Multiple sequence alignment - TraesCS4A01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G400400 chr4A 100.000 2489 0 0 1 2489 674754704 674752216 0.000000e+00 4597.0
1 TraesCS4A01G400400 chr4A 88.969 417 42 3 1 413 674624258 674623842 1.710000e-141 512.0
2 TraesCS4A01G400400 chr5A 87.349 1905 239 1 587 2489 547611863 547609959 0.000000e+00 2182.0
3 TraesCS4A01G400400 chr2A 85.594 1902 261 10 587 2480 78190851 78192747 0.000000e+00 1982.0
4 TraesCS4A01G400400 chr2A 73.560 764 165 31 1730 2474 519408949 519409694 8.830000e-65 257.0
5 TraesCS4A01G400400 chr7A 77.063 1927 377 62 587 2481 224596644 224594751 0.000000e+00 1050.0
6 TraesCS4A01G400400 chr7A 76.015 1034 224 23 653 1673 591617027 591618049 4.750000e-142 514.0
7 TraesCS4A01G400400 chr7A 85.613 424 61 0 2063 2486 720819427 720819850 1.760000e-121 446.0
8 TraesCS4A01G400400 chr7A 92.164 268 21 0 146 413 62747235 62746968 1.810000e-101 379.0
9 TraesCS4A01G400400 chr7A 83.168 101 8 5 1 92 62747350 62747250 1.590000e-12 84.2
10 TraesCS4A01G400400 chr2B 76.750 1871 384 45 636 2480 123150671 123148826 0.000000e+00 998.0
11 TraesCS4A01G400400 chr5B 76.632 1930 376 56 579 2481 626307019 626308900 0.000000e+00 996.0
12 TraesCS4A01G400400 chr5B 74.747 1683 386 33 820 2481 406536368 406534704 0.000000e+00 717.0
13 TraesCS4A01G400400 chr7D 84.512 891 135 3 1588 2477 210088221 210087333 0.000000e+00 878.0
14 TraesCS4A01G400400 chr1B 76.551 1096 232 23 625 1704 476913744 476914830 5.970000e-161 577.0
15 TraesCS4A01G400400 chr1B 82.283 254 42 1 2228 2478 476915356 476915609 1.500000e-52 217.0
16 TraesCS4A01G400400 chr6D 75.875 1057 239 16 652 1701 356796652 356795605 2.190000e-145 525.0
17 TraesCS4A01G400400 chrUn 79.767 430 68 11 1 413 91215279 91215706 6.730000e-76 294.0
18 TraesCS4A01G400400 chr3A 82.264 265 44 3 2228 2489 575130611 575130347 2.490000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G400400 chr4A 674752216 674754704 2488 True 4597 4597 100.000 1 2489 1 chr4A.!!$R2 2488
1 TraesCS4A01G400400 chr5A 547609959 547611863 1904 True 2182 2182 87.349 587 2489 1 chr5A.!!$R1 1902
2 TraesCS4A01G400400 chr2A 78190851 78192747 1896 False 1982 1982 85.594 587 2480 1 chr2A.!!$F1 1893
3 TraesCS4A01G400400 chr2A 519408949 519409694 745 False 257 257 73.560 1730 2474 1 chr2A.!!$F2 744
4 TraesCS4A01G400400 chr7A 224594751 224596644 1893 True 1050 1050 77.063 587 2481 1 chr7A.!!$R1 1894
5 TraesCS4A01G400400 chr7A 591617027 591618049 1022 False 514 514 76.015 653 1673 1 chr7A.!!$F1 1020
6 TraesCS4A01G400400 chr2B 123148826 123150671 1845 True 998 998 76.750 636 2480 1 chr2B.!!$R1 1844
7 TraesCS4A01G400400 chr5B 626307019 626308900 1881 False 996 996 76.632 579 2481 1 chr5B.!!$F1 1902
8 TraesCS4A01G400400 chr5B 406534704 406536368 1664 True 717 717 74.747 820 2481 1 chr5B.!!$R1 1661
9 TraesCS4A01G400400 chr7D 210087333 210088221 888 True 878 878 84.512 1588 2477 1 chr7D.!!$R1 889
10 TraesCS4A01G400400 chr1B 476913744 476915609 1865 False 397 577 79.417 625 2478 2 chr1B.!!$F1 1853
11 TraesCS4A01G400400 chr6D 356795605 356796652 1047 True 525 525 75.875 652 1701 1 chr6D.!!$R1 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.027455 TCACAAGCAGCGAAAACACG 59.973 50.0 0.0 0.0 0.0 4.49 F
93 94 0.034059 CGCTCAACCACTCCTCACTT 59.966 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1168 0.107066 ACATCGCATGCCTCCAATCA 60.107 50.0 13.15 0.0 0.00 2.57 R
2043 2068 0.251165 TTCTTTGGGCAGGGTAGTGC 60.251 55.0 0.00 0.0 43.19 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.736144 ATTTGCCAGTGCTCAACATG 57.264 45.000 0.00 0.00 38.71 3.21
23 24 0.032403 TTTGCCAGTGCTCAACATGC 59.968 50.000 0.00 0.00 38.71 4.06
24 25 1.108132 TTGCCAGTGCTCAACATGCA 61.108 50.000 0.00 0.00 38.71 3.96
25 26 1.108132 TGCCAGTGCTCAACATGCAA 61.108 50.000 0.00 0.00 42.41 4.08
26 27 0.665369 GCCAGTGCTCAACATGCAAC 60.665 55.000 0.00 0.00 42.41 4.17
27 28 0.669619 CCAGTGCTCAACATGCAACA 59.330 50.000 0.00 0.00 42.41 3.33
28 29 1.067364 CCAGTGCTCAACATGCAACAA 59.933 47.619 0.00 0.00 42.41 2.83
29 30 2.288579 CCAGTGCTCAACATGCAACAAT 60.289 45.455 0.00 0.00 42.41 2.71
30 31 3.057386 CCAGTGCTCAACATGCAACAATA 60.057 43.478 0.00 0.00 42.41 1.90
31 32 4.548494 CAGTGCTCAACATGCAACAATAA 58.452 39.130 0.00 0.00 42.41 1.40
32 33 4.619760 CAGTGCTCAACATGCAACAATAAG 59.380 41.667 0.00 0.00 42.41 1.73
33 34 4.520111 AGTGCTCAACATGCAACAATAAGA 59.480 37.500 0.00 0.00 42.41 2.10
34 35 5.009911 AGTGCTCAACATGCAACAATAAGAA 59.990 36.000 0.00 0.00 42.41 2.52
35 36 5.117592 GTGCTCAACATGCAACAATAAGAAC 59.882 40.000 0.00 0.00 42.41 3.01
36 37 5.009911 TGCTCAACATGCAACAATAAGAACT 59.990 36.000 0.00 0.00 37.51 3.01
37 38 6.206438 TGCTCAACATGCAACAATAAGAACTA 59.794 34.615 0.00 0.00 37.51 2.24
38 39 7.083858 GCTCAACATGCAACAATAAGAACTAA 58.916 34.615 0.00 0.00 0.00 2.24
39 40 7.756722 GCTCAACATGCAACAATAAGAACTAAT 59.243 33.333 0.00 0.00 0.00 1.73
64 65 9.788889 ATAATTCAGAGAATATCATCACAAGCA 57.211 29.630 0.00 0.00 0.00 3.91
65 66 7.731882 ATTCAGAGAATATCATCACAAGCAG 57.268 36.000 0.00 0.00 0.00 4.24
66 67 5.055144 TCAGAGAATATCATCACAAGCAGC 58.945 41.667 0.00 0.00 0.00 5.25
67 68 4.056740 AGAGAATATCATCACAAGCAGCG 58.943 43.478 0.00 0.00 0.00 5.18
68 69 4.053983 GAGAATATCATCACAAGCAGCGA 58.946 43.478 0.00 0.00 0.00 4.93
69 70 4.445453 AGAATATCATCACAAGCAGCGAA 58.555 39.130 0.00 0.00 0.00 4.70
70 71 4.877823 AGAATATCATCACAAGCAGCGAAA 59.122 37.500 0.00 0.00 0.00 3.46
71 72 5.355071 AGAATATCATCACAAGCAGCGAAAA 59.645 36.000 0.00 0.00 0.00 2.29
72 73 2.686558 TCATCACAAGCAGCGAAAAC 57.313 45.000 0.00 0.00 0.00 2.43
73 74 1.946081 TCATCACAAGCAGCGAAAACA 59.054 42.857 0.00 0.00 0.00 2.83
74 75 2.046313 CATCACAAGCAGCGAAAACAC 58.954 47.619 0.00 0.00 0.00 3.32
75 76 0.027455 TCACAAGCAGCGAAAACACG 59.973 50.000 0.00 0.00 0.00 4.49
84 85 3.142796 CGAAAACACGCTCAACCAC 57.857 52.632 0.00 0.00 0.00 4.16
85 86 0.655733 CGAAAACACGCTCAACCACT 59.344 50.000 0.00 0.00 0.00 4.00
86 87 1.332904 CGAAAACACGCTCAACCACTC 60.333 52.381 0.00 0.00 0.00 3.51
87 88 1.002792 GAAAACACGCTCAACCACTCC 60.003 52.381 0.00 0.00 0.00 3.85
88 89 0.180406 AAACACGCTCAACCACTCCT 59.820 50.000 0.00 0.00 0.00 3.69
89 90 0.249911 AACACGCTCAACCACTCCTC 60.250 55.000 0.00 0.00 0.00 3.71
90 91 1.367471 CACGCTCAACCACTCCTCA 59.633 57.895 0.00 0.00 0.00 3.86
91 92 0.946221 CACGCTCAACCACTCCTCAC 60.946 60.000 0.00 0.00 0.00 3.51
92 93 1.115930 ACGCTCAACCACTCCTCACT 61.116 55.000 0.00 0.00 0.00 3.41
93 94 0.034059 CGCTCAACCACTCCTCACTT 59.966 55.000 0.00 0.00 0.00 3.16
94 95 1.517242 GCTCAACCACTCCTCACTTG 58.483 55.000 0.00 0.00 0.00 3.16
95 96 1.070758 GCTCAACCACTCCTCACTTGA 59.929 52.381 0.00 0.00 0.00 3.02
96 97 2.760374 CTCAACCACTCCTCACTTGAC 58.240 52.381 0.00 0.00 0.00 3.18
97 98 1.068588 TCAACCACTCCTCACTTGACG 59.931 52.381 0.00 0.00 0.00 4.35
98 99 0.249911 AACCACTCCTCACTTGACGC 60.250 55.000 0.00 0.00 0.00 5.19
99 100 1.374758 CCACTCCTCACTTGACGCC 60.375 63.158 0.00 0.00 0.00 5.68
100 101 1.668294 CACTCCTCACTTGACGCCT 59.332 57.895 0.00 0.00 0.00 5.52
101 102 0.034059 CACTCCTCACTTGACGCCTT 59.966 55.000 0.00 0.00 0.00 4.35
102 103 0.034059 ACTCCTCACTTGACGCCTTG 59.966 55.000 0.00 0.00 0.00 3.61
103 104 1.294659 CTCCTCACTTGACGCCTTGC 61.295 60.000 0.00 0.00 0.00 4.01
104 105 1.302033 CCTCACTTGACGCCTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
105 106 0.037326 CCTCACTTGACGCCTTGCTA 60.037 55.000 0.00 0.00 0.00 3.49
106 107 1.406069 CCTCACTTGACGCCTTGCTAT 60.406 52.381 0.00 0.00 0.00 2.97
107 108 2.159099 CCTCACTTGACGCCTTGCTATA 60.159 50.000 0.00 0.00 0.00 1.31
108 109 3.493350 CCTCACTTGACGCCTTGCTATAT 60.493 47.826 0.00 0.00 0.00 0.86
109 110 4.122776 CTCACTTGACGCCTTGCTATATT 58.877 43.478 0.00 0.00 0.00 1.28
110 111 5.270893 TCACTTGACGCCTTGCTATATTA 57.729 39.130 0.00 0.00 0.00 0.98
111 112 5.666462 TCACTTGACGCCTTGCTATATTAA 58.334 37.500 0.00 0.00 0.00 1.40
112 113 6.110033 TCACTTGACGCCTTGCTATATTAAA 58.890 36.000 0.00 0.00 0.00 1.52
113 114 6.765989 TCACTTGACGCCTTGCTATATTAAAT 59.234 34.615 0.00 0.00 0.00 1.40
114 115 7.042051 TCACTTGACGCCTTGCTATATTAAATC 60.042 37.037 0.00 0.00 0.00 2.17
115 116 6.765989 ACTTGACGCCTTGCTATATTAAATCA 59.234 34.615 0.00 0.00 0.00 2.57
116 117 6.539649 TGACGCCTTGCTATATTAAATCAC 57.460 37.500 0.00 0.00 0.00 3.06
117 118 6.052360 TGACGCCTTGCTATATTAAATCACA 58.948 36.000 0.00 0.00 0.00 3.58
118 119 6.540551 TGACGCCTTGCTATATTAAATCACAA 59.459 34.615 0.00 0.00 0.00 3.33
119 120 6.959361 ACGCCTTGCTATATTAAATCACAAG 58.041 36.000 0.00 0.00 34.30 3.16
120 121 5.853282 CGCCTTGCTATATTAAATCACAAGC 59.147 40.000 0.00 0.00 33.42 4.01
121 122 6.513230 CGCCTTGCTATATTAAATCACAAGCA 60.513 38.462 0.00 0.00 36.76 3.91
122 123 6.860023 GCCTTGCTATATTAAATCACAAGCAG 59.140 38.462 0.00 0.00 39.43 4.24
123 124 7.469181 GCCTTGCTATATTAAATCACAAGCAGT 60.469 37.037 0.00 0.00 39.43 4.40
133 134 3.879912 ACAAGCAGTGAAAGCATGC 57.120 47.368 10.51 10.51 40.29 4.06
137 138 3.396491 GCAGTGAAAGCATGCTCAC 57.604 52.632 25.05 25.05 41.90 3.51
138 139 0.109412 GCAGTGAAAGCATGCTCACC 60.109 55.000 27.37 17.74 42.45 4.02
139 140 1.241165 CAGTGAAAGCATGCTCACCA 58.759 50.000 27.37 19.68 42.45 4.17
140 141 1.068748 CAGTGAAAGCATGCTCACCAC 60.069 52.381 27.37 26.83 42.45 4.16
141 142 0.953727 GTGAAAGCATGCTCACCACA 59.046 50.000 27.63 18.59 36.72 4.17
142 143 1.337703 GTGAAAGCATGCTCACCACAA 59.662 47.619 27.63 9.51 36.72 3.33
143 144 1.610038 TGAAAGCATGCTCACCACAAG 59.390 47.619 22.93 0.00 0.00 3.16
144 145 0.963962 AAAGCATGCTCACCACAAGG 59.036 50.000 22.93 0.00 42.21 3.61
145 146 1.530013 AAGCATGCTCACCACAAGGC 61.530 55.000 22.93 0.00 39.06 4.35
146 147 2.270257 GCATGCTCACCACAAGGCA 61.270 57.895 11.37 0.00 39.06 4.75
147 148 1.808531 GCATGCTCACCACAAGGCAA 61.809 55.000 11.37 0.00 39.06 4.52
148 149 0.675083 CATGCTCACCACAAGGCAAA 59.325 50.000 0.00 0.00 39.06 3.68
149 150 1.274167 CATGCTCACCACAAGGCAAAT 59.726 47.619 0.00 0.00 39.06 2.32
150 151 0.961019 TGCTCACCACAAGGCAAATC 59.039 50.000 0.00 0.00 39.06 2.17
151 152 0.961019 GCTCACCACAAGGCAAATCA 59.039 50.000 0.00 0.00 39.06 2.57
152 153 1.340889 GCTCACCACAAGGCAAATCAA 59.659 47.619 0.00 0.00 39.06 2.57
153 154 2.224018 GCTCACCACAAGGCAAATCAAA 60.224 45.455 0.00 0.00 39.06 2.69
154 155 3.555586 GCTCACCACAAGGCAAATCAAAT 60.556 43.478 0.00 0.00 39.06 2.32
155 156 4.240096 CTCACCACAAGGCAAATCAAATC 58.760 43.478 0.00 0.00 39.06 2.17
156 157 3.896888 TCACCACAAGGCAAATCAAATCT 59.103 39.130 0.00 0.00 39.06 2.40
157 158 4.022068 TCACCACAAGGCAAATCAAATCTC 60.022 41.667 0.00 0.00 39.06 2.75
158 159 3.259123 ACCACAAGGCAAATCAAATCTCC 59.741 43.478 0.00 0.00 39.06 3.71
159 160 3.258872 CCACAAGGCAAATCAAATCTCCA 59.741 43.478 0.00 0.00 0.00 3.86
160 161 4.240096 CACAAGGCAAATCAAATCTCCAC 58.760 43.478 0.00 0.00 0.00 4.02
161 162 3.896888 ACAAGGCAAATCAAATCTCCACA 59.103 39.130 0.00 0.00 0.00 4.17
162 163 4.021719 ACAAGGCAAATCAAATCTCCACAG 60.022 41.667 0.00 0.00 0.00 3.66
163 164 2.494870 AGGCAAATCAAATCTCCACAGC 59.505 45.455 0.00 0.00 0.00 4.40
164 165 2.494870 GGCAAATCAAATCTCCACAGCT 59.505 45.455 0.00 0.00 0.00 4.24
165 166 3.508762 GCAAATCAAATCTCCACAGCTG 58.491 45.455 13.48 13.48 0.00 4.24
166 167 3.192001 GCAAATCAAATCTCCACAGCTGA 59.808 43.478 23.35 0.00 0.00 4.26
167 168 4.674623 GCAAATCAAATCTCCACAGCTGAG 60.675 45.833 23.35 13.32 0.00 3.35
168 169 4.564782 AATCAAATCTCCACAGCTGAGA 57.435 40.909 23.35 13.66 42.68 3.27
170 171 5.883685 ATCAAATCTCCACAGCTGAGATA 57.116 39.130 23.35 9.73 46.29 1.98
171 172 5.883685 TCAAATCTCCACAGCTGAGATAT 57.116 39.130 23.35 11.60 46.29 1.63
172 173 6.983906 TCAAATCTCCACAGCTGAGATATA 57.016 37.500 23.35 4.91 46.29 0.86
173 174 7.550597 TCAAATCTCCACAGCTGAGATATAT 57.449 36.000 23.35 5.93 46.29 0.86
174 175 7.971201 TCAAATCTCCACAGCTGAGATATATT 58.029 34.615 23.35 12.63 46.29 1.28
175 176 9.093458 TCAAATCTCCACAGCTGAGATATATTA 57.907 33.333 23.35 1.27 46.29 0.98
176 177 9.368674 CAAATCTCCACAGCTGAGATATATTAG 57.631 37.037 23.35 3.33 46.29 1.73
177 178 6.522625 TCTCCACAGCTGAGATATATTAGC 57.477 41.667 23.35 6.02 34.03 3.09
178 179 6.252233 TCTCCACAGCTGAGATATATTAGCT 58.748 40.000 23.35 10.59 46.66 3.32
179 180 7.406104 TCTCCACAGCTGAGATATATTAGCTA 58.594 38.462 23.35 0.92 44.11 3.32
180 181 8.058235 TCTCCACAGCTGAGATATATTAGCTAT 58.942 37.037 23.35 2.65 44.11 2.97
181 182 8.005192 TCCACAGCTGAGATATATTAGCTATG 57.995 38.462 23.35 14.54 44.11 2.23
182 183 7.617329 TCCACAGCTGAGATATATTAGCTATGT 59.383 37.037 23.35 11.02 44.11 2.29
183 184 8.907885 CCACAGCTGAGATATATTAGCTATGTA 58.092 37.037 23.35 0.00 44.11 2.29
186 187 9.824534 CAGCTGAGATATATTAGCTATGTATCG 57.175 37.037 15.40 0.00 44.11 2.92
187 188 9.567776 AGCTGAGATATATTAGCTATGTATCGT 57.432 33.333 14.37 0.00 44.10 3.73
188 189 9.820229 GCTGAGATATATTAGCTATGTATCGTC 57.180 37.037 6.85 4.44 40.41 4.20
196 197 7.891183 ATTAGCTATGTATCGTCAAATCCAC 57.109 36.000 0.00 0.00 0.00 4.02
197 198 4.299155 AGCTATGTATCGTCAAATCCACG 58.701 43.478 0.00 0.00 38.67 4.94
198 199 3.120991 GCTATGTATCGTCAAATCCACGC 60.121 47.826 0.00 0.00 37.18 5.34
199 200 1.647346 TGTATCGTCAAATCCACGCC 58.353 50.000 0.00 0.00 37.18 5.68
200 201 0.935196 GTATCGTCAAATCCACGCCC 59.065 55.000 0.00 0.00 37.18 6.13
201 202 0.828022 TATCGTCAAATCCACGCCCT 59.172 50.000 0.00 0.00 37.18 5.19
202 203 0.035439 ATCGTCAAATCCACGCCCTT 60.035 50.000 0.00 0.00 37.18 3.95
203 204 0.250553 TCGTCAAATCCACGCCCTTT 60.251 50.000 0.00 0.00 37.18 3.11
204 205 1.002201 TCGTCAAATCCACGCCCTTTA 59.998 47.619 0.00 0.00 37.18 1.85
205 206 2.014128 CGTCAAATCCACGCCCTTTAT 58.986 47.619 0.00 0.00 0.00 1.40
206 207 2.422127 CGTCAAATCCACGCCCTTTATT 59.578 45.455 0.00 0.00 0.00 1.40
207 208 3.119637 CGTCAAATCCACGCCCTTTATTT 60.120 43.478 0.00 0.00 0.00 1.40
208 209 4.617298 CGTCAAATCCACGCCCTTTATTTT 60.617 41.667 0.00 0.00 0.00 1.82
209 210 4.862574 GTCAAATCCACGCCCTTTATTTTC 59.137 41.667 0.00 0.00 0.00 2.29
210 211 4.770010 TCAAATCCACGCCCTTTATTTTCT 59.230 37.500 0.00 0.00 0.00 2.52
211 212 5.946972 TCAAATCCACGCCCTTTATTTTCTA 59.053 36.000 0.00 0.00 0.00 2.10
212 213 6.605594 TCAAATCCACGCCCTTTATTTTCTAT 59.394 34.615 0.00 0.00 0.00 1.98
213 214 6.635030 AATCCACGCCCTTTATTTTCTATC 57.365 37.500 0.00 0.00 0.00 2.08
214 215 4.124238 TCCACGCCCTTTATTTTCTATCG 58.876 43.478 0.00 0.00 0.00 2.92
215 216 3.303791 CCACGCCCTTTATTTTCTATCGC 60.304 47.826 0.00 0.00 0.00 4.58
216 217 3.560068 CACGCCCTTTATTTTCTATCGCT 59.440 43.478 0.00 0.00 0.00 4.93
217 218 4.035208 CACGCCCTTTATTTTCTATCGCTT 59.965 41.667 0.00 0.00 0.00 4.68
218 219 4.638865 ACGCCCTTTATTTTCTATCGCTTT 59.361 37.500 0.00 0.00 0.00 3.51
219 220 4.970003 CGCCCTTTATTTTCTATCGCTTTG 59.030 41.667 0.00 0.00 0.00 2.77
220 221 5.220777 CGCCCTTTATTTTCTATCGCTTTGA 60.221 40.000 0.00 0.00 0.00 2.69
221 222 6.513393 CGCCCTTTATTTTCTATCGCTTTGAT 60.513 38.462 0.00 0.00 41.30 2.57
222 223 7.307751 CGCCCTTTATTTTCTATCGCTTTGATA 60.308 37.037 0.00 0.00 38.57 2.15
223 224 8.349983 GCCCTTTATTTTCTATCGCTTTGATAA 58.650 33.333 0.00 0.00 39.06 1.75
230 231 9.736023 ATTTTCTATCGCTTTGATAATTGAACC 57.264 29.630 0.00 0.00 39.06 3.62
231 232 6.525121 TCTATCGCTTTGATAATTGAACCG 57.475 37.500 0.00 0.00 39.06 4.44
232 233 6.277605 TCTATCGCTTTGATAATTGAACCGA 58.722 36.000 0.00 0.00 39.06 4.69
233 234 5.811399 ATCGCTTTGATAATTGAACCGAA 57.189 34.783 0.00 0.00 34.83 4.30
234 235 5.216566 TCGCTTTGATAATTGAACCGAAG 57.783 39.130 0.00 0.00 0.00 3.79
235 236 4.932799 TCGCTTTGATAATTGAACCGAAGA 59.067 37.500 0.00 0.00 0.00 2.87
236 237 5.584649 TCGCTTTGATAATTGAACCGAAGAT 59.415 36.000 0.00 0.00 0.00 2.40
237 238 6.093495 TCGCTTTGATAATTGAACCGAAGATT 59.907 34.615 0.00 0.00 0.00 2.40
238 239 7.279090 TCGCTTTGATAATTGAACCGAAGATTA 59.721 33.333 0.00 0.00 0.00 1.75
239 240 7.584123 CGCTTTGATAATTGAACCGAAGATTAG 59.416 37.037 0.00 0.00 0.00 1.73
240 241 7.377131 GCTTTGATAATTGAACCGAAGATTAGC 59.623 37.037 0.00 0.00 0.00 3.09
241 242 8.506168 TTTGATAATTGAACCGAAGATTAGCT 57.494 30.769 0.00 0.00 0.00 3.32
242 243 8.506168 TTGATAATTGAACCGAAGATTAGCTT 57.494 30.769 0.00 0.00 40.25 3.74
243 244 8.506168 TGATAATTGAACCGAAGATTAGCTTT 57.494 30.769 0.00 0.00 36.83 3.51
244 245 9.607988 TGATAATTGAACCGAAGATTAGCTTTA 57.392 29.630 0.00 0.00 36.83 1.85
247 248 8.506168 AATTGAACCGAAGATTAGCTTTATGA 57.494 30.769 0.00 0.00 36.83 2.15
248 249 8.682936 ATTGAACCGAAGATTAGCTTTATGAT 57.317 30.769 0.00 0.00 36.83 2.45
249 250 7.482654 TGAACCGAAGATTAGCTTTATGATG 57.517 36.000 0.00 0.00 36.83 3.07
250 251 7.272244 TGAACCGAAGATTAGCTTTATGATGA 58.728 34.615 0.00 0.00 36.83 2.92
251 252 7.224753 TGAACCGAAGATTAGCTTTATGATGAC 59.775 37.037 0.00 0.00 36.83 3.06
252 253 6.582636 ACCGAAGATTAGCTTTATGATGACA 58.417 36.000 0.00 0.00 36.83 3.58
253 254 6.703607 ACCGAAGATTAGCTTTATGATGACAG 59.296 38.462 0.00 0.00 36.83 3.51
254 255 6.347240 CCGAAGATTAGCTTTATGATGACAGC 60.347 42.308 0.00 0.00 36.83 4.40
255 256 6.423302 CGAAGATTAGCTTTATGATGACAGCT 59.577 38.462 0.00 0.00 36.83 4.24
256 257 7.493743 AAGATTAGCTTTATGATGACAGCTG 57.506 36.000 13.48 13.48 31.11 4.24
257 258 6.590068 AGATTAGCTTTATGATGACAGCTGT 58.410 36.000 21.88 21.88 34.29 4.40
258 259 6.482641 AGATTAGCTTTATGATGACAGCTGTG 59.517 38.462 27.27 7.43 34.29 3.66
259 260 3.947868 AGCTTTATGATGACAGCTGTGT 58.052 40.909 27.27 13.00 40.71 3.72
260 261 3.688185 AGCTTTATGATGACAGCTGTGTG 59.312 43.478 27.27 0.00 36.88 3.82
261 262 3.730061 GCTTTATGATGACAGCTGTGTGC 60.730 47.826 27.27 10.90 36.88 4.57
262 263 2.766345 TATGATGACAGCTGTGTGCA 57.234 45.000 27.27 16.94 45.94 4.57
263 264 1.450025 ATGATGACAGCTGTGTGCAG 58.550 50.000 27.27 0.00 45.94 4.41
264 265 0.393820 TGATGACAGCTGTGTGCAGA 59.606 50.000 27.27 4.32 45.28 4.26
265 266 1.077123 GATGACAGCTGTGTGCAGAG 58.923 55.000 27.27 0.00 45.28 3.35
266 267 0.395686 ATGACAGCTGTGTGCAGAGT 59.604 50.000 27.27 0.00 45.28 3.24
267 268 0.249615 TGACAGCTGTGTGCAGAGTC 60.250 55.000 27.27 6.78 45.28 3.36
268 269 0.249615 GACAGCTGTGTGCAGAGTCA 60.250 55.000 27.27 0.00 45.28 3.41
269 270 0.531532 ACAGCTGTGTGCAGAGTCAC 60.532 55.000 20.97 0.00 45.28 3.67
270 271 0.249784 CAGCTGTGTGCAGAGTCACT 60.250 55.000 5.25 0.00 45.28 3.41
271 272 0.467384 AGCTGTGTGCAGAGTCACTT 59.533 50.000 6.72 0.00 45.28 3.16
272 273 1.688735 AGCTGTGTGCAGAGTCACTTA 59.311 47.619 6.72 0.00 45.28 2.24
273 274 2.301296 AGCTGTGTGCAGAGTCACTTAT 59.699 45.455 6.72 0.00 45.28 1.73
274 275 2.414481 GCTGTGTGCAGAGTCACTTATG 59.586 50.000 6.72 0.00 45.28 1.90
275 276 3.657634 CTGTGTGCAGAGTCACTTATGT 58.342 45.455 6.72 0.00 45.28 2.29
276 277 3.653344 TGTGTGCAGAGTCACTTATGTC 58.347 45.455 6.72 0.00 37.81 3.06
277 278 3.069443 TGTGTGCAGAGTCACTTATGTCA 59.931 43.478 6.72 0.00 37.81 3.58
278 279 3.677121 GTGTGCAGAGTCACTTATGTCAG 59.323 47.826 0.00 0.00 37.81 3.51
279 280 3.321968 TGTGCAGAGTCACTTATGTCAGT 59.678 43.478 0.00 0.00 37.81 3.41
280 281 3.677121 GTGCAGAGTCACTTATGTCAGTG 59.323 47.826 0.00 0.00 44.96 3.66
281 282 2.670414 GCAGAGTCACTTATGTCAGTGC 59.330 50.000 0.00 0.00 43.51 4.40
282 283 3.616076 GCAGAGTCACTTATGTCAGTGCT 60.616 47.826 0.00 0.00 43.51 4.40
283 284 3.925299 CAGAGTCACTTATGTCAGTGCTG 59.075 47.826 0.00 0.00 43.51 4.41
284 285 3.056250 AGAGTCACTTATGTCAGTGCTGG 60.056 47.826 0.00 0.00 43.51 4.85
285 286 2.899900 AGTCACTTATGTCAGTGCTGGA 59.100 45.455 0.00 0.00 43.51 3.86
286 287 3.517100 AGTCACTTATGTCAGTGCTGGAT 59.483 43.478 0.00 0.00 43.51 3.41
287 288 4.019860 AGTCACTTATGTCAGTGCTGGATT 60.020 41.667 0.00 0.00 43.51 3.01
288 289 4.697352 GTCACTTATGTCAGTGCTGGATTT 59.303 41.667 0.00 0.00 43.51 2.17
289 290 5.182001 GTCACTTATGTCAGTGCTGGATTTT 59.818 40.000 0.00 0.00 43.51 1.82
290 291 6.371548 GTCACTTATGTCAGTGCTGGATTTTA 59.628 38.462 0.00 0.00 43.51 1.52
291 292 7.066284 GTCACTTATGTCAGTGCTGGATTTTAT 59.934 37.037 0.00 0.00 43.51 1.40
292 293 8.264347 TCACTTATGTCAGTGCTGGATTTTATA 58.736 33.333 0.00 0.00 43.51 0.98
293 294 8.892723 CACTTATGTCAGTGCTGGATTTTATAA 58.107 33.333 0.00 0.00 37.96 0.98
294 295 9.632638 ACTTATGTCAGTGCTGGATTTTATAAT 57.367 29.630 0.00 0.00 0.00 1.28
297 298 8.757982 ATGTCAGTGCTGGATTTTATAATTCT 57.242 30.769 0.00 0.00 0.00 2.40
298 299 7.988737 TGTCAGTGCTGGATTTTATAATTCTG 58.011 34.615 0.00 0.00 0.00 3.02
299 300 6.914757 GTCAGTGCTGGATTTTATAATTCTGC 59.085 38.462 8.51 8.51 41.89 4.26
300 301 6.039717 TCAGTGCTGGATTTTATAATTCTGCC 59.960 38.462 11.67 5.53 41.23 4.85
301 302 6.040166 CAGTGCTGGATTTTATAATTCTGCCT 59.960 38.462 11.67 7.15 41.23 4.75
302 303 6.040166 AGTGCTGGATTTTATAATTCTGCCTG 59.960 38.462 11.67 0.00 41.23 4.85
303 304 6.039717 GTGCTGGATTTTATAATTCTGCCTGA 59.960 38.462 11.67 0.00 41.23 3.86
304 305 6.779049 TGCTGGATTTTATAATTCTGCCTGAT 59.221 34.615 11.67 0.00 41.23 2.90
305 306 7.088905 GCTGGATTTTATAATTCTGCCTGATG 58.911 38.462 5.17 0.00 37.92 3.07
306 307 6.985117 TGGATTTTATAATTCTGCCTGATGC 58.015 36.000 0.00 0.00 41.77 3.91
329 330 9.822185 ATGCATCAGACTTTAATTAATTTTCCC 57.178 29.630 5.91 0.00 0.00 3.97
330 331 9.034800 TGCATCAGACTTTAATTAATTTTCCCT 57.965 29.630 5.91 0.00 0.00 4.20
331 332 9.521503 GCATCAGACTTTAATTAATTTTCCCTC 57.478 33.333 5.91 0.00 0.00 4.30
333 334 8.589701 TCAGACTTTAATTAATTTTCCCTCCC 57.410 34.615 5.91 0.00 0.00 4.30
334 335 8.174085 TCAGACTTTAATTAATTTTCCCTCCCA 58.826 33.333 5.91 0.00 0.00 4.37
335 336 8.811994 CAGACTTTAATTAATTTTCCCTCCCAA 58.188 33.333 5.91 0.00 0.00 4.12
336 337 8.812972 AGACTTTAATTAATTTTCCCTCCCAAC 58.187 33.333 5.91 0.00 0.00 3.77
337 338 8.499288 ACTTTAATTAATTTTCCCTCCCAACA 57.501 30.769 5.91 0.00 0.00 3.33
338 339 8.939932 ACTTTAATTAATTTTCCCTCCCAACAA 58.060 29.630 5.91 0.00 0.00 2.83
339 340 9.958180 CTTTAATTAATTTTCCCTCCCAACAAT 57.042 29.630 5.91 0.00 0.00 2.71
345 346 9.952030 TTAATTTTCCCTCCCAACAATTTATTC 57.048 29.630 0.00 0.00 0.00 1.75
346 347 6.367374 TTTTCCCTCCCAACAATTTATTCC 57.633 37.500 0.00 0.00 0.00 3.01
347 348 4.965283 TCCCTCCCAACAATTTATTCCT 57.035 40.909 0.00 0.00 0.00 3.36
348 349 4.867086 TCCCTCCCAACAATTTATTCCTC 58.133 43.478 0.00 0.00 0.00 3.71
349 350 4.544152 TCCCTCCCAACAATTTATTCCTCT 59.456 41.667 0.00 0.00 0.00 3.69
350 351 5.734140 TCCCTCCCAACAATTTATTCCTCTA 59.266 40.000 0.00 0.00 0.00 2.43
351 352 6.392842 TCCCTCCCAACAATTTATTCCTCTAT 59.607 38.462 0.00 0.00 0.00 1.98
352 353 7.069344 CCCTCCCAACAATTTATTCCTCTATT 58.931 38.462 0.00 0.00 0.00 1.73
353 354 7.231519 CCCTCCCAACAATTTATTCCTCTATTC 59.768 40.741 0.00 0.00 0.00 1.75
354 355 8.001292 CCTCCCAACAATTTATTCCTCTATTCT 58.999 37.037 0.00 0.00 0.00 2.40
355 356 8.752005 TCCCAACAATTTATTCCTCTATTCTG 57.248 34.615 0.00 0.00 0.00 3.02
356 357 8.336235 TCCCAACAATTTATTCCTCTATTCTGT 58.664 33.333 0.00 0.00 0.00 3.41
357 358 8.971073 CCCAACAATTTATTCCTCTATTCTGTT 58.029 33.333 0.00 0.00 0.00 3.16
365 366 9.706691 TTTATTCCTCTATTCTGTTATTAGCCG 57.293 33.333 0.00 0.00 0.00 5.52
366 367 6.726490 TTCCTCTATTCTGTTATTAGCCGT 57.274 37.500 0.00 0.00 0.00 5.68
367 368 6.726490 TCCTCTATTCTGTTATTAGCCGTT 57.274 37.500 0.00 0.00 0.00 4.44
368 369 6.513180 TCCTCTATTCTGTTATTAGCCGTTG 58.487 40.000 0.00 0.00 0.00 4.10
369 370 5.177696 CCTCTATTCTGTTATTAGCCGTTGC 59.822 44.000 0.00 0.00 37.95 4.17
370 371 5.054477 TCTATTCTGTTATTAGCCGTTGCC 58.946 41.667 0.00 0.00 38.69 4.52
371 372 2.032680 TCTGTTATTAGCCGTTGCCC 57.967 50.000 0.00 0.00 38.69 5.36
372 373 0.655733 CTGTTATTAGCCGTTGCCCG 59.344 55.000 0.00 0.00 38.69 6.13
373 374 0.036199 TGTTATTAGCCGTTGCCCGT 60.036 50.000 0.00 0.00 38.69 5.28
374 375 1.206610 TGTTATTAGCCGTTGCCCGTA 59.793 47.619 0.00 0.00 38.69 4.02
375 376 1.862827 GTTATTAGCCGTTGCCCGTAG 59.137 52.381 0.00 0.00 38.69 3.51
376 377 0.249573 TATTAGCCGTTGCCCGTAGC 60.250 55.000 0.00 0.00 44.14 3.58
389 390 4.158020 GCCCGTAGCACTAGAGTAATAC 57.842 50.000 0.00 0.00 42.97 1.89
390 391 3.819902 GCCCGTAGCACTAGAGTAATACT 59.180 47.826 0.00 0.00 42.97 2.12
391 392 4.277921 GCCCGTAGCACTAGAGTAATACTT 59.722 45.833 0.00 0.00 42.97 2.24
392 393 5.759963 CCCGTAGCACTAGAGTAATACTTG 58.240 45.833 0.00 0.00 0.00 3.16
393 394 5.530171 CCCGTAGCACTAGAGTAATACTTGA 59.470 44.000 0.00 0.00 0.00 3.02
394 395 6.039047 CCCGTAGCACTAGAGTAATACTTGAA 59.961 42.308 0.00 0.00 0.00 2.69
395 396 6.911511 CCGTAGCACTAGAGTAATACTTGAAC 59.088 42.308 0.00 0.00 0.00 3.18
396 397 7.201714 CCGTAGCACTAGAGTAATACTTGAACT 60.202 40.741 0.00 0.00 0.00 3.01
397 398 7.640630 CGTAGCACTAGAGTAATACTTGAACTG 59.359 40.741 0.00 0.00 0.00 3.16
398 399 7.704578 AGCACTAGAGTAATACTTGAACTGA 57.295 36.000 0.00 0.00 0.00 3.41
399 400 8.299990 AGCACTAGAGTAATACTTGAACTGAT 57.700 34.615 0.00 0.00 0.00 2.90
400 401 8.754080 AGCACTAGAGTAATACTTGAACTGATT 58.246 33.333 0.00 0.00 0.00 2.57
401 402 9.026074 GCACTAGAGTAATACTTGAACTGATTC 57.974 37.037 0.00 0.00 35.18 2.52
406 407 9.950496 AGAGTAATACTTGAACTGATTCATGTT 57.050 29.630 12.15 1.14 45.94 2.71
413 414 7.875971 ACTTGAACTGATTCATGTTACTTTCC 58.124 34.615 3.47 0.00 45.94 3.13
414 415 7.721399 ACTTGAACTGATTCATGTTACTTTCCT 59.279 33.333 3.47 0.00 45.94 3.36
415 416 8.463930 TTGAACTGATTCATGTTACTTTCCTT 57.536 30.769 0.00 0.00 44.36 3.36
416 417 8.463930 TGAACTGATTCATGTTACTTTCCTTT 57.536 30.769 0.00 0.00 40.01 3.11
417 418 8.567948 TGAACTGATTCATGTTACTTTCCTTTC 58.432 33.333 0.00 0.00 40.01 2.62
418 419 7.133891 ACTGATTCATGTTACTTTCCTTTCG 57.866 36.000 0.00 0.00 0.00 3.46
419 420 5.938322 TGATTCATGTTACTTTCCTTTCGC 58.062 37.500 0.00 0.00 0.00 4.70
420 421 5.471797 TGATTCATGTTACTTTCCTTTCGCA 59.528 36.000 0.00 0.00 0.00 5.10
421 422 5.759506 TTCATGTTACTTTCCTTTCGCAA 57.240 34.783 0.00 0.00 0.00 4.85
422 423 5.759506 TCATGTTACTTTCCTTTCGCAAA 57.240 34.783 0.00 0.00 0.00 3.68
423 424 6.137794 TCATGTTACTTTCCTTTCGCAAAA 57.862 33.333 0.00 0.00 0.00 2.44
424 425 6.565234 TCATGTTACTTTCCTTTCGCAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
451 452 9.635520 AGAGAGAAAATATTCATGTTGCTTTTG 57.364 29.630 0.00 0.00 38.06 2.44
452 453 8.248117 AGAGAAAATATTCATGTTGCTTTTGC 57.752 30.769 0.00 0.00 41.11 3.68
453 454 7.874016 AGAGAAAATATTCATGTTGCTTTTGCA 59.126 29.630 0.00 0.00 45.26 4.08
454 455 8.025243 AGAAAATATTCATGTTGCTTTTGCAG 57.975 30.769 0.00 0.00 46.41 4.41
455 456 7.874016 AGAAAATATTCATGTTGCTTTTGCAGA 59.126 29.630 0.00 0.00 46.41 4.26
456 457 8.662141 GAAAATATTCATGTTGCTTTTGCAGAT 58.338 29.630 0.00 0.00 44.83 2.90
469 470 7.880059 GCTTTTGCAGATTTTCATTAGTCTT 57.120 32.000 0.00 0.00 46.58 3.01
470 471 8.970691 GCTTTTGCAGATTTTCATTAGTCTTA 57.029 30.769 0.00 0.00 46.58 2.10
471 472 9.578439 GCTTTTGCAGATTTTCATTAGTCTTAT 57.422 29.630 0.00 0.00 46.58 1.73
491 492 9.817809 GTCTTATATGTTCTGGATACTTTGACA 57.182 33.333 0.00 0.00 37.61 3.58
493 494 9.823647 CTTATATGTTCTGGATACTTTGACAGT 57.176 33.333 0.00 0.00 39.87 3.55
494 495 9.817809 TTATATGTTCTGGATACTTTGACAGTC 57.182 33.333 0.00 0.00 36.88 3.51
495 496 5.808366 TGTTCTGGATACTTTGACAGTCT 57.192 39.130 1.31 0.00 36.88 3.24
496 497 5.541845 TGTTCTGGATACTTTGACAGTCTG 58.458 41.667 1.31 0.00 36.88 3.51
497 498 5.304357 TGTTCTGGATACTTTGACAGTCTGA 59.696 40.000 6.91 0.00 36.88 3.27
498 499 5.392767 TCTGGATACTTTGACAGTCTGAC 57.607 43.478 6.91 0.00 36.88 3.51
499 500 5.080337 TCTGGATACTTTGACAGTCTGACT 58.920 41.667 6.91 4.06 36.88 3.41
500 501 6.246163 TCTGGATACTTTGACAGTCTGACTA 58.754 40.000 10.47 0.00 36.88 2.59
501 502 6.375736 TCTGGATACTTTGACAGTCTGACTAG 59.624 42.308 10.47 6.50 36.88 2.57
502 503 5.105716 TGGATACTTTGACAGTCTGACTAGC 60.106 44.000 10.47 6.10 36.88 3.42
503 504 5.105716 GGATACTTTGACAGTCTGACTAGCA 60.106 44.000 10.47 8.68 36.88 3.49
504 505 3.983741 ACTTTGACAGTCTGACTAGCAC 58.016 45.455 10.47 3.32 0.00 4.40
505 506 2.706555 TTGACAGTCTGACTAGCACG 57.293 50.000 10.47 0.10 0.00 5.34
506 507 0.881796 TGACAGTCTGACTAGCACGG 59.118 55.000 10.47 0.00 0.00 4.94
507 508 0.882474 GACAGTCTGACTAGCACGGT 59.118 55.000 10.47 2.88 0.00 4.83
508 509 1.269998 GACAGTCTGACTAGCACGGTT 59.730 52.381 10.47 0.00 0.00 4.44
509 510 1.269998 ACAGTCTGACTAGCACGGTTC 59.730 52.381 10.47 0.00 0.00 3.62
510 511 1.269723 CAGTCTGACTAGCACGGTTCA 59.730 52.381 10.47 0.00 0.00 3.18
511 512 1.961394 AGTCTGACTAGCACGGTTCAA 59.039 47.619 8.91 0.00 0.00 2.69
512 513 2.563179 AGTCTGACTAGCACGGTTCAAT 59.437 45.455 8.91 0.00 0.00 2.57
513 514 3.006967 AGTCTGACTAGCACGGTTCAATT 59.993 43.478 8.91 0.00 0.00 2.32
514 515 3.746492 GTCTGACTAGCACGGTTCAATTT 59.254 43.478 0.00 0.00 0.00 1.82
515 516 4.927425 GTCTGACTAGCACGGTTCAATTTA 59.073 41.667 0.00 0.00 0.00 1.40
516 517 5.407387 GTCTGACTAGCACGGTTCAATTTAA 59.593 40.000 0.00 0.00 0.00 1.52
517 518 5.637810 TCTGACTAGCACGGTTCAATTTAAG 59.362 40.000 0.00 0.00 0.00 1.85
518 519 5.543714 TGACTAGCACGGTTCAATTTAAGA 58.456 37.500 0.00 0.00 0.00 2.10
519 520 6.170506 TGACTAGCACGGTTCAATTTAAGAT 58.829 36.000 0.00 0.00 0.00 2.40
520 521 6.653320 TGACTAGCACGGTTCAATTTAAGATT 59.347 34.615 0.00 0.00 0.00 2.40
521 522 7.174253 TGACTAGCACGGTTCAATTTAAGATTT 59.826 33.333 0.00 0.00 0.00 2.17
522 523 7.882179 ACTAGCACGGTTCAATTTAAGATTTT 58.118 30.769 0.00 0.00 0.00 1.82
523 524 8.357402 ACTAGCACGGTTCAATTTAAGATTTTT 58.643 29.630 0.00 0.00 0.00 1.94
524 525 7.637709 AGCACGGTTCAATTTAAGATTTTTC 57.362 32.000 0.00 0.00 0.00 2.29
525 526 7.433680 AGCACGGTTCAATTTAAGATTTTTCT 58.566 30.769 0.00 0.00 0.00 2.52
526 527 8.573035 AGCACGGTTCAATTTAAGATTTTTCTA 58.427 29.630 0.00 0.00 0.00 2.10
527 528 9.353999 GCACGGTTCAATTTAAGATTTTTCTAT 57.646 29.630 0.00 0.00 0.00 1.98
539 540 7.707624 AAGATTTTTCTATTGGAGCATGTCA 57.292 32.000 0.00 0.00 0.00 3.58
540 541 7.707624 AGATTTTTCTATTGGAGCATGTCAA 57.292 32.000 0.00 0.00 0.00 3.18
541 542 7.542025 AGATTTTTCTATTGGAGCATGTCAAC 58.458 34.615 0.00 0.00 0.00 3.18
542 543 6.899393 TTTTTCTATTGGAGCATGTCAACT 57.101 33.333 0.00 0.00 0.00 3.16
543 544 5.885230 TTTCTATTGGAGCATGTCAACTG 57.115 39.130 0.00 0.00 0.00 3.16
544 545 3.877559 TCTATTGGAGCATGTCAACTGG 58.122 45.455 0.00 0.00 0.00 4.00
545 546 2.592102 ATTGGAGCATGTCAACTGGT 57.408 45.000 0.00 0.00 0.00 4.00
546 547 2.363306 TTGGAGCATGTCAACTGGTT 57.637 45.000 0.00 0.00 0.00 3.67
547 548 1.608055 TGGAGCATGTCAACTGGTTG 58.392 50.000 7.10 7.10 41.71 3.77
548 549 0.883833 GGAGCATGTCAACTGGTTGG 59.116 55.000 12.65 0.00 40.78 3.77
549 550 0.883833 GAGCATGTCAACTGGTTGGG 59.116 55.000 12.65 3.31 40.78 4.12
550 551 0.185901 AGCATGTCAACTGGTTGGGT 59.814 50.000 12.65 1.06 40.78 4.51
551 552 0.314935 GCATGTCAACTGGTTGGGTG 59.685 55.000 12.65 10.08 40.78 4.61
552 553 0.314935 CATGTCAACTGGTTGGGTGC 59.685 55.000 12.65 3.50 40.78 5.01
553 554 0.185901 ATGTCAACTGGTTGGGTGCT 59.814 50.000 12.65 0.00 40.78 4.40
554 555 0.465460 TGTCAACTGGTTGGGTGCTC 60.465 55.000 12.65 0.00 40.78 4.26
555 556 1.227823 TCAACTGGTTGGGTGCTCG 60.228 57.895 12.65 0.00 40.78 5.03
556 557 1.227823 CAACTGGTTGGGTGCTCGA 60.228 57.895 5.64 0.00 36.95 4.04
557 558 1.227853 AACTGGTTGGGTGCTCGAC 60.228 57.895 0.00 0.00 0.00 4.20
558 559 1.978455 AACTGGTTGGGTGCTCGACA 61.978 55.000 0.00 0.00 0.00 4.35
559 560 1.003355 CTGGTTGGGTGCTCGACAT 60.003 57.895 0.00 0.00 0.00 3.06
560 561 1.300971 CTGGTTGGGTGCTCGACATG 61.301 60.000 0.00 0.00 0.00 3.21
561 562 1.302511 GGTTGGGTGCTCGACATGT 60.303 57.895 0.00 0.00 0.00 3.21
562 563 0.036765 GGTTGGGTGCTCGACATGTA 60.037 55.000 0.00 0.00 0.00 2.29
563 564 1.609580 GGTTGGGTGCTCGACATGTAA 60.610 52.381 0.00 0.00 0.00 2.41
564 565 2.356135 GTTGGGTGCTCGACATGTAAT 58.644 47.619 0.00 0.00 0.00 1.89
565 566 2.309528 TGGGTGCTCGACATGTAATC 57.690 50.000 0.00 0.00 0.00 1.75
566 567 1.552792 TGGGTGCTCGACATGTAATCA 59.447 47.619 0.00 0.00 0.00 2.57
567 568 2.027653 TGGGTGCTCGACATGTAATCAA 60.028 45.455 0.00 0.00 0.00 2.57
568 569 2.351726 GGGTGCTCGACATGTAATCAAC 59.648 50.000 0.00 0.00 0.00 3.18
569 570 2.029244 GGTGCTCGACATGTAATCAACG 59.971 50.000 0.00 0.00 0.00 4.10
570 571 2.666508 GTGCTCGACATGTAATCAACGT 59.333 45.455 0.00 0.00 0.00 3.99
571 572 3.855379 GTGCTCGACATGTAATCAACGTA 59.145 43.478 0.00 0.00 0.00 3.57
572 573 4.503007 GTGCTCGACATGTAATCAACGTAT 59.497 41.667 0.00 0.00 0.00 3.06
573 574 5.684184 GTGCTCGACATGTAATCAACGTATA 59.316 40.000 0.00 0.00 0.00 1.47
574 575 5.912955 TGCTCGACATGTAATCAACGTATAG 59.087 40.000 0.00 0.00 0.00 1.31
575 576 5.164177 GCTCGACATGTAATCAACGTATAGC 60.164 44.000 0.00 0.00 0.00 2.97
576 577 6.068473 TCGACATGTAATCAACGTATAGCT 57.932 37.500 0.00 0.00 0.00 3.32
577 578 6.140786 TCGACATGTAATCAACGTATAGCTC 58.859 40.000 0.00 0.00 0.00 4.09
578 579 6.017357 TCGACATGTAATCAACGTATAGCTCT 60.017 38.462 0.00 0.00 0.00 4.09
579 580 6.086896 CGACATGTAATCAACGTATAGCTCTG 59.913 42.308 0.00 0.00 0.00 3.35
580 581 6.806751 ACATGTAATCAACGTATAGCTCTGT 58.193 36.000 0.00 0.00 0.00 3.41
581 582 7.937649 ACATGTAATCAACGTATAGCTCTGTA 58.062 34.615 0.00 0.00 0.00 2.74
582 583 8.076781 ACATGTAATCAACGTATAGCTCTGTAG 58.923 37.037 0.00 0.00 0.00 2.74
583 584 7.797038 TGTAATCAACGTATAGCTCTGTAGA 57.203 36.000 0.00 0.00 0.00 2.59
584 585 7.862648 TGTAATCAACGTATAGCTCTGTAGAG 58.137 38.462 4.53 4.53 44.75 2.43
597 598 0.485543 TGTAGAGAGGGTCCACCACA 59.514 55.000 0.00 0.00 43.89 4.17
600 601 1.867363 AGAGAGGGTCCACCACATAC 58.133 55.000 0.00 0.00 43.89 2.39
603 604 1.968050 GAGGGTCCACCACATACCGG 61.968 65.000 0.00 0.00 43.89 5.28
659 663 0.611714 TTTCCTCCCAACGCTAGGTC 59.388 55.000 0.00 0.00 0.00 3.85
746 753 0.249322 CACAGACCGGTGTCGTCTTT 60.249 55.000 14.63 0.00 46.51 2.52
786 794 1.183030 TGGCGGAGAAGACGAAGGAA 61.183 55.000 0.00 0.00 0.00 3.36
788 796 1.069255 GCGGAGAAGACGAAGGAAAC 58.931 55.000 0.00 0.00 0.00 2.78
881 890 1.956869 TCCTCCAAATCTCCTGCTGA 58.043 50.000 0.00 0.00 0.00 4.26
912 921 1.078143 GGATCCAACTGCGAGCCTT 60.078 57.895 6.95 0.00 32.88 4.35
1059 1068 1.261619 CCGTTCAACAAGACTGTGCTC 59.738 52.381 0.00 0.00 35.37 4.26
1110 1123 0.034896 ACCACGAAGCAAGATTCCGT 59.965 50.000 0.00 0.00 0.00 4.69
1155 1168 1.053424 TCCACTTTGGTAGCGAAGGT 58.947 50.000 22.72 8.52 39.03 3.50
1227 1240 5.487488 TGTCCTGGTGTTAAAGGAGTATGAT 59.513 40.000 0.00 0.00 43.27 2.45
1254 1267 3.181447 ACGTTAGACCCTCGGAGATGATA 60.181 47.826 6.58 0.00 33.89 2.15
1266 1279 5.601662 TCGGAGATGATATTTGACAAGGTC 58.398 41.667 0.00 0.00 0.00 3.85
1380 1393 0.034186 TGGATGTGGACAAGGATGGC 60.034 55.000 0.00 0.00 0.00 4.40
1392 1405 1.076485 GGATGGCATGGCAAGAGGT 60.076 57.895 27.04 9.27 0.00 3.85
1434 1447 4.460382 GCAAGAATCTCCATCTTTGAACCA 59.540 41.667 0.00 0.00 34.99 3.67
1445 1458 0.838608 TTTGAACCACTGGTACGGGT 59.161 50.000 0.00 0.00 40.47 5.28
1473 1486 1.349026 CTCAAGGCCACTCAGGAAGAA 59.651 52.381 5.01 0.00 41.22 2.52
1476 1489 3.160269 CAAGGCCACTCAGGAAGAAAAT 58.840 45.455 5.01 0.00 41.22 1.82
1487 1500 7.824289 CACTCAGGAAGAAAATAACAGGACATA 59.176 37.037 0.00 0.00 0.00 2.29
1579 1592 0.680921 ATGCAATCCCCCTGTTGACG 60.681 55.000 0.00 0.00 0.00 4.35
1713 1734 5.189934 ACAGTCGGAAGGAAATTCTAAGGAT 59.810 40.000 0.00 0.00 38.07 3.24
1769 1790 2.995258 CCAAGCGCAATTTAAATGCTGT 59.005 40.909 11.47 1.88 41.64 4.40
1779 1800 7.097490 CGCAATTTAAATGCTGTTTTTGACAAC 60.097 33.333 15.72 0.00 41.64 3.32
1792 1813 1.140312 TGACAACCCAGAAAGCTCCT 58.860 50.000 0.00 0.00 0.00 3.69
1802 1823 0.250467 GAAAGCTCCTGCACTGGTGA 60.250 55.000 4.79 0.00 42.74 4.02
1824 1847 1.067295 AGCACAAGATGGACAAGGGA 58.933 50.000 0.00 0.00 0.00 4.20
1830 1853 3.008485 ACAAGATGGACAAGGGAGAAGTC 59.992 47.826 0.00 0.00 0.00 3.01
1863 1886 1.349067 AAGACCGGTTTAGAGGTGCT 58.651 50.000 9.42 0.00 41.51 4.40
1885 1908 1.178534 GCAGGAGGAGAGGGATCTCG 61.179 65.000 0.00 0.00 44.47 4.04
1949 1972 1.271271 ACTCAAGGAGCAGCAAAGGAG 60.271 52.381 0.00 0.00 32.04 3.69
1996 2021 4.107311 AGGAGAGGAGAAGGTATAGGGAAG 59.893 50.000 0.00 0.00 0.00 3.46
2014 2039 4.448347 GGGAAGGGAATGAGGCAAATAGAT 60.448 45.833 0.00 0.00 0.00 1.98
2043 2068 7.413438 GCTCATGAGGATTATGCTTATAAACCG 60.413 40.741 23.89 0.00 35.07 4.44
2055 2080 0.107361 ATAAACCGCACTACCCTGCC 60.107 55.000 0.00 0.00 33.18 4.85
2058 2083 4.028490 CCGCACTACCCTGCCCAA 62.028 66.667 0.00 0.00 33.18 4.12
2065 2090 1.351350 ACTACCCTGCCCAAAGAAGAC 59.649 52.381 0.00 0.00 0.00 3.01
2085 2110 9.144298 AGAAGACGAGGATATTATGTTAGGAAA 57.856 33.333 0.00 0.00 0.00 3.13
2090 2115 7.509659 ACGAGGATATTATGTTAGGAAACCTCT 59.490 37.037 0.00 0.00 38.27 3.69
2091 2116 8.368668 CGAGGATATTATGTTAGGAAACCTCTT 58.631 37.037 0.00 0.00 38.27 2.85
2102 2127 8.877195 TGTTAGGAAACCTCTTACTAATCAAGT 58.123 33.333 0.00 0.00 37.35 3.16
2107 2132 7.707464 GGAAACCTCTTACTAATCAAGTAGAGC 59.293 40.741 0.00 0.00 41.70 4.09
2118 2143 5.690464 ATCAAGTAGAGCATGGAAGAAGT 57.310 39.130 0.00 0.00 0.00 3.01
2139 2164 0.451783 GAAACAGCCCCAATGCTACG 59.548 55.000 0.00 0.00 40.32 3.51
2158 2183 1.524008 GCCCAACACGAGGAAAAGGG 61.524 60.000 0.00 0.00 37.87 3.95
2170 2195 3.507377 AAAAGGGGGCCACGACAGG 62.507 63.158 4.39 0.00 0.00 4.00
2195 2220 1.152525 TAGCTAAGGAGGGCGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
2214 2239 1.416401 GGCAGATATGAGGAAACGGGA 59.584 52.381 0.00 0.00 0.00 5.14
2215 2240 2.548920 GGCAGATATGAGGAAACGGGAG 60.549 54.545 0.00 0.00 0.00 4.30
2336 2367 6.703607 CGAGAACAATGATTATCTTAGCCTGT 59.296 38.462 0.00 0.00 0.00 4.00
2387 2418 3.145551 GGCGAGCTTCGGGACCTA 61.146 66.667 7.50 0.00 40.84 3.08
2390 2421 1.099879 GCGAGCTTCGGGACCTAGTA 61.100 60.000 7.50 0.00 40.84 1.82
2391 2422 0.662085 CGAGCTTCGGGACCTAGTAC 59.338 60.000 0.00 0.00 36.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.751060 CATGTTGAGCACTGGCAAATTAT 58.249 39.130 0.00 0.00 44.61 1.28
1 2 3.614630 GCATGTTGAGCACTGGCAAATTA 60.615 43.478 0.00 0.00 44.61 1.40
2 3 2.868839 GCATGTTGAGCACTGGCAAATT 60.869 45.455 0.00 0.00 44.61 1.82
4 5 0.032403 GCATGTTGAGCACTGGCAAA 59.968 50.000 0.00 0.00 44.61 3.68
6 7 1.108132 TTGCATGTTGAGCACTGGCA 61.108 50.000 0.00 0.00 42.54 4.92
7 8 0.665369 GTTGCATGTTGAGCACTGGC 60.665 55.000 0.00 0.00 42.54 4.85
8 9 0.669619 TGTTGCATGTTGAGCACTGG 59.330 50.000 0.00 0.00 42.54 4.00
9 10 2.495409 TTGTTGCATGTTGAGCACTG 57.505 45.000 0.00 0.00 42.54 3.66
10 11 4.520111 TCTTATTGTTGCATGTTGAGCACT 59.480 37.500 0.00 0.00 42.54 4.40
11 12 4.797471 TCTTATTGTTGCATGTTGAGCAC 58.203 39.130 0.00 0.00 42.54 4.40
12 13 5.009911 AGTTCTTATTGTTGCATGTTGAGCA 59.990 36.000 0.00 0.00 40.85 4.26
13 14 5.464168 AGTTCTTATTGTTGCATGTTGAGC 58.536 37.500 0.00 0.00 0.00 4.26
38 39 9.788889 TGCTTGTGATGATATTCTCTGAATTAT 57.211 29.630 0.00 0.00 0.00 1.28
39 40 9.269453 CTGCTTGTGATGATATTCTCTGAATTA 57.731 33.333 0.00 0.00 0.00 1.40
40 41 7.255173 GCTGCTTGTGATGATATTCTCTGAATT 60.255 37.037 0.00 0.00 0.00 2.17
41 42 6.205076 GCTGCTTGTGATGATATTCTCTGAAT 59.795 38.462 0.00 0.00 0.00 2.57
42 43 5.526479 GCTGCTTGTGATGATATTCTCTGAA 59.474 40.000 0.00 0.00 0.00 3.02
43 44 5.055144 GCTGCTTGTGATGATATTCTCTGA 58.945 41.667 0.00 0.00 0.00 3.27
44 45 4.084485 CGCTGCTTGTGATGATATTCTCTG 60.084 45.833 0.00 0.00 0.00 3.35
45 46 4.056740 CGCTGCTTGTGATGATATTCTCT 58.943 43.478 0.00 0.00 0.00 3.10
46 47 4.053983 TCGCTGCTTGTGATGATATTCTC 58.946 43.478 0.00 0.00 0.00 2.87
47 48 4.063998 TCGCTGCTTGTGATGATATTCT 57.936 40.909 0.00 0.00 0.00 2.40
48 49 4.801147 TTCGCTGCTTGTGATGATATTC 57.199 40.909 0.00 0.00 34.87 1.75
49 50 5.106197 TGTTTTCGCTGCTTGTGATGATATT 60.106 36.000 0.00 0.00 34.87 1.28
50 51 4.395854 TGTTTTCGCTGCTTGTGATGATAT 59.604 37.500 0.00 0.00 34.87 1.63
51 52 3.750652 TGTTTTCGCTGCTTGTGATGATA 59.249 39.130 0.00 0.00 34.87 2.15
52 53 2.553602 TGTTTTCGCTGCTTGTGATGAT 59.446 40.909 0.00 0.00 34.87 2.45
53 54 1.946081 TGTTTTCGCTGCTTGTGATGA 59.054 42.857 0.00 0.00 34.87 2.92
54 55 2.046313 GTGTTTTCGCTGCTTGTGATG 58.954 47.619 0.00 0.00 34.87 3.07
55 56 1.334059 CGTGTTTTCGCTGCTTGTGAT 60.334 47.619 0.00 0.00 34.87 3.06
56 57 0.027455 CGTGTTTTCGCTGCTTGTGA 59.973 50.000 0.00 0.00 0.00 3.58
57 58 2.483793 CGTGTTTTCGCTGCTTGTG 58.516 52.632 0.00 0.00 0.00 3.33
58 59 4.996113 CGTGTTTTCGCTGCTTGT 57.004 50.000 0.00 0.00 0.00 3.16
66 67 0.655733 AGTGGTTGAGCGTGTTTTCG 59.344 50.000 0.00 0.00 0.00 3.46
67 68 1.002792 GGAGTGGTTGAGCGTGTTTTC 60.003 52.381 0.00 0.00 0.00 2.29
68 69 1.021968 GGAGTGGTTGAGCGTGTTTT 58.978 50.000 0.00 0.00 0.00 2.43
69 70 0.180406 AGGAGTGGTTGAGCGTGTTT 59.820 50.000 0.00 0.00 0.00 2.83
70 71 0.249911 GAGGAGTGGTTGAGCGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
71 72 1.367840 GAGGAGTGGTTGAGCGTGT 59.632 57.895 0.00 0.00 0.00 4.49
72 73 0.946221 GTGAGGAGTGGTTGAGCGTG 60.946 60.000 0.00 0.00 0.00 5.34
73 74 1.115930 AGTGAGGAGTGGTTGAGCGT 61.116 55.000 0.00 0.00 0.00 5.07
74 75 0.034059 AAGTGAGGAGTGGTTGAGCG 59.966 55.000 0.00 0.00 0.00 5.03
75 76 1.070758 TCAAGTGAGGAGTGGTTGAGC 59.929 52.381 0.00 0.00 0.00 4.26
76 77 2.760374 GTCAAGTGAGGAGTGGTTGAG 58.240 52.381 0.00 0.00 0.00 3.02
77 78 1.068588 CGTCAAGTGAGGAGTGGTTGA 59.931 52.381 0.00 0.00 32.08 3.18
78 79 1.502231 CGTCAAGTGAGGAGTGGTTG 58.498 55.000 0.00 0.00 32.08 3.77
79 80 0.249911 GCGTCAAGTGAGGAGTGGTT 60.250 55.000 5.22 0.00 32.08 3.67
80 81 1.367840 GCGTCAAGTGAGGAGTGGT 59.632 57.895 5.22 0.00 32.08 4.16
81 82 1.374758 GGCGTCAAGTGAGGAGTGG 60.375 63.158 5.22 0.00 32.08 4.00
82 83 0.034059 AAGGCGTCAAGTGAGGAGTG 59.966 55.000 5.22 0.00 32.08 3.51
83 84 0.034059 CAAGGCGTCAAGTGAGGAGT 59.966 55.000 5.22 0.00 32.08 3.85
84 85 1.294659 GCAAGGCGTCAAGTGAGGAG 61.295 60.000 5.22 0.00 32.08 3.69
85 86 1.301716 GCAAGGCGTCAAGTGAGGA 60.302 57.895 5.22 0.00 32.08 3.71
86 87 0.037326 TAGCAAGGCGTCAAGTGAGG 60.037 55.000 0.00 0.00 0.00 3.86
87 88 2.015736 ATAGCAAGGCGTCAAGTGAG 57.984 50.000 0.00 0.00 0.00 3.51
88 89 3.819564 ATATAGCAAGGCGTCAAGTGA 57.180 42.857 0.00 0.00 0.00 3.41
89 90 5.984233 TTAATATAGCAAGGCGTCAAGTG 57.016 39.130 0.00 0.00 0.00 3.16
90 91 6.765989 TGATTTAATATAGCAAGGCGTCAAGT 59.234 34.615 0.00 0.00 0.00 3.16
91 92 7.072030 GTGATTTAATATAGCAAGGCGTCAAG 58.928 38.462 0.00 0.00 0.00 3.02
92 93 6.540551 TGTGATTTAATATAGCAAGGCGTCAA 59.459 34.615 0.00 0.00 0.00 3.18
93 94 6.052360 TGTGATTTAATATAGCAAGGCGTCA 58.948 36.000 0.00 0.00 0.00 4.35
94 95 6.539649 TGTGATTTAATATAGCAAGGCGTC 57.460 37.500 0.00 0.00 0.00 5.19
95 96 6.513393 GCTTGTGATTTAATATAGCAAGGCGT 60.513 38.462 0.00 0.00 34.28 5.68
96 97 5.853282 GCTTGTGATTTAATATAGCAAGGCG 59.147 40.000 0.00 0.00 34.28 5.52
97 98 6.738114 TGCTTGTGATTTAATATAGCAAGGC 58.262 36.000 0.00 0.00 34.55 4.35
98 99 7.934457 ACTGCTTGTGATTTAATATAGCAAGG 58.066 34.615 0.00 0.00 36.80 3.61
114 115 1.000607 AGCATGCTTTCACTGCTTGTG 60.001 47.619 16.30 4.43 43.44 3.33
115 116 1.268899 GAGCATGCTTTCACTGCTTGT 59.731 47.619 23.61 0.00 45.79 3.16
116 117 1.268625 TGAGCATGCTTTCACTGCTTG 59.731 47.619 23.61 0.00 45.79 4.01
117 118 1.268899 GTGAGCATGCTTTCACTGCTT 59.731 47.619 25.10 0.97 45.79 3.91
119 120 0.109412 GGTGAGCATGCTTTCACTGC 60.109 55.000 28.74 16.10 42.52 4.40
120 121 1.068748 GTGGTGAGCATGCTTTCACTG 60.069 52.381 28.74 0.00 42.52 3.66
121 122 1.242076 GTGGTGAGCATGCTTTCACT 58.758 50.000 28.74 7.25 42.52 3.41
122 123 0.953727 TGTGGTGAGCATGCTTTCAC 59.046 50.000 27.32 27.32 42.25 3.18
123 124 1.610038 CTTGTGGTGAGCATGCTTTCA 59.390 47.619 23.61 13.88 0.00 2.69
124 125 1.068055 CCTTGTGGTGAGCATGCTTTC 60.068 52.381 23.61 17.03 0.00 2.62
125 126 0.963962 CCTTGTGGTGAGCATGCTTT 59.036 50.000 23.61 0.00 0.00 3.51
126 127 1.530013 GCCTTGTGGTGAGCATGCTT 61.530 55.000 23.61 5.39 35.27 3.91
127 128 1.975407 GCCTTGTGGTGAGCATGCT 60.975 57.895 22.92 22.92 35.27 3.79
128 129 1.808531 TTGCCTTGTGGTGAGCATGC 61.809 55.000 10.51 10.51 34.72 4.06
129 130 0.675083 TTTGCCTTGTGGTGAGCATG 59.325 50.000 0.00 0.00 34.72 4.06
130 131 1.547372 GATTTGCCTTGTGGTGAGCAT 59.453 47.619 0.00 0.00 34.72 3.79
131 132 0.961019 GATTTGCCTTGTGGTGAGCA 59.039 50.000 0.00 0.00 35.27 4.26
132 133 0.961019 TGATTTGCCTTGTGGTGAGC 59.039 50.000 0.00 0.00 35.27 4.26
133 134 3.731652 TTTGATTTGCCTTGTGGTGAG 57.268 42.857 0.00 0.00 35.27 3.51
134 135 3.896888 AGATTTGATTTGCCTTGTGGTGA 59.103 39.130 0.00 0.00 35.27 4.02
135 136 4.240096 GAGATTTGATTTGCCTTGTGGTG 58.760 43.478 0.00 0.00 35.27 4.17
136 137 3.259123 GGAGATTTGATTTGCCTTGTGGT 59.741 43.478 0.00 0.00 35.27 4.16
137 138 3.258872 TGGAGATTTGATTTGCCTTGTGG 59.741 43.478 0.00 0.00 0.00 4.17
138 139 4.240096 GTGGAGATTTGATTTGCCTTGTG 58.760 43.478 0.00 0.00 0.00 3.33
139 140 3.896888 TGTGGAGATTTGATTTGCCTTGT 59.103 39.130 0.00 0.00 0.00 3.16
140 141 4.491676 CTGTGGAGATTTGATTTGCCTTG 58.508 43.478 0.00 0.00 0.00 3.61
141 142 3.056322 GCTGTGGAGATTTGATTTGCCTT 60.056 43.478 0.00 0.00 0.00 4.35
142 143 2.494870 GCTGTGGAGATTTGATTTGCCT 59.505 45.455 0.00 0.00 0.00 4.75
143 144 2.494870 AGCTGTGGAGATTTGATTTGCC 59.505 45.455 0.00 0.00 0.00 4.52
144 145 3.192001 TCAGCTGTGGAGATTTGATTTGC 59.808 43.478 14.67 0.00 0.00 3.68
145 146 4.698780 TCTCAGCTGTGGAGATTTGATTTG 59.301 41.667 14.67 0.00 36.52 2.32
146 147 4.914983 TCTCAGCTGTGGAGATTTGATTT 58.085 39.130 14.67 0.00 36.52 2.17
147 148 4.564782 TCTCAGCTGTGGAGATTTGATT 57.435 40.909 14.67 0.00 36.52 2.57
154 155 6.252233 AGCTAATATATCTCAGCTGTGGAGA 58.748 40.000 14.67 9.92 42.60 3.71
155 156 6.528537 AGCTAATATATCTCAGCTGTGGAG 57.471 41.667 14.67 3.87 42.60 3.86
156 157 8.005192 CATAGCTAATATATCTCAGCTGTGGA 57.995 38.462 20.96 13.51 44.66 4.02
160 161 9.824534 CGATACATAGCTAATATATCTCAGCTG 57.175 37.037 19.31 7.63 43.91 4.24
161 162 9.567776 ACGATACATAGCTAATATATCTCAGCT 57.432 33.333 16.32 16.32 45.87 4.24
162 163 9.820229 GACGATACATAGCTAATATATCTCAGC 57.180 37.037 15.09 6.02 0.00 4.26
170 171 9.587772 GTGGATTTGACGATACATAGCTAATAT 57.412 33.333 0.00 0.00 0.00 1.28
171 172 7.753580 CGTGGATTTGACGATACATAGCTAATA 59.246 37.037 0.00 0.00 39.21 0.98
172 173 6.586463 CGTGGATTTGACGATACATAGCTAAT 59.414 38.462 0.00 0.00 39.21 1.73
173 174 5.918576 CGTGGATTTGACGATACATAGCTAA 59.081 40.000 0.00 0.00 39.21 3.09
174 175 5.458015 CGTGGATTTGACGATACATAGCTA 58.542 41.667 0.00 0.00 39.21 3.32
175 176 4.299155 CGTGGATTTGACGATACATAGCT 58.701 43.478 0.00 0.00 39.21 3.32
176 177 3.120991 GCGTGGATTTGACGATACATAGC 60.121 47.826 0.00 0.00 39.21 2.97
177 178 3.428870 GGCGTGGATTTGACGATACATAG 59.571 47.826 0.00 0.00 39.21 2.23
178 179 3.386486 GGCGTGGATTTGACGATACATA 58.614 45.455 0.00 0.00 39.21 2.29
179 180 2.210116 GGCGTGGATTTGACGATACAT 58.790 47.619 0.00 0.00 39.21 2.29
180 181 1.647346 GGCGTGGATTTGACGATACA 58.353 50.000 0.00 0.00 39.21 2.29
181 182 0.935196 GGGCGTGGATTTGACGATAC 59.065 55.000 0.00 0.00 39.21 2.24
182 183 0.828022 AGGGCGTGGATTTGACGATA 59.172 50.000 0.00 0.00 39.21 2.92
183 184 0.035439 AAGGGCGTGGATTTGACGAT 60.035 50.000 0.00 0.00 39.21 3.73
184 185 0.250553 AAAGGGCGTGGATTTGACGA 60.251 50.000 0.00 0.00 39.21 4.20
185 186 1.444836 TAAAGGGCGTGGATTTGACG 58.555 50.000 0.00 0.00 39.87 4.35
186 187 4.450082 AAATAAAGGGCGTGGATTTGAC 57.550 40.909 0.39 0.00 0.00 3.18
187 188 4.770010 AGAAAATAAAGGGCGTGGATTTGA 59.230 37.500 1.70 0.00 0.00 2.69
188 189 5.072040 AGAAAATAAAGGGCGTGGATTTG 57.928 39.130 1.70 0.00 0.00 2.32
189 190 6.238648 CGATAGAAAATAAAGGGCGTGGATTT 60.239 38.462 0.00 0.00 39.76 2.17
190 191 5.238650 CGATAGAAAATAAAGGGCGTGGATT 59.761 40.000 0.00 0.00 39.76 3.01
191 192 4.755123 CGATAGAAAATAAAGGGCGTGGAT 59.245 41.667 0.00 0.00 39.76 3.41
192 193 4.124238 CGATAGAAAATAAAGGGCGTGGA 58.876 43.478 0.00 0.00 39.76 4.02
193 194 3.303791 GCGATAGAAAATAAAGGGCGTGG 60.304 47.826 0.00 0.00 39.76 4.94
194 195 3.560068 AGCGATAGAAAATAAAGGGCGTG 59.440 43.478 0.00 0.00 39.76 5.34
195 196 3.805207 AGCGATAGAAAATAAAGGGCGT 58.195 40.909 0.00 0.00 39.76 5.68
196 197 4.813296 AAGCGATAGAAAATAAAGGGCG 57.187 40.909 0.00 0.00 39.76 6.13
197 198 6.131544 TCAAAGCGATAGAAAATAAAGGGC 57.868 37.500 0.00 0.00 39.76 5.19
204 205 9.736023 GGTTCAATTATCAAAGCGATAGAAAAT 57.264 29.630 0.00 0.00 37.88 1.82
205 206 7.908082 CGGTTCAATTATCAAAGCGATAGAAAA 59.092 33.333 5.56 0.00 44.20 2.29
206 207 7.279090 TCGGTTCAATTATCAAAGCGATAGAAA 59.721 33.333 8.86 0.00 44.82 2.52
207 208 6.759356 TCGGTTCAATTATCAAAGCGATAGAA 59.241 34.615 8.86 0.00 44.82 2.10
208 209 6.277605 TCGGTTCAATTATCAAAGCGATAGA 58.722 36.000 8.86 0.00 44.82 1.98
209 210 6.525121 TCGGTTCAATTATCAAAGCGATAG 57.475 37.500 8.86 0.00 44.82 2.08
213 214 5.216566 TCTTCGGTTCAATTATCAAAGCG 57.783 39.130 0.00 0.00 43.18 4.68
214 215 7.377131 GCTAATCTTCGGTTCAATTATCAAAGC 59.623 37.037 0.00 0.00 0.00 3.51
215 216 8.616076 AGCTAATCTTCGGTTCAATTATCAAAG 58.384 33.333 0.00 0.00 0.00 2.77
216 217 8.506168 AGCTAATCTTCGGTTCAATTATCAAA 57.494 30.769 0.00 0.00 0.00 2.69
217 218 8.506168 AAGCTAATCTTCGGTTCAATTATCAA 57.494 30.769 0.00 0.00 0.00 2.57
218 219 8.506168 AAAGCTAATCTTCGGTTCAATTATCA 57.494 30.769 0.00 0.00 32.88 2.15
221 222 9.607988 TCATAAAGCTAATCTTCGGTTCAATTA 57.392 29.630 0.00 0.00 32.88 1.40
222 223 8.506168 TCATAAAGCTAATCTTCGGTTCAATT 57.494 30.769 0.00 0.00 32.88 2.32
223 224 8.562892 CATCATAAAGCTAATCTTCGGTTCAAT 58.437 33.333 0.00 0.00 32.88 2.57
224 225 7.768582 TCATCATAAAGCTAATCTTCGGTTCAA 59.231 33.333 0.00 0.00 32.88 2.69
225 226 7.224753 GTCATCATAAAGCTAATCTTCGGTTCA 59.775 37.037 0.00 0.00 32.88 3.18
226 227 7.224753 TGTCATCATAAAGCTAATCTTCGGTTC 59.775 37.037 0.00 0.00 32.88 3.62
227 228 7.047891 TGTCATCATAAAGCTAATCTTCGGTT 58.952 34.615 0.00 0.00 32.88 4.44
228 229 6.582636 TGTCATCATAAAGCTAATCTTCGGT 58.417 36.000 0.00 0.00 32.88 4.69
229 230 6.347240 GCTGTCATCATAAAGCTAATCTTCGG 60.347 42.308 0.00 0.00 32.88 4.30
230 231 6.423302 AGCTGTCATCATAAAGCTAATCTTCG 59.577 38.462 0.00 0.00 44.00 3.79
231 232 7.226325 ACAGCTGTCATCATAAAGCTAATCTTC 59.774 37.037 15.25 0.00 44.00 2.87
232 233 7.012138 CACAGCTGTCATCATAAAGCTAATCTT 59.988 37.037 18.64 0.00 44.00 2.40
233 234 6.482641 CACAGCTGTCATCATAAAGCTAATCT 59.517 38.462 18.64 0.00 44.00 2.40
234 235 6.259608 ACACAGCTGTCATCATAAAGCTAATC 59.740 38.462 18.64 0.00 44.00 1.75
235 236 6.037940 CACACAGCTGTCATCATAAAGCTAAT 59.962 38.462 18.64 0.00 44.00 1.73
236 237 5.352293 CACACAGCTGTCATCATAAAGCTAA 59.648 40.000 18.64 0.00 44.00 3.09
237 238 4.872124 CACACAGCTGTCATCATAAAGCTA 59.128 41.667 18.64 0.00 44.00 3.32
238 239 3.688185 CACACAGCTGTCATCATAAAGCT 59.312 43.478 18.64 0.00 46.70 3.74
239 240 3.730061 GCACACAGCTGTCATCATAAAGC 60.730 47.826 18.64 6.77 41.15 3.51
240 241 3.437741 TGCACACAGCTGTCATCATAAAG 59.562 43.478 18.64 4.83 45.94 1.85
241 242 3.410508 TGCACACAGCTGTCATCATAAA 58.589 40.909 18.64 0.00 45.94 1.40
242 243 3.004862 CTGCACACAGCTGTCATCATAA 58.995 45.455 18.64 0.00 45.94 1.90
243 244 2.234414 TCTGCACACAGCTGTCATCATA 59.766 45.455 18.64 4.67 44.10 2.15
244 245 1.002773 TCTGCACACAGCTGTCATCAT 59.997 47.619 18.64 0.00 44.10 2.45
245 246 0.393820 TCTGCACACAGCTGTCATCA 59.606 50.000 18.64 13.25 44.10 3.07
246 247 1.077123 CTCTGCACACAGCTGTCATC 58.923 55.000 18.64 9.05 44.10 2.92
247 248 0.395686 ACTCTGCACACAGCTGTCAT 59.604 50.000 18.64 5.18 44.10 3.06
248 249 0.249615 GACTCTGCACACAGCTGTCA 60.250 55.000 18.64 11.58 44.10 3.58
249 250 0.249615 TGACTCTGCACACAGCTGTC 60.250 55.000 18.64 6.75 44.10 3.51
250 251 0.531532 GTGACTCTGCACACAGCTGT 60.532 55.000 15.25 15.25 44.10 4.40
251 252 0.249784 AGTGACTCTGCACACAGCTG 60.250 55.000 13.48 13.48 44.10 4.24
252 253 0.467384 AAGTGACTCTGCACACAGCT 59.533 50.000 7.79 0.00 44.10 4.24
253 254 2.154854 TAAGTGACTCTGCACACAGC 57.845 50.000 7.79 0.00 44.10 4.40
254 255 3.657634 ACATAAGTGACTCTGCACACAG 58.342 45.455 7.79 0.00 45.95 3.66
255 256 3.069443 TGACATAAGTGACTCTGCACACA 59.931 43.478 7.79 0.00 41.19 3.72
256 257 3.653344 TGACATAAGTGACTCTGCACAC 58.347 45.455 0.00 0.00 41.19 3.82
257 258 3.321968 ACTGACATAAGTGACTCTGCACA 59.678 43.478 0.00 0.00 41.19 4.57
258 259 3.919216 ACTGACATAAGTGACTCTGCAC 58.081 45.455 0.00 0.00 39.05 4.57
268 269 9.632638 ATTATAAAATCCAGCACTGACATAAGT 57.367 29.630 0.00 0.00 0.00 2.24
271 272 9.851686 AGAATTATAAAATCCAGCACTGACATA 57.148 29.630 0.00 0.00 0.00 2.29
272 273 8.627403 CAGAATTATAAAATCCAGCACTGACAT 58.373 33.333 0.00 0.00 0.00 3.06
273 274 7.415541 GCAGAATTATAAAATCCAGCACTGACA 60.416 37.037 0.00 0.00 0.00 3.58
274 275 6.914757 GCAGAATTATAAAATCCAGCACTGAC 59.085 38.462 0.00 0.00 0.00 3.51
275 276 6.039717 GGCAGAATTATAAAATCCAGCACTGA 59.960 38.462 0.00 0.00 0.00 3.41
276 277 6.040166 AGGCAGAATTATAAAATCCAGCACTG 59.960 38.462 13.65 0.00 0.00 3.66
277 278 6.040166 CAGGCAGAATTATAAAATCCAGCACT 59.960 38.462 13.65 8.67 0.00 4.40
278 279 6.039717 TCAGGCAGAATTATAAAATCCAGCAC 59.960 38.462 13.65 7.38 0.00 4.40
279 280 6.128486 TCAGGCAGAATTATAAAATCCAGCA 58.872 36.000 13.65 0.00 0.00 4.41
280 281 6.639632 TCAGGCAGAATTATAAAATCCAGC 57.360 37.500 0.00 0.00 0.00 4.85
281 282 7.088905 GCATCAGGCAGAATTATAAAATCCAG 58.911 38.462 0.00 0.00 43.97 3.86
282 283 6.985117 GCATCAGGCAGAATTATAAAATCCA 58.015 36.000 0.00 0.00 43.97 3.41
303 304 9.822185 GGGAAAATTAATTAAAGTCTGATGCAT 57.178 29.630 0.00 0.00 0.00 3.96
304 305 9.034800 AGGGAAAATTAATTAAAGTCTGATGCA 57.965 29.630 1.21 0.00 0.00 3.96
305 306 9.521503 GAGGGAAAATTAATTAAAGTCTGATGC 57.478 33.333 1.21 0.00 0.00 3.91
307 308 9.201989 GGGAGGGAAAATTAATTAAAGTCTGAT 57.798 33.333 1.21 0.00 0.00 2.90
308 309 8.174085 TGGGAGGGAAAATTAATTAAAGTCTGA 58.826 33.333 1.21 0.00 0.00 3.27
309 310 8.361169 TGGGAGGGAAAATTAATTAAAGTCTG 57.639 34.615 1.21 0.00 0.00 3.51
310 311 8.812972 GTTGGGAGGGAAAATTAATTAAAGTCT 58.187 33.333 1.21 0.00 0.00 3.24
311 312 8.590204 TGTTGGGAGGGAAAATTAATTAAAGTC 58.410 33.333 1.21 0.44 0.00 3.01
312 313 8.499288 TGTTGGGAGGGAAAATTAATTAAAGT 57.501 30.769 1.21 0.00 0.00 2.66
313 314 9.958180 ATTGTTGGGAGGGAAAATTAATTAAAG 57.042 29.630 1.21 0.00 0.00 1.85
319 320 9.952030 GAATAAATTGTTGGGAGGGAAAATTAA 57.048 29.630 0.00 0.00 0.00 1.40
320 321 8.544622 GGAATAAATTGTTGGGAGGGAAAATTA 58.455 33.333 0.00 0.00 0.00 1.40
321 322 7.239563 AGGAATAAATTGTTGGGAGGGAAAATT 59.760 33.333 0.00 0.00 0.00 1.82
322 323 6.735229 AGGAATAAATTGTTGGGAGGGAAAAT 59.265 34.615 0.00 0.00 0.00 1.82
323 324 6.088137 AGGAATAAATTGTTGGGAGGGAAAA 58.912 36.000 0.00 0.00 0.00 2.29
324 325 5.660533 AGGAATAAATTGTTGGGAGGGAAA 58.339 37.500 0.00 0.00 0.00 3.13
325 326 5.016245 AGAGGAATAAATTGTTGGGAGGGAA 59.984 40.000 0.00 0.00 0.00 3.97
326 327 4.544152 AGAGGAATAAATTGTTGGGAGGGA 59.456 41.667 0.00 0.00 0.00 4.20
327 328 4.871822 AGAGGAATAAATTGTTGGGAGGG 58.128 43.478 0.00 0.00 0.00 4.30
328 329 8.001292 AGAATAGAGGAATAAATTGTTGGGAGG 58.999 37.037 0.00 0.00 0.00 4.30
329 330 8.844244 CAGAATAGAGGAATAAATTGTTGGGAG 58.156 37.037 0.00 0.00 0.00 4.30
330 331 8.336235 ACAGAATAGAGGAATAAATTGTTGGGA 58.664 33.333 0.00 0.00 0.00 4.37
331 332 8.525290 ACAGAATAGAGGAATAAATTGTTGGG 57.475 34.615 0.00 0.00 0.00 4.12
339 340 9.706691 CGGCTAATAACAGAATAGAGGAATAAA 57.293 33.333 0.00 0.00 0.00 1.40
340 341 8.867097 ACGGCTAATAACAGAATAGAGGAATAA 58.133 33.333 0.00 0.00 0.00 1.40
341 342 8.418597 ACGGCTAATAACAGAATAGAGGAATA 57.581 34.615 0.00 0.00 0.00 1.75
342 343 7.304497 ACGGCTAATAACAGAATAGAGGAAT 57.696 36.000 0.00 0.00 0.00 3.01
343 344 6.726490 ACGGCTAATAACAGAATAGAGGAA 57.274 37.500 0.00 0.00 0.00 3.36
344 345 6.513180 CAACGGCTAATAACAGAATAGAGGA 58.487 40.000 0.00 0.00 0.00 3.71
345 346 5.177696 GCAACGGCTAATAACAGAATAGAGG 59.822 44.000 0.00 0.00 36.96 3.69
346 347 5.177696 GGCAACGGCTAATAACAGAATAGAG 59.822 44.000 0.00 0.00 40.87 2.43
347 348 5.054477 GGCAACGGCTAATAACAGAATAGA 58.946 41.667 0.00 0.00 40.87 1.98
348 349 4.213482 GGGCAACGGCTAATAACAGAATAG 59.787 45.833 0.00 0.00 40.87 1.73
349 350 4.131596 GGGCAACGGCTAATAACAGAATA 58.868 43.478 0.00 0.00 40.87 1.75
350 351 2.949644 GGGCAACGGCTAATAACAGAAT 59.050 45.455 0.00 0.00 40.87 2.40
351 352 2.361789 GGGCAACGGCTAATAACAGAA 58.638 47.619 0.00 0.00 40.87 3.02
352 353 1.741055 CGGGCAACGGCTAATAACAGA 60.741 52.381 0.00 0.00 40.87 3.41
353 354 0.655733 CGGGCAACGGCTAATAACAG 59.344 55.000 0.00 0.00 40.87 3.16
354 355 2.770134 CGGGCAACGGCTAATAACA 58.230 52.632 0.00 0.00 40.87 2.41
368 369 3.819902 AGTATTACTCTAGTGCTACGGGC 59.180 47.826 0.00 0.00 42.22 6.13
369 370 5.530171 TCAAGTATTACTCTAGTGCTACGGG 59.470 44.000 0.00 0.00 0.00 5.28
370 371 6.615264 TCAAGTATTACTCTAGTGCTACGG 57.385 41.667 0.00 0.00 0.00 4.02
371 372 7.640630 CAGTTCAAGTATTACTCTAGTGCTACG 59.359 40.741 0.00 0.00 0.00 3.51
372 373 8.675504 TCAGTTCAAGTATTACTCTAGTGCTAC 58.324 37.037 0.00 0.00 0.00 3.58
373 374 8.803397 TCAGTTCAAGTATTACTCTAGTGCTA 57.197 34.615 0.00 0.00 0.00 3.49
374 375 7.704578 TCAGTTCAAGTATTACTCTAGTGCT 57.295 36.000 0.00 0.00 0.00 4.40
375 376 8.934507 AATCAGTTCAAGTATTACTCTAGTGC 57.065 34.615 0.00 0.00 0.00 4.40
380 381 9.950496 AACATGAATCAGTTCAAGTATTACTCT 57.050 29.630 0.00 0.00 46.67 3.24
387 388 8.999431 GGAAAGTAACATGAATCAGTTCAAGTA 58.001 33.333 0.00 0.00 46.67 2.24
388 389 7.721399 AGGAAAGTAACATGAATCAGTTCAAGT 59.279 33.333 0.00 0.00 46.67 3.16
389 390 8.103948 AGGAAAGTAACATGAATCAGTTCAAG 57.896 34.615 0.00 0.00 46.67 3.02
390 391 8.463930 AAGGAAAGTAACATGAATCAGTTCAA 57.536 30.769 0.00 0.00 46.67 2.69
392 393 7.746475 CGAAAGGAAAGTAACATGAATCAGTTC 59.254 37.037 0.00 0.00 34.85 3.01
393 394 7.584987 CGAAAGGAAAGTAACATGAATCAGTT 58.415 34.615 0.00 0.00 0.00 3.16
394 395 6.348540 GCGAAAGGAAAGTAACATGAATCAGT 60.349 38.462 0.00 0.00 0.00 3.41
395 396 6.024049 GCGAAAGGAAAGTAACATGAATCAG 58.976 40.000 0.00 0.00 0.00 2.90
396 397 5.471797 TGCGAAAGGAAAGTAACATGAATCA 59.528 36.000 0.00 0.00 0.00 2.57
397 398 5.938322 TGCGAAAGGAAAGTAACATGAATC 58.062 37.500 0.00 0.00 0.00 2.52
398 399 5.957842 TGCGAAAGGAAAGTAACATGAAT 57.042 34.783 0.00 0.00 0.00 2.57
399 400 5.759506 TTGCGAAAGGAAAGTAACATGAA 57.240 34.783 0.00 0.00 38.96 2.57
400 401 5.759506 TTTGCGAAAGGAAAGTAACATGA 57.240 34.783 0.00 0.00 46.69 3.07
425 426 9.635520 CAAAAGCAACATGAATATTTTCTCTCT 57.364 29.630 0.00 0.00 32.78 3.10
426 427 8.378421 GCAAAAGCAACATGAATATTTTCTCTC 58.622 33.333 0.00 0.00 32.78 3.20
427 428 7.874016 TGCAAAAGCAACATGAATATTTTCTCT 59.126 29.630 0.00 0.00 32.78 3.10
428 429 8.020861 TGCAAAAGCAACATGAATATTTTCTC 57.979 30.769 0.00 0.00 32.78 2.87
429 430 7.874016 TCTGCAAAAGCAACATGAATATTTTCT 59.126 29.630 0.00 0.00 32.78 2.52
430 431 8.020861 TCTGCAAAAGCAACATGAATATTTTC 57.979 30.769 0.00 0.00 0.00 2.29
431 432 7.966246 TCTGCAAAAGCAACATGAATATTTT 57.034 28.000 0.00 0.00 0.00 1.82
432 433 8.556213 AATCTGCAAAAGCAACATGAATATTT 57.444 26.923 0.00 0.00 0.00 1.40
433 434 8.556213 AAATCTGCAAAAGCAACATGAATATT 57.444 26.923 0.00 0.00 0.00 1.28
434 435 8.556213 AAAATCTGCAAAAGCAACATGAATAT 57.444 26.923 0.00 0.00 0.00 1.28
435 436 7.656542 TGAAAATCTGCAAAAGCAACATGAATA 59.343 29.630 0.00 0.00 0.00 1.75
436 437 6.483974 TGAAAATCTGCAAAAGCAACATGAAT 59.516 30.769 0.00 0.00 0.00 2.57
437 438 5.816258 TGAAAATCTGCAAAAGCAACATGAA 59.184 32.000 0.00 0.00 0.00 2.57
438 439 5.358090 TGAAAATCTGCAAAAGCAACATGA 58.642 33.333 0.00 0.00 0.00 3.07
439 440 5.660629 TGAAAATCTGCAAAAGCAACATG 57.339 34.783 0.00 0.00 0.00 3.21
440 441 6.870971 AATGAAAATCTGCAAAAGCAACAT 57.129 29.167 0.00 0.00 0.00 2.71
441 442 6.985645 ACTAATGAAAATCTGCAAAAGCAACA 59.014 30.769 0.00 0.00 0.00 3.33
442 443 7.383300 AGACTAATGAAAATCTGCAAAAGCAAC 59.617 33.333 0.00 0.00 0.00 4.17
443 444 7.436118 AGACTAATGAAAATCTGCAAAAGCAA 58.564 30.769 0.00 0.00 0.00 3.91
444 445 6.985117 AGACTAATGAAAATCTGCAAAAGCA 58.015 32.000 0.00 0.00 0.00 3.91
445 446 7.880059 AAGACTAATGAAAATCTGCAAAAGC 57.120 32.000 0.00 0.00 0.00 3.51
465 466 9.817809 TGTCAAAGTATCCAGAACATATAAGAC 57.182 33.333 0.00 0.00 0.00 3.01
467 468 9.823647 ACTGTCAAAGTATCCAGAACATATAAG 57.176 33.333 0.00 0.00 37.36 1.73
468 469 9.817809 GACTGTCAAAGTATCCAGAACATATAA 57.182 33.333 2.24 0.00 40.07 0.98
469 470 9.201989 AGACTGTCAAAGTATCCAGAACATATA 57.798 33.333 10.88 0.00 40.07 0.86
470 471 7.984050 CAGACTGTCAAAGTATCCAGAACATAT 59.016 37.037 10.88 0.00 40.07 1.78
471 472 7.178451 TCAGACTGTCAAAGTATCCAGAACATA 59.822 37.037 10.88 0.00 40.07 2.29
472 473 6.014242 TCAGACTGTCAAAGTATCCAGAACAT 60.014 38.462 10.88 0.00 40.07 2.71
473 474 5.304357 TCAGACTGTCAAAGTATCCAGAACA 59.696 40.000 10.88 0.00 40.07 3.18
474 475 5.635700 GTCAGACTGTCAAAGTATCCAGAAC 59.364 44.000 10.88 0.00 40.07 3.01
475 476 5.540337 AGTCAGACTGTCAAAGTATCCAGAA 59.460 40.000 10.88 0.00 40.07 3.02
476 477 5.080337 AGTCAGACTGTCAAAGTATCCAGA 58.920 41.667 10.88 0.00 40.07 3.86
477 478 5.398603 AGTCAGACTGTCAAAGTATCCAG 57.601 43.478 10.88 0.00 40.07 3.86
478 479 5.105716 GCTAGTCAGACTGTCAAAGTATCCA 60.106 44.000 13.84 0.00 40.07 3.41
479 480 5.105716 TGCTAGTCAGACTGTCAAAGTATCC 60.106 44.000 13.84 1.03 40.07 2.59
480 481 5.802956 GTGCTAGTCAGACTGTCAAAGTATC 59.197 44.000 13.84 1.77 40.07 2.24
481 482 5.620205 CGTGCTAGTCAGACTGTCAAAGTAT 60.620 44.000 13.84 0.00 40.07 2.12
482 483 4.320275 CGTGCTAGTCAGACTGTCAAAGTA 60.320 45.833 13.84 0.00 40.07 2.24
483 484 3.551046 CGTGCTAGTCAGACTGTCAAAGT 60.551 47.826 13.84 3.08 43.85 2.66
484 485 2.983136 CGTGCTAGTCAGACTGTCAAAG 59.017 50.000 13.84 3.13 0.00 2.77
485 486 2.288213 CCGTGCTAGTCAGACTGTCAAA 60.288 50.000 13.84 0.00 0.00 2.69
486 487 1.269723 CCGTGCTAGTCAGACTGTCAA 59.730 52.381 13.84 0.00 0.00 3.18
487 488 0.881796 CCGTGCTAGTCAGACTGTCA 59.118 55.000 13.84 7.81 0.00 3.58
488 489 0.882474 ACCGTGCTAGTCAGACTGTC 59.118 55.000 13.84 0.00 0.00 3.51
489 490 1.269998 GAACCGTGCTAGTCAGACTGT 59.730 52.381 13.84 0.00 0.00 3.55
490 491 1.269723 TGAACCGTGCTAGTCAGACTG 59.730 52.381 13.84 4.63 0.00 3.51
491 492 1.617322 TGAACCGTGCTAGTCAGACT 58.383 50.000 8.50 8.50 0.00 3.24
492 493 2.433868 TTGAACCGTGCTAGTCAGAC 57.566 50.000 0.00 0.00 0.00 3.51
493 494 3.678056 AATTGAACCGTGCTAGTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
494 495 5.637810 TCTTAAATTGAACCGTGCTAGTCAG 59.362 40.000 0.00 0.00 0.00 3.51
495 496 5.543714 TCTTAAATTGAACCGTGCTAGTCA 58.456 37.500 0.00 0.00 0.00 3.41
496 497 6.663944 ATCTTAAATTGAACCGTGCTAGTC 57.336 37.500 0.00 0.00 0.00 2.59
497 498 7.448748 AAATCTTAAATTGAACCGTGCTAGT 57.551 32.000 0.00 0.00 0.00 2.57
498 499 8.742554 AAAAATCTTAAATTGAACCGTGCTAG 57.257 30.769 0.00 0.00 0.00 3.42
499 500 8.573035 AGAAAAATCTTAAATTGAACCGTGCTA 58.427 29.630 0.00 0.00 0.00 3.49
500 501 7.433680 AGAAAAATCTTAAATTGAACCGTGCT 58.566 30.769 0.00 0.00 0.00 4.40
501 502 7.637709 AGAAAAATCTTAAATTGAACCGTGC 57.362 32.000 0.00 0.00 0.00 5.34
513 514 9.241919 TGACATGCTCCAATAGAAAAATCTTAA 57.758 29.630 0.00 0.00 0.00 1.85
514 515 8.806429 TGACATGCTCCAATAGAAAAATCTTA 57.194 30.769 0.00 0.00 0.00 2.10
515 516 7.707624 TGACATGCTCCAATAGAAAAATCTT 57.292 32.000 0.00 0.00 0.00 2.40
516 517 7.395489 AGTTGACATGCTCCAATAGAAAAATCT 59.605 33.333 0.00 0.00 0.00 2.40
517 518 7.487189 CAGTTGACATGCTCCAATAGAAAAATC 59.513 37.037 0.00 0.00 0.00 2.17
518 519 7.318141 CAGTTGACATGCTCCAATAGAAAAAT 58.682 34.615 0.00 0.00 0.00 1.82
519 520 6.294675 CCAGTTGACATGCTCCAATAGAAAAA 60.295 38.462 0.00 0.00 0.00 1.94
520 521 5.183713 CCAGTTGACATGCTCCAATAGAAAA 59.816 40.000 0.00 0.00 0.00 2.29
521 522 4.701651 CCAGTTGACATGCTCCAATAGAAA 59.298 41.667 0.00 0.00 0.00 2.52
522 523 4.263462 ACCAGTTGACATGCTCCAATAGAA 60.263 41.667 0.00 0.00 0.00 2.10
523 524 3.264193 ACCAGTTGACATGCTCCAATAGA 59.736 43.478 0.00 0.00 0.00 1.98
524 525 3.614092 ACCAGTTGACATGCTCCAATAG 58.386 45.455 0.00 0.00 0.00 1.73
525 526 3.719268 ACCAGTTGACATGCTCCAATA 57.281 42.857 0.00 0.00 0.00 1.90
526 527 2.559668 CAACCAGTTGACATGCTCCAAT 59.440 45.455 4.47 0.00 42.93 3.16
527 528 1.955778 CAACCAGTTGACATGCTCCAA 59.044 47.619 4.47 0.00 42.93 3.53
528 529 1.608055 CAACCAGTTGACATGCTCCA 58.392 50.000 4.47 0.00 42.93 3.86
529 530 0.883833 CCAACCAGTTGACATGCTCC 59.116 55.000 12.06 0.00 42.93 4.70
530 531 0.883833 CCCAACCAGTTGACATGCTC 59.116 55.000 12.06 0.00 42.93 4.26
531 532 0.185901 ACCCAACCAGTTGACATGCT 59.814 50.000 12.06 0.00 42.93 3.79
532 533 0.314935 CACCCAACCAGTTGACATGC 59.685 55.000 12.06 0.00 42.93 4.06
533 534 0.314935 GCACCCAACCAGTTGACATG 59.685 55.000 12.06 7.89 42.93 3.21
534 535 0.185901 AGCACCCAACCAGTTGACAT 59.814 50.000 12.06 0.00 42.93 3.06
535 536 0.465460 GAGCACCCAACCAGTTGACA 60.465 55.000 12.06 0.00 42.93 3.58
536 537 1.507141 CGAGCACCCAACCAGTTGAC 61.507 60.000 12.06 0.00 42.93 3.18
537 538 1.227823 CGAGCACCCAACCAGTTGA 60.228 57.895 12.06 0.00 42.93 3.18
538 539 1.227823 TCGAGCACCCAACCAGTTG 60.228 57.895 3.47 3.47 40.13 3.16
539 540 1.227853 GTCGAGCACCCAACCAGTT 60.228 57.895 0.00 0.00 0.00 3.16
540 541 1.768684 ATGTCGAGCACCCAACCAGT 61.769 55.000 0.00 0.00 0.00 4.00
541 542 1.003355 ATGTCGAGCACCCAACCAG 60.003 57.895 0.00 0.00 0.00 4.00
542 543 1.302431 CATGTCGAGCACCCAACCA 60.302 57.895 0.00 0.00 0.00 3.67
543 544 0.036765 TACATGTCGAGCACCCAACC 60.037 55.000 0.00 0.00 0.00 3.77
544 545 1.803334 TTACATGTCGAGCACCCAAC 58.197 50.000 0.00 0.00 0.00 3.77
545 546 2.027653 TGATTACATGTCGAGCACCCAA 60.028 45.455 0.00 0.00 0.00 4.12
546 547 1.552792 TGATTACATGTCGAGCACCCA 59.447 47.619 0.00 0.00 0.00 4.51
547 548 2.309528 TGATTACATGTCGAGCACCC 57.690 50.000 0.00 0.00 0.00 4.61
548 549 2.029244 CGTTGATTACATGTCGAGCACC 59.971 50.000 0.00 0.00 0.00 5.01
549 550 2.666508 ACGTTGATTACATGTCGAGCAC 59.333 45.455 0.00 0.00 0.00 4.40
550 551 2.954316 ACGTTGATTACATGTCGAGCA 58.046 42.857 0.00 0.00 0.00 4.26
551 552 5.164177 GCTATACGTTGATTACATGTCGAGC 60.164 44.000 0.00 0.24 0.00 5.03
552 553 6.143496 AGCTATACGTTGATTACATGTCGAG 58.857 40.000 0.00 0.00 0.00 4.04
553 554 6.017357 AGAGCTATACGTTGATTACATGTCGA 60.017 38.462 0.00 0.00 0.00 4.20
554 555 6.086896 CAGAGCTATACGTTGATTACATGTCG 59.913 42.308 0.00 0.38 0.00 4.35
555 556 6.918569 ACAGAGCTATACGTTGATTACATGTC 59.081 38.462 0.00 0.00 0.00 3.06
556 557 6.806751 ACAGAGCTATACGTTGATTACATGT 58.193 36.000 2.69 2.69 0.00 3.21
557 558 8.290325 TCTACAGAGCTATACGTTGATTACATG 58.710 37.037 0.00 0.00 0.00 3.21
558 559 8.392372 TCTACAGAGCTATACGTTGATTACAT 57.608 34.615 0.00 0.00 0.00 2.29
559 560 7.713942 TCTCTACAGAGCTATACGTTGATTACA 59.286 37.037 0.00 0.00 41.80 2.41
560 561 8.085720 TCTCTACAGAGCTATACGTTGATTAC 57.914 38.462 0.00 0.00 41.80 1.89
561 562 7.388224 CCTCTCTACAGAGCTATACGTTGATTA 59.612 40.741 0.00 0.00 44.61 1.75
562 563 6.205853 CCTCTCTACAGAGCTATACGTTGATT 59.794 42.308 0.00 0.00 44.61 2.57
563 564 5.703592 CCTCTCTACAGAGCTATACGTTGAT 59.296 44.000 0.00 0.00 44.61 2.57
564 565 5.057819 CCTCTCTACAGAGCTATACGTTGA 58.942 45.833 0.00 0.00 44.61 3.18
565 566 4.214545 CCCTCTCTACAGAGCTATACGTTG 59.785 50.000 0.00 0.00 44.61 4.10
566 567 4.141436 ACCCTCTCTACAGAGCTATACGTT 60.141 45.833 0.00 0.00 44.61 3.99
567 568 3.391955 ACCCTCTCTACAGAGCTATACGT 59.608 47.826 1.12 0.00 44.61 3.57
568 569 3.998341 GACCCTCTCTACAGAGCTATACG 59.002 52.174 1.12 0.00 44.61 3.06
569 570 4.202482 TGGACCCTCTCTACAGAGCTATAC 60.202 50.000 1.12 0.00 44.61 1.47
570 571 3.981375 TGGACCCTCTCTACAGAGCTATA 59.019 47.826 1.12 0.00 44.61 1.31
571 572 2.786445 TGGACCCTCTCTACAGAGCTAT 59.214 50.000 1.12 0.00 44.61 2.97
572 573 2.092321 GTGGACCCTCTCTACAGAGCTA 60.092 54.545 1.12 0.00 44.61 3.32
573 574 1.003646 TGGACCCTCTCTACAGAGCT 58.996 55.000 1.12 0.00 44.61 4.09
574 575 1.107945 GTGGACCCTCTCTACAGAGC 58.892 60.000 1.12 0.00 44.61 4.09
575 576 1.006043 TGGTGGACCCTCTCTACAGAG 59.994 57.143 0.00 0.00 45.44 3.35
576 577 1.081481 TGGTGGACCCTCTCTACAGA 58.919 55.000 0.00 0.00 31.90 3.41
577 578 1.187087 GTGGTGGACCCTCTCTACAG 58.813 60.000 0.00 0.00 31.90 2.74
578 579 0.485543 TGTGGTGGACCCTCTCTACA 59.514 55.000 0.00 0.00 31.90 2.74
579 580 1.867363 ATGTGGTGGACCCTCTCTAC 58.133 55.000 0.00 0.00 34.29 2.59
580 581 2.358932 GGTATGTGGTGGACCCTCTCTA 60.359 54.545 0.00 0.00 34.29 2.43
581 582 1.622725 GGTATGTGGTGGACCCTCTCT 60.623 57.143 0.00 0.00 34.29 3.10
582 583 0.831307 GGTATGTGGTGGACCCTCTC 59.169 60.000 0.00 0.00 34.29 3.20
583 584 0.976073 CGGTATGTGGTGGACCCTCT 60.976 60.000 0.00 0.00 34.29 3.69
584 585 1.520666 CGGTATGTGGTGGACCCTC 59.479 63.158 0.00 0.00 34.29 4.30
597 598 2.039509 GCCTCTAGCGAACCGGTAT 58.960 57.895 8.00 0.00 39.07 2.73
632 636 1.378514 TTGGGAGGAAATCGCCTGC 60.379 57.895 0.00 0.00 44.80 4.85
740 747 2.049433 ACCGTGGCGAGAAAGACG 60.049 61.111 0.00 0.00 0.00 4.18
786 794 1.599047 CGGAGTCCCTGCAGATGTT 59.401 57.895 17.39 0.00 0.00 2.71
788 796 2.503061 CCGGAGTCCCTGCAGATG 59.497 66.667 17.39 6.04 0.00 2.90
1110 1123 3.993736 CGAATATGTTATCGCCCATGTCA 59.006 43.478 0.00 0.00 31.71 3.58
1155 1168 0.107066 ACATCGCATGCCTCCAATCA 60.107 50.000 13.15 0.00 0.00 2.57
1227 1240 0.813184 CCGAGGGTCTAACGTTGCTA 59.187 55.000 11.99 0.00 0.00 3.49
1254 1267 3.255642 CCCAAACATCGACCTTGTCAAAT 59.744 43.478 0.00 0.00 32.09 2.32
1266 1279 5.475719 TCTGTAACTCTAACCCAAACATCG 58.524 41.667 0.00 0.00 0.00 3.84
1380 1393 1.098050 GCTGGTTACCTCTTGCCATG 58.902 55.000 2.07 0.00 0.00 3.66
1392 1405 1.488390 CCCTAACCCGTAGCTGGTTA 58.512 55.000 12.29 12.29 44.17 2.85
1434 1447 2.038164 GAGGAAGAAAACCCGTACCAGT 59.962 50.000 0.00 0.00 0.00 4.00
1445 1458 2.174639 TGAGTGGCCTTGAGGAAGAAAA 59.825 45.455 3.32 0.00 37.39 2.29
1473 1486 6.817140 GGAAGTCGAACTATGTCCTGTTATTT 59.183 38.462 0.00 0.00 0.00 1.40
1476 1489 4.768448 TGGAAGTCGAACTATGTCCTGTTA 59.232 41.667 0.00 0.00 0.00 2.41
1487 1500 5.723672 TTTCTCATAGTGGAAGTCGAACT 57.276 39.130 0.00 0.00 0.00 3.01
1563 1576 2.017049 GATTCGTCAACAGGGGGATTG 58.983 52.381 0.00 0.00 0.00 2.67
1569 1582 1.375396 TGCCGATTCGTCAACAGGG 60.375 57.895 5.20 0.00 0.00 4.45
1579 1592 1.103398 CCTCCCCATTGTGCCGATTC 61.103 60.000 0.00 0.00 0.00 2.52
1713 1734 0.400975 CCCTAGCCGAGCTACCTAGA 59.599 60.000 13.51 0.00 40.44 2.43
1769 1790 3.132111 GGAGCTTTCTGGGTTGTCAAAAA 59.868 43.478 0.00 0.00 0.00 1.94
1779 1800 0.959372 CAGTGCAGGAGCTTTCTGGG 60.959 60.000 16.41 0.00 42.74 4.45
1792 1813 2.592574 GTGCTGCTCACCAGTGCA 60.593 61.111 0.00 0.00 43.71 4.57
1802 1823 1.531423 CTTGTCCATCTTGTGCTGCT 58.469 50.000 0.00 0.00 0.00 4.24
1824 1847 3.297134 TTCTTTGGGCTGTTGACTTCT 57.703 42.857 0.00 0.00 0.00 2.85
1830 1853 1.001378 CGGTCTTTCTTTGGGCTGTTG 60.001 52.381 0.00 0.00 0.00 3.33
1863 1886 0.692419 GATCCCTCTCCTCCTGCCAA 60.692 60.000 0.00 0.00 0.00 4.52
1885 1908 1.590238 CTTGCGTTCGATCTCATGTCC 59.410 52.381 0.00 0.00 0.00 4.02
1949 1972 1.743321 CTCTCGCTCCATGTCCCTCC 61.743 65.000 0.00 0.00 0.00 4.30
1974 1999 4.412843 CTTCCCTATACCTTCTCCTCTCC 58.587 52.174 0.00 0.00 0.00 3.71
1996 2021 5.259632 AGCATATCTATTTGCCTCATTCCC 58.740 41.667 2.32 0.00 39.72 3.97
2043 2068 0.251165 TTCTTTGGGCAGGGTAGTGC 60.251 55.000 0.00 0.00 43.19 4.40
2055 2080 9.197694 CTAACATAATATCCTCGTCTTCTTTGG 57.802 37.037 0.00 0.00 0.00 3.28
2058 2083 8.707796 TCCTAACATAATATCCTCGTCTTCTT 57.292 34.615 0.00 0.00 0.00 2.52
2065 2090 7.897864 AGAGGTTTCCTAACATAATATCCTCG 58.102 38.462 0.00 0.00 41.46 4.63
2085 2110 7.201956 CCATGCTCTACTTGATTAGTAAGAGGT 60.202 40.741 0.00 0.00 38.84 3.85
2090 2115 8.306313 TCTTCCATGCTCTACTTGATTAGTAA 57.694 34.615 0.00 0.00 38.84 2.24
2091 2116 7.898014 TCTTCCATGCTCTACTTGATTAGTA 57.102 36.000 0.00 0.00 38.33 1.82
2092 2117 6.798427 TCTTCCATGCTCTACTTGATTAGT 57.202 37.500 0.00 0.00 41.04 2.24
2095 2120 5.879223 CACTTCTTCCATGCTCTACTTGATT 59.121 40.000 0.00 0.00 0.00 2.57
2102 2127 4.041567 TGTTTCCACTTCTTCCATGCTCTA 59.958 41.667 0.00 0.00 0.00 2.43
2103 2128 3.181440 TGTTTCCACTTCTTCCATGCTCT 60.181 43.478 0.00 0.00 0.00 4.09
2107 2132 2.229784 GGCTGTTTCCACTTCTTCCATG 59.770 50.000 0.00 0.00 0.00 3.66
2118 2143 0.407528 TAGCATTGGGGCTGTTTCCA 59.592 50.000 0.00 0.00 45.44 3.53
2139 2164 1.524008 CCCTTTTCCTCGTGTTGGGC 61.524 60.000 0.00 0.00 0.00 5.36
2170 2195 0.831307 CCCTCCTTAGCTACCCACAC 59.169 60.000 0.00 0.00 0.00 3.82
2195 2220 2.103263 ACTCCCGTTTCCTCATATCTGC 59.897 50.000 0.00 0.00 0.00 4.26
2214 2239 6.016192 TCTGTCGAGTATCTCTCACAAAAACT 60.016 38.462 0.00 0.00 42.88 2.66
2215 2240 6.150318 TCTGTCGAGTATCTCTCACAAAAAC 58.850 40.000 0.00 0.00 42.88 2.43
2216 2241 6.327279 TCTGTCGAGTATCTCTCACAAAAA 57.673 37.500 0.00 0.00 42.88 1.94
2274 2305 2.207924 AGGGTCCGCCGATGTATCC 61.208 63.158 0.00 0.00 34.97 2.59
2336 2367 0.912487 ACCCCAATCCTCGGCAGTTA 60.912 55.000 0.00 0.00 0.00 2.24
2387 2418 2.758979 CTCTGGGTTGTATGACCGTACT 59.241 50.000 0.00 0.00 40.75 2.73
2390 2421 0.902531 CCTCTGGGTTGTATGACCGT 59.097 55.000 0.00 0.00 40.75 4.83
2391 2422 0.902531 ACCTCTGGGTTGTATGACCG 59.097 55.000 0.00 0.00 44.73 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.