Multiple sequence alignment - TraesCS4A01G400900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G400900 chr4A 100.000 3983 0 0 1 3983 674943704 674939722 0.000000e+00 7356.0
1 TraesCS4A01G400900 chr7D 94.127 2588 107 16 768 3322 58495230 58492655 0.000000e+00 3895.0
2 TraesCS4A01G400900 chr7D 83.190 464 59 11 3320 3777 58492606 58492156 1.330000e-109 407.0
3 TraesCS4A01G400900 chr7D 87.500 192 17 3 3792 3983 58491937 58491753 8.670000e-52 215.0
4 TraesCS4A01G400900 chr7D 91.912 136 11 0 13 148 58495815 58495680 1.460000e-44 191.0
5 TraesCS4A01G400900 chr7A 94.215 2230 107 11 773 2992 62848999 62846782 0.000000e+00 3384.0
6 TraesCS4A01G400900 chr7A 85.119 1008 90 19 2993 3962 62846723 62845738 0.000000e+00 976.0
7 TraesCS4A01G400900 chr7A 93.919 148 9 0 1 148 62849814 62849667 1.440000e-54 224.0
8 TraesCS4A01G400900 chr4D 83.677 631 72 17 2993 3613 432424893 432425502 2.080000e-157 566.0
9 TraesCS4A01G400900 chr4D 84.661 502 40 9 1856 2350 432421284 432421755 2.170000e-127 466.0
10 TraesCS4A01G400900 chr4D 100.000 30 0 0 2272 2301 432425599 432425570 5.560000e-04 56.5
11 TraesCS4A01G400900 chr4B 85.843 332 37 8 3286 3610 530204260 530204588 1.060000e-90 344.0
12 TraesCS4A01G400900 chr4B 83.387 313 35 12 2987 3294 530199489 530199789 1.410000e-69 274.0
13 TraesCS4A01G400900 chr4B 95.122 82 4 0 2152 2233 530198808 530198889 3.230000e-26 130.0
14 TraesCS4A01G400900 chr4B 95.918 49 2 0 2302 2350 530198889 530198937 3.300000e-11 80.5
15 TraesCS4A01G400900 chr4B 100.000 30 0 0 2272 2301 530204688 530204659 5.560000e-04 56.5
16 TraesCS4A01G400900 chr5A 89.062 128 14 0 529 656 565555075 565554948 4.120000e-35 159.0
17 TraesCS4A01G400900 chr6D 87.407 135 17 0 522 656 448162109 448161975 5.330000e-34 156.0
18 TraesCS4A01G400900 chr6D 86.260 131 15 1 529 656 448416276 448416406 5.370000e-29 139.0
19 TraesCS4A01G400900 chr6B 81.818 121 22 0 536 656 515157274 515157394 7.040000e-18 102.0
20 TraesCS4A01G400900 chr6B 80.488 123 19 5 532 652 66755949 66755830 5.480000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G400900 chr4A 674939722 674943704 3982 True 7356 7356 100.000000 1 3983 1 chr4A.!!$R1 3982
1 TraesCS4A01G400900 chr7D 58491753 58495815 4062 True 1177 3895 89.182250 13 3983 4 chr7D.!!$R1 3970
2 TraesCS4A01G400900 chr7A 62845738 62849814 4076 True 1528 3384 91.084333 1 3962 3 chr7A.!!$R1 3961
3 TraesCS4A01G400900 chr4D 432421284 432425502 4218 False 516 566 84.169000 1856 3613 2 chr4D.!!$F1 1757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 928 0.031857 TGGCAATTTTGGTGACGCTG 59.968 50.0 0.00 0.0 0.00 5.18 F
620 1036 0.031857 TGCCAGAAAATTGCCGTGTG 59.968 50.0 0.00 0.0 0.00 3.82 F
621 1037 0.031994 GCCAGAAAATTGCCGTGTGT 59.968 50.0 0.00 0.0 0.00 3.72 F
763 1179 0.037882 CACTCTCGCAAGGAAGCTGA 60.038 55.0 0.00 0.0 38.47 4.26 F
910 1411 0.042731 CCCTCCCCTACTCAACCTCA 59.957 60.0 0.00 0.0 0.00 3.86 F
2469 2988 0.538584 CTGCCTGCAGTCATAGTGGA 59.461 55.0 13.81 0.0 39.10 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2477 0.107945 GGGCTGCACTCTCCAAGTAG 60.108 60.000 0.50 0.00 36.07 2.57 R
1966 2478 0.835971 TGGGCTGCACTCTCCAAGTA 60.836 55.000 2.50 0.00 36.07 2.24 R
2340 2859 1.679641 CACAGCATGGGCCATGACA 60.680 57.895 42.91 6.86 43.81 3.58 R
2469 2988 3.009143 ACCGCTTCCCTTCTGAAACTAAT 59.991 43.478 0.00 0.00 0.00 1.73 R
2725 5854 5.127194 TGAGTACATAGATTCCACTGTCCAC 59.873 44.000 0.00 0.00 0.00 4.02 R
3893 7378 1.219124 GCGATCCCAGCTTGAGTCA 59.781 57.895 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.816672 AGCTGGTTCTAAGCAAAAGCTC 59.183 45.455 0.00 0.00 43.37 4.09
100 101 7.086376 GCAATCTGTATGTGTCATCTGTTTTT 58.914 34.615 0.00 0.00 0.00 1.94
167 227 2.744202 GAGACAAGGCCAGTGTGTTATG 59.256 50.000 16.19 0.00 0.00 1.90
175 237 2.673368 GCCAGTGTGTTATGTAGCTGTC 59.327 50.000 0.00 0.00 0.00 3.51
182 244 4.749598 TGTGTTATGTAGCTGTCACACAAG 59.250 41.667 13.54 0.00 41.08 3.16
201 267 7.910162 CACACAAGCCAAATACTACAATATCAC 59.090 37.037 0.00 0.00 0.00 3.06
228 295 7.489574 TTTTTGTTGCTGTTGAGAAAAACTT 57.510 28.000 0.00 0.00 0.00 2.66
231 298 5.777802 TGTTGCTGTTGAGAAAAACTTCAA 58.222 33.333 0.00 0.00 0.00 2.69
232 299 6.219473 TGTTGCTGTTGAGAAAAACTTCAAA 58.781 32.000 0.00 0.00 0.00 2.69
233 300 6.703607 TGTTGCTGTTGAGAAAAACTTCAAAA 59.296 30.769 0.00 0.00 0.00 2.44
266 333 5.823045 GTGCTGTGATTATTTAAGGGCTACT 59.177 40.000 0.00 0.00 0.00 2.57
271 338 5.823045 GTGATTATTTAAGGGCTACTGCAGT 59.177 40.000 25.12 25.12 41.91 4.40
293 414 8.342634 GCAGTAACAAGTAGTGATTTCTTTTGA 58.657 33.333 0.00 0.00 35.41 2.69
308 429 3.822735 TCTTTTGAGCATAGCAGCAAGTT 59.177 39.130 0.00 0.00 36.85 2.66
323 444 5.693814 CAGCAAGTTGGTAATCACTTCTTC 58.306 41.667 7.35 0.00 0.00 2.87
324 445 4.452455 AGCAAGTTGGTAATCACTTCTTCG 59.548 41.667 5.60 0.00 0.00 3.79
325 446 4.712763 CAAGTTGGTAATCACTTCTTCGC 58.287 43.478 0.00 0.00 0.00 4.70
326 447 4.002906 AGTTGGTAATCACTTCTTCGCA 57.997 40.909 0.00 0.00 0.00 5.10
393 772 2.680339 GCTGTTTGGAGCTAGATTGGAC 59.320 50.000 0.00 0.00 35.95 4.02
412 791 0.533951 CTTGAAGCCCATTTCCAGCC 59.466 55.000 0.00 0.00 0.00 4.85
418 797 0.536724 GCCCATTTCCAGCCGAAAAT 59.463 50.000 1.07 0.00 43.61 1.82
421 800 3.181466 GCCCATTTCCAGCCGAAAATAAT 60.181 43.478 1.07 0.00 43.61 1.28
422 801 4.038642 GCCCATTTCCAGCCGAAAATAATA 59.961 41.667 1.07 0.00 43.61 0.98
436 852 7.438459 GCCGAAAATAATAAGAACTGAGCTAGA 59.562 37.037 0.00 0.00 0.00 2.43
437 853 9.314321 CCGAAAATAATAAGAACTGAGCTAGAA 57.686 33.333 0.00 0.00 0.00 2.10
443 859 9.995003 ATAATAAGAACTGAGCTAGAATTGGAG 57.005 33.333 0.00 0.00 0.00 3.86
444 860 7.667575 ATAAGAACTGAGCTAGAATTGGAGA 57.332 36.000 0.00 0.00 0.00 3.71
445 861 5.337578 AGAACTGAGCTAGAATTGGAGAC 57.662 43.478 0.00 0.00 0.00 3.36
446 862 3.791973 ACTGAGCTAGAATTGGAGACG 57.208 47.619 0.00 0.00 0.00 4.18
447 863 3.357203 ACTGAGCTAGAATTGGAGACGA 58.643 45.455 0.00 0.00 0.00 4.20
448 864 3.764434 ACTGAGCTAGAATTGGAGACGAA 59.236 43.478 0.00 0.00 0.00 3.85
449 865 4.404073 ACTGAGCTAGAATTGGAGACGAAT 59.596 41.667 0.00 0.00 0.00 3.34
450 866 5.105146 ACTGAGCTAGAATTGGAGACGAATT 60.105 40.000 0.00 0.00 0.00 2.17
451 867 5.111989 TGAGCTAGAATTGGAGACGAATTG 58.888 41.667 0.00 0.00 0.00 2.32
452 868 5.091261 AGCTAGAATTGGAGACGAATTGT 57.909 39.130 0.00 0.00 0.00 2.71
453 869 6.127451 TGAGCTAGAATTGGAGACGAATTGTA 60.127 38.462 0.00 0.00 0.00 2.41
454 870 6.640518 AGCTAGAATTGGAGACGAATTGTAA 58.359 36.000 0.00 0.00 0.00 2.41
455 871 7.275920 AGCTAGAATTGGAGACGAATTGTAAT 58.724 34.615 0.00 0.00 0.00 1.89
456 872 7.770897 AGCTAGAATTGGAGACGAATTGTAATT 59.229 33.333 0.00 0.00 0.00 1.40
457 873 8.064814 GCTAGAATTGGAGACGAATTGTAATTC 58.935 37.037 7.17 7.17 41.02 2.17
458 874 7.321745 AGAATTGGAGACGAATTGTAATTCC 57.678 36.000 10.76 0.00 41.30 3.01
459 875 6.884295 AGAATTGGAGACGAATTGTAATTCCA 59.116 34.615 10.76 2.23 41.30 3.53
460 876 6.683974 ATTGGAGACGAATTGTAATTCCAG 57.316 37.500 10.76 2.39 41.30 3.86
461 877 3.938963 TGGAGACGAATTGTAATTCCAGC 59.061 43.478 10.76 2.55 41.30 4.85
462 878 4.192317 GGAGACGAATTGTAATTCCAGCT 58.808 43.478 10.76 6.43 41.30 4.24
463 879 4.636206 GGAGACGAATTGTAATTCCAGCTT 59.364 41.667 10.76 0.00 41.30 3.74
464 880 5.123979 GGAGACGAATTGTAATTCCAGCTTT 59.876 40.000 10.76 0.00 41.30 3.51
465 881 6.349363 GGAGACGAATTGTAATTCCAGCTTTT 60.349 38.462 10.76 0.00 41.30 2.27
466 882 7.148306 GGAGACGAATTGTAATTCCAGCTTTTA 60.148 37.037 10.76 0.00 41.30 1.52
467 883 8.281212 AGACGAATTGTAATTCCAGCTTTTAT 57.719 30.769 10.76 0.00 41.30 1.40
468 884 8.739972 AGACGAATTGTAATTCCAGCTTTTATT 58.260 29.630 10.76 0.00 41.30 1.40
469 885 8.687824 ACGAATTGTAATTCCAGCTTTTATTG 57.312 30.769 10.76 0.00 41.30 1.90
470 886 7.759433 ACGAATTGTAATTCCAGCTTTTATTGG 59.241 33.333 10.76 0.00 41.30 3.16
471 887 7.973388 CGAATTGTAATTCCAGCTTTTATTGGA 59.027 33.333 10.76 0.00 41.30 3.53
472 888 9.087424 GAATTGTAATTCCAGCTTTTATTGGAC 57.913 33.333 6.14 0.00 42.93 4.02
473 889 6.524101 TGTAATTCCAGCTTTTATTGGACC 57.476 37.500 0.00 0.00 42.93 4.46
474 890 5.420739 TGTAATTCCAGCTTTTATTGGACCC 59.579 40.000 0.00 0.00 42.93 4.46
475 891 3.825908 TTCCAGCTTTTATTGGACCCT 57.174 42.857 0.00 0.00 42.93 4.34
476 892 3.085952 TCCAGCTTTTATTGGACCCTG 57.914 47.619 0.00 0.00 38.53 4.45
477 893 2.647299 TCCAGCTTTTATTGGACCCTGA 59.353 45.455 0.00 0.00 38.53 3.86
478 894 3.269381 TCCAGCTTTTATTGGACCCTGAT 59.731 43.478 0.00 0.00 38.53 2.90
479 895 4.476846 TCCAGCTTTTATTGGACCCTGATA 59.523 41.667 0.00 0.00 38.53 2.15
480 896 5.044476 TCCAGCTTTTATTGGACCCTGATAA 60.044 40.000 0.00 0.00 38.53 1.75
481 897 5.067805 CCAGCTTTTATTGGACCCTGATAAC 59.932 44.000 0.00 0.00 36.55 1.89
482 898 4.881850 AGCTTTTATTGGACCCTGATAACG 59.118 41.667 0.00 0.00 0.00 3.18
483 899 4.497507 GCTTTTATTGGACCCTGATAACGC 60.498 45.833 0.00 0.00 0.00 4.84
484 900 3.916359 TTATTGGACCCTGATAACGCA 57.084 42.857 0.00 0.00 0.00 5.24
485 901 2.332063 ATTGGACCCTGATAACGCAG 57.668 50.000 0.00 0.00 35.66 5.18
499 915 2.818130 ACGCAGTTTTCAATGGCAAT 57.182 40.000 0.00 0.00 37.78 3.56
500 916 3.110447 ACGCAGTTTTCAATGGCAATT 57.890 38.095 0.00 0.00 37.78 2.32
501 917 3.465871 ACGCAGTTTTCAATGGCAATTT 58.534 36.364 0.00 0.00 37.78 1.82
502 918 3.876320 ACGCAGTTTTCAATGGCAATTTT 59.124 34.783 0.00 0.00 37.78 1.82
503 919 4.212911 CGCAGTTTTCAATGGCAATTTTG 58.787 39.130 0.00 0.00 0.00 2.44
504 920 4.538917 GCAGTTTTCAATGGCAATTTTGG 58.461 39.130 0.00 0.00 0.00 3.28
505 921 4.036616 GCAGTTTTCAATGGCAATTTTGGT 59.963 37.500 0.00 0.00 0.00 3.67
506 922 5.512473 CAGTTTTCAATGGCAATTTTGGTG 58.488 37.500 0.00 0.00 0.00 4.17
507 923 5.296283 CAGTTTTCAATGGCAATTTTGGTGA 59.704 36.000 0.00 0.00 0.00 4.02
508 924 5.296531 AGTTTTCAATGGCAATTTTGGTGAC 59.703 36.000 0.00 0.00 0.00 3.67
509 925 3.023946 TCAATGGCAATTTTGGTGACG 57.976 42.857 0.00 0.00 0.00 4.35
510 926 1.460359 CAATGGCAATTTTGGTGACGC 59.540 47.619 0.00 0.00 0.00 5.19
511 927 0.968405 ATGGCAATTTTGGTGACGCT 59.032 45.000 0.00 0.00 0.00 5.07
512 928 0.031857 TGGCAATTTTGGTGACGCTG 59.968 50.000 0.00 0.00 0.00 5.18
513 929 0.313672 GGCAATTTTGGTGACGCTGA 59.686 50.000 0.00 0.00 0.00 4.26
514 930 1.067635 GGCAATTTTGGTGACGCTGAT 60.068 47.619 0.00 0.00 0.00 2.90
515 931 1.987770 GCAATTTTGGTGACGCTGATG 59.012 47.619 0.00 0.00 0.00 3.07
516 932 2.351641 GCAATTTTGGTGACGCTGATGA 60.352 45.455 0.00 0.00 0.00 2.92
517 933 3.236816 CAATTTTGGTGACGCTGATGAC 58.763 45.455 0.00 0.00 0.00 3.06
518 934 0.865111 TTTTGGTGACGCTGATGACG 59.135 50.000 0.00 0.00 0.00 4.35
519 935 1.565156 TTTGGTGACGCTGATGACGC 61.565 55.000 0.00 0.00 0.00 5.19
520 936 2.432456 GGTGACGCTGATGACGCA 60.432 61.111 0.00 0.00 0.00 5.24
521 937 2.447887 GGTGACGCTGATGACGCAG 61.448 63.158 0.00 0.00 38.91 5.18
537 953 4.519540 ACGCAGTTTCTAATGGCAATTT 57.480 36.364 0.00 0.00 37.78 1.82
538 954 4.881920 ACGCAGTTTCTAATGGCAATTTT 58.118 34.783 0.00 0.00 37.78 1.82
539 955 6.019779 ACGCAGTTTCTAATGGCAATTTTA 57.980 33.333 0.00 0.00 37.78 1.52
540 956 6.451393 ACGCAGTTTCTAATGGCAATTTTAA 58.549 32.000 0.00 0.00 37.78 1.52
541 957 7.096551 ACGCAGTTTCTAATGGCAATTTTAAT 58.903 30.769 0.00 0.00 37.78 1.40
542 958 7.063308 ACGCAGTTTCTAATGGCAATTTTAATG 59.937 33.333 0.00 0.00 37.78 1.90
543 959 7.275341 CGCAGTTTCTAATGGCAATTTTAATGA 59.725 33.333 0.00 0.00 0.00 2.57
544 960 8.382875 GCAGTTTCTAATGGCAATTTTAATGAC 58.617 33.333 0.00 0.00 0.00 3.06
545 961 8.586273 CAGTTTCTAATGGCAATTTTAATGACG 58.414 33.333 0.00 0.00 0.00 4.35
546 962 7.275560 AGTTTCTAATGGCAATTTTAATGACGC 59.724 33.333 0.00 0.00 0.00 5.19
547 963 5.270083 TCTAATGGCAATTTTAATGACGCG 58.730 37.500 3.53 3.53 0.00 6.01
548 964 3.773860 ATGGCAATTTTAATGACGCGA 57.226 38.095 15.93 0.00 0.00 5.87
549 965 2.857618 TGGCAATTTTAATGACGCGAC 58.142 42.857 15.93 7.62 0.00 5.19
550 966 1.837747 GGCAATTTTAATGACGCGACG 59.162 47.619 15.93 0.00 0.00 5.12
551 967 2.474856 GGCAATTTTAATGACGCGACGA 60.475 45.455 15.93 0.00 0.00 4.20
552 968 3.350912 GCAATTTTAATGACGCGACGAT 58.649 40.909 15.93 1.49 0.00 3.73
553 969 3.175709 GCAATTTTAATGACGCGACGATG 59.824 43.478 15.93 0.00 0.00 3.84
554 970 4.331137 CAATTTTAATGACGCGACGATGT 58.669 39.130 15.93 0.00 0.00 3.06
555 971 3.628053 TTTTAATGACGCGACGATGTC 57.372 42.857 15.93 12.18 35.67 3.06
558 974 4.880899 TGACGCGACGATGTCAAT 57.119 50.000 15.93 0.00 41.82 2.57
559 975 3.116073 TGACGCGACGATGTCAATT 57.884 47.368 15.93 0.00 41.82 2.32
560 976 1.424403 TGACGCGACGATGTCAATTT 58.576 45.000 15.93 0.00 41.82 1.82
561 977 1.795872 TGACGCGACGATGTCAATTTT 59.204 42.857 15.93 0.00 41.82 1.82
562 978 2.987821 TGACGCGACGATGTCAATTTTA 59.012 40.909 15.93 0.00 41.82 1.52
563 979 3.060230 TGACGCGACGATGTCAATTTTAG 59.940 43.478 15.93 0.00 41.82 1.85
564 980 2.991190 ACGCGACGATGTCAATTTTAGT 59.009 40.909 15.93 0.00 32.09 2.24
565 981 3.430895 ACGCGACGATGTCAATTTTAGTT 59.569 39.130 15.93 0.00 32.09 2.24
566 982 3.773549 CGCGACGATGTCAATTTTAGTTG 59.226 43.478 0.00 0.00 32.09 3.16
567 983 4.088648 GCGACGATGTCAATTTTAGTTGG 58.911 43.478 0.00 0.00 32.09 3.77
568 984 4.088648 CGACGATGTCAATTTTAGTTGGC 58.911 43.478 0.00 0.00 34.37 4.52
569 985 4.377943 CGACGATGTCAATTTTAGTTGGCA 60.378 41.667 0.00 0.00 46.47 4.92
570 986 5.446143 ACGATGTCAATTTTAGTTGGCAA 57.554 34.783 0.00 0.00 45.67 4.52
571 987 5.460646 ACGATGTCAATTTTAGTTGGCAAG 58.539 37.500 0.00 0.00 45.67 4.01
572 988 4.324402 CGATGTCAATTTTAGTTGGCAAGC 59.676 41.667 0.00 0.00 45.67 4.01
573 989 4.662468 TGTCAATTTTAGTTGGCAAGCA 57.338 36.364 0.00 0.00 40.43 3.91
574 990 5.212532 TGTCAATTTTAGTTGGCAAGCAT 57.787 34.783 0.00 0.00 40.43 3.79
575 991 4.989797 TGTCAATTTTAGTTGGCAAGCATG 59.010 37.500 0.00 0.00 40.43 4.06
576 992 5.221402 TGTCAATTTTAGTTGGCAAGCATGA 60.221 36.000 0.00 0.00 40.43 3.07
577 993 5.119125 GTCAATTTTAGTTGGCAAGCATGAC 59.881 40.000 0.00 5.44 33.97 3.06
578 994 4.870123 ATTTTAGTTGGCAAGCATGACA 57.130 36.364 0.00 0.00 44.97 3.58
583 999 2.644887 TGGCAAGCATGACAACTCC 58.355 52.632 0.00 0.00 43.21 3.85
584 1000 1.236616 TGGCAAGCATGACAACTCCG 61.237 55.000 0.00 0.00 43.21 4.63
585 1001 1.237285 GGCAAGCATGACAACTCCGT 61.237 55.000 0.00 0.00 33.41 4.69
586 1002 0.110056 GCAAGCATGACAACTCCGTG 60.110 55.000 0.00 0.00 0.00 4.94
587 1003 0.110056 CAAGCATGACAACTCCGTGC 60.110 55.000 0.00 0.00 44.52 5.34
588 1004 3.972227 GCATGACAACTCCGTGCT 58.028 55.556 0.00 0.00 41.83 4.40
589 1005 1.790387 GCATGACAACTCCGTGCTC 59.210 57.895 0.00 0.00 41.83 4.26
590 1006 0.950555 GCATGACAACTCCGTGCTCA 60.951 55.000 0.00 0.00 41.83 4.26
591 1007 1.511850 CATGACAACTCCGTGCTCAA 58.488 50.000 0.00 0.00 0.00 3.02
592 1008 2.079158 CATGACAACTCCGTGCTCAAT 58.921 47.619 0.00 0.00 0.00 2.57
593 1009 1.511850 TGACAACTCCGTGCTCAATG 58.488 50.000 0.00 0.00 0.00 2.82
594 1010 1.202639 TGACAACTCCGTGCTCAATGT 60.203 47.619 0.00 0.00 0.00 2.71
595 1011 2.036604 TGACAACTCCGTGCTCAATGTA 59.963 45.455 0.00 0.00 0.00 2.29
596 1012 3.262420 GACAACTCCGTGCTCAATGTAT 58.738 45.455 0.00 0.00 0.00 2.29
597 1013 3.674997 ACAACTCCGTGCTCAATGTATT 58.325 40.909 0.00 0.00 0.00 1.89
598 1014 4.072131 ACAACTCCGTGCTCAATGTATTT 58.928 39.130 0.00 0.00 0.00 1.40
599 1015 4.518970 ACAACTCCGTGCTCAATGTATTTT 59.481 37.500 0.00 0.00 0.00 1.82
600 1016 4.685169 ACTCCGTGCTCAATGTATTTTG 57.315 40.909 0.00 0.00 0.00 2.44
601 1017 4.072131 ACTCCGTGCTCAATGTATTTTGT 58.928 39.130 0.00 0.00 0.00 2.83
602 1018 4.083324 ACTCCGTGCTCAATGTATTTTGTG 60.083 41.667 0.00 0.00 0.00 3.33
603 1019 2.916716 CCGTGCTCAATGTATTTTGTGC 59.083 45.455 4.73 4.73 43.12 4.57
604 1020 2.916716 CGTGCTCAATGTATTTTGTGCC 59.083 45.455 8.27 1.33 42.50 5.01
605 1021 3.611293 CGTGCTCAATGTATTTTGTGCCA 60.611 43.478 8.27 0.00 42.50 4.92
606 1022 3.922240 GTGCTCAATGTATTTTGTGCCAG 59.078 43.478 8.27 0.00 42.50 4.85
607 1023 3.825585 TGCTCAATGTATTTTGTGCCAGA 59.174 39.130 8.27 0.00 42.50 3.86
608 1024 4.280425 TGCTCAATGTATTTTGTGCCAGAA 59.720 37.500 8.27 0.00 42.50 3.02
609 1025 5.221402 TGCTCAATGTATTTTGTGCCAGAAA 60.221 36.000 8.27 0.00 42.50 2.52
610 1026 5.695816 GCTCAATGTATTTTGTGCCAGAAAA 59.304 36.000 1.96 1.96 39.17 2.29
611 1027 6.369615 GCTCAATGTATTTTGTGCCAGAAAAT 59.630 34.615 15.70 15.70 39.17 1.82
612 1028 7.095102 GCTCAATGTATTTTGTGCCAGAAAATT 60.095 33.333 16.47 0.00 39.17 1.82
613 1029 8.085720 TCAATGTATTTTGTGCCAGAAAATTG 57.914 30.769 16.47 10.32 35.25 2.32
614 1030 5.921004 TGTATTTTGTGCCAGAAAATTGC 57.079 34.783 16.47 11.07 35.25 3.56
615 1031 4.754114 TGTATTTTGTGCCAGAAAATTGCC 59.246 37.500 16.47 7.27 35.25 4.52
616 1032 1.863267 TTTGTGCCAGAAAATTGCCG 58.137 45.000 0.00 0.00 0.00 5.69
617 1033 0.749649 TTGTGCCAGAAAATTGCCGT 59.250 45.000 0.00 0.00 0.00 5.68
618 1034 0.031857 TGTGCCAGAAAATTGCCGTG 59.968 50.000 0.00 0.00 0.00 4.94
619 1035 0.031994 GTGCCAGAAAATTGCCGTGT 59.968 50.000 0.00 0.00 0.00 4.49
620 1036 0.031857 TGCCAGAAAATTGCCGTGTG 59.968 50.000 0.00 0.00 0.00 3.82
621 1037 0.031994 GCCAGAAAATTGCCGTGTGT 59.968 50.000 0.00 0.00 0.00 3.72
622 1038 1.769733 CCAGAAAATTGCCGTGTGTG 58.230 50.000 0.00 0.00 0.00 3.82
623 1039 1.066908 CCAGAAAATTGCCGTGTGTGT 59.933 47.619 0.00 0.00 0.00 3.72
624 1040 2.384382 CAGAAAATTGCCGTGTGTGTC 58.616 47.619 0.00 0.00 0.00 3.67
625 1041 2.020720 AGAAAATTGCCGTGTGTGTCA 58.979 42.857 0.00 0.00 0.00 3.58
626 1042 2.425312 AGAAAATTGCCGTGTGTGTCAA 59.575 40.909 0.00 0.00 0.00 3.18
627 1043 2.202295 AAATTGCCGTGTGTGTCAAC 57.798 45.000 0.00 0.00 0.00 3.18
628 1044 1.388547 AATTGCCGTGTGTGTCAACT 58.611 45.000 0.00 0.00 0.00 3.16
629 1045 2.248280 ATTGCCGTGTGTGTCAACTA 57.752 45.000 0.00 0.00 0.00 2.24
630 1046 2.025589 TTGCCGTGTGTGTCAACTAA 57.974 45.000 0.00 0.00 0.00 2.24
631 1047 2.025589 TGCCGTGTGTGTCAACTAAA 57.974 45.000 0.00 0.00 0.00 1.85
632 1048 2.566913 TGCCGTGTGTGTCAACTAAAT 58.433 42.857 0.00 0.00 0.00 1.40
633 1049 2.946329 TGCCGTGTGTGTCAACTAAATT 59.054 40.909 0.00 0.00 0.00 1.82
634 1050 3.378742 TGCCGTGTGTGTCAACTAAATTT 59.621 39.130 0.00 0.00 0.00 1.82
635 1051 3.728718 GCCGTGTGTGTCAACTAAATTTG 59.271 43.478 0.00 0.00 0.00 2.32
636 1052 3.728718 CCGTGTGTGTCAACTAAATTTGC 59.271 43.478 0.00 0.00 0.00 3.68
637 1053 3.728718 CGTGTGTGTCAACTAAATTTGCC 59.271 43.478 0.00 0.00 0.00 4.52
638 1054 4.677584 GTGTGTGTCAACTAAATTTGCCA 58.322 39.130 0.00 0.00 0.00 4.92
639 1055 5.288804 GTGTGTGTCAACTAAATTTGCCAT 58.711 37.500 0.00 0.00 0.00 4.40
640 1056 5.402270 GTGTGTGTCAACTAAATTTGCCATC 59.598 40.000 0.00 0.00 0.00 3.51
641 1057 4.923281 GTGTGTCAACTAAATTTGCCATCC 59.077 41.667 0.00 0.00 0.00 3.51
642 1058 4.832266 TGTGTCAACTAAATTTGCCATCCT 59.168 37.500 0.00 0.00 0.00 3.24
643 1059 5.304101 TGTGTCAACTAAATTTGCCATCCTT 59.696 36.000 0.00 0.00 0.00 3.36
644 1060 5.634859 GTGTCAACTAAATTTGCCATCCTTG 59.365 40.000 0.00 0.00 0.00 3.61
645 1061 5.304101 TGTCAACTAAATTTGCCATCCTTGT 59.696 36.000 0.00 0.00 0.00 3.16
646 1062 5.634859 GTCAACTAAATTTGCCATCCTTGTG 59.365 40.000 0.00 0.00 0.00 3.33
647 1063 5.304101 TCAACTAAATTTGCCATCCTTGTGT 59.696 36.000 0.00 0.00 0.00 3.72
648 1064 5.391312 ACTAAATTTGCCATCCTTGTGTC 57.609 39.130 0.00 0.00 0.00 3.67
649 1065 4.832266 ACTAAATTTGCCATCCTTGTGTCA 59.168 37.500 0.00 0.00 0.00 3.58
650 1066 3.665745 AATTTGCCATCCTTGTGTCAC 57.334 42.857 0.00 0.00 0.00 3.67
651 1067 2.363306 TTTGCCATCCTTGTGTCACT 57.637 45.000 4.27 0.00 0.00 3.41
652 1068 3.500448 TTTGCCATCCTTGTGTCACTA 57.500 42.857 4.27 0.00 0.00 2.74
653 1069 3.500448 TTGCCATCCTTGTGTCACTAA 57.500 42.857 4.27 0.00 0.00 2.24
654 1070 3.500448 TGCCATCCTTGTGTCACTAAA 57.500 42.857 4.27 0.00 0.00 1.85
655 1071 3.826524 TGCCATCCTTGTGTCACTAAAA 58.173 40.909 4.27 0.00 0.00 1.52
656 1072 3.568007 TGCCATCCTTGTGTCACTAAAAC 59.432 43.478 4.27 0.00 0.00 2.43
657 1073 3.364964 GCCATCCTTGTGTCACTAAAACG 60.365 47.826 4.27 0.00 0.00 3.60
658 1074 3.364964 CCATCCTTGTGTCACTAAAACGC 60.365 47.826 4.27 0.00 0.00 4.84
659 1075 2.215196 TCCTTGTGTCACTAAAACGCC 58.785 47.619 4.27 0.00 0.00 5.68
660 1076 1.265905 CCTTGTGTCACTAAAACGCCC 59.734 52.381 4.27 0.00 0.00 6.13
661 1077 1.265905 CTTGTGTCACTAAAACGCCCC 59.734 52.381 4.27 0.00 0.00 5.80
662 1078 0.180642 TGTGTCACTAAAACGCCCCA 59.819 50.000 4.27 0.00 0.00 4.96
663 1079 1.202830 TGTGTCACTAAAACGCCCCAT 60.203 47.619 4.27 0.00 0.00 4.00
664 1080 1.467342 GTGTCACTAAAACGCCCCATC 59.533 52.381 0.00 0.00 0.00 3.51
665 1081 0.725117 GTCACTAAAACGCCCCATCG 59.275 55.000 0.00 0.00 0.00 3.84
666 1082 0.609151 TCACTAAAACGCCCCATCGA 59.391 50.000 0.00 0.00 0.00 3.59
667 1083 1.208535 TCACTAAAACGCCCCATCGAT 59.791 47.619 0.00 0.00 0.00 3.59
668 1084 2.431419 TCACTAAAACGCCCCATCGATA 59.569 45.455 0.00 0.00 0.00 2.92
669 1085 3.118702 TCACTAAAACGCCCCATCGATAA 60.119 43.478 0.00 0.00 0.00 1.75
670 1086 3.001939 CACTAAAACGCCCCATCGATAAC 59.998 47.826 0.00 0.00 0.00 1.89
671 1087 1.011333 AAAACGCCCCATCGATAACG 58.989 50.000 0.00 2.21 41.26 3.18
672 1088 0.108041 AAACGCCCCATCGATAACGT 60.108 50.000 0.00 2.89 40.69 3.99
673 1089 0.108041 AACGCCCCATCGATAACGTT 60.108 50.000 16.35 16.35 38.75 3.99
674 1090 0.108041 ACGCCCCATCGATAACGTTT 60.108 50.000 5.91 0.00 40.69 3.60
675 1091 0.303493 CGCCCCATCGATAACGTTTG 59.697 55.000 5.91 0.00 40.69 2.93
676 1092 0.661020 GCCCCATCGATAACGTTTGG 59.339 55.000 5.91 7.62 40.55 3.28
677 1093 2.015081 GCCCCATCGATAACGTTTGGT 61.015 52.381 5.91 0.00 39.88 3.67
678 1094 2.361789 CCCCATCGATAACGTTTGGTT 58.638 47.619 5.91 0.00 42.75 3.67
679 1095 2.353579 CCCCATCGATAACGTTTGGTTC 59.646 50.000 5.91 0.00 40.09 3.62
680 1096 2.353579 CCCATCGATAACGTTTGGTTCC 59.646 50.000 5.91 0.00 40.09 3.62
681 1097 3.004171 CCATCGATAACGTTTGGTTCCA 58.996 45.455 5.91 0.00 40.09 3.53
682 1098 3.437395 CCATCGATAACGTTTGGTTCCAA 59.563 43.478 5.91 0.00 40.09 3.53
683 1099 4.083217 CCATCGATAACGTTTGGTTCCAAA 60.083 41.667 5.91 12.29 40.09 3.28
690 1106 1.830086 GTTTGGTTCCAAACGTTCGG 58.170 50.000 25.00 0.00 43.77 4.30
691 1107 1.132834 GTTTGGTTCCAAACGTTCGGT 59.867 47.619 25.00 0.00 43.77 4.69
692 1108 2.322355 TTGGTTCCAAACGTTCGGTA 57.678 45.000 4.94 0.00 0.00 4.02
693 1109 2.547299 TGGTTCCAAACGTTCGGTAT 57.453 45.000 4.94 0.00 0.00 2.73
694 1110 2.848691 TGGTTCCAAACGTTCGGTATT 58.151 42.857 4.94 0.00 0.00 1.89
695 1111 3.212685 TGGTTCCAAACGTTCGGTATTT 58.787 40.909 4.94 0.00 0.00 1.40
696 1112 4.384056 TGGTTCCAAACGTTCGGTATTTA 58.616 39.130 4.94 0.00 0.00 1.40
697 1113 5.002516 TGGTTCCAAACGTTCGGTATTTAT 58.997 37.500 4.94 0.00 0.00 1.40
698 1114 5.122082 TGGTTCCAAACGTTCGGTATTTATC 59.878 40.000 4.94 0.00 0.00 1.75
699 1115 5.122082 GGTTCCAAACGTTCGGTATTTATCA 59.878 40.000 4.94 0.00 0.00 2.15
700 1116 6.183360 GGTTCCAAACGTTCGGTATTTATCAT 60.183 38.462 4.94 0.00 0.00 2.45
701 1117 6.988622 TCCAAACGTTCGGTATTTATCATT 57.011 33.333 4.94 0.00 0.00 2.57
702 1118 7.380431 TCCAAACGTTCGGTATTTATCATTT 57.620 32.000 4.94 0.00 0.00 2.32
703 1119 7.818642 TCCAAACGTTCGGTATTTATCATTTT 58.181 30.769 4.94 0.00 0.00 1.82
704 1120 7.751348 TCCAAACGTTCGGTATTTATCATTTTG 59.249 33.333 4.94 0.00 0.00 2.44
705 1121 7.539366 CCAAACGTTCGGTATTTATCATTTTGT 59.461 33.333 0.00 0.00 0.00 2.83
706 1122 8.907685 CAAACGTTCGGTATTTATCATTTTGTT 58.092 29.630 0.00 0.00 0.00 2.83
707 1123 9.465985 AAACGTTCGGTATTTATCATTTTGTTT 57.534 25.926 0.00 0.00 0.00 2.83
754 1170 2.866156 CTGAACTGAAACACTCTCGCAA 59.134 45.455 0.00 0.00 0.00 4.85
755 1171 2.866156 TGAACTGAAACACTCTCGCAAG 59.134 45.455 0.00 0.00 0.00 4.01
756 1172 1.871080 ACTGAAACACTCTCGCAAGG 58.129 50.000 0.00 0.00 38.47 3.61
759 1175 2.478134 CTGAAACACTCTCGCAAGGAAG 59.522 50.000 0.00 0.00 38.47 3.46
760 1176 1.195674 GAAACACTCTCGCAAGGAAGC 59.804 52.381 0.00 0.00 38.47 3.86
763 1179 0.037882 CACTCTCGCAAGGAAGCTGA 60.038 55.000 0.00 0.00 38.47 4.26
771 1187 1.068679 GCAAGGAAGCTGAACTCAAGC 60.069 52.381 0.00 0.00 0.00 4.01
781 1197 2.229784 CTGAACTCAAGCCCATTTCCAC 59.770 50.000 0.00 0.00 0.00 4.02
789 1206 1.318158 GCCCATTTCCACCTGAGCTG 61.318 60.000 0.00 0.00 0.00 4.24
819 1315 1.568504 TGAAGCCCATAACCGTCTCT 58.431 50.000 0.00 0.00 0.00 3.10
824 1320 2.030045 GCCCATAACCGTCTCTCCTCT 61.030 57.143 0.00 0.00 0.00 3.69
825 1321 1.957877 CCCATAACCGTCTCTCCTCTC 59.042 57.143 0.00 0.00 0.00 3.20
826 1322 1.604755 CCATAACCGTCTCTCCTCTCG 59.395 57.143 0.00 0.00 0.00 4.04
827 1323 1.002251 CATAACCGTCTCTCCTCTCGC 60.002 57.143 0.00 0.00 0.00 5.03
828 1324 1.088340 TAACCGTCTCTCCTCTCGCG 61.088 60.000 0.00 0.00 0.00 5.87
829 1325 2.511829 CCGTCTCTCCTCTCGCGA 60.512 66.667 9.26 9.26 0.00 5.87
830 1326 2.107292 CCGTCTCTCCTCTCGCGAA 61.107 63.158 11.33 0.02 0.00 4.70
831 1327 1.350319 CGTCTCTCCTCTCGCGAAG 59.650 63.158 11.33 10.63 0.00 3.79
832 1328 1.363145 CGTCTCTCCTCTCGCGAAGT 61.363 60.000 11.33 0.00 0.00 3.01
833 1329 0.375803 GTCTCTCCTCTCGCGAAGTC 59.624 60.000 11.33 0.00 0.00 3.01
867 1363 2.652530 GACTCCCGCCGTTGTACA 59.347 61.111 0.00 0.00 0.00 2.90
874 1370 2.345991 GCCGTTGTACAGCTCCCA 59.654 61.111 8.15 0.00 0.00 4.37
884 1380 1.446618 CAGCTCCCAAAAATGGCGC 60.447 57.895 0.00 0.00 0.00 6.53
885 1381 1.907807 AGCTCCCAAAAATGGCGCA 60.908 52.632 10.83 0.00 0.00 6.09
910 1411 0.042731 CCCTCCCCTACTCAACCTCA 59.957 60.000 0.00 0.00 0.00 3.86
920 1421 1.385347 TCAACCTCACCCACCCACT 60.385 57.895 0.00 0.00 0.00 4.00
1042 1545 3.157949 GGCCTCCTCTCCCTTCCG 61.158 72.222 0.00 0.00 0.00 4.30
1043 1546 2.364448 GCCTCCTCTCCCTTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
1044 1547 1.990614 GCCTCCTCTCCCTTCCGTT 60.991 63.158 0.00 0.00 0.00 4.44
1045 1548 0.686769 GCCTCCTCTCCCTTCCGTTA 60.687 60.000 0.00 0.00 0.00 3.18
1596 2108 4.814294 GCGCGGAGGGTGTTCGAT 62.814 66.667 8.83 0.00 44.71 3.59
1674 2186 2.969238 GGGATGGCTGACGATGCG 60.969 66.667 0.00 0.00 0.00 4.73
1809 2321 2.330440 TGCATCGGTATGTTGCAGAT 57.670 45.000 0.00 0.00 45.81 2.90
1818 2330 1.999648 ATGTTGCAGATGGTGGTGTT 58.000 45.000 0.00 0.00 0.00 3.32
1911 2423 2.622011 GGTTTTCGACGGCATGGCA 61.622 57.895 20.37 0.00 0.00 4.92
1983 2495 0.742635 GCTACTTGGAGAGTGCAGCC 60.743 60.000 0.00 0.00 39.48 4.85
2340 2859 7.607991 AGAAATGTAGTGAGTTGGAATTCGATT 59.392 33.333 0.00 0.00 0.00 3.34
2469 2988 0.538584 CTGCCTGCAGTCATAGTGGA 59.461 55.000 13.81 0.00 39.10 4.02
2485 3004 6.672218 TCATAGTGGATTAGTTTCAGAAGGGA 59.328 38.462 0.00 0.00 0.00 4.20
2486 3005 5.843019 AGTGGATTAGTTTCAGAAGGGAA 57.157 39.130 0.00 0.00 0.00 3.97
2487 3006 5.810095 AGTGGATTAGTTTCAGAAGGGAAG 58.190 41.667 0.00 0.00 0.00 3.46
2693 5822 5.263599 TGGCAATGTAGAGATTGGTGAATT 58.736 37.500 2.02 0.00 34.42 2.17
2725 5854 7.593273 CAGATAAGCTAGTAAAACTCGATCCAG 59.407 40.741 0.00 0.00 0.00 3.86
2748 5877 5.361285 AGTGGACAGTGGAATCTATGTACTC 59.639 44.000 0.00 0.00 0.00 2.59
2819 5948 5.364735 TGCTGAGGATGTTGATGAGAGATAA 59.635 40.000 0.00 0.00 0.00 1.75
2886 6015 6.118170 TGGAAAATTTCATGAGTTTTTGGCA 58.882 32.000 17.45 0.00 0.00 4.92
2915 6044 6.698008 TGTTTCACATGTTCATTCAGAAGT 57.302 33.333 0.00 0.00 36.78 3.01
2931 6060 9.955208 CATTCAGAAGTTATTTATGCAGCATTA 57.045 29.630 14.58 0.36 0.00 1.90
3190 6382 6.239120 GGCCATTCTGATTTGTTATGCAGTAT 60.239 38.462 0.00 0.00 0.00 2.12
3401 6653 4.024048 AGAGCTTTTACACGGTGAAACATG 60.024 41.667 16.29 0.00 39.98 3.21
3430 6682 3.381272 CCATTCCAGTATCCAAAATGCGT 59.619 43.478 0.00 0.00 0.00 5.24
3443 6695 4.054671 CAAAATGCGTTTTGGAAAGGCTA 58.945 39.130 28.84 6.30 46.61 3.93
3669 6947 8.184249 TCTTATATATTACTCTGGGACATGGGT 58.816 37.037 0.00 0.00 38.20 4.51
3675 6953 2.039879 ACTCTGGGACATGGGTGTAAAC 59.960 50.000 0.00 0.00 39.09 2.01
3679 6957 2.980379 TGGGACATGGGTGTAAACTACA 59.020 45.455 0.00 0.00 39.09 2.74
3727 7005 3.256136 ACTCTGTATGGCCTAAGATACGC 59.744 47.826 3.32 0.00 0.00 4.42
3737 7015 6.395629 TGGCCTAAGATACGCTAATATGAAC 58.604 40.000 3.32 0.00 0.00 3.18
3740 7018 6.035112 GCCTAAGATACGCTAATATGAACAGC 59.965 42.308 0.00 0.00 0.00 4.40
3742 7020 8.459635 CCTAAGATACGCTAATATGAACAGCTA 58.540 37.037 0.00 0.00 33.03 3.32
3750 7028 7.039644 ACGCTAATATGAACAGCTACCTTCTAT 60.040 37.037 0.00 0.00 33.03 1.98
3768 7046 8.499406 ACCTTCTATTAGTCTCTCATCTAGTGT 58.501 37.037 0.00 0.00 0.00 3.55
3812 7294 7.980099 AGGTGAAATGACCTTAACTAATAGACG 59.020 37.037 0.00 0.00 44.53 4.18
3814 7296 7.977853 GTGAAATGACCTTAACTAATAGACGGA 59.022 37.037 0.00 0.00 0.00 4.69
3815 7297 8.701895 TGAAATGACCTTAACTAATAGACGGAT 58.298 33.333 0.00 0.00 0.00 4.18
3816 7298 9.194271 GAAATGACCTTAACTAATAGACGGATC 57.806 37.037 0.00 0.00 0.00 3.36
3831 7316 2.498481 ACGGATCCGATCAAAACAGGTA 59.502 45.455 39.55 0.00 42.83 3.08
3881 7366 3.242867 TCAGTCCATCTTGAGAACAGGT 58.757 45.455 0.00 0.00 0.00 4.00
3888 7373 4.498241 CATCTTGAGAACAGGTCGATTCA 58.502 43.478 0.00 0.00 0.00 2.57
3893 7378 5.152623 TGAGAACAGGTCGATTCAGATTT 57.847 39.130 0.00 0.00 0.00 2.17
3968 7453 3.434984 CCTCTAGCACAACTTTCTTGAGC 59.565 47.826 0.00 0.00 36.49 4.26
3971 7456 2.659428 AGCACAACTTTCTTGAGCCTT 58.341 42.857 0.00 0.00 36.82 4.35
3978 7463 2.646798 ACTTTCTTGAGCCTTCCCAGAT 59.353 45.455 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 0.250858 CACCACCATCACCAAGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
167 227 1.593196 TTGGCTTGTGTGACAGCTAC 58.407 50.000 0.00 0.00 0.00 3.58
175 237 7.910162 GTGATATTGTAGTATTTGGCTTGTGTG 59.090 37.037 0.00 0.00 0.00 3.82
182 244 8.905103 AAAAACGTGATATTGTAGTATTTGGC 57.095 30.769 0.00 0.00 0.00 4.52
238 305 4.342772 CCTTAAATAATCACAGCACGTGC 58.657 43.478 32.79 32.79 45.92 5.34
240 307 3.377172 GCCCTTAAATAATCACAGCACGT 59.623 43.478 0.00 0.00 0.00 4.49
241 308 3.627577 AGCCCTTAAATAATCACAGCACG 59.372 43.478 0.00 0.00 0.00 5.34
242 309 5.823045 AGTAGCCCTTAAATAATCACAGCAC 59.177 40.000 0.00 0.00 0.00 4.40
243 310 5.822519 CAGTAGCCCTTAAATAATCACAGCA 59.177 40.000 0.00 0.00 0.00 4.41
244 311 5.278022 GCAGTAGCCCTTAAATAATCACAGC 60.278 44.000 0.00 0.00 33.58 4.40
266 333 7.801716 AAAGAAATCACTACTTGTTACTGCA 57.198 32.000 0.00 0.00 0.00 4.41
271 338 8.445275 TGCTCAAAAGAAATCACTACTTGTTA 57.555 30.769 0.00 0.00 0.00 2.41
293 414 2.787473 TACCAACTTGCTGCTATGCT 57.213 45.000 0.00 0.00 0.00 3.79
308 429 5.759506 TTTTTGCGAAGAAGTGATTACCA 57.240 34.783 0.00 0.00 0.00 3.25
333 707 8.603242 TGTCTTTTAAGTGATTACCAACTCTC 57.397 34.615 0.00 0.00 0.00 3.20
345 719 3.977999 TCCCCTCCTTGTCTTTTAAGTGA 59.022 43.478 0.00 0.00 0.00 3.41
348 722 3.587506 TCCTCCCCTCCTTGTCTTTTAAG 59.412 47.826 0.00 0.00 0.00 1.85
350 724 3.285290 TCCTCCCCTCCTTGTCTTTTA 57.715 47.619 0.00 0.00 0.00 1.52
351 725 2.133858 TCCTCCCCTCCTTGTCTTTT 57.866 50.000 0.00 0.00 0.00 2.27
352 726 1.918957 CATCCTCCCCTCCTTGTCTTT 59.081 52.381 0.00 0.00 0.00 2.52
353 727 1.589414 CATCCTCCCCTCCTTGTCTT 58.411 55.000 0.00 0.00 0.00 3.01
354 728 0.985490 GCATCCTCCCCTCCTTGTCT 60.985 60.000 0.00 0.00 0.00 3.41
355 729 0.985490 AGCATCCTCCCCTCCTTGTC 60.985 60.000 0.00 0.00 0.00 3.18
393 772 0.533951 GGCTGGAAATGGGCTTCAAG 59.466 55.000 0.00 0.00 30.54 3.02
418 797 9.201989 TCTCCAATTCTAGCTCAGTTCTTATTA 57.798 33.333 0.00 0.00 0.00 0.98
421 800 6.404844 CGTCTCCAATTCTAGCTCAGTTCTTA 60.405 42.308 0.00 0.00 0.00 2.10
422 801 5.623368 CGTCTCCAATTCTAGCTCAGTTCTT 60.623 44.000 0.00 0.00 0.00 2.52
436 852 6.404734 GCTGGAATTACAATTCGTCTCCAATT 60.405 38.462 8.24 0.00 44.43 2.32
437 853 5.066505 GCTGGAATTACAATTCGTCTCCAAT 59.933 40.000 8.24 0.00 44.43 3.16
438 854 4.394920 GCTGGAATTACAATTCGTCTCCAA 59.605 41.667 8.24 0.00 44.43 3.53
439 855 3.938963 GCTGGAATTACAATTCGTCTCCA 59.061 43.478 8.24 1.55 44.43 3.86
440 856 4.192317 AGCTGGAATTACAATTCGTCTCC 58.808 43.478 8.24 0.00 44.43 3.71
441 857 5.803020 AAGCTGGAATTACAATTCGTCTC 57.197 39.130 8.24 0.00 44.43 3.36
442 858 6.575162 AAAAGCTGGAATTACAATTCGTCT 57.425 33.333 8.24 3.48 44.43 4.18
443 859 8.798153 CAATAAAAGCTGGAATTACAATTCGTC 58.202 33.333 8.24 1.62 44.43 4.20
444 860 7.759433 CCAATAAAAGCTGGAATTACAATTCGT 59.241 33.333 8.24 0.00 44.43 3.85
445 861 7.973388 TCCAATAAAAGCTGGAATTACAATTCG 59.027 33.333 8.24 0.00 44.43 3.34
446 862 9.087424 GTCCAATAAAAGCTGGAATTACAATTC 57.913 33.333 6.20 6.20 43.32 2.17
447 863 8.040727 GGTCCAATAAAAGCTGGAATTACAATT 58.959 33.333 0.00 0.00 43.32 2.32
448 864 7.364673 GGGTCCAATAAAAGCTGGAATTACAAT 60.365 37.037 0.00 0.00 43.32 2.71
449 865 6.071051 GGGTCCAATAAAAGCTGGAATTACAA 60.071 38.462 0.00 0.00 43.32 2.41
450 866 5.420739 GGGTCCAATAAAAGCTGGAATTACA 59.579 40.000 0.00 0.00 43.32 2.41
451 867 5.656859 AGGGTCCAATAAAAGCTGGAATTAC 59.343 40.000 0.00 0.00 43.32 1.89
452 868 5.656416 CAGGGTCCAATAAAAGCTGGAATTA 59.344 40.000 0.00 0.00 43.32 1.40
453 869 4.467438 CAGGGTCCAATAAAAGCTGGAATT 59.533 41.667 0.00 0.00 43.32 2.17
454 870 4.026052 CAGGGTCCAATAAAAGCTGGAAT 58.974 43.478 0.00 0.00 43.32 3.01
455 871 3.075283 TCAGGGTCCAATAAAAGCTGGAA 59.925 43.478 0.00 0.00 43.32 3.53
456 872 2.647299 TCAGGGTCCAATAAAAGCTGGA 59.353 45.455 0.00 0.00 39.47 3.86
457 873 3.085952 TCAGGGTCCAATAAAAGCTGG 57.914 47.619 0.00 0.00 0.00 4.85
458 874 5.220854 CGTTATCAGGGTCCAATAAAAGCTG 60.221 44.000 0.00 0.00 0.00 4.24
459 875 4.881850 CGTTATCAGGGTCCAATAAAAGCT 59.118 41.667 0.00 0.00 0.00 3.74
460 876 4.497507 GCGTTATCAGGGTCCAATAAAAGC 60.498 45.833 0.00 0.00 0.00 3.51
461 877 4.638421 TGCGTTATCAGGGTCCAATAAAAG 59.362 41.667 0.00 0.00 0.00 2.27
462 878 4.590918 TGCGTTATCAGGGTCCAATAAAA 58.409 39.130 0.00 0.00 0.00 1.52
463 879 4.196193 CTGCGTTATCAGGGTCCAATAAA 58.804 43.478 0.00 0.00 0.00 1.40
464 880 3.199071 ACTGCGTTATCAGGGTCCAATAA 59.801 43.478 0.00 0.00 38.36 1.40
465 881 2.769663 ACTGCGTTATCAGGGTCCAATA 59.230 45.455 0.00 0.00 38.36 1.90
466 882 1.559682 ACTGCGTTATCAGGGTCCAAT 59.440 47.619 0.00 0.00 38.36 3.16
467 883 0.981183 ACTGCGTTATCAGGGTCCAA 59.019 50.000 0.00 0.00 38.36 3.53
468 884 0.981183 AACTGCGTTATCAGGGTCCA 59.019 50.000 0.00 0.00 38.36 4.02
469 885 2.109425 AAACTGCGTTATCAGGGTCC 57.891 50.000 0.00 0.00 38.36 4.46
470 886 3.071479 TGAAAACTGCGTTATCAGGGTC 58.929 45.455 0.00 0.00 38.36 4.46
471 887 3.134574 TGAAAACTGCGTTATCAGGGT 57.865 42.857 0.00 0.00 38.36 4.34
472 888 4.414852 CATTGAAAACTGCGTTATCAGGG 58.585 43.478 0.00 0.00 38.36 4.45
473 889 4.414852 CCATTGAAAACTGCGTTATCAGG 58.585 43.478 0.00 0.00 38.36 3.86
474 890 3.853671 GCCATTGAAAACTGCGTTATCAG 59.146 43.478 0.00 0.00 39.86 2.90
475 891 3.254411 TGCCATTGAAAACTGCGTTATCA 59.746 39.130 0.00 0.00 0.00 2.15
476 892 3.832276 TGCCATTGAAAACTGCGTTATC 58.168 40.909 0.00 0.00 0.00 1.75
477 893 3.932545 TGCCATTGAAAACTGCGTTAT 57.067 38.095 0.00 0.00 0.00 1.89
478 894 3.717400 TTGCCATTGAAAACTGCGTTA 57.283 38.095 0.00 0.00 0.00 3.18
479 895 2.593346 TTGCCATTGAAAACTGCGTT 57.407 40.000 0.00 0.00 0.00 4.84
480 896 2.818130 ATTGCCATTGAAAACTGCGT 57.182 40.000 0.00 0.00 0.00 5.24
481 897 4.212911 CAAAATTGCCATTGAAAACTGCG 58.787 39.130 0.00 0.00 0.00 5.18
482 898 4.036616 ACCAAAATTGCCATTGAAAACTGC 59.963 37.500 0.00 0.00 0.00 4.40
483 899 5.296283 TCACCAAAATTGCCATTGAAAACTG 59.704 36.000 0.00 0.00 0.00 3.16
484 900 5.296531 GTCACCAAAATTGCCATTGAAAACT 59.703 36.000 0.00 0.00 0.00 2.66
485 901 5.509771 GTCACCAAAATTGCCATTGAAAAC 58.490 37.500 0.00 0.00 0.00 2.43
486 902 4.272018 CGTCACCAAAATTGCCATTGAAAA 59.728 37.500 0.00 0.00 0.00 2.29
487 903 3.806521 CGTCACCAAAATTGCCATTGAAA 59.193 39.130 0.00 0.00 0.00 2.69
488 904 3.388308 CGTCACCAAAATTGCCATTGAA 58.612 40.909 0.00 0.00 0.00 2.69
489 905 2.865670 GCGTCACCAAAATTGCCATTGA 60.866 45.455 0.00 0.00 0.00 2.57
490 906 1.460359 GCGTCACCAAAATTGCCATTG 59.540 47.619 0.00 0.00 0.00 2.82
491 907 1.344114 AGCGTCACCAAAATTGCCATT 59.656 42.857 0.00 0.00 0.00 3.16
492 908 0.968405 AGCGTCACCAAAATTGCCAT 59.032 45.000 0.00 0.00 0.00 4.40
493 909 0.031857 CAGCGTCACCAAAATTGCCA 59.968 50.000 0.00 0.00 0.00 4.92
494 910 0.313672 TCAGCGTCACCAAAATTGCC 59.686 50.000 0.00 0.00 0.00 4.52
495 911 1.987770 CATCAGCGTCACCAAAATTGC 59.012 47.619 0.00 0.00 0.00 3.56
496 912 3.236816 GTCATCAGCGTCACCAAAATTG 58.763 45.455 0.00 0.00 0.00 2.32
497 913 2.095768 CGTCATCAGCGTCACCAAAATT 60.096 45.455 0.00 0.00 0.00 1.82
498 914 1.464608 CGTCATCAGCGTCACCAAAAT 59.535 47.619 0.00 0.00 0.00 1.82
499 915 0.865111 CGTCATCAGCGTCACCAAAA 59.135 50.000 0.00 0.00 0.00 2.44
500 916 1.565156 GCGTCATCAGCGTCACCAAA 61.565 55.000 0.00 0.00 0.00 3.28
501 917 2.027073 GCGTCATCAGCGTCACCAA 61.027 57.895 0.00 0.00 0.00 3.67
502 918 2.432456 GCGTCATCAGCGTCACCA 60.432 61.111 0.00 0.00 0.00 4.17
503 919 2.432456 TGCGTCATCAGCGTCACC 60.432 61.111 0.00 0.00 37.44 4.02
504 920 1.284982 AACTGCGTCATCAGCGTCAC 61.285 55.000 0.00 0.00 37.59 3.67
505 921 0.599991 AAACTGCGTCATCAGCGTCA 60.600 50.000 0.00 0.00 37.59 4.35
506 922 0.093705 GAAACTGCGTCATCAGCGTC 59.906 55.000 0.00 0.00 37.59 5.19
507 923 0.319900 AGAAACTGCGTCATCAGCGT 60.320 50.000 0.00 0.00 37.59 5.07
508 924 1.629013 TAGAAACTGCGTCATCAGCG 58.371 50.000 0.00 0.00 37.59 5.18
509 925 3.242543 CCATTAGAAACTGCGTCATCAGC 60.243 47.826 0.00 0.00 37.59 4.26
510 926 3.242543 GCCATTAGAAACTGCGTCATCAG 60.243 47.826 0.00 0.00 39.86 2.90
511 927 2.677836 GCCATTAGAAACTGCGTCATCA 59.322 45.455 0.00 0.00 0.00 3.07
512 928 2.677836 TGCCATTAGAAACTGCGTCATC 59.322 45.455 0.00 0.00 0.00 2.92
513 929 2.710377 TGCCATTAGAAACTGCGTCAT 58.290 42.857 0.00 0.00 0.00 3.06
514 930 2.177394 TGCCATTAGAAACTGCGTCA 57.823 45.000 0.00 0.00 0.00 4.35
515 931 3.764885 ATTGCCATTAGAAACTGCGTC 57.235 42.857 0.00 0.00 0.00 5.19
516 932 4.519540 AAATTGCCATTAGAAACTGCGT 57.480 36.364 0.00 0.00 0.00 5.24
517 933 6.942886 TTAAAATTGCCATTAGAAACTGCG 57.057 33.333 0.00 0.00 0.00 5.18
518 934 8.382875 GTCATTAAAATTGCCATTAGAAACTGC 58.617 33.333 0.00 0.00 0.00 4.40
519 935 8.586273 CGTCATTAAAATTGCCATTAGAAACTG 58.414 33.333 0.00 0.00 0.00 3.16
520 936 7.275560 GCGTCATTAAAATTGCCATTAGAAACT 59.724 33.333 0.00 0.00 0.00 2.66
521 937 7.391016 GCGTCATTAAAATTGCCATTAGAAAC 58.609 34.615 0.00 0.00 0.00 2.78
522 938 6.252441 CGCGTCATTAAAATTGCCATTAGAAA 59.748 34.615 0.00 0.00 0.00 2.52
523 939 5.741510 CGCGTCATTAAAATTGCCATTAGAA 59.258 36.000 0.00 0.00 0.00 2.10
524 940 5.065346 TCGCGTCATTAAAATTGCCATTAGA 59.935 36.000 5.77 0.00 0.00 2.10
525 941 5.171337 GTCGCGTCATTAAAATTGCCATTAG 59.829 40.000 5.77 0.00 0.00 1.73
526 942 5.031578 GTCGCGTCATTAAAATTGCCATTA 58.968 37.500 5.77 0.00 0.00 1.90
527 943 3.857093 GTCGCGTCATTAAAATTGCCATT 59.143 39.130 5.77 0.00 0.00 3.16
528 944 3.434637 GTCGCGTCATTAAAATTGCCAT 58.565 40.909 5.77 0.00 0.00 4.40
529 945 2.726373 CGTCGCGTCATTAAAATTGCCA 60.726 45.455 5.77 0.00 0.00 4.92
530 946 1.837747 CGTCGCGTCATTAAAATTGCC 59.162 47.619 5.77 0.00 0.00 4.52
531 947 2.764768 TCGTCGCGTCATTAAAATTGC 58.235 42.857 5.77 0.00 0.00 3.56
532 948 4.331137 ACATCGTCGCGTCATTAAAATTG 58.669 39.130 5.77 0.00 0.00 2.32
533 949 4.092237 TGACATCGTCGCGTCATTAAAATT 59.908 37.500 5.77 0.00 37.23 1.82
534 950 3.615056 TGACATCGTCGCGTCATTAAAAT 59.385 39.130 5.77 0.00 37.23 1.82
535 951 2.987821 TGACATCGTCGCGTCATTAAAA 59.012 40.909 5.77 0.00 37.23 1.52
536 952 2.597520 TGACATCGTCGCGTCATTAAA 58.402 42.857 5.77 0.00 37.23 1.52
537 953 2.265647 TGACATCGTCGCGTCATTAA 57.734 45.000 5.77 0.00 37.23 1.40
538 954 2.265647 TTGACATCGTCGCGTCATTA 57.734 45.000 15.25 2.69 41.55 1.90
539 955 1.640428 ATTGACATCGTCGCGTCATT 58.360 45.000 15.25 10.58 41.55 2.57
540 956 1.640428 AATTGACATCGTCGCGTCAT 58.360 45.000 15.25 2.69 41.55 3.06
541 957 1.424403 AAATTGACATCGTCGCGTCA 58.576 45.000 5.77 11.77 40.30 4.35
542 958 2.503943 AAAATTGACATCGTCGCGTC 57.496 45.000 5.77 0.00 34.95 5.19
543 959 2.991190 ACTAAAATTGACATCGTCGCGT 59.009 40.909 5.77 0.00 34.95 6.01
544 960 3.634730 ACTAAAATTGACATCGTCGCG 57.365 42.857 0.00 0.00 34.95 5.87
545 961 4.088648 CCAACTAAAATTGACATCGTCGC 58.911 43.478 0.00 0.00 34.95 5.19
546 962 4.088648 GCCAACTAAAATTGACATCGTCG 58.911 43.478 0.00 0.00 34.95 5.12
547 963 5.041951 TGCCAACTAAAATTGACATCGTC 57.958 39.130 0.00 0.00 0.00 4.20
548 964 5.446143 TTGCCAACTAAAATTGACATCGT 57.554 34.783 0.00 0.00 0.00 3.73
549 965 4.324402 GCTTGCCAACTAAAATTGACATCG 59.676 41.667 0.00 0.00 0.00 3.84
550 966 5.229423 TGCTTGCCAACTAAAATTGACATC 58.771 37.500 0.00 0.00 0.00 3.06
551 967 5.212532 TGCTTGCCAACTAAAATTGACAT 57.787 34.783 0.00 0.00 0.00 3.06
552 968 4.662468 TGCTTGCCAACTAAAATTGACA 57.338 36.364 0.00 0.00 0.00 3.58
553 969 5.119125 GTCATGCTTGCCAACTAAAATTGAC 59.881 40.000 0.00 0.00 0.00 3.18
554 970 5.221402 TGTCATGCTTGCCAACTAAAATTGA 60.221 36.000 0.00 0.00 0.00 2.57
555 971 4.989797 TGTCATGCTTGCCAACTAAAATTG 59.010 37.500 0.00 0.00 0.00 2.32
556 972 5.212532 TGTCATGCTTGCCAACTAAAATT 57.787 34.783 0.00 0.00 0.00 1.82
557 973 4.870123 TGTCATGCTTGCCAACTAAAAT 57.130 36.364 0.00 0.00 0.00 1.82
558 974 4.099266 AGTTGTCATGCTTGCCAACTAAAA 59.901 37.500 22.76 0.00 46.96 1.52
559 975 3.636300 AGTTGTCATGCTTGCCAACTAAA 59.364 39.130 22.76 0.00 46.96 1.85
560 976 3.221771 AGTTGTCATGCTTGCCAACTAA 58.778 40.909 22.76 0.86 46.96 2.24
561 977 2.862541 AGTTGTCATGCTTGCCAACTA 58.137 42.857 22.76 0.00 46.96 2.24
562 978 1.696063 AGTTGTCATGCTTGCCAACT 58.304 45.000 19.67 19.67 44.79 3.16
563 979 1.336240 GGAGTTGTCATGCTTGCCAAC 60.336 52.381 16.19 16.19 41.00 3.77
564 980 0.961019 GGAGTTGTCATGCTTGCCAA 59.039 50.000 0.00 0.00 0.00 4.52
565 981 1.236616 CGGAGTTGTCATGCTTGCCA 61.237 55.000 0.00 0.00 0.00 4.92
566 982 1.237285 ACGGAGTTGTCATGCTTGCC 61.237 55.000 0.00 0.00 37.78 4.52
567 983 0.110056 CACGGAGTTGTCATGCTTGC 60.110 55.000 0.00 0.00 41.61 4.01
568 984 0.110056 GCACGGAGTTGTCATGCTTG 60.110 55.000 0.00 0.00 41.61 4.01
569 985 0.250467 AGCACGGAGTTGTCATGCTT 60.250 50.000 0.00 0.00 41.58 3.91
570 986 0.671781 GAGCACGGAGTTGTCATGCT 60.672 55.000 0.00 0.00 45.02 3.79
571 987 0.950555 TGAGCACGGAGTTGTCATGC 60.951 55.000 0.00 0.00 41.61 4.06
572 988 1.511850 TTGAGCACGGAGTTGTCATG 58.488 50.000 0.00 0.00 41.61 3.07
573 989 2.079158 CATTGAGCACGGAGTTGTCAT 58.921 47.619 0.00 0.00 41.61 3.06
574 990 1.202639 ACATTGAGCACGGAGTTGTCA 60.203 47.619 0.00 0.00 41.61 3.58
575 991 1.512926 ACATTGAGCACGGAGTTGTC 58.487 50.000 0.00 0.00 41.61 3.18
576 992 2.831685 TACATTGAGCACGGAGTTGT 57.168 45.000 0.00 0.00 41.61 3.32
577 993 4.685169 AAATACATTGAGCACGGAGTTG 57.315 40.909 0.00 0.00 41.61 3.16
578 994 4.518970 ACAAAATACATTGAGCACGGAGTT 59.481 37.500 0.00 0.00 34.12 3.01
579 995 4.072131 ACAAAATACATTGAGCACGGAGT 58.928 39.130 0.00 0.00 35.92 3.85
580 996 4.406069 CACAAAATACATTGAGCACGGAG 58.594 43.478 0.00 0.00 34.38 4.63
581 997 3.365868 GCACAAAATACATTGAGCACGGA 60.366 43.478 4.89 0.00 43.53 4.69
582 998 2.916716 GCACAAAATACATTGAGCACGG 59.083 45.455 4.89 0.00 43.53 4.94
583 999 2.916716 GGCACAAAATACATTGAGCACG 59.083 45.455 10.66 0.00 45.12 5.34
584 1000 3.911868 TGGCACAAAATACATTGAGCAC 58.088 40.909 10.66 2.77 45.12 4.40
585 1001 3.825585 TCTGGCACAAAATACATTGAGCA 59.174 39.130 10.66 0.00 45.12 4.26
586 1002 4.439305 TCTGGCACAAAATACATTGAGC 57.561 40.909 1.59 1.59 43.40 4.26
587 1003 7.894376 ATTTTCTGGCACAAAATACATTGAG 57.106 32.000 11.12 0.00 38.70 3.02
588 1004 7.307870 GCAATTTTCTGGCACAAAATACATTGA 60.308 33.333 12.83 0.00 38.70 2.57
589 1005 6.797995 GCAATTTTCTGGCACAAAATACATTG 59.202 34.615 12.83 9.75 38.70 2.82
590 1006 6.072563 GGCAATTTTCTGGCACAAAATACATT 60.073 34.615 12.83 0.00 41.38 2.71
591 1007 5.412286 GGCAATTTTCTGGCACAAAATACAT 59.588 36.000 12.83 0.00 41.38 2.29
592 1008 4.754114 GGCAATTTTCTGGCACAAAATACA 59.246 37.500 12.83 0.00 41.38 2.29
593 1009 4.143137 CGGCAATTTTCTGGCACAAAATAC 60.143 41.667 12.83 8.88 41.82 1.89
594 1010 3.993081 CGGCAATTTTCTGGCACAAAATA 59.007 39.130 12.83 0.00 41.82 1.40
595 1011 2.807392 CGGCAATTTTCTGGCACAAAAT 59.193 40.909 7.53 7.53 41.82 1.82
596 1012 2.208431 CGGCAATTTTCTGGCACAAAA 58.792 42.857 3.14 3.14 41.82 2.44
597 1013 1.137872 ACGGCAATTTTCTGGCACAAA 59.862 42.857 0.00 0.00 41.82 2.83
598 1014 0.749649 ACGGCAATTTTCTGGCACAA 59.250 45.000 0.00 0.00 41.82 3.33
599 1015 0.031857 CACGGCAATTTTCTGGCACA 59.968 50.000 0.00 0.00 41.82 4.57
600 1016 0.031994 ACACGGCAATTTTCTGGCAC 59.968 50.000 0.00 0.00 41.82 5.01
601 1017 0.031857 CACACGGCAATTTTCTGGCA 59.968 50.000 0.00 0.00 41.82 4.92
602 1018 0.031994 ACACACGGCAATTTTCTGGC 59.968 50.000 0.00 0.00 38.47 4.85
603 1019 1.066908 ACACACACGGCAATTTTCTGG 59.933 47.619 0.00 0.00 0.00 3.86
604 1020 2.223456 TGACACACACGGCAATTTTCTG 60.223 45.455 0.00 0.00 0.00 3.02
605 1021 2.020720 TGACACACACGGCAATTTTCT 58.979 42.857 0.00 0.00 0.00 2.52
606 1022 2.483583 TGACACACACGGCAATTTTC 57.516 45.000 0.00 0.00 0.00 2.29
607 1023 2.165437 AGTTGACACACACGGCAATTTT 59.835 40.909 0.00 0.00 0.00 1.82
608 1024 1.748493 AGTTGACACACACGGCAATTT 59.252 42.857 0.00 0.00 0.00 1.82
609 1025 1.388547 AGTTGACACACACGGCAATT 58.611 45.000 0.00 0.00 0.00 2.32
610 1026 2.248280 TAGTTGACACACACGGCAAT 57.752 45.000 0.00 0.00 0.00 3.56
611 1027 2.025589 TTAGTTGACACACACGGCAA 57.974 45.000 0.00 0.00 0.00 4.52
612 1028 2.025589 TTTAGTTGACACACACGGCA 57.974 45.000 0.00 0.00 0.00 5.69
613 1029 3.619233 AATTTAGTTGACACACACGGC 57.381 42.857 0.00 0.00 0.00 5.68
614 1030 3.728718 GCAAATTTAGTTGACACACACGG 59.271 43.478 0.00 0.00 0.00 4.94
615 1031 3.728718 GGCAAATTTAGTTGACACACACG 59.271 43.478 0.00 0.00 36.46 4.49
616 1032 4.677584 TGGCAAATTTAGTTGACACACAC 58.322 39.130 0.00 0.00 41.69 3.82
617 1033 4.991153 TGGCAAATTTAGTTGACACACA 57.009 36.364 0.00 0.00 41.69 3.72
622 1038 5.634859 CACAAGGATGGCAAATTTAGTTGAC 59.365 40.000 0.00 0.00 37.01 3.18
623 1039 5.304101 ACACAAGGATGGCAAATTTAGTTGA 59.696 36.000 0.00 0.00 0.00 3.18
624 1040 5.540911 ACACAAGGATGGCAAATTTAGTTG 58.459 37.500 0.00 0.00 0.00 3.16
625 1041 5.304101 TGACACAAGGATGGCAAATTTAGTT 59.696 36.000 0.00 0.00 33.52 2.24
626 1042 4.832266 TGACACAAGGATGGCAAATTTAGT 59.168 37.500 0.00 0.00 33.52 2.24
627 1043 5.047802 AGTGACACAAGGATGGCAAATTTAG 60.048 40.000 8.59 0.00 40.05 1.85
628 1044 4.832266 AGTGACACAAGGATGGCAAATTTA 59.168 37.500 8.59 0.00 40.05 1.40
629 1045 3.642848 AGTGACACAAGGATGGCAAATTT 59.357 39.130 8.59 0.00 40.05 1.82
630 1046 3.233507 AGTGACACAAGGATGGCAAATT 58.766 40.909 8.59 0.00 40.05 1.82
631 1047 2.880443 AGTGACACAAGGATGGCAAAT 58.120 42.857 8.59 0.00 40.05 2.32
632 1048 2.363306 AGTGACACAAGGATGGCAAA 57.637 45.000 8.59 0.00 40.05 3.68
633 1049 3.500448 TTAGTGACACAAGGATGGCAA 57.500 42.857 8.59 0.00 40.05 4.52
634 1050 3.500448 TTTAGTGACACAAGGATGGCA 57.500 42.857 8.59 0.00 34.28 4.92
635 1051 3.364964 CGTTTTAGTGACACAAGGATGGC 60.365 47.826 8.59 0.00 0.00 4.40
636 1052 3.364964 GCGTTTTAGTGACACAAGGATGG 60.365 47.826 8.59 0.00 0.00 3.51
637 1053 3.364964 GGCGTTTTAGTGACACAAGGATG 60.365 47.826 8.59 0.00 0.00 3.51
638 1054 2.812011 GGCGTTTTAGTGACACAAGGAT 59.188 45.455 8.59 0.00 0.00 3.24
639 1055 2.215196 GGCGTTTTAGTGACACAAGGA 58.785 47.619 8.59 0.00 0.00 3.36
640 1056 1.265905 GGGCGTTTTAGTGACACAAGG 59.734 52.381 8.59 0.70 0.00 3.61
641 1057 1.265905 GGGGCGTTTTAGTGACACAAG 59.734 52.381 8.59 0.00 0.00 3.16
642 1058 1.310904 GGGGCGTTTTAGTGACACAA 58.689 50.000 8.59 0.00 0.00 3.33
643 1059 0.180642 TGGGGCGTTTTAGTGACACA 59.819 50.000 8.59 0.00 0.00 3.72
644 1060 1.467342 GATGGGGCGTTTTAGTGACAC 59.533 52.381 0.00 0.00 0.00 3.67
645 1061 1.816074 GATGGGGCGTTTTAGTGACA 58.184 50.000 0.00 0.00 0.00 3.58
646 1062 0.725117 CGATGGGGCGTTTTAGTGAC 59.275 55.000 0.00 0.00 0.00 3.67
647 1063 0.609151 TCGATGGGGCGTTTTAGTGA 59.391 50.000 0.00 0.00 0.00 3.41
648 1064 1.663695 ATCGATGGGGCGTTTTAGTG 58.336 50.000 0.00 0.00 0.00 2.74
649 1065 3.200483 GTTATCGATGGGGCGTTTTAGT 58.800 45.455 8.54 0.00 0.00 2.24
650 1066 2.220133 CGTTATCGATGGGGCGTTTTAG 59.780 50.000 8.54 0.00 39.71 1.85
651 1067 2.203401 CGTTATCGATGGGGCGTTTTA 58.797 47.619 8.54 0.00 39.71 1.52
652 1068 1.011333 CGTTATCGATGGGGCGTTTT 58.989 50.000 8.54 0.00 39.71 2.43
653 1069 0.108041 ACGTTATCGATGGGGCGTTT 60.108 50.000 8.54 0.00 40.62 3.60
654 1070 0.108041 AACGTTATCGATGGGGCGTT 60.108 50.000 18.27 18.27 40.62 4.84
655 1071 0.108041 AAACGTTATCGATGGGGCGT 60.108 50.000 8.54 10.00 40.62 5.68
656 1072 0.303493 CAAACGTTATCGATGGGGCG 59.697 55.000 8.54 9.37 40.62 6.13
657 1073 0.661020 CCAAACGTTATCGATGGGGC 59.339 55.000 8.54 0.00 40.70 5.80
658 1074 2.032680 ACCAAACGTTATCGATGGGG 57.967 50.000 17.82 9.12 44.73 4.96
659 1075 2.353579 GGAACCAAACGTTATCGATGGG 59.646 50.000 17.82 10.29 44.73 4.00
660 1076 3.004171 TGGAACCAAACGTTATCGATGG 58.996 45.455 13.22 13.22 45.34 3.51
661 1077 4.671880 TTGGAACCAAACGTTATCGATG 57.328 40.909 8.54 0.00 40.62 3.84
672 1088 1.461559 ACCGAACGTTTGGAACCAAA 58.538 45.000 36.08 14.02 42.77 3.28
673 1089 2.322355 TACCGAACGTTTGGAACCAA 57.678 45.000 36.08 15.50 35.58 3.67
674 1090 2.547299 ATACCGAACGTTTGGAACCA 57.453 45.000 36.08 19.68 35.58 3.67
675 1091 3.902261 AAATACCGAACGTTTGGAACC 57.098 42.857 36.08 6.96 35.58 3.62
676 1092 6.168164 TGATAAATACCGAACGTTTGGAAC 57.832 37.500 36.08 15.64 35.58 3.62
677 1093 6.988622 ATGATAAATACCGAACGTTTGGAA 57.011 33.333 36.08 17.80 35.58 3.53
678 1094 6.988622 AATGATAAATACCGAACGTTTGGA 57.011 33.333 36.08 21.60 35.58 3.53
679 1095 7.539366 ACAAAATGATAAATACCGAACGTTTGG 59.461 33.333 29.51 29.51 37.75 3.28
680 1096 8.442605 ACAAAATGATAAATACCGAACGTTTG 57.557 30.769 8.68 8.68 0.00 2.93
681 1097 9.465985 AAACAAAATGATAAATACCGAACGTTT 57.534 25.926 0.46 0.00 0.00 3.60
707 1123 8.199449 GCTGGAATTCCAATTGATTCTCAAATA 58.801 33.333 26.87 0.00 46.97 1.40
708 1124 7.046033 GCTGGAATTCCAATTGATTCTCAAAT 58.954 34.615 26.87 0.00 46.97 2.32
709 1125 6.211986 AGCTGGAATTCCAATTGATTCTCAAA 59.788 34.615 26.87 0.06 46.97 2.69
710 1126 5.718130 AGCTGGAATTCCAATTGATTCTCAA 59.282 36.000 26.87 0.50 46.97 3.02
711 1127 5.126545 CAGCTGGAATTCCAATTGATTCTCA 59.873 40.000 26.87 8.42 46.97 3.27
712 1128 5.359009 TCAGCTGGAATTCCAATTGATTCTC 59.641 40.000 26.87 8.44 46.97 2.87
713 1129 5.266788 TCAGCTGGAATTCCAATTGATTCT 58.733 37.500 26.87 12.37 46.97 2.40
714 1130 5.587388 TCAGCTGGAATTCCAATTGATTC 57.413 39.130 26.87 9.00 46.97 2.52
715 1131 5.482878 AGTTCAGCTGGAATTCCAATTGATT 59.517 36.000 28.01 20.55 46.97 2.57
716 1132 5.021458 AGTTCAGCTGGAATTCCAATTGAT 58.979 37.500 28.01 16.14 46.97 2.57
717 1133 4.219070 CAGTTCAGCTGGAATTCCAATTGA 59.781 41.667 26.87 26.13 46.97 2.57
718 1134 4.219070 TCAGTTCAGCTGGAATTCCAATTG 59.781 41.667 26.87 24.57 46.97 2.32
719 1135 4.410099 TCAGTTCAGCTGGAATTCCAATT 58.590 39.130 26.87 15.43 46.97 2.32
743 1159 0.320247 CAGCTTCCTTGCGAGAGTGT 60.320 55.000 1.22 0.00 38.13 3.55
748 1164 1.074752 GAGTTCAGCTTCCTTGCGAG 58.925 55.000 0.00 0.00 38.13 5.03
750 1166 1.196354 CTTGAGTTCAGCTTCCTTGCG 59.804 52.381 0.00 0.00 38.13 4.85
754 1170 0.037447 GGGCTTGAGTTCAGCTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
755 1171 0.250901 TGGGCTTGAGTTCAGCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
756 1172 1.831580 ATGGGCTTGAGTTCAGCTTC 58.168 50.000 0.00 0.00 0.00 3.86
759 1175 1.203287 GGAAATGGGCTTGAGTTCAGC 59.797 52.381 0.00 0.00 0.00 4.26
760 1176 2.229784 GTGGAAATGGGCTTGAGTTCAG 59.770 50.000 0.00 0.00 0.00 3.02
763 1179 1.147817 AGGTGGAAATGGGCTTGAGTT 59.852 47.619 0.00 0.00 0.00 3.01
771 1187 2.877975 CAGCTCAGGTGGAAATGGG 58.122 57.895 0.00 0.00 0.00 4.00
781 1197 3.359033 TCAATTCCAATTCCAGCTCAGG 58.641 45.455 0.00 0.00 0.00 3.86
789 1206 5.359756 GTTATGGGCTTCAATTCCAATTCC 58.640 41.667 0.00 0.00 33.90 3.01
827 1323 1.801913 CGACCTCCTTGCGACTTCG 60.802 63.158 0.00 0.00 43.27 3.79
828 1324 2.095252 GCGACCTCCTTGCGACTTC 61.095 63.158 0.00 0.00 0.00 3.01
829 1325 2.048127 GCGACCTCCTTGCGACTT 60.048 61.111 0.00 0.00 0.00 3.01
867 1363 2.973082 GCGCCATTTTTGGGAGCT 59.027 55.556 0.00 0.00 46.20 4.09
874 1370 1.329913 GGGGAGGATGCGCCATTTTT 61.330 55.000 9.60 0.00 40.36 1.94
884 1380 0.178918 GAGTAGGGGAGGGGAGGATG 60.179 65.000 0.00 0.00 0.00 3.51
885 1381 0.633835 TGAGTAGGGGAGGGGAGGAT 60.634 60.000 0.00 0.00 0.00 3.24
939 1440 2.203582 GGGGGACAAAAGGCCGTT 60.204 61.111 0.00 0.00 0.00 4.44
1034 1537 1.993391 CCTGGGCTAACGGAAGGGA 60.993 63.158 0.00 0.00 0.00 4.20
1035 1538 2.590092 CCTGGGCTAACGGAAGGG 59.410 66.667 0.00 0.00 0.00 3.95
1484 1996 2.356313 ACTTGAGTGCGACGCAGG 60.356 61.111 25.21 13.11 40.08 4.85
1494 2006 0.179029 CAACGAACCCCCACTTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
1674 2186 3.024043 CTGCAAAACACGCGCCAC 61.024 61.111 5.73 0.00 0.00 5.01
1710 2222 2.045926 ACCTCATTCGGGTGCTGC 60.046 61.111 0.00 0.00 35.51 5.25
1716 2228 1.811266 CAGCGTCACCTCATTCGGG 60.811 63.158 0.00 0.00 0.00 5.14
1809 2321 1.454847 GCTTCCACCAACACCACCA 60.455 57.895 0.00 0.00 0.00 4.17
1911 2423 2.834549 CCAGGAGTACACATCCTTGACT 59.165 50.000 0.00 0.00 45.13 3.41
1965 2477 0.107945 GGGCTGCACTCTCCAAGTAG 60.108 60.000 0.50 0.00 36.07 2.57
1966 2478 0.835971 TGGGCTGCACTCTCCAAGTA 60.836 55.000 2.50 0.00 36.07 2.24
1983 2495 3.624777 AGGCATATCCTCAAACAGTTGG 58.375 45.455 0.00 0.00 43.20 3.77
2340 2859 1.679641 CACAGCATGGGCCATGACA 60.680 57.895 42.91 6.86 43.81 3.58
2454 2973 6.108687 TGAAACTAATCCACTATGACTGCAG 58.891 40.000 13.48 13.48 0.00 4.41
2469 2988 3.009143 ACCGCTTCCCTTCTGAAACTAAT 59.991 43.478 0.00 0.00 0.00 1.73
2486 3005 9.150348 CCATTTTCATTTCTTTAAAATACCGCT 57.850 29.630 0.00 0.00 32.89 5.52
2487 3006 8.387354 CCCATTTTCATTTCTTTAAAATACCGC 58.613 33.333 0.00 0.00 32.89 5.68
2693 5822 6.173339 AGTTTTACTAGCTTATCTGCAGCAA 58.827 36.000 9.47 4.58 39.99 3.91
2725 5854 5.127194 TGAGTACATAGATTCCACTGTCCAC 59.873 44.000 0.00 0.00 0.00 4.02
2748 5877 8.645730 TTTTACTTGCATATATTTGGCACATG 57.354 30.769 0.00 0.00 39.30 3.21
2945 6074 9.719355 GAACATAACCTTCCAATTTTAAATGGT 57.281 29.630 7.54 0.00 37.94 3.55
3190 6382 7.888021 ACATGACAAAATCTGACCAAACCTATA 59.112 33.333 0.00 0.00 0.00 1.31
3401 6653 4.503714 TGGATACTGGAATGGAAGGAAC 57.496 45.455 0.00 0.00 37.61 3.62
3430 6682 6.916360 AACATTGAGATAGCCTTTCCAAAA 57.084 33.333 0.00 0.00 0.00 2.44
3494 6746 8.347771 ACATTCATGATTCAATCCTTGATAACG 58.652 33.333 0.00 0.00 39.84 3.18
3694 6972 7.865706 AGGCCATACAGAGTAAAAGTAAATG 57.134 36.000 5.01 0.00 0.00 2.32
3698 6976 7.966339 TCTTAGGCCATACAGAGTAAAAGTA 57.034 36.000 5.01 0.00 0.00 2.24
3702 6980 6.516194 GCGTATCTTAGGCCATACAGAGTAAA 60.516 42.308 5.01 0.00 33.72 2.01
3737 7015 7.665559 AGATGAGAGACTAATAGAAGGTAGCTG 59.334 40.741 0.00 0.00 0.00 4.24
3742 7020 8.499406 ACACTAGATGAGAGACTAATAGAAGGT 58.501 37.037 0.00 0.00 0.00 3.50
3750 7028 7.440505 AGGAGTACACTAGATGAGAGACTAA 57.559 40.000 0.00 0.00 0.00 2.24
3768 7046 6.836714 TCACCTAGTATTCCTGTAGGAGTA 57.163 41.667 0.26 0.00 46.36 2.59
3808 7290 2.418746 CCTGTTTTGATCGGATCCGTCT 60.419 50.000 32.15 21.16 40.74 4.18
3810 7292 1.278127 ACCTGTTTTGATCGGATCCGT 59.722 47.619 32.15 20.11 40.74 4.69
3811 7293 2.024176 ACCTGTTTTGATCGGATCCG 57.976 50.000 28.62 28.62 41.35 4.18
3812 7294 3.312697 GCTTACCTGTTTTGATCGGATCC 59.687 47.826 15.06 0.00 0.00 3.36
3814 7296 3.941483 CTGCTTACCTGTTTTGATCGGAT 59.059 43.478 0.00 0.00 0.00 4.18
3815 7297 3.007506 TCTGCTTACCTGTTTTGATCGGA 59.992 43.478 0.00 0.00 0.00 4.55
3816 7298 3.334691 TCTGCTTACCTGTTTTGATCGG 58.665 45.455 0.00 0.00 0.00 4.18
3831 7316 4.041444 ACTCTGGAAACTCTGATTCTGCTT 59.959 41.667 0.00 0.00 0.00 3.91
3888 7373 3.681034 CGATCCCAGCTTGAGTCAAATCT 60.681 47.826 7.06 4.40 0.00 2.40
3893 7378 1.219124 GCGATCCCAGCTTGAGTCA 59.781 57.895 0.00 0.00 0.00 3.41
3934 7419 2.698797 GTGCTAGAGGGTGGCAACTATA 59.301 50.000 0.97 0.00 45.52 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.