGCTGCACATGTCACAA 60.179 50.000 10.34 0.00 0.00 3.33
4313 4417 0.885879 CAGGCTGCACATGTCACAAT 59.114 50.000 0.00 0.00 0.00 2.71
4314 4418 1.271379 CAGGCTGCACATGTCACAATT 59.729 47.619 0.00 0.00 0.00 2.32
4317 4421 2.322161 GCTGCACATGTCACAATTCAC 58.678 47.619 0.00 0.00 0.00 3.18
4318 4422 2.287728 GCTGCACATGTCACAATTCACA 60.288 45.455 0.00 0.00 0.00 3.58
4319 4423 3.796165 GCTGCACATGTCACAATTCACAA 60.796 43.478 0.00 0.00 0.00 3.33
4322 4426 3.732219 GCACATGTCACAATTCACAAGTG 59.268 43.478 0.00 10.58 42.46 3.16
4336 4444 2.642427 ACAAGTGTTGTGCATCAGTGA 58.358 42.857 0.00 0.00 43.48 3.41
4343 4451 4.455533 GTGTTGTGCATCAGTGAGGAATTA 59.544 41.667 9.40 0.00 0.00 1.40
4344 4452 4.455533 TGTTGTGCATCAGTGAGGAATTAC 59.544 41.667 9.40 1.31 0.00 1.89
4345 4453 3.261580 TGTGCATCAGTGAGGAATTACG 58.738 45.455 9.40 0.00 0.00 3.18
4346 4454 2.609459 GTGCATCAGTGAGGAATTACGG 59.391 50.000 9.40 0.00 0.00 4.02
4347 4455 2.499693 TGCATCAGTGAGGAATTACGGA 59.500 45.455 9.40 0.00 0.00 4.69
4348 4456 2.866762 GCATCAGTGAGGAATTACGGAC 59.133 50.000 9.40 0.00 0.00 4.79
4349 4457 2.933495 TCAGTGAGGAATTACGGACG 57.067 50.000 0.00 0.00 0.00 4.79
4350 4458 1.475280 TCAGTGAGGAATTACGGACGG 59.525 52.381 0.00 0.00 0.00 4.79
4351 4459 1.475280 CAGTGAGGAATTACGGACGGA 59.525 52.381 0.00 0.00 0.00 4.69
4352 4460 2.100916 CAGTGAGGAATTACGGACGGAT 59.899 50.000 0.00 0.00 0.00 4.18
4353 4461 2.100916 AGTGAGGAATTACGGACGGATG 59.899 50.000 0.00 0.00 0.00 3.51
4354 4462 1.411246 TGAGGAATTACGGACGGATGG 59.589 52.381 0.00 0.00 0.00 3.51
4355 4463 1.684983 GAGGAATTACGGACGGATGGA 59.315 52.381 0.00 0.00 0.00 3.41
4356 4464 1.411612 AGGAATTACGGACGGATGGAC 59.588 52.381 0.00 0.00 0.00 4.02
4358 4466 2.224209 GGAATTACGGACGGATGGACAT 60.224 50.000 0.00 0.00 0.00 3.06
4359 4467 2.526304 ATTACGGACGGATGGACATG 57.474 50.000 0.00 0.00 0.00 3.21
4360 4468 0.462375 TTACGGACGGATGGACATGG 59.538 55.000 0.00 0.00 0.00 3.66
4361 4469 0.396001 TACGGACGGATGGACATGGA 60.396 55.000 0.00 0.00 0.00 3.41
4362 4470 1.227263 CGGACGGATGGACATGGAC 60.227 63.158 0.00 0.00 0.00 4.02
4363 4471 1.227263 GGACGGATGGACATGGACG 60.227 63.158 0.00 0.00 0.00 4.79
4364 4472 1.515954 GACGGATGGACATGGACGT 59.484 57.895 0.00 0.00 37.26 4.34
4365 4473 0.806102 GACGGATGGACATGGACGTG 60.806 60.000 0.00 0.00 34.43 4.49
4366 4474 2.173669 CGGATGGACATGGACGTGC 61.174 63.158 0.00 0.00 0.00 5.34
4367 4475 1.078497 GGATGGACATGGACGTGCA 60.078 57.895 13.59 13.59 41.74 4.57
4369 4477 0.659427 GATGGACATGGACGTGCATG 59.341 55.000 38.36 38.36 46.50 4.06
4374 4482 1.393539 GACATGGACGTGCATGTGTAC 59.606 52.381 46.31 32.65 41.53 2.90
4375 4483 1.270571 ACATGGACGTGCATGTGTACA 60.271 47.619 42.59 12.81 40.16 2.90
4376 4484 1.803555 CATGGACGTGCATGTGTACAA 59.196 47.619 34.05 1.00 31.52 2.41
4377 4485 2.177394 TGGACGTGCATGTGTACAAT 57.823 45.000 18.17 0.00 0.00 2.71
4379 4487 1.465689 GGACGTGCATGTGTACAATGC 60.466 52.381 18.17 24.22 41.35 3.56
4386 4499 4.297510 TGCATGTGTACAATGCAAAAGAC 58.702 39.130 28.10 10.47 46.73 3.01
4388 4501 2.993545 TGTGTACAATGCAAAAGACGC 58.006 42.857 0.00 0.00 0.00 5.19
4393 4506 1.059657 CAATGCAAAAGACGCGACCG 61.060 55.000 15.93 0.00 41.14 4.79
4396 4509 1.225376 TGCAAAAGACGCGACCGAAT 61.225 50.000 15.93 0.00 38.29 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.299141 AGAGCTCATTCTAGTTGTCCAAAAA 58.701 36.000 17.77 0.00 0.00 1.94
43 44 5.078411 TGACACTTCTATTTGGAGAGCTC 57.922 43.478 5.27 5.27 0.00 4.09
109 110 4.363991 ACTTGGAGAATTGCTCAAGACT 57.636 40.909 14.39 0.00 45.81 3.24
130 131 3.597255 CAGAGCTTGATTCTCTCTGCAA 58.403 45.455 13.86 0.00 44.71 4.08
184 185 5.843673 TTGCATTGACAAGAAAAGTGGTA 57.156 34.783 0.00 0.00 0.00 3.25
201 202 2.369532 GGGCATGGGTTGATATTTGCAT 59.630 45.455 0.00 0.00 0.00 3.96
212 213 1.901833 CTTTGCTTAAGGGCATGGGTT 59.098 47.619 4.29 0.00 42.09 4.11
240 241 9.178758 GACAGGGATAAAAGATGATAACACTTT 57.821 33.333 0.00 0.00 35.74 2.66
274 276 8.663209 AGTATCACTGCTATCATTAGGAGATT 57.337 34.615 8.30 0.00 44.35 2.40
285 287 4.876125 TGCTTGCTAGTATCACTGCTATC 58.124 43.478 0.00 0.00 0.00 2.08
407 413 8.823220 AAATCCAAGCTTACAATGTATAAGGT 57.177 30.769 0.00 0.00 41.05 3.50
443 449 3.005554 CTGTTGCTTACTCATCTGTGGG 58.994 50.000 0.00 0.00 0.00 4.61
449 455 5.069781 AGGATAGGTCTGTTGCTTACTCATC 59.930 44.000 0.00 0.00 0.00 2.92
499 505 7.500227 TGATATCGGCATCTCTTTCTTCATTTT 59.500 33.333 0.00 0.00 0.00 1.82
505 511 4.262808 CCCTGATATCGGCATCTCTTTCTT 60.263 45.833 5.98 0.00 0.00 2.52
507 513 3.259374 TCCCTGATATCGGCATCTCTTTC 59.741 47.826 5.98 0.00 0.00 2.62
514 521 0.979665 CCTGTCCCTGATATCGGCAT 59.020 55.000 5.98 0.00 0.00 4.40
515 522 0.105709 TCCTGTCCCTGATATCGGCA 60.106 55.000 5.98 0.00 0.00 5.69
517 524 2.434336 TGTTTCCTGTCCCTGATATCGG 59.566 50.000 4.40 4.40 0.00 4.18
545 553 1.327303 TGCAGCTCAAACGGGAAATT 58.673 45.000 0.00 0.00 0.00 1.82
552 560 2.730069 TGTTGATTTGCAGCTCAAACG 58.270 42.857 12.86 0.00 46.36 3.60
555 563 5.710513 ACTAATGTTGATTTGCAGCTCAA 57.289 34.783 8.48 8.48 0.00 3.02
610 618 1.266989 GTTCCCTTTCAGGCAAAGTCG 59.733 52.381 0.00 0.00 40.15 4.18
616 624 3.708631 TCATTTTTGTTCCCTTTCAGGCA 59.291 39.130 0.00 0.00 32.73 4.75
698 706 9.988815 GGAGTACTAATGATGTTTACAGATGAT 57.011 33.333 0.00 0.00 0.00 2.45
706 714 5.895534 ACGGAGGGAGTACTAATGATGTTTA 59.104 40.000 0.00 0.00 0.00 2.01
715 723 5.750352 AAAATGAACGGAGGGAGTACTAA 57.250 39.130 0.00 0.00 0.00 2.24
716 724 5.750352 AAAAATGAACGGAGGGAGTACTA 57.250 39.130 0.00 0.00 0.00 1.82
717 725 4.635699 AAAAATGAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
718 726 7.767659 ACTTATAAAAATGAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
719 727 7.854337 ACTTATAAAAATGAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
720 728 6.718294 ACTTATAAAAATGAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
721 729 6.018994 CGACTTATAAAAATGAACGGAGGGAG 60.019 42.308 0.00 0.00 0.00 4.30
722 730 5.813672 CGACTTATAAAAATGAACGGAGGGA 59.186 40.000 0.00 0.00 0.00 4.20
723 731 5.583457 ACGACTTATAAAAATGAACGGAGGG 59.417 40.000 0.00 0.00 0.00 4.30
724 732 6.657836 ACGACTTATAAAAATGAACGGAGG 57.342 37.500 0.00 0.00 0.00 4.30
725 733 8.225107 TGAAACGACTTATAAAAATGAACGGAG 58.775 33.333 0.00 0.00 0.00 4.63
726 734 8.085720 TGAAACGACTTATAAAAATGAACGGA 57.914 30.769 0.00 0.00 0.00 4.69
727 735 8.225107 TCTGAAACGACTTATAAAAATGAACGG 58.775 33.333 0.00 0.00 0.00 4.44
728 736 9.037417 GTCTGAAACGACTTATAAAAATGAACG 57.963 33.333 0.00 0.00 0.00 3.95
729 737 9.872757 TGTCTGAAACGACTTATAAAAATGAAC 57.127 29.630 0.00 0.00 35.00 3.18
731 739 9.872757 GTTGTCTGAAACGACTTATAAAAATGA 57.127 29.630 0.00 0.00 38.97 2.57
732 740 9.113876 GGTTGTCTGAAACGACTTATAAAAATG 57.886 33.333 0.00 0.00 41.42 2.32
733 741 8.013378 CGGTTGTCTGAAACGACTTATAAAAAT 58.987 33.333 0.00 0.00 41.42 1.82
734 742 7.224362 TCGGTTGTCTGAAACGACTTATAAAAA 59.776 33.333 0.00 0.00 41.42 1.94
735 743 6.700960 TCGGTTGTCTGAAACGACTTATAAAA 59.299 34.615 0.00 0.00 41.42 1.52
736 744 6.215121 TCGGTTGTCTGAAACGACTTATAAA 58.785 36.000 0.00 0.00 41.42 1.40
737 745 5.771469 TCGGTTGTCTGAAACGACTTATAA 58.229 37.500 0.00 0.00 41.42 0.98
738 746 5.375417 TCGGTTGTCTGAAACGACTTATA 57.625 39.130 0.00 0.00 41.42 0.98
739 747 4.247267 TCGGTTGTCTGAAACGACTTAT 57.753 40.909 0.00 0.00 41.42 1.73
740 748 3.713858 TCGGTTGTCTGAAACGACTTA 57.286 42.857 0.00 0.00 41.42 2.24
741 749 2.589798 TCGGTTGTCTGAAACGACTT 57.410 45.000 0.00 0.00 41.42 3.01
742 750 2.589798 TTCGGTTGTCTGAAACGACT 57.410 45.000 0.00 0.00 41.42 4.18
748 756 2.066262 GCTCGATTTCGGTTGTCTGAA 58.934 47.619 0.00 0.00 40.29 3.02
749 757 1.272490 AGCTCGATTTCGGTTGTCTGA 59.728 47.619 0.00 0.00 40.29 3.27
750 758 1.391485 CAGCTCGATTTCGGTTGTCTG 59.609 52.381 0.00 0.00 40.29 3.51
751 759 1.000955 ACAGCTCGATTTCGGTTGTCT 59.999 47.619 0.00 0.00 40.29 3.41
752 760 1.429463 ACAGCTCGATTTCGGTTGTC 58.571 50.000 0.00 0.00 40.29 3.18
753 761 1.878953 AACAGCTCGATTTCGGTTGT 58.121 45.000 0.00 3.19 40.29 3.32
754 762 2.969443 AAACAGCTCGATTTCGGTTG 57.031 45.000 0.00 2.62 40.29 3.77
755 763 2.604614 GCAAAACAGCTCGATTTCGGTT 60.605 45.455 0.00 0.00 40.29 4.44
756 764 1.069227 GCAAAACAGCTCGATTTCGGT 60.069 47.619 0.00 0.00 40.29 4.69
757 765 1.069296 TGCAAAACAGCTCGATTTCGG 60.069 47.619 0.00 0.00 40.29 4.30
758 766 1.971962 GTGCAAAACAGCTCGATTTCG 59.028 47.619 0.00 0.00 41.45 3.46
759 767 2.721090 GTGTGCAAAACAGCTCGATTTC 59.279 45.455 0.00 0.00 40.26 2.17
760 768 2.358898 AGTGTGCAAAACAGCTCGATTT 59.641 40.909 0.00 0.00 40.26 2.17
761 769 1.949525 AGTGTGCAAAACAGCTCGATT 59.050 42.857 0.00 0.00 40.26 3.34
762 770 1.265095 CAGTGTGCAAAACAGCTCGAT 59.735 47.619 0.00 0.00 40.26 3.59
763 771 0.657312 CAGTGTGCAAAACAGCTCGA 59.343 50.000 0.00 0.00 40.26 4.04
764 772 0.378257 ACAGTGTGCAAAACAGCTCG 59.622 50.000 0.00 0.00 40.26 5.03
765 773 1.672881 AGACAGTGTGCAAAACAGCTC 59.327 47.619 0.00 0.00 40.26 4.09
766 774 1.402968 CAGACAGTGTGCAAAACAGCT 59.597 47.619 0.00 0.00 40.26 4.24
767 775 1.401552 TCAGACAGTGTGCAAAACAGC 59.598 47.619 0.00 0.00 40.26 4.40
768 776 3.763097 TTCAGACAGTGTGCAAAACAG 57.237 42.857 0.00 0.00 40.26 3.16
769 777 4.082300 ACATTTCAGACAGTGTGCAAAACA 60.082 37.500 0.00 0.00 36.04 2.83
770 778 4.266029 CACATTTCAGACAGTGTGCAAAAC 59.734 41.667 0.00 0.00 36.01 2.43
771 779 4.082300 ACACATTTCAGACAGTGTGCAAAA 60.082 37.500 0.00 0.00 44.27 2.44
772 780 3.443329 ACACATTTCAGACAGTGTGCAAA 59.557 39.130 0.00 0.00 44.27 3.68
773 781 3.016031 ACACATTTCAGACAGTGTGCAA 58.984 40.909 0.00 0.00 44.27 4.08
774 782 2.642427 ACACATTTCAGACAGTGTGCA 58.358 42.857 0.00 0.00 44.27 4.57
775 783 3.559655 TGTACACATTTCAGACAGTGTGC 59.440 43.478 0.00 6.51 44.21 4.57
776 784 5.064579 TGTTGTACACATTTCAGACAGTGTG 59.935 40.000 0.00 8.89 44.21 3.82
777 785 5.182487 TGTTGTACACATTTCAGACAGTGT 58.818 37.500 0.00 0.00 46.03 3.55
778 786 5.733226 TGTTGTACACATTTCAGACAGTG 57.267 39.130 0.00 0.00 37.95 3.66
779 787 6.291377 AGATGTTGTACACATTTCAGACAGT 58.709 36.000 0.00 0.00 46.96 3.55
780 788 6.791887 AGATGTTGTACACATTTCAGACAG 57.208 37.500 0.00 0.00 46.96 3.51
781 789 8.846943 ATAAGATGTTGTACACATTTCAGACA 57.153 30.769 0.00 0.00 46.96 3.41
795 803 9.003658 CCTCTGTTCACTTTTATAAGATGTTGT 57.996 33.333 0.00 0.00 35.30 3.32
796 804 8.454106 CCCTCTGTTCACTTTTATAAGATGTTG 58.546 37.037 0.00 0.00 35.30 3.33
797 805 8.383175 TCCCTCTGTTCACTTTTATAAGATGTT 58.617 33.333 0.00 0.00 35.30 2.71
798 806 7.918076 TCCCTCTGTTCACTTTTATAAGATGT 58.082 34.615 0.00 0.00 35.30 3.06
799 807 8.043710 ACTCCCTCTGTTCACTTTTATAAGATG 58.956 37.037 0.00 0.00 35.30 2.90
800 808 8.152023 ACTCCCTCTGTTCACTTTTATAAGAT 57.848 34.615 0.00 0.00 35.30 2.40
801 809 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
802 810 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
803 811 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
804 812 9.537852 TTACTACTCCCTCTGTTCACTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
805 813 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
806 814 7.844493 TTACTACTCCCTCTGTTCACTTTTA 57.156 36.000 0.00 0.00 0.00 1.52
807 815 6.742559 TTACTACTCCCTCTGTTCACTTTT 57.257 37.500 0.00 0.00 0.00 2.27
808 816 6.553852 TCTTTACTACTCCCTCTGTTCACTTT 59.446 38.462 0.00 0.00 0.00 2.66
809 817 6.015265 GTCTTTACTACTCCCTCTGTTCACTT 60.015 42.308 0.00 0.00 0.00 3.16
810 818 5.477637 GTCTTTACTACTCCCTCTGTTCACT 59.522 44.000 0.00 0.00 0.00 3.41
811 819 5.336610 GGTCTTTACTACTCCCTCTGTTCAC 60.337 48.000 0.00 0.00 0.00 3.18
812 820 4.771054 GGTCTTTACTACTCCCTCTGTTCA 59.229 45.833 0.00 0.00 0.00 3.18
813 821 4.142425 CGGTCTTTACTACTCCCTCTGTTC 60.142 50.000 0.00 0.00 0.00 3.18
814 822 3.762823 CGGTCTTTACTACTCCCTCTGTT 59.237 47.826 0.00 0.00 0.00 3.16
815 823 3.354467 CGGTCTTTACTACTCCCTCTGT 58.646 50.000 0.00 0.00 0.00 3.41
816 824 2.099427 GCGGTCTTTACTACTCCCTCTG 59.901 54.545 0.00 0.00 0.00 3.35
817 825 2.291411 TGCGGTCTTTACTACTCCCTCT 60.291 50.000 0.00 0.00 0.00 3.69
818 826 2.097825 TGCGGTCTTTACTACTCCCTC 58.902 52.381 0.00 0.00 0.00 4.30
819 827 2.226962 TGCGGTCTTTACTACTCCCT 57.773 50.000 0.00 0.00 0.00 4.20
820 828 3.538634 ATTGCGGTCTTTACTACTCCC 57.461 47.619 0.00 0.00 0.00 4.30
821 829 3.550678 CGAATTGCGGTCTTTACTACTCC 59.449 47.826 0.00 0.00 36.03 3.85
822 830 4.171754 ACGAATTGCGGTCTTTACTACTC 58.828 43.478 0.00 0.00 46.49 2.59
823 831 4.184079 ACGAATTGCGGTCTTTACTACT 57.816 40.909 0.00 0.00 46.49 2.57
824 832 6.393720 TTTACGAATTGCGGTCTTTACTAC 57.606 37.500 0.00 0.00 46.49 2.73
825 833 7.418840 TTTTTACGAATTGCGGTCTTTACTA 57.581 32.000 0.00 0.00 46.49 1.82
826 834 5.927954 TTTTACGAATTGCGGTCTTTACT 57.072 34.783 0.00 0.00 46.49 2.24
827 835 6.033091 CCATTTTTACGAATTGCGGTCTTTAC 59.967 38.462 0.00 0.00 46.49 2.01
828 836 6.072618 TCCATTTTTACGAATTGCGGTCTTTA 60.073 34.615 0.00 0.00 46.49 1.85
829 837 4.920927 CCATTTTTACGAATTGCGGTCTTT 59.079 37.500 0.00 0.00 46.49 2.52
830 838 4.216687 TCCATTTTTACGAATTGCGGTCTT 59.783 37.500 0.00 0.00 46.49 3.01
831 839 3.754323 TCCATTTTTACGAATTGCGGTCT 59.246 39.130 0.00 0.00 46.49 3.85
832 840 3.849708 GTCCATTTTTACGAATTGCGGTC 59.150 43.478 0.00 0.00 46.49 4.79
833 841 3.253677 TGTCCATTTTTACGAATTGCGGT 59.746 39.130 0.00 0.00 46.49 5.68
834 842 3.827625 TGTCCATTTTTACGAATTGCGG 58.172 40.909 0.00 0.00 46.49 5.69
836 844 7.571892 ACATTTTGTCCATTTTTACGAATTGC 58.428 30.769 0.00 0.00 29.44 3.56
840 848 9.582431 TGTTTACATTTTGTCCATTTTTACGAA 57.418 25.926 0.00 0.00 0.00 3.85
841 849 9.751542 ATGTTTACATTTTGTCCATTTTTACGA 57.248 25.926 0.00 0.00 31.37 3.43
858 866 6.150396 TCGGGTTGTTCAAAATGTTTACAT 57.850 33.333 0.00 0.00 38.41 2.29
859 867 5.578005 TCGGGTTGTTCAAAATGTTTACA 57.422 34.783 0.00 0.00 0.00 2.41
860 868 6.532302 ACTTTCGGGTTGTTCAAAATGTTTAC 59.468 34.615 0.00 0.00 0.00 2.01
861 869 6.631962 ACTTTCGGGTTGTTCAAAATGTTTA 58.368 32.000 0.00 0.00 0.00 2.01
880 888 1.006220 CGCCCCCTTGCAAACTTTC 60.006 57.895 0.00 0.00 0.00 2.62
897 905 8.026607 ACTGAATTTACAAATTTGTATCCCACG 58.973 33.333 27.14 17.73 42.66 4.94
898 906 9.353999 GACTGAATTTACAAATTTGTATCCCAC 57.646 33.333 27.14 18.30 42.66 4.61
899 907 9.083422 TGACTGAATTTACAAATTTGTATCCCA 57.917 29.630 27.14 20.40 42.66 4.37
940 949 0.606604 TCGAGGGGTGCTTTCACTAC 59.393 55.000 0.00 0.00 42.72 2.73
1427 1449 3.321497 CGAGAAAGTGAAGAGACAAGGG 58.679 50.000 0.00 0.00 0.00 3.95
1516 1538 9.666626 AAAATTTGCACACATGAACAATATTTG 57.333 25.926 0.00 0.00 0.00 2.32
1518 1540 9.666626 CAAAAATTTGCACACATGAACAATATT 57.333 25.926 0.00 0.00 0.00 1.28
1536 1558 3.132646 TCTGCAGTGAGTGGCAAAAATTT 59.867 39.130 14.67 0.00 39.93 1.82
1601 1623 5.949354 TCCATTTCTTCATGTATTCGGGTTT 59.051 36.000 0.00 0.00 0.00 3.27
1604 1626 4.881273 TGTCCATTTCTTCATGTATTCGGG 59.119 41.667 0.00 0.00 0.00 5.14
1661 1683 6.655003 GGGATAACACTCAATTGTTCTTCAGA 59.345 38.462 5.13 0.00 40.29 3.27
1675 1697 5.125578 GGAAAATTCTGTGGGGATAACACTC 59.874 44.000 0.00 0.00 39.52 3.51
1682 1704 2.899303 ACGGAAAATTCTGTGGGGAT 57.101 45.000 6.82 0.00 44.70 3.85
1736 1758 2.287788 CCACAACACTAAAGGCAAGCTG 60.288 50.000 0.00 0.00 0.00 4.24
1739 1761 4.111916 CAAACCACAACACTAAAGGCAAG 58.888 43.478 0.00 0.00 0.00 4.01
1758 1780 8.010733 AGAAACAACTTCTGGAATTCATCAAA 57.989 30.769 7.93 0.00 43.09 2.69
1798 1820 2.519013 ACAAAAGGCAATCCCTCAGTC 58.481 47.619 0.00 0.00 45.62 3.51
1816 1838 9.555727 AACTACAAGCTTAACTTCAGAATAACA 57.444 29.630 0.00 0.00 36.04 2.41
1834 1856 6.418819 CCACAAAGCTCAAATCAAACTACAAG 59.581 38.462 0.00 0.00 0.00 3.16
1893 1931 3.814504 ACAAGTCAATCCCCAGTTCAT 57.185 42.857 0.00 0.00 0.00 2.57
1972 2010 0.390603 CAGCCAACGACCGGATTGTA 60.391 55.000 9.46 0.00 0.00 2.41
1984 2022 1.461127 CTCGTTTCAGTAGCAGCCAAC 59.539 52.381 0.00 0.00 0.00 3.77
1985 2023 1.343142 TCTCGTTTCAGTAGCAGCCAA 59.657 47.619 0.00 0.00 0.00 4.52
2115 2153 6.449698 AGACAGAAAATGTTACCAGCAATTG 58.550 36.000 0.00 0.00 44.17 2.32
2142 2180 6.015095 GGTAGTAGCCGGGTTACAATTACTAT 60.015 42.308 21.04 2.74 0.00 2.12
2156 2194 1.327690 TTCTGCCTGGTAGTAGCCGG 61.328 60.000 11.69 0.00 34.71 6.13
2157 2195 0.535335 TTTCTGCCTGGTAGTAGCCG 59.465 55.000 11.69 0.00 0.00 5.52
2159 2197 2.565841 CCATTTCTGCCTGGTAGTAGC 58.434 52.381 11.69 0.00 0.00 3.58
2164 2202 2.101783 CAATGCCATTTCTGCCTGGTA 58.898 47.619 0.00 0.00 34.86 3.25
2312 2353 4.979335 TGACAAGTGGTGATGTGGAATTA 58.021 39.130 0.00 0.00 0.00 1.40
2717 2758 1.897560 ACCTACTGTGCCTTTTCAGC 58.102 50.000 0.00 0.00 35.37 4.26
2757 2798 8.953313 CGGAGGGAGTACATTTTATAAGTTTTT 58.047 33.333 0.00 0.00 0.00 1.94
2812 2855 4.658901 ACTCCTTCCGTCCCATAATGTAAT 59.341 41.667 0.00 0.00 0.00 1.89
2814 2857 3.649843 ACTCCTTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2815 2858 2.478292 ACTCCTTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2895 2953 7.648142 CAGTGAGCCTTCTTACAAATACAAAA 58.352 34.615 0.00 0.00 31.82 2.44
2896 2954 6.293955 GCAGTGAGCCTTCTTACAAATACAAA 60.294 38.462 0.00 0.00 37.23 2.83
2898 2956 4.695455 GCAGTGAGCCTTCTTACAAATACA 59.305 41.667 0.00 0.00 37.23 2.29
2899 2957 4.695455 TGCAGTGAGCCTTCTTACAAATAC 59.305 41.667 0.00 0.00 44.83 1.89
2901 2959 3.754965 TGCAGTGAGCCTTCTTACAAAT 58.245 40.909 0.00 0.00 44.83 2.32
2907 2967 1.627329 TGAGATGCAGTGAGCCTTCTT 59.373 47.619 0.00 0.00 44.83 2.52
2916 2976 1.718396 ACATGTCGTGAGATGCAGTG 58.282 50.000 6.89 0.00 45.19 3.66
2975 3037 1.774254 ACCTTCTGTGGACATCAACCA 59.226 47.619 0.00 0.00 34.84 3.67
3014 3076 9.589461 AAAGCAGTACTGTACTATATAGGACAT 57.411 33.333 24.97 17.58 45.54 3.06
3045 3107 4.826733 TCCACAAATAACAACAGCAGACAT 59.173 37.500 0.00 0.00 0.00 3.06
3073 3135 5.070001 TCTCATGGAAATCAAAACCGAGTT 58.930 37.500 0.00 0.00 0.00 3.01
3077 3139 5.048782 TCAGTTCTCATGGAAATCAAAACCG 60.049 40.000 0.00 0.00 35.51 4.44
3113 3175 1.068250 GGACCGGCAGTAGATGAGC 59.932 63.158 0.00 0.00 0.00 4.26
3233 3295 1.005512 AACCAGCGCGTCATACACA 60.006 52.632 8.43 0.00 0.00 3.72
3260 3322 1.142185 CGTACTGGCTGACATGCTCG 61.142 60.000 0.00 0.00 0.00 5.03
3374 3436 4.660303 TGCTTGGGTATATCAAGGTCATCT 59.340 41.667 15.80 0.00 41.21 2.90
3459 3521 1.373570 GTGATTCACTACTGGCTGCC 58.626 55.000 12.87 12.87 0.00 4.85
3474 3536 5.191722 ACACATACCATTGAACTAGGGTGAT 59.808 40.000 0.00 0.00 34.88 3.06
3499 3562 2.158769 ACACACAGAACAGGCTTCATGA 60.159 45.455 0.00 0.00 0.00 3.07
3562 3626 2.638855 ACATGTTCAATGCCAACCCAAT 59.361 40.909 0.00 0.00 0.00 3.16
3616 3680 5.354234 CGGAAATACAAGGTAGATTGCAGTT 59.646 40.000 0.00 0.00 33.28 3.16
3749 3849 7.668052 AGGTTAAATTCATGTAAGGTGCTGTAA 59.332 33.333 0.00 0.00 0.00 2.41
3755 3855 9.541143 AAAAACAGGTTAAATTCATGTAAGGTG 57.459 29.630 0.00 0.00 0.00 4.00
4041 4142 2.109126 GGTGCTCATCTTGTCGGCC 61.109 63.158 0.00 0.00 0.00 6.13
4042 4143 2.109126 GGGTGCTCATCTTGTCGGC 61.109 63.158 0.00 0.00 0.00 5.54
4119 4223 1.296715 GGAGGCATGTTCTCGTGGT 59.703 57.895 10.56 0.00 32.34 4.16
4239 4343 0.389166 GGAATCTAGCGAGATGCCGG 60.389 60.000 17.27 0.00 46.32 6.13
4246 4350 2.226437 GAGAGCTCAGGAATCTAGCGAG 59.774 54.545 17.77 0.00 41.19 5.03
4250 4354 4.214310 TCCAAGAGAGCTCAGGAATCTAG 58.786 47.826 17.77 5.20 34.56 2.43
4297 4401 2.287728 TGTGAATTGTGACATGTGCAGC 60.288 45.455 1.15 0.00 0.00 5.25
4317 4421 2.031420 CCTCACTGATGCACAACACTTG 60.031 50.000 0.00 0.00 0.00 3.16
4318 4422 2.158769 TCCTCACTGATGCACAACACTT 60.159 45.455 0.00 0.00 0.00 3.16
4319 4423 1.417517 TCCTCACTGATGCACAACACT 59.582 47.619 0.00 0.00 0.00 3.55
4322 4426 4.436050 CGTAATTCCTCACTGATGCACAAC 60.436 45.833 0.00 0.00 0.00 3.32
4331 4439 1.475280 TCCGTCCGTAATTCCTCACTG 59.525 52.381 0.00 0.00 0.00 3.66
4334 4442 1.411246 CCATCCGTCCGTAATTCCTCA 59.589 52.381 0.00 0.00 0.00 3.86
4335 4443 1.684983 TCCATCCGTCCGTAATTCCTC 59.315 52.381 0.00 0.00 0.00 3.71
4336 4444 1.411612 GTCCATCCGTCCGTAATTCCT 59.588 52.381 0.00 0.00 0.00 3.36
4343 4451 1.684391 TCCATGTCCATCCGTCCGT 60.684 57.895 0.00 0.00 0.00 4.69
4344 4452 1.227263 GTCCATGTCCATCCGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
4345 4453 1.227263 CGTCCATGTCCATCCGTCC 60.227 63.158 0.00 0.00 0.00 4.79
4346 4454 0.806102 CACGTCCATGTCCATCCGTC 60.806 60.000 0.00 0.00 0.00 4.79
4347 4455 1.218047 CACGTCCATGTCCATCCGT 59.782 57.895 0.00 0.00 0.00 4.69
4348 4456 2.173669 GCACGTCCATGTCCATCCG 61.174 63.158 0.00 0.00 0.00 4.18
4349 4457 0.464373 ATGCACGTCCATGTCCATCC 60.464 55.000 0.00 0.00 0.00 3.51
4350 4458 0.659427 CATGCACGTCCATGTCCATC 59.341 55.000 11.46 0.00 38.19 3.51
4351 4459 2.784547 CATGCACGTCCATGTCCAT 58.215 52.632 11.46 0.00 38.19 3.41
4352 4460 4.299756 CATGCACGTCCATGTCCA 57.700 55.556 11.46 0.00 38.19 4.02
4356 4464 1.437625 TGTACACATGCACGTCCATG 58.562 50.000 17.90 17.90 46.19 3.66
4358 4466 1.803555 CATTGTACACATGCACGTCCA 59.196 47.619 0.00 0.00 0.00 4.02
4359 4467 1.465689 GCATTGTACACATGCACGTCC 60.466 52.381 25.20 6.68 40.72 4.79
4360 4468 1.196581 TGCATTGTACACATGCACGTC 59.803 47.619 27.25 10.93 45.14 4.34
4361 4469 1.233919 TGCATTGTACACATGCACGT 58.766 45.000 27.25 0.00 45.14 4.49
4365 4473 3.361644 CGTCTTTTGCATTGTACACATGC 59.638 43.478 24.22 24.22 41.35 4.06
4366 4474 3.361644 GCGTCTTTTGCATTGTACACATG 59.638 43.478 0.00 4.45 0.00 3.21
4367 4475 3.564511 GCGTCTTTTGCATTGTACACAT 58.435 40.909 0.00 0.00 0.00 3.21
4368 4476 2.601029 CGCGTCTTTTGCATTGTACACA 60.601 45.455 0.00 0.00 0.00 3.72
4369 4477 1.969256 CGCGTCTTTTGCATTGTACAC 59.031 47.619 0.00 0.00 0.00 2.90
4374 4482 1.059657 CGGTCGCGTCTTTTGCATTG 61.060 55.000 5.77 0.00 0.00 2.82
4375 4483 1.206578 CGGTCGCGTCTTTTGCATT 59.793 52.632 5.77 0.00 0.00 3.56
4376 4484 1.225376 TTCGGTCGCGTCTTTTGCAT 61.225 50.000 5.77 0.00 0.00 3.96
4377 4485 1.225376 ATTCGGTCGCGTCTTTTGCA 61.225 50.000 5.77 0.00 0.00 4.08
4379 4487 0.789383 GCATTCGGTCGCGTCTTTTG 60.789 55.000 5.77 0.00 0.00 2.44
4393 4506 1.423845 CCAAGTACGCCACGCATTC 59.576 57.895 0.00 0.00 0.00 2.67
4396 4509 4.690719 CCCCAAGTACGCCACGCA 62.691 66.667 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.