Multiple sequence alignment - TraesCS4A01G399700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G399700 chr4A 100.000 3379 0 0 1 3379 674349933 674353311 0.000000e+00 6240
1 TraesCS4A01G399700 chr4A 100.000 643 0 0 3552 4194 674353484 674354126 0.000000e+00 1188
2 TraesCS4A01G399700 chr4A 86.966 936 92 16 741 1672 673974997 673975906 0.000000e+00 1026
3 TraesCS4A01G399700 chr4A 90.119 759 53 12 2603 3358 673976743 673977482 0.000000e+00 966
4 TraesCS4A01G399700 chr4A 91.629 657 35 6 3552 4193 673977856 673978507 0.000000e+00 891
5 TraesCS4A01G399700 chr4A 87.065 804 82 11 884 1683 676546321 676547106 0.000000e+00 889
6 TraesCS4A01G399700 chr4A 87.746 661 78 2 2712 3370 676548002 676548661 0.000000e+00 769
7 TraesCS4A01G399700 chr4A 86.128 656 72 13 1881 2529 676547194 676547837 0.000000e+00 689
8 TraesCS4A01G399700 chr4A 85.522 670 82 10 1865 2529 673975955 673976614 0.000000e+00 686
9 TraesCS4A01G399700 chr4A 85.388 657 66 14 3555 4194 676548695 676549338 0.000000e+00 654
10 TraesCS4A01G399700 chr4A 97.778 90 2 0 319 408 310765145 310765234 5.610000e-34 156
11 TraesCS4A01G399700 chr3D 94.312 756 36 5 918 1672 545231681 545230932 0.000000e+00 1151
12 TraesCS4A01G399700 chr3D 88.829 743 54 14 2605 3345 545230084 545229369 0.000000e+00 885
13 TraesCS4A01G399700 chr3D 96.415 530 17 1 3665 4194 545228983 545228456 0.000000e+00 872
14 TraesCS4A01G399700 chr3D 86.186 666 89 3 1865 2529 545230883 545230220 0.000000e+00 717
15 TraesCS4A01G399700 chr3D 95.860 314 13 0 414 727 177339334 177339647 3.740000e-140 508
16 TraesCS4A01G399700 chr3D 95.506 89 4 0 3553 3641 545229062 545228974 4.370000e-30 143
17 TraesCS4A01G399700 chr3D 84.685 111 17 0 1715 1825 5392960 5393070 1.230000e-20 111
18 TraesCS4A01G399700 chr7A 87.259 934 97 11 744 1672 61796642 61795726 0.000000e+00 1046
19 TraesCS4A01G399700 chr7A 95.327 642 26 4 3556 4194 61794159 61793519 0.000000e+00 1016
20 TraesCS4A01G399700 chr7A 93.720 621 34 2 2758 3374 61794779 61794160 0.000000e+00 926
21 TraesCS4A01G399700 chr7A 84.535 666 87 8 1865 2529 61795677 61795027 0.000000e+00 645
22 TraesCS4A01G399700 chr7D 95.807 644 26 1 3552 4194 56988515 56987872 0.000000e+00 1038
23 TraesCS4A01G399700 chr7D 91.281 734 57 4 918 1650 56991164 56990437 0.000000e+00 994
24 TraesCS4A01G399700 chr7D 90.357 757 53 10 2605 3359 56989581 56988843 0.000000e+00 976
25 TraesCS4A01G399700 chr7D 85.307 667 94 4 1865 2529 56990377 56989713 0.000000e+00 686
26 TraesCS4A01G399700 chr7D 97.778 90 2 0 319 408 88619933 88620022 5.610000e-34 156
27 TraesCS4A01G399700 chr3B 96.933 326 10 0 408 733 434397245 434397570 7.930000e-152 547
28 TraesCS4A01G399700 chr3B 96.865 319 10 0 1 319 32025621 32025303 6.170000e-148 534
29 TraesCS4A01G399700 chr3B 95.925 319 12 1 1 319 434396930 434397247 2.240000e-142 516
30 TraesCS4A01G399700 chr3B 95.912 318 13 0 2 319 805527214 805527531 2.240000e-142 516
31 TraesCS4A01G399700 chr3B 98.889 90 1 0 319 408 201558029 201557940 1.210000e-35 161
32 TraesCS4A01G399700 chrUn 96.865 319 10 0 1 319 8272473 8272791 6.170000e-148 534
33 TraesCS4A01G399700 chrUn 96.552 319 11 0 1 319 38158813 38158495 2.870000e-146 529
34 TraesCS4A01G399700 chrUn 96.238 319 12 0 1 319 2725049 2725367 1.340000e-144 523
35 TraesCS4A01G399700 chr1B 96.238 319 12 0 1 319 23629448 23629130 1.340000e-144 523
36 TraesCS4A01G399700 chr2B 96.226 318 12 0 2 319 32957349 32957666 4.810000e-144 521
37 TraesCS4A01G399700 chr2B 95.092 326 16 0 408 733 522827969 522828294 8.040000e-142 514
38 TraesCS4A01G399700 chr7B 95.399 326 15 0 408 733 595886927 595887252 1.730000e-143 520
39 TraesCS4A01G399700 chr7B 95.666 323 14 0 411 733 641687875 641687553 1.730000e-143 520
40 TraesCS4A01G399700 chr4B 95.938 320 13 0 414 733 307605063 307604744 1.730000e-143 520
41 TraesCS4A01G399700 chr6B 95.925 319 13 0 1 319 9781501 9781183 6.220000e-143 518
42 TraesCS4A01G399700 chr5D 95.625 320 14 0 414 733 456834613 456834294 8.040000e-142 514
43 TraesCS4A01G399700 chr6D 95.584 317 14 0 411 727 151947925 151948241 3.740000e-140 508
44 TraesCS4A01G399700 chr6D 96.703 91 2 1 319 408 322235169 322235259 2.610000e-32 150
45 TraesCS4A01G399700 chr6A 94.785 326 17 0 408 733 572861039 572861364 3.740000e-140 508
46 TraesCS4A01G399700 chr5A 98.889 90 1 0 319 408 482026627 482026538 1.210000e-35 161
47 TraesCS4A01G399700 chr2D 98.889 90 1 0 319 408 630273067 630273156 1.210000e-35 161
48 TraesCS4A01G399700 chr2D 96.667 90 3 0 319 408 33936592 33936681 2.610000e-32 150
49 TraesCS4A01G399700 chr1D 97.778 90 2 0 319 408 254419511 254419600 5.610000e-34 156
50 TraesCS4A01G399700 chr4D 96.667 90 3 0 319 408 309895627 309895716 2.610000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G399700 chr4A 674349933 674354126 4193 False 3714.00 6240 100.00000 1 4194 2 chr4A.!!$F3 4193
1 TraesCS4A01G399700 chr4A 673974997 673978507 3510 False 892.25 1026 88.55900 741 4193 4 chr4A.!!$F2 3452
2 TraesCS4A01G399700 chr4A 676546321 676549338 3017 False 750.25 889 86.58175 884 4194 4 chr4A.!!$F4 3310
3 TraesCS4A01G399700 chr3D 545228456 545231681 3225 True 753.60 1151 92.24960 918 4194 5 chr3D.!!$R1 3276
4 TraesCS4A01G399700 chr7A 61793519 61796642 3123 True 908.25 1046 90.21025 744 4194 4 chr7A.!!$R1 3450
5 TraesCS4A01G399700 chr7D 56987872 56991164 3292 True 923.50 1038 90.68800 918 4194 4 chr7D.!!$R1 3276
6 TraesCS4A01G399700 chr3B 434396930 434397570 640 False 531.50 547 96.42900 1 733 2 chr3B.!!$F2 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.042013 GACACGCGTAGAGATCTCGG 60.042 60.0 13.44 11.38 34.09 4.63 F
630 631 0.098200 GATGGTCACGATCACGACGA 59.902 55.0 0.00 2.80 42.66 4.20 F
1012 1019 0.103208 GTCAGCTATGTACTGCGCCT 59.897 55.0 4.18 0.00 35.04 5.52 F
1015 1022 0.105039 AGCTATGTACTGCGCCTTCC 59.895 55.0 4.18 0.00 0.00 3.46 F
1019 1026 0.107654 ATGTACTGCGCCTTCCCTTC 60.108 55.0 4.18 0.00 0.00 3.46 F
2161 2216 0.629596 TGGACCACTAGAGATCCGGT 59.370 55.0 0.00 0.00 33.63 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 2499 0.035317 ATCGTGCAGCTTCCTGTTCA 59.965 50.000 0.00 0.00 41.26 3.18 R
2625 2747 6.179756 GGGCATGTTTATCCCTTTGAATTTT 58.820 36.000 0.00 0.00 37.08 1.82 R
2809 2938 1.615392 AGCAAGGTCACCTGAAAATGC 59.385 47.619 9.17 9.17 32.13 3.56 R
2811 2940 3.152341 CTGAGCAAGGTCACCTGAAAAT 58.848 45.455 0.00 0.00 32.13 1.82 R
2851 2980 4.365899 TGCAGCATCTAAATCTGCTTTG 57.634 40.909 13.54 0.00 46.22 2.77 R
3837 4154 0.383231 GATGCAGTATTGTGGCTGGC 59.617 55.000 0.00 0.00 33.62 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.730550 AGACTCCGTATGAAGCAATTTACA 58.269 37.500 0.00 0.00 0.00 2.41
39 40 4.822107 CGTATGAAGCAATTTACAGACGG 58.178 43.478 0.00 0.00 41.82 4.79
69 70 2.161012 TGTGTCTCATCTACGGACGTTC 59.839 50.000 1.57 0.00 33.21 3.95
71 72 1.012086 TCTCATCTACGGACGTTCGG 58.988 55.000 22.31 3.35 0.00 4.30
75 76 2.275547 ATCTACGGACGTTCGGGTGC 62.276 60.000 22.31 0.00 0.00 5.01
115 116 1.066573 CGGAGCCACATCTCTCAAAGT 60.067 52.381 0.00 0.00 33.70 2.66
164 165 3.223435 TCATCGGGTATGAGAGGAGTTC 58.777 50.000 0.00 0.00 39.77 3.01
190 191 1.209128 CAAGGCATACCGCTTCTACG 58.791 55.000 0.00 0.00 42.76 3.51
299 300 4.393680 TGCTCCAAACGGTAACATATTCAC 59.606 41.667 0.00 0.00 0.00 3.18
319 320 7.815840 TTCACTGTTGAATTTCCAACTGATA 57.184 32.000 17.95 7.41 44.87 2.15
320 321 8.408043 TTCACTGTTGAATTTCCAACTGATAT 57.592 30.769 17.95 0.76 44.87 1.63
321 322 8.044060 TCACTGTTGAATTTCCAACTGATATC 57.956 34.615 17.95 0.00 44.87 1.63
322 323 7.884877 TCACTGTTGAATTTCCAACTGATATCT 59.115 33.333 17.95 0.24 44.87 1.98
323 324 8.517878 CACTGTTGAATTTCCAACTGATATCTT 58.482 33.333 17.95 0.00 44.87 2.40
324 325 9.739276 ACTGTTGAATTTCCAACTGATATCTTA 57.261 29.630 17.95 0.00 44.87 2.10
360 361 4.974103 AAAACTTCACTCGAATCGTCTG 57.026 40.909 1.52 0.00 0.00 3.51
361 362 3.917329 AACTTCACTCGAATCGTCTGA 57.083 42.857 1.52 1.77 0.00 3.27
362 363 4.442375 AACTTCACTCGAATCGTCTGAT 57.558 40.909 1.52 0.00 35.98 2.90
374 375 3.777465 TCGTCTGATTCCTCTTTACCG 57.223 47.619 0.00 0.00 0.00 4.02
375 376 3.349927 TCGTCTGATTCCTCTTTACCGA 58.650 45.455 0.00 0.00 0.00 4.69
376 377 3.760151 TCGTCTGATTCCTCTTTACCGAA 59.240 43.478 0.00 0.00 0.00 4.30
377 378 4.106197 CGTCTGATTCCTCTTTACCGAAG 58.894 47.826 0.00 0.00 36.67 3.79
378 379 4.142447 CGTCTGATTCCTCTTTACCGAAGA 60.142 45.833 0.00 0.00 42.03 2.87
379 380 5.621555 CGTCTGATTCCTCTTTACCGAAGAA 60.622 44.000 0.00 0.00 43.56 2.52
380 381 5.808030 GTCTGATTCCTCTTTACCGAAGAAG 59.192 44.000 0.00 0.00 43.56 2.85
381 382 4.504858 TGATTCCTCTTTACCGAAGAAGC 58.495 43.478 0.00 0.00 43.56 3.86
382 383 4.223032 TGATTCCTCTTTACCGAAGAAGCT 59.777 41.667 0.00 0.00 43.56 3.74
383 384 4.618920 TTCCTCTTTACCGAAGAAGCTT 57.381 40.909 0.00 0.00 43.56 3.74
384 385 3.926616 TCCTCTTTACCGAAGAAGCTTG 58.073 45.455 2.10 0.00 43.56 4.01
385 386 3.323979 TCCTCTTTACCGAAGAAGCTTGT 59.676 43.478 2.10 0.00 43.56 3.16
386 387 3.433615 CCTCTTTACCGAAGAAGCTTGTG 59.566 47.826 2.10 0.00 43.56 3.33
387 388 2.806244 TCTTTACCGAAGAAGCTTGTGC 59.194 45.455 2.10 0.00 41.34 4.57
388 389 3.494398 TCTTTACCGAAGAAGCTTGTGCT 60.494 43.478 2.10 0.00 41.34 4.40
389 390 5.328113 TCTTTACCGAAGAAGCTTGTGCTC 61.328 45.833 2.10 0.00 41.59 4.26
450 451 3.443588 GGTGGTTGGCAAGACACC 58.556 61.111 27.87 27.87 45.56 4.16
451 452 4.579127 GTGGTTGGCAAGACACCT 57.421 55.556 19.03 0.00 0.00 4.00
507 508 3.749373 CGACACCAACGACGACGC 61.749 66.667 7.30 0.00 43.96 5.19
536 537 0.370273 GCAAGGTGATAGCGACAACG 59.630 55.000 0.00 0.00 42.93 4.10
537 538 1.990799 CAAGGTGATAGCGACAACGA 58.009 50.000 0.00 0.00 42.66 3.85
538 539 1.654105 CAAGGTGATAGCGACAACGAC 59.346 52.381 0.00 0.00 42.66 4.34
539 540 0.179171 AGGTGATAGCGACAACGACG 60.179 55.000 0.00 0.00 42.66 5.12
546 547 3.391631 CGACAACGACGCGCAAGA 61.392 61.111 5.73 0.00 42.66 3.02
547 548 2.167918 GACAACGACGCGCAAGAC 59.832 61.111 5.73 0.00 43.02 3.01
548 549 2.582265 GACAACGACGCGCAAGACA 61.582 57.895 5.73 0.00 43.02 3.41
549 550 2.128128 CAACGACGCGCAAGACAC 60.128 61.111 5.73 0.00 43.02 3.67
550 551 3.688330 AACGACGCGCAAGACACG 61.688 61.111 5.73 5.79 43.02 4.49
558 559 4.861883 GCAAGACACGCGTAGAGA 57.138 55.556 13.44 0.00 0.00 3.10
559 560 3.330766 GCAAGACACGCGTAGAGAT 57.669 52.632 13.44 0.00 0.00 2.75
560 561 1.192793 GCAAGACACGCGTAGAGATC 58.807 55.000 13.44 4.93 0.00 2.75
561 562 1.202200 GCAAGACACGCGTAGAGATCT 60.202 52.381 13.44 7.39 0.00 2.75
562 563 2.710760 CAAGACACGCGTAGAGATCTC 58.289 52.381 13.44 15.29 0.00 2.75
563 564 0.931702 AGACACGCGTAGAGATCTCG 59.068 55.000 13.44 8.09 34.09 4.04
564 565 0.042013 GACACGCGTAGAGATCTCGG 60.042 60.000 13.44 11.38 34.09 4.63
565 566 1.369448 CACGCGTAGAGATCTCGGC 60.369 63.158 13.44 18.74 34.09 5.54
566 567 1.818363 ACGCGTAGAGATCTCGGCA 60.818 57.895 25.50 12.04 34.09 5.69
567 568 1.355563 CGCGTAGAGATCTCGGCAA 59.644 57.895 25.50 10.30 34.09 4.52
568 569 0.930742 CGCGTAGAGATCTCGGCAAC 60.931 60.000 25.50 17.82 34.09 4.17
581 582 1.129809 GGCAACGACATCGACAACG 59.870 57.895 8.54 0.00 43.02 4.10
591 592 3.299585 CGACAACGAGGCGCATAG 58.700 61.111 10.83 4.76 45.03 2.23
592 593 1.516386 CGACAACGAGGCGCATAGT 60.516 57.895 10.83 5.64 45.03 2.12
593 594 1.742900 CGACAACGAGGCGCATAGTG 61.743 60.000 8.93 5.95 45.03 2.74
594 595 0.457853 GACAACGAGGCGCATAGTGA 60.458 55.000 8.93 0.00 0.00 3.41
595 596 0.175760 ACAACGAGGCGCATAGTGAT 59.824 50.000 8.93 0.00 0.00 3.06
596 597 0.578683 CAACGAGGCGCATAGTGATG 59.421 55.000 8.93 0.19 36.02 3.07
597 598 0.459899 AACGAGGCGCATAGTGATGA 59.540 50.000 8.93 0.00 34.73 2.92
598 599 0.676184 ACGAGGCGCATAGTGATGAT 59.324 50.000 10.83 0.00 34.73 2.45
599 600 1.066136 CGAGGCGCATAGTGATGATG 58.934 55.000 10.83 0.00 34.73 3.07
600 601 1.336240 CGAGGCGCATAGTGATGATGA 60.336 52.381 10.83 0.00 34.73 2.92
601 602 2.064762 GAGGCGCATAGTGATGATGAC 58.935 52.381 10.83 0.00 34.73 3.06
602 603 1.413812 AGGCGCATAGTGATGATGACA 59.586 47.619 10.83 0.00 34.73 3.58
603 604 2.158914 AGGCGCATAGTGATGATGACAA 60.159 45.455 10.83 0.00 34.73 3.18
604 605 2.810274 GGCGCATAGTGATGATGACAAT 59.190 45.455 10.83 0.00 34.73 2.71
605 606 3.120408 GGCGCATAGTGATGATGACAATC 60.120 47.826 10.83 0.00 34.73 2.67
606 607 3.495753 GCGCATAGTGATGATGACAATCA 59.504 43.478 0.30 0.00 46.71 2.57
607 608 4.024641 GCGCATAGTGATGATGACAATCAA 60.025 41.667 0.30 0.00 45.81 2.57
608 609 5.676953 CGCATAGTGATGATGACAATCAAG 58.323 41.667 0.00 0.00 45.81 3.02
609 610 5.464389 CGCATAGTGATGATGACAATCAAGA 59.536 40.000 0.00 0.00 45.81 3.02
610 611 6.147328 CGCATAGTGATGATGACAATCAAGAT 59.853 38.462 0.00 0.00 45.81 2.40
611 612 7.298854 GCATAGTGATGATGACAATCAAGATG 58.701 38.462 7.52 7.52 45.81 2.90
612 613 7.172703 GCATAGTGATGATGACAATCAAGATGA 59.827 37.037 12.51 0.00 45.81 2.92
613 614 9.220767 CATAGTGATGATGACAATCAAGATGAT 57.779 33.333 6.64 0.00 45.81 2.45
614 615 7.497925 AGTGATGATGACAATCAAGATGATG 57.502 36.000 0.00 0.00 45.81 3.07
615 616 6.486993 AGTGATGATGACAATCAAGATGATGG 59.513 38.462 0.00 0.00 45.81 3.51
616 617 6.262496 GTGATGATGACAATCAAGATGATGGT 59.738 38.462 0.01 0.01 43.42 3.55
621 622 4.206477 ACAATCAAGATGATGGTCACGA 57.794 40.909 0.00 0.00 36.30 4.35
622 623 4.774124 ACAATCAAGATGATGGTCACGAT 58.226 39.130 0.00 0.00 36.30 3.73
623 624 4.813161 ACAATCAAGATGATGGTCACGATC 59.187 41.667 0.00 0.00 36.30 3.69
624 625 4.677673 ATCAAGATGATGGTCACGATCA 57.322 40.909 4.80 4.80 35.43 2.92
625 626 3.785486 TCAAGATGATGGTCACGATCAC 58.215 45.455 4.38 0.06 32.68 3.06
626 627 2.498807 AGATGATGGTCACGATCACG 57.501 50.000 4.38 0.00 45.75 4.35
627 628 2.024414 AGATGATGGTCACGATCACGA 58.976 47.619 4.38 0.00 42.66 4.35
628 629 2.120232 GATGATGGTCACGATCACGAC 58.880 52.381 4.38 3.42 42.66 4.34
629 630 0.179174 TGATGGTCACGATCACGACG 60.179 55.000 0.00 0.00 42.66 5.12
630 631 0.098200 GATGGTCACGATCACGACGA 59.902 55.000 0.00 2.80 42.66 4.20
631 632 0.179171 ATGGTCACGATCACGACGAC 60.179 55.000 0.00 0.00 42.66 4.34
632 633 1.232621 TGGTCACGATCACGACGACT 61.233 55.000 0.00 0.00 41.34 4.18
633 634 0.723414 GGTCACGATCACGACGACTA 59.277 55.000 0.00 0.00 41.34 2.59
634 635 1.528603 GGTCACGATCACGACGACTAC 60.529 57.143 0.00 0.00 41.34 2.73
635 636 0.367887 TCACGATCACGACGACTACG 59.632 55.000 0.00 4.85 42.66 3.51
636 637 1.059994 ACGATCACGACGACTACGC 59.940 57.895 0.00 0.00 42.06 4.42
637 638 1.650536 CGATCACGACGACTACGCC 60.651 63.158 0.00 0.00 43.96 5.68
643 644 2.276306 GACGACTACGCCGACGAC 60.276 66.667 0.00 0.00 43.93 4.34
644 645 4.139420 ACGACTACGCCGACGACG 62.139 66.667 0.85 0.85 43.93 5.12
655 656 3.849953 GACGACGCGGATGCCAAC 61.850 66.667 12.47 0.00 38.08 3.77
658 659 2.890474 GACGCGGATGCCAACGAT 60.890 61.111 12.47 0.00 38.08 3.73
659 660 2.871427 GACGCGGATGCCAACGATC 61.871 63.158 12.47 0.00 38.08 3.69
660 661 3.640000 CGCGGATGCCAACGATCC 61.640 66.667 0.00 0.00 38.08 3.36
669 670 2.900528 CCAACGATCCGGCATCTAC 58.099 57.895 0.00 0.00 0.00 2.59
670 671 0.600255 CCAACGATCCGGCATCTACC 60.600 60.000 0.00 0.00 0.00 3.18
671 672 0.104120 CAACGATCCGGCATCTACCA 59.896 55.000 0.00 0.00 0.00 3.25
672 673 0.104304 AACGATCCGGCATCTACCAC 59.896 55.000 0.00 0.00 0.00 4.16
673 674 1.371758 CGATCCGGCATCTACCACG 60.372 63.158 0.00 0.00 0.00 4.94
674 675 1.664965 GATCCGGCATCTACCACGC 60.665 63.158 0.00 0.00 0.00 5.34
675 676 3.165160 ATCCGGCATCTACCACGCC 62.165 63.158 0.00 0.00 42.64 5.68
676 677 4.910585 CCGGCATCTACCACGCCC 62.911 72.222 0.00 0.00 43.17 6.13
678 679 3.845259 GGCATCTACCACGCCCGA 61.845 66.667 0.00 0.00 40.07 5.14
679 680 2.279517 GCATCTACCACGCCCGAG 60.280 66.667 0.00 0.00 0.00 4.63
680 681 2.782222 GCATCTACCACGCCCGAGA 61.782 63.158 0.00 0.00 0.00 4.04
681 682 1.065928 CATCTACCACGCCCGAGAC 59.934 63.158 0.00 0.00 0.00 3.36
682 683 1.076923 ATCTACCACGCCCGAGACT 60.077 57.895 0.00 0.00 0.00 3.24
683 684 1.102222 ATCTACCACGCCCGAGACTC 61.102 60.000 0.00 0.00 0.00 3.36
684 685 2.034532 TACCACGCCCGAGACTCA 59.965 61.111 2.82 0.00 0.00 3.41
685 686 1.592400 CTACCACGCCCGAGACTCAA 61.592 60.000 2.82 0.00 0.00 3.02
686 687 1.870055 TACCACGCCCGAGACTCAAC 61.870 60.000 2.82 0.00 0.00 3.18
687 688 2.805353 CACGCCCGAGACTCAACG 60.805 66.667 2.82 5.33 0.00 4.10
689 690 4.052229 CGCCCGAGACTCAACGGT 62.052 66.667 2.82 0.00 46.53 4.83
690 691 2.126031 GCCCGAGACTCAACGGTC 60.126 66.667 2.82 0.00 46.53 4.79
692 693 1.965219 CCCGAGACTCAACGGTCTT 59.035 57.895 2.82 0.00 45.32 3.01
693 694 0.109226 CCCGAGACTCAACGGTCTTC 60.109 60.000 2.82 0.00 45.32 2.87
694 695 0.109226 CCGAGACTCAACGGTCTTCC 60.109 60.000 2.82 0.00 45.32 3.46
695 696 0.882474 CGAGACTCAACGGTCTTCCT 59.118 55.000 2.82 0.00 45.32 3.36
696 697 1.135632 CGAGACTCAACGGTCTTCCTC 60.136 57.143 2.82 0.00 45.32 3.71
697 698 1.887198 GAGACTCAACGGTCTTCCTCA 59.113 52.381 0.00 0.00 45.32 3.86
698 699 2.296471 GAGACTCAACGGTCTTCCTCAA 59.704 50.000 0.00 0.00 45.32 3.02
699 700 2.297597 AGACTCAACGGTCTTCCTCAAG 59.702 50.000 0.00 0.00 43.14 3.02
700 701 2.036089 GACTCAACGGTCTTCCTCAAGT 59.964 50.000 0.00 0.00 33.81 3.16
701 702 2.224066 ACTCAACGGTCTTCCTCAAGTG 60.224 50.000 0.00 0.00 0.00 3.16
702 703 0.868406 CAACGGTCTTCCTCAAGTGC 59.132 55.000 0.00 0.00 0.00 4.40
703 704 0.468226 AACGGTCTTCCTCAAGTGCA 59.532 50.000 0.00 0.00 0.00 4.57
704 705 0.687354 ACGGTCTTCCTCAAGTGCAT 59.313 50.000 0.00 0.00 0.00 3.96
705 706 1.338200 ACGGTCTTCCTCAAGTGCATC 60.338 52.381 0.00 0.00 0.00 3.91
706 707 1.363744 GGTCTTCCTCAAGTGCATCG 58.636 55.000 0.00 0.00 0.00 3.84
707 708 1.066858 GGTCTTCCTCAAGTGCATCGA 60.067 52.381 0.00 0.00 0.00 3.59
708 709 1.996191 GTCTTCCTCAAGTGCATCGAC 59.004 52.381 0.00 0.00 0.00 4.20
709 710 0.994995 CTTCCTCAAGTGCATCGACG 59.005 55.000 0.00 0.00 0.00 5.12
710 711 1.014044 TTCCTCAAGTGCATCGACGC 61.014 55.000 0.00 0.00 0.00 5.19
711 712 2.456119 CCTCAAGTGCATCGACGCC 61.456 63.158 0.00 0.00 0.00 5.68
712 713 2.792290 CTCAAGTGCATCGACGCCG 61.792 63.158 0.00 0.00 37.07 6.46
721 722 4.347096 TCGACGCCGACACAATTT 57.653 50.000 0.00 0.00 40.30 1.82
722 723 1.856688 TCGACGCCGACACAATTTG 59.143 52.632 0.00 0.00 40.30 2.32
723 724 0.876777 TCGACGCCGACACAATTTGT 60.877 50.000 0.00 0.00 43.10 2.83
724 725 3.038936 TCGACGCCGACACAATTTGTG 62.039 52.381 24.40 24.40 43.37 3.33
733 734 1.407936 CACAATTTGTGTCACCCCCA 58.592 50.000 19.25 0.00 43.08 4.96
734 735 1.759445 CACAATTTGTGTCACCCCCAA 59.241 47.619 19.25 0.00 43.08 4.12
735 736 2.038659 ACAATTTGTGTCACCCCCAAG 58.961 47.619 0.15 0.00 34.38 3.61
736 737 2.038659 CAATTTGTGTCACCCCCAAGT 58.961 47.619 0.00 0.00 0.00 3.16
737 738 3.226777 CAATTTGTGTCACCCCCAAGTA 58.773 45.455 0.00 0.00 0.00 2.24
738 739 3.825908 ATTTGTGTCACCCCCAAGTAT 57.174 42.857 0.00 0.00 0.00 2.12
739 740 2.577606 TTGTGTCACCCCCAAGTATG 57.422 50.000 0.00 0.00 0.00 2.39
742 743 0.988832 TGTCACCCCCAAGTATGGTC 59.011 55.000 0.00 0.00 46.01 4.02
750 751 3.496160 CCCCCAAGTATGGTCGGAAATAG 60.496 52.174 0.00 0.00 46.01 1.73
755 756 5.296035 CCAAGTATGGTCGGAAATAGGAAAC 59.704 44.000 0.00 0.00 42.18 2.78
763 764 5.183228 GTCGGAAATAGGAAACATCTTCCA 58.817 41.667 6.31 0.00 41.00 3.53
768 769 7.702348 CGGAAATAGGAAACATCTTCCAAAATC 59.298 37.037 6.31 0.15 41.00 2.17
775 776 4.541973 ACATCTTCCAAAATCTTTGGGC 57.458 40.909 16.20 0.00 39.96 5.36
777 778 4.533311 ACATCTTCCAAAATCTTTGGGCAT 59.467 37.500 16.20 5.36 39.96 4.40
780 781 5.939447 TCTTCCAAAATCTTTGGGCATTTT 58.061 33.333 16.20 0.00 39.96 1.82
784 785 7.013823 TCCAAAATCTTTGGGCATTTTCATA 57.986 32.000 16.20 0.00 39.96 2.15
785 786 7.456725 TCCAAAATCTTTGGGCATTTTCATAA 58.543 30.769 16.20 0.00 39.96 1.90
794 795 6.224665 TGGGCATTTTCATAATCAAGGAAG 57.775 37.500 0.00 0.00 0.00 3.46
796 797 5.052481 GGCATTTTCATAATCAAGGAAGCC 58.948 41.667 0.00 0.00 0.00 4.35
797 798 5.395546 GGCATTTTCATAATCAAGGAAGCCA 60.396 40.000 0.00 0.00 32.63 4.75
798 799 5.521372 GCATTTTCATAATCAAGGAAGCCAC 59.479 40.000 0.00 0.00 0.00 5.01
803 804 7.572523 TTCATAATCAAGGAAGCCACATAAG 57.427 36.000 0.00 0.00 0.00 1.73
813 814 6.485171 AGGAAGCCACATAAGTTACATTTCT 58.515 36.000 0.00 0.00 0.00 2.52
820 821 7.370383 CCACATAAGTTACATTTCTGCTGTTT 58.630 34.615 0.00 0.00 0.00 2.83
822 823 9.891828 CACATAAGTTACATTTCTGCTGTTTAA 57.108 29.630 0.00 0.00 0.00 1.52
847 848 9.450807 AAAAAGAGAGTTAAATTTGTGTCGATG 57.549 29.630 0.00 0.00 0.00 3.84
848 849 7.962964 AAGAGAGTTAAATTTGTGTCGATGA 57.037 32.000 0.00 0.00 0.00 2.92
849 850 7.962964 AGAGAGTTAAATTTGTGTCGATGAA 57.037 32.000 0.00 0.00 0.00 2.57
850 851 8.553459 AGAGAGTTAAATTTGTGTCGATGAAT 57.447 30.769 0.00 0.00 0.00 2.57
851 852 9.653287 AGAGAGTTAAATTTGTGTCGATGAATA 57.347 29.630 0.00 0.00 0.00 1.75
866 867 2.288666 TGAATATCGCTTGGGAAGTGC 58.711 47.619 0.00 0.00 38.86 4.40
867 868 2.288666 GAATATCGCTTGGGAAGTGCA 58.711 47.619 0.00 0.00 38.86 4.57
873 874 1.335324 CGCTTGGGAAGTGCAAAGAAG 60.335 52.381 0.00 0.00 31.51 2.85
881 882 3.487207 GGAAGTGCAAAGAAGCGAAAAAG 59.513 43.478 0.00 0.00 37.31 2.27
890 891 5.560966 AAGAAGCGAAAAAGAACAAGTCA 57.439 34.783 0.00 0.00 0.00 3.41
914 919 3.948473 AGTCATACTCAGAGCGTGTATGT 59.052 43.478 0.00 3.10 45.79 2.29
927 932 3.334691 CGTGTATGTCACAACCCTGAAT 58.665 45.455 0.00 0.00 46.44 2.57
1009 1016 2.159379 TGACTGTCAGCTATGTACTGCG 60.159 50.000 6.36 0.00 35.04 5.18
1010 1017 1.203928 CTGTCAGCTATGTACTGCGC 58.796 55.000 0.00 0.00 35.04 6.09
1012 1019 0.103208 GTCAGCTATGTACTGCGCCT 59.897 55.000 4.18 0.00 35.04 5.52
1013 1020 0.824109 TCAGCTATGTACTGCGCCTT 59.176 50.000 4.18 0.00 35.04 4.35
1014 1021 1.202417 TCAGCTATGTACTGCGCCTTC 60.202 52.381 4.18 0.00 35.04 3.46
1015 1022 0.105039 AGCTATGTACTGCGCCTTCC 59.895 55.000 4.18 0.00 0.00 3.46
1016 1023 0.880718 GCTATGTACTGCGCCTTCCC 60.881 60.000 4.18 0.00 0.00 3.97
1017 1024 0.753262 CTATGTACTGCGCCTTCCCT 59.247 55.000 4.18 0.00 0.00 4.20
1018 1025 1.139058 CTATGTACTGCGCCTTCCCTT 59.861 52.381 4.18 0.00 0.00 3.95
1019 1026 0.107654 ATGTACTGCGCCTTCCCTTC 60.108 55.000 4.18 0.00 0.00 3.46
1020 1027 1.192146 TGTACTGCGCCTTCCCTTCT 61.192 55.000 4.18 0.00 0.00 2.85
1022 1029 1.112113 TACTGCGCCTTCCCTTCTAG 58.888 55.000 4.18 0.00 0.00 2.43
1027 1034 2.224670 TGCGCCTTCCCTTCTAGAAAAA 60.225 45.455 4.18 1.09 0.00 1.94
1029 1036 2.747989 CGCCTTCCCTTCTAGAAAAACC 59.252 50.000 6.63 0.00 0.00 3.27
1058 1065 6.013379 CCTTATCTTCCCTTGCACCAGATATA 60.013 42.308 0.00 0.00 0.00 0.86
1094 1103 3.696045 CCATGGGTCATCAAACCAAGTA 58.304 45.455 2.85 0.00 41.40 2.24
1172 1181 1.228894 TGGACAGAGCTTCCGAGGT 60.229 57.895 0.00 0.00 35.70 3.85
1197 1206 1.666189 GCAGTAAGGATTTCTGACCGC 59.334 52.381 0.93 0.00 45.03 5.68
1265 1275 3.496337 GCTCATCACATCCATGATCTGGT 60.496 47.826 9.98 0.00 46.08 4.00
1332 1342 1.422531 AGGAGAGATGCAGGATGGAC 58.577 55.000 0.00 0.00 41.42 4.02
1336 1346 1.485480 AGAGATGCAGGATGGACAGTG 59.515 52.381 0.00 0.00 41.42 3.66
1381 1391 3.710209 ACCAGGATATTAGGAGCATGC 57.290 47.619 10.51 10.51 0.00 4.06
1476 1486 5.184711 AGAAGAAGTTCAATCCTGCAGATC 58.815 41.667 17.39 0.00 34.82 2.75
1595 1605 4.637534 TGCAGCATCTAATGGAAGAGAAAC 59.362 41.667 0.00 0.00 0.00 2.78
1636 1646 8.982723 ACAGTCTGGTAAGTATTTCTACATCAT 58.017 33.333 4.53 0.00 0.00 2.45
1672 1682 7.227512 GCTGCCATAGTTCTGTTGTTTAGATAT 59.772 37.037 0.00 0.00 0.00 1.63
1673 1683 9.764363 CTGCCATAGTTCTGTTGTTTAGATATA 57.236 33.333 0.00 0.00 0.00 0.86
1710 1759 9.410556 ACAATATGAAGTTGTTATTTGTCAAGC 57.589 29.630 0.00 0.00 36.44 4.01
1715 1764 9.979578 ATGAAGTTGTTATTTGTCAAGCAATTA 57.020 25.926 0.00 0.00 36.89 1.40
1716 1765 9.462174 TGAAGTTGTTATTTGTCAAGCAATTAG 57.538 29.630 0.00 0.00 36.89 1.73
1717 1766 9.677567 GAAGTTGTTATTTGTCAAGCAATTAGA 57.322 29.630 0.00 0.00 36.89 2.10
1718 1767 9.683069 AAGTTGTTATTTGTCAAGCAATTAGAG 57.317 29.630 0.00 0.00 36.89 2.43
1719 1768 9.066892 AGTTGTTATTTGTCAAGCAATTAGAGA 57.933 29.630 0.00 0.00 36.89 3.10
1721 1770 9.844790 TTGTTATTTGTCAAGCAATTAGAGATG 57.155 29.630 0.00 0.00 36.89 2.90
1722 1771 7.970061 TGTTATTTGTCAAGCAATTAGAGATGC 59.030 33.333 0.00 0.00 42.87 3.91
1723 1772 5.963176 TTTGTCAAGCAATTAGAGATGCA 57.037 34.783 0.00 0.00 44.95 3.96
1724 1773 5.963176 TTGTCAAGCAATTAGAGATGCAA 57.037 34.783 0.00 0.00 44.95 4.08
1725 1774 5.963176 TGTCAAGCAATTAGAGATGCAAA 57.037 34.783 0.00 0.00 44.95 3.68
1726 1775 6.519679 TGTCAAGCAATTAGAGATGCAAAT 57.480 33.333 0.00 0.00 44.95 2.32
1727 1776 6.927416 TGTCAAGCAATTAGAGATGCAAATT 58.073 32.000 0.00 0.00 44.95 1.82
1728 1777 6.809689 TGTCAAGCAATTAGAGATGCAAATTG 59.190 34.615 13.92 13.92 44.95 2.32
1729 1778 7.031372 GTCAAGCAATTAGAGATGCAAATTGA 58.969 34.615 19.96 2.46 44.95 2.57
1730 1779 7.543172 GTCAAGCAATTAGAGATGCAAATTGAA 59.457 33.333 19.96 1.37 44.95 2.69
1731 1780 7.758076 TCAAGCAATTAGAGATGCAAATTGAAG 59.242 33.333 19.96 10.94 44.95 3.02
1732 1781 6.570692 AGCAATTAGAGATGCAAATTGAAGG 58.429 36.000 19.96 0.05 44.95 3.46
1733 1782 5.751990 GCAATTAGAGATGCAAATTGAAGGG 59.248 40.000 19.96 0.00 41.14 3.95
1734 1783 6.628844 GCAATTAGAGATGCAAATTGAAGGGT 60.629 38.462 19.96 0.00 41.14 4.34
1735 1784 7.325694 CAATTAGAGATGCAAATTGAAGGGTT 58.674 34.615 13.24 0.00 41.14 4.11
1736 1785 6.916360 TTAGAGATGCAAATTGAAGGGTTT 57.084 33.333 0.00 0.00 0.00 3.27
1737 1786 5.813513 AGAGATGCAAATTGAAGGGTTTT 57.186 34.783 0.00 0.00 0.00 2.43
1738 1787 6.916360 AGAGATGCAAATTGAAGGGTTTTA 57.084 33.333 0.00 0.00 0.00 1.52
1739 1788 6.928520 AGAGATGCAAATTGAAGGGTTTTAG 58.071 36.000 0.00 0.00 0.00 1.85
1740 1789 6.041423 AGATGCAAATTGAAGGGTTTTAGG 57.959 37.500 0.00 0.00 0.00 2.69
1741 1790 4.615588 TGCAAATTGAAGGGTTTTAGGG 57.384 40.909 0.00 0.00 0.00 3.53
1742 1791 3.970640 TGCAAATTGAAGGGTTTTAGGGT 59.029 39.130 0.00 0.00 0.00 4.34
1743 1792 5.148502 TGCAAATTGAAGGGTTTTAGGGTA 58.851 37.500 0.00 0.00 0.00 3.69
1744 1793 5.782845 TGCAAATTGAAGGGTTTTAGGGTAT 59.217 36.000 0.00 0.00 0.00 2.73
1745 1794 6.071051 TGCAAATTGAAGGGTTTTAGGGTATC 60.071 38.462 0.00 0.00 0.00 2.24
1746 1795 6.629515 GCAAATTGAAGGGTTTTAGGGTATCC 60.630 42.308 0.00 0.00 0.00 2.59
1747 1796 6.417503 AATTGAAGGGTTTTAGGGTATCCT 57.582 37.500 0.00 0.00 46.96 3.24
1748 1797 5.446260 TTGAAGGGTTTTAGGGTATCCTC 57.554 43.478 0.00 0.00 43.66 3.71
1749 1798 4.706616 TGAAGGGTTTTAGGGTATCCTCT 58.293 43.478 0.00 0.00 43.66 3.69
1750 1799 4.473559 TGAAGGGTTTTAGGGTATCCTCTG 59.526 45.833 0.00 0.00 43.66 3.35
1751 1800 4.363546 AGGGTTTTAGGGTATCCTCTGA 57.636 45.455 0.00 0.00 43.66 3.27
1752 1801 4.038633 AGGGTTTTAGGGTATCCTCTGAC 58.961 47.826 0.00 0.00 43.66 3.51
1753 1802 3.136077 GGGTTTTAGGGTATCCTCTGACC 59.864 52.174 0.00 4.90 43.66 4.02
1754 1803 4.038633 GGTTTTAGGGTATCCTCTGACCT 58.961 47.826 0.00 0.00 43.66 3.85
1755 1804 4.473922 GGTTTTAGGGTATCCTCTGACCTT 59.526 45.833 0.00 0.00 43.66 3.50
1756 1805 5.664457 GGTTTTAGGGTATCCTCTGACCTTA 59.336 44.000 0.00 0.00 43.66 2.69
1757 1806 6.183360 GGTTTTAGGGTATCCTCTGACCTTAG 60.183 46.154 0.00 0.00 43.66 2.18
1758 1807 2.965562 AGGGTATCCTCTGACCTTAGC 58.034 52.381 0.00 0.00 39.80 3.09
1759 1808 2.520549 AGGGTATCCTCTGACCTTAGCT 59.479 50.000 0.00 0.00 39.80 3.32
1760 1809 3.727923 AGGGTATCCTCTGACCTTAGCTA 59.272 47.826 0.00 0.00 39.80 3.32
1761 1810 4.083565 GGGTATCCTCTGACCTTAGCTAG 58.916 52.174 0.00 0.00 35.91 3.42
1762 1811 4.448054 GGGTATCCTCTGACCTTAGCTAGT 60.448 50.000 0.00 0.00 35.91 2.57
1763 1812 5.141910 GGTATCCTCTGACCTTAGCTAGTT 58.858 45.833 0.00 0.00 32.58 2.24
1764 1813 5.242171 GGTATCCTCTGACCTTAGCTAGTTC 59.758 48.000 0.00 0.00 32.58 3.01
1765 1814 4.317530 TCCTCTGACCTTAGCTAGTTCA 57.682 45.455 0.00 0.00 0.00 3.18
1766 1815 4.673968 TCCTCTGACCTTAGCTAGTTCAA 58.326 43.478 0.00 0.00 0.00 2.69
1767 1816 5.084519 TCCTCTGACCTTAGCTAGTTCAAA 58.915 41.667 0.00 0.00 0.00 2.69
1768 1817 5.721960 TCCTCTGACCTTAGCTAGTTCAAAT 59.278 40.000 0.00 0.00 0.00 2.32
1769 1818 6.895756 TCCTCTGACCTTAGCTAGTTCAAATA 59.104 38.462 0.00 0.00 0.00 1.40
1770 1819 7.399191 TCCTCTGACCTTAGCTAGTTCAAATAA 59.601 37.037 0.00 0.00 0.00 1.40
1771 1820 8.041323 CCTCTGACCTTAGCTAGTTCAAATAAA 58.959 37.037 0.00 0.00 0.00 1.40
1772 1821 9.606631 CTCTGACCTTAGCTAGTTCAAATAAAT 57.393 33.333 0.00 0.00 0.00 1.40
1773 1822 9.383519 TCTGACCTTAGCTAGTTCAAATAAATG 57.616 33.333 0.00 0.00 0.00 2.32
1774 1823 7.985476 TGACCTTAGCTAGTTCAAATAAATGC 58.015 34.615 0.00 0.00 0.00 3.56
1775 1824 7.609918 TGACCTTAGCTAGTTCAAATAAATGCA 59.390 33.333 0.00 0.00 0.00 3.96
1776 1825 7.762382 ACCTTAGCTAGTTCAAATAAATGCAC 58.238 34.615 0.00 0.00 0.00 4.57
1777 1826 7.611855 ACCTTAGCTAGTTCAAATAAATGCACT 59.388 33.333 0.00 0.00 31.69 4.40
1778 1827 9.109393 CCTTAGCTAGTTCAAATAAATGCACTA 57.891 33.333 0.00 0.00 29.59 2.74
1781 1830 8.335532 AGCTAGTTCAAATAAATGCACTAACA 57.664 30.769 0.00 0.00 30.51 2.41
1782 1831 8.792633 AGCTAGTTCAAATAAATGCACTAACAA 58.207 29.630 0.00 0.00 30.51 2.83
1783 1832 9.573133 GCTAGTTCAAATAAATGCACTAACAAT 57.427 29.630 0.00 0.00 30.51 2.71
1812 1861 6.709018 AAAAGAGGTCTTTCGGAATTTTCA 57.291 33.333 5.45 0.00 44.69 2.69
1813 1862 5.948992 AAGAGGTCTTTCGGAATTTTCAG 57.051 39.130 0.00 0.00 30.82 3.02
1814 1863 4.974399 AGAGGTCTTTCGGAATTTTCAGT 58.026 39.130 0.00 0.00 0.00 3.41
1815 1864 5.377478 AGAGGTCTTTCGGAATTTTCAGTT 58.623 37.500 0.00 0.00 0.00 3.16
1816 1865 5.470437 AGAGGTCTTTCGGAATTTTCAGTTC 59.530 40.000 0.00 0.00 0.00 3.01
1817 1866 5.130350 AGGTCTTTCGGAATTTTCAGTTCA 58.870 37.500 0.00 0.00 0.00 3.18
1818 1867 5.770162 AGGTCTTTCGGAATTTTCAGTTCAT 59.230 36.000 0.00 0.00 0.00 2.57
1819 1868 6.265422 AGGTCTTTCGGAATTTTCAGTTCATT 59.735 34.615 0.00 0.00 0.00 2.57
1820 1869 6.923508 GGTCTTTCGGAATTTTCAGTTCATTT 59.076 34.615 0.00 0.00 0.00 2.32
1821 1870 7.096065 GGTCTTTCGGAATTTTCAGTTCATTTG 60.096 37.037 0.00 0.00 0.00 2.32
1822 1871 7.647715 GTCTTTCGGAATTTTCAGTTCATTTGA 59.352 33.333 0.00 0.00 0.00 2.69
1823 1872 8.359642 TCTTTCGGAATTTTCAGTTCATTTGAT 58.640 29.630 0.00 0.00 0.00 2.57
1824 1873 8.885494 TTTCGGAATTTTCAGTTCATTTGATT 57.115 26.923 0.00 0.00 0.00 2.57
1825 1874 7.872163 TCGGAATTTTCAGTTCATTTGATTG 57.128 32.000 0.00 0.00 0.00 2.67
1826 1875 7.656412 TCGGAATTTTCAGTTCATTTGATTGA 58.344 30.769 0.00 0.00 0.00 2.57
1827 1876 8.140628 TCGGAATTTTCAGTTCATTTGATTGAA 58.859 29.630 4.73 4.73 33.32 2.69
1839 1888 8.561738 TTCATTTGATTGAACTAGTTAGGGTC 57.438 34.615 8.42 5.58 30.82 4.46
1840 1889 7.685481 TCATTTGATTGAACTAGTTAGGGTCA 58.315 34.615 8.42 8.05 0.00 4.02
1841 1890 7.824289 TCATTTGATTGAACTAGTTAGGGTCAG 59.176 37.037 8.42 0.90 0.00 3.51
1842 1891 6.928348 TTGATTGAACTAGTTAGGGTCAGA 57.072 37.500 8.42 0.93 0.00 3.27
1843 1892 6.531503 TGATTGAACTAGTTAGGGTCAGAG 57.468 41.667 8.42 0.00 0.00 3.35
1844 1893 5.422331 TGATTGAACTAGTTAGGGTCAGAGG 59.578 44.000 8.42 0.00 0.00 3.69
1845 1894 3.709587 TGAACTAGTTAGGGTCAGAGGG 58.290 50.000 8.42 0.00 0.00 4.30
1846 1895 3.077088 TGAACTAGTTAGGGTCAGAGGGT 59.923 47.826 8.42 0.00 0.00 4.34
1847 1896 4.293102 TGAACTAGTTAGGGTCAGAGGGTA 59.707 45.833 8.42 0.00 0.00 3.69
1848 1897 4.248174 ACTAGTTAGGGTCAGAGGGTAC 57.752 50.000 0.00 0.00 0.00 3.34
1862 1911 2.900547 GGTACCCATTTGCATGCCT 58.099 52.632 16.68 0.00 0.00 4.75
1863 1912 2.065899 GGTACCCATTTGCATGCCTA 57.934 50.000 16.68 2.87 0.00 3.93
1864 1913 1.956477 GGTACCCATTTGCATGCCTAG 59.044 52.381 16.68 2.26 0.00 3.02
1865 1914 2.422803 GGTACCCATTTGCATGCCTAGA 60.423 50.000 16.68 0.00 0.00 2.43
1866 1915 2.530460 ACCCATTTGCATGCCTAGAA 57.470 45.000 16.68 5.31 0.00 2.10
1867 1916 2.381911 ACCCATTTGCATGCCTAGAAG 58.618 47.619 16.68 2.65 0.00 2.85
1868 1917 1.068127 CCCATTTGCATGCCTAGAAGC 59.932 52.381 16.68 0.00 0.00 3.86
1879 1928 2.424601 TGCCTAGAAGCAATTGTCATGC 59.575 45.455 7.40 3.08 40.56 4.06
1890 1939 7.812690 AGCAATTGTCATGCAATCTCTATTA 57.187 32.000 7.40 0.00 46.29 0.98
1921 1970 4.439305 TCATGCAATGCAACTAGAAACC 57.561 40.909 13.45 0.00 46.21 3.27
1924 1973 4.439305 TGCAATGCAACTAGAAACCATC 57.561 40.909 5.01 0.00 34.76 3.51
1925 1974 4.081406 TGCAATGCAACTAGAAACCATCT 58.919 39.130 5.01 0.00 37.66 2.90
1926 1975 4.082625 TGCAATGCAACTAGAAACCATCTG 60.083 41.667 5.01 0.00 35.56 2.90
1927 1976 4.418392 CAATGCAACTAGAAACCATCTGC 58.582 43.478 0.00 0.00 39.30 4.26
1931 1980 3.065925 GCAACTAGAAACCATCTGCCATC 59.934 47.826 0.00 0.00 39.30 3.51
1939 1988 6.662755 AGAAACCATCTGCCATCTTATGTTA 58.337 36.000 0.00 0.00 36.88 2.41
1942 1991 7.902920 AACCATCTGCCATCTTATGTTAATT 57.097 32.000 0.00 0.00 0.00 1.40
1944 1993 9.592196 AACCATCTGCCATCTTATGTTAATTAT 57.408 29.630 0.00 0.00 0.00 1.28
1971 2020 8.755696 TGTTAACTAAAATCATTGTCCATTGC 57.244 30.769 7.22 0.00 0.00 3.56
1979 2028 7.571080 AAATCATTGTCCATTGCAAAACTTT 57.429 28.000 1.71 0.00 0.00 2.66
1982 2031 6.347696 TCATTGTCCATTGCAAAACTTTTCT 58.652 32.000 1.71 0.00 0.00 2.52
1991 2040 8.938906 CCATTGCAAAACTTTTCTGCTAATAAT 58.061 29.630 1.71 0.00 37.00 1.28
1997 2046 9.780413 CAAAACTTTTCTGCTAATAATCTCCTC 57.220 33.333 0.00 0.00 0.00 3.71
2004 2053 7.914427 TCTGCTAATAATCTCCTCCAAGTTA 57.086 36.000 0.00 0.00 0.00 2.24
2030 2079 4.042809 TCCTTTCAGGCTTCAATAGTTGGA 59.957 41.667 0.00 0.00 34.61 3.53
2066 2115 4.986783 ACCTGCATCATGAGATCAATGAT 58.013 39.130 14.85 14.85 35.61 2.45
2096 2145 2.682352 GGTCTTAGACGAGTCCAGGTAC 59.318 54.545 6.27 0.00 32.65 3.34
2101 2150 3.430042 AGACGAGTCCAGGTACACTAA 57.570 47.619 0.00 0.00 0.00 2.24
2102 2151 3.345414 AGACGAGTCCAGGTACACTAAG 58.655 50.000 0.00 0.00 0.00 2.18
2103 2152 3.080319 GACGAGTCCAGGTACACTAAGT 58.920 50.000 0.00 0.00 0.00 2.24
2104 2153 3.080319 ACGAGTCCAGGTACACTAAGTC 58.920 50.000 0.00 0.00 0.00 3.01
2126 2175 4.337274 TCGTCATCGACCAAAGATAGCTAA 59.663 41.667 0.00 0.00 41.35 3.09
2128 2177 5.505819 CGTCATCGACCAAAGATAGCTAAGA 60.506 44.000 0.00 0.00 39.71 2.10
2129 2178 6.451393 GTCATCGACCAAAGATAGCTAAGAT 58.549 40.000 0.00 0.00 0.00 2.40
2130 2179 7.573283 CGTCATCGACCAAAGATAGCTAAGATA 60.573 40.741 0.00 0.00 39.71 1.98
2152 2207 9.401058 AGATAAATTCTTTTGATGGACCACTAG 57.599 33.333 0.00 0.00 0.00 2.57
2155 2210 6.627087 ATTCTTTTGATGGACCACTAGAGA 57.373 37.500 0.00 0.00 0.00 3.10
2156 2211 6.627087 TTCTTTTGATGGACCACTAGAGAT 57.373 37.500 0.00 0.00 0.00 2.75
2159 2214 2.587522 TGATGGACCACTAGAGATCCG 58.412 52.381 0.00 0.00 33.63 4.18
2160 2215 1.889829 GATGGACCACTAGAGATCCGG 59.110 57.143 0.00 0.00 33.63 5.14
2161 2216 0.629596 TGGACCACTAGAGATCCGGT 59.370 55.000 0.00 0.00 33.63 5.28
2225 2283 4.226846 AGGTCAGACTGTGATCATTTCCAT 59.773 41.667 0.00 0.00 39.00 3.41
2229 2287 5.188359 TCAGACTGTGATCATTTCCATCTCA 59.812 40.000 0.00 0.00 0.00 3.27
2238 2296 3.380320 TCATTTCCATCTCATTGCTGCTG 59.620 43.478 0.00 0.00 0.00 4.41
2312 2370 7.600752 AGAGAACGAGAAATTTTCCTACTTCAG 59.399 37.037 5.52 0.00 0.00 3.02
2440 2499 4.721132 TCAATGTCGGGGTAAAAGAAGTT 58.279 39.130 0.00 0.00 0.00 2.66
2599 2713 8.599624 AAAAGTCATTCCAGAATTGATATGGT 57.400 30.769 0.00 0.00 35.51 3.55
2602 2716 8.230472 AGTCATTCCAGAATTGATATGGTTTC 57.770 34.615 0.00 0.00 35.51 2.78
2607 2729 7.870509 TCCAGAATTGATATGGTTTCTCTTG 57.129 36.000 0.00 0.00 35.51 3.02
2623 2745 9.880064 GGTTTCTCTTGAAAGTAATTAGAACAC 57.120 33.333 0.00 0.00 42.15 3.32
2647 2769 8.016801 CACAAAAATTCAAAGGGATAAACATGC 58.983 33.333 0.00 0.00 0.00 4.06
2658 2780 5.186992 AGGGATAAACATGCCCAACTTTTAC 59.813 40.000 7.94 0.00 44.55 2.01
2661 2783 7.255569 GGATAAACATGCCCAACTTTTACTAC 58.744 38.462 0.00 0.00 0.00 2.73
2665 2787 7.448748 AACATGCCCAACTTTTACTACTTAG 57.551 36.000 0.00 0.00 0.00 2.18
2666 2788 6.775708 ACATGCCCAACTTTTACTACTTAGA 58.224 36.000 0.00 0.00 0.00 2.10
2667 2789 7.228590 ACATGCCCAACTTTTACTACTTAGAA 58.771 34.615 0.00 0.00 0.00 2.10
2668 2790 7.722285 ACATGCCCAACTTTTACTACTTAGAAA 59.278 33.333 0.00 0.00 0.00 2.52
2669 2791 8.573035 CATGCCCAACTTTTACTACTTAGAAAA 58.427 33.333 0.00 0.00 0.00 2.29
2670 2792 8.700439 TGCCCAACTTTTACTACTTAGAAAAT 57.300 30.769 0.00 0.00 0.00 1.82
2671 2793 8.573035 TGCCCAACTTTTACTACTTAGAAAATG 58.427 33.333 0.00 0.00 0.00 2.32
2687 2809 9.783425 CTTAGAAAATGAAAAATCGCAAGTTTC 57.217 29.630 0.00 0.00 39.48 2.78
2709 2838 6.072112 TCAAATCCTTGAGTTTGCAGTAAC 57.928 37.500 0.00 0.00 36.62 2.50
2715 2844 5.526111 TCCTTGAGTTTGCAGTAACTACAAC 59.474 40.000 3.78 0.00 38.43 3.32
2724 2853 4.271533 TGCAGTAACTACAACAGGAAAACG 59.728 41.667 0.00 0.00 0.00 3.60
2737 2866 6.295719 ACAGGAAAACGTCTCTGGTAATAT 57.704 37.500 0.00 0.00 32.03 1.28
2738 2867 6.708285 ACAGGAAAACGTCTCTGGTAATATT 58.292 36.000 0.00 0.00 32.03 1.28
2742 2871 8.727910 AGGAAAACGTCTCTGGTAATATTTTTC 58.272 33.333 0.00 0.00 32.26 2.29
2743 2872 8.508875 GGAAAACGTCTCTGGTAATATTTTTCA 58.491 33.333 0.00 0.00 33.88 2.69
2751 2880 9.679661 TCTCTGGTAATATTTTTCATAGTGCAA 57.320 29.630 0.00 0.00 0.00 4.08
2774 2903 8.276325 GCAAAATACCATACTCTCATTTAGTCG 58.724 37.037 0.00 0.00 0.00 4.18
2788 2917 5.419155 TCATTTAGTCGTTCATCAGAGGAGT 59.581 40.000 0.00 0.00 0.00 3.85
2807 2936 4.863131 GGAGTTGTACATGTTCTAACGAGG 59.137 45.833 2.30 0.00 0.00 4.63
2809 2938 5.227908 AGTTGTACATGTTCTAACGAGGTG 58.772 41.667 2.30 0.00 0.00 4.00
2811 2940 2.831685 ACATGTTCTAACGAGGTGCA 57.168 45.000 0.00 0.00 0.00 4.57
2843 2972 2.968574 ACCTTGCTCAGAGAAGAACTGA 59.031 45.455 0.00 0.00 41.26 3.41
2844 2973 3.244044 ACCTTGCTCAGAGAAGAACTGAC 60.244 47.826 0.00 0.00 39.10 3.51
2848 2977 3.244009 TGCTCAGAGAAGAACTGACAAGG 60.244 47.826 0.00 0.00 39.10 3.61
2851 2980 3.322254 TCAGAGAAGAACTGACAAGGGTC 59.678 47.826 0.00 0.00 44.57 4.46
3227 3360 7.861629 TCACAATTTCCCAGACTAGACATATT 58.138 34.615 0.00 0.00 0.00 1.28
3245 3380 5.162648 ACATATTCCTCCCTGTTCCCCTATA 60.163 44.000 0.00 0.00 0.00 1.31
3264 3399 8.353684 CCCCTATATTCTCTATGTAAGCATACG 58.646 40.741 0.00 0.00 36.58 3.06
3301 3436 7.971201 TGCAATAGATTCATATGGTCTTCTCT 58.029 34.615 14.13 6.08 0.00 3.10
3354 3489 7.581213 ACTACCATCTAGAGAAGTCATTCAG 57.419 40.000 0.00 0.00 37.94 3.02
3711 4028 0.464013 GCAGCAGCATGGACTCATCT 60.464 55.000 0.00 0.00 41.58 2.90
3720 4037 6.493116 CAGCATGGACTCATCTGTTAATTTC 58.507 40.000 0.00 0.00 30.78 2.17
3824 4141 3.878778 TGTACTCGTAGGGGTTCTCTAC 58.121 50.000 0.00 0.00 35.13 2.59
3837 4154 1.393603 TCTCTACCATCCTCTGCACG 58.606 55.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.405526 GCTTCATACGGAGTCTTGCCA 60.406 52.381 0.00 0.00 43.93 4.92
39 40 2.898705 AGATGAGACACATTCGGCTTC 58.101 47.619 0.00 0.00 39.56 3.86
75 76 2.476051 GTCTTCACATGCGCCACG 59.524 61.111 4.18 0.00 0.00 4.94
102 103 3.126001 TCGGCAAACTTTGAGAGATGT 57.874 42.857 5.65 0.00 0.00 3.06
150 151 1.112113 TGCCGGAACTCCTCTCATAC 58.888 55.000 5.05 0.00 0.00 2.39
153 154 2.283529 GGTGCCGGAACTCCTCTCA 61.284 63.158 13.69 0.00 0.00 3.27
164 165 2.828549 GGTATGCCTTGGTGCCGG 60.829 66.667 0.00 0.00 0.00 6.13
190 191 0.389948 AGACGCTTGGTTCGTGGATC 60.390 55.000 0.00 0.00 40.59 3.36
338 339 5.047847 TCAGACGATTCGAGTGAAGTTTTT 58.952 37.500 13.95 0.00 37.57 1.94
339 340 4.617959 TCAGACGATTCGAGTGAAGTTTT 58.382 39.130 13.95 0.00 37.57 2.43
340 341 4.238761 TCAGACGATTCGAGTGAAGTTT 57.761 40.909 13.95 0.00 37.57 2.66
341 342 3.917329 TCAGACGATTCGAGTGAAGTT 57.083 42.857 13.95 0.00 37.57 2.66
342 343 4.416620 GAATCAGACGATTCGAGTGAAGT 58.583 43.478 13.95 7.24 46.01 3.01
351 352 8.622640 CTTCGGTAAAGAGGAATCAGACGATTC 61.623 44.444 6.63 6.63 45.11 2.52
352 353 4.401519 TCGGTAAAGAGGAATCAGACGATT 59.598 41.667 0.00 0.00 44.75 3.34
353 354 3.952323 TCGGTAAAGAGGAATCAGACGAT 59.048 43.478 0.00 0.00 0.00 3.73
354 355 3.349927 TCGGTAAAGAGGAATCAGACGA 58.650 45.455 0.00 0.00 0.00 4.20
355 356 3.777465 TCGGTAAAGAGGAATCAGACG 57.223 47.619 0.00 0.00 0.00 4.18
356 357 5.326200 TCTTCGGTAAAGAGGAATCAGAC 57.674 43.478 0.00 0.00 39.12 3.51
357 358 5.624738 GCTTCTTCGGTAAAGAGGAATCAGA 60.625 44.000 1.57 0.00 44.69 3.27
358 359 4.568760 GCTTCTTCGGTAAAGAGGAATCAG 59.431 45.833 1.57 0.00 44.69 2.90
359 360 4.223032 AGCTTCTTCGGTAAAGAGGAATCA 59.777 41.667 1.57 0.00 44.69 2.57
360 361 4.760878 AGCTTCTTCGGTAAAGAGGAATC 58.239 43.478 1.57 0.00 44.69 2.52
361 362 4.828072 AGCTTCTTCGGTAAAGAGGAAT 57.172 40.909 1.57 0.00 44.69 3.01
362 363 4.202326 ACAAGCTTCTTCGGTAAAGAGGAA 60.202 41.667 0.00 0.00 44.69 3.36
363 364 3.323979 ACAAGCTTCTTCGGTAAAGAGGA 59.676 43.478 0.00 0.00 44.69 3.71
364 365 3.433615 CACAAGCTTCTTCGGTAAAGAGG 59.566 47.826 0.00 0.00 44.69 3.69
365 366 3.120511 GCACAAGCTTCTTCGGTAAAGAG 60.121 47.826 0.00 0.00 44.69 2.85
366 367 2.806244 GCACAAGCTTCTTCGGTAAAGA 59.194 45.455 0.00 0.00 42.35 2.52
367 368 3.188895 GCACAAGCTTCTTCGGTAAAG 57.811 47.619 0.00 0.00 37.91 1.85
390 391 3.454375 TCTTCCCGTGCTCGATTATTTC 58.546 45.455 10.21 0.00 39.71 2.17
391 392 3.536956 TCTTCCCGTGCTCGATTATTT 57.463 42.857 10.21 0.00 39.71 1.40
392 393 3.132289 TCTTCTTCCCGTGCTCGATTATT 59.868 43.478 10.21 0.00 39.71 1.40
393 394 2.693591 TCTTCTTCCCGTGCTCGATTAT 59.306 45.455 10.21 0.00 39.71 1.28
394 395 2.097036 TCTTCTTCCCGTGCTCGATTA 58.903 47.619 10.21 0.00 39.71 1.75
395 396 0.895530 TCTTCTTCCCGTGCTCGATT 59.104 50.000 10.21 0.00 39.71 3.34
396 397 1.115467 ATCTTCTTCCCGTGCTCGAT 58.885 50.000 10.21 0.00 39.71 3.59
397 398 0.173481 CATCTTCTTCCCGTGCTCGA 59.827 55.000 10.21 0.00 39.71 4.04
398 399 1.424493 GCATCTTCTTCCCGTGCTCG 61.424 60.000 0.14 0.14 33.25 5.03
399 400 0.391661 TGCATCTTCTTCCCGTGCTC 60.392 55.000 0.00 0.00 36.78 4.26
400 401 0.036732 TTGCATCTTCTTCCCGTGCT 59.963 50.000 0.00 0.00 36.78 4.40
401 402 0.449388 CTTGCATCTTCTTCCCGTGC 59.551 55.000 0.00 0.00 36.39 5.34
402 403 1.089920 CCTTGCATCTTCTTCCCGTG 58.910 55.000 0.00 0.00 0.00 4.94
403 404 0.035056 CCCTTGCATCTTCTTCCCGT 60.035 55.000 0.00 0.00 0.00 5.28
404 405 0.253044 TCCCTTGCATCTTCTTCCCG 59.747 55.000 0.00 0.00 0.00 5.14
405 406 1.409381 CCTCCCTTGCATCTTCTTCCC 60.409 57.143 0.00 0.00 0.00 3.97
406 407 1.561542 TCCTCCCTTGCATCTTCTTCC 59.438 52.381 0.00 0.00 0.00 3.46
407 408 3.212685 CATCCTCCCTTGCATCTTCTTC 58.787 50.000 0.00 0.00 0.00 2.87
408 409 2.579860 ACATCCTCCCTTGCATCTTCTT 59.420 45.455 0.00 0.00 0.00 2.52
409 410 2.172293 GACATCCTCCCTTGCATCTTCT 59.828 50.000 0.00 0.00 0.00 2.85
450 451 1.468520 CATTGCGGTCACCTTGGTTAG 59.531 52.381 0.00 0.00 0.00 2.34
451 452 1.529226 CATTGCGGTCACCTTGGTTA 58.471 50.000 0.00 0.00 0.00 2.85
507 508 3.803082 CACCTTGCGACCCATGCG 61.803 66.667 0.00 0.00 34.24 4.73
530 531 2.167918 GTCTTGCGCGTCGTTGTC 59.832 61.111 8.43 0.00 0.00 3.18
541 542 1.192793 GATCTCTACGCGTGTCTTGC 58.807 55.000 24.59 3.44 0.00 4.01
542 543 2.710760 GAGATCTCTACGCGTGTCTTG 58.289 52.381 24.59 7.59 0.00 3.02
543 544 1.328069 CGAGATCTCTACGCGTGTCTT 59.672 52.381 24.59 2.23 0.00 3.01
544 545 0.931702 CGAGATCTCTACGCGTGTCT 59.068 55.000 24.59 16.21 0.00 3.41
545 546 0.042013 CCGAGATCTCTACGCGTGTC 60.042 60.000 24.59 11.71 0.00 3.67
546 547 2.015382 CCGAGATCTCTACGCGTGT 58.985 57.895 24.59 6.91 0.00 4.49
547 548 1.369448 GCCGAGATCTCTACGCGTG 60.369 63.158 24.59 12.26 0.00 5.34
548 549 1.374343 TTGCCGAGATCTCTACGCGT 61.374 55.000 19.17 19.17 0.00 6.01
549 550 0.930742 GTTGCCGAGATCTCTACGCG 60.931 60.000 20.26 3.53 0.00 6.01
550 551 0.930742 CGTTGCCGAGATCTCTACGC 60.931 60.000 20.26 17.59 35.63 4.42
551 552 0.656259 TCGTTGCCGAGATCTCTACG 59.344 55.000 20.26 20.57 38.40 3.51
552 553 1.400846 TGTCGTTGCCGAGATCTCTAC 59.599 52.381 20.26 12.26 45.26 2.59
553 554 1.746470 TGTCGTTGCCGAGATCTCTA 58.254 50.000 20.26 4.30 45.26 2.43
554 555 1.107114 ATGTCGTTGCCGAGATCTCT 58.893 50.000 20.26 0.00 42.81 3.10
555 556 3.650409 ATGTCGTTGCCGAGATCTC 57.350 52.632 13.05 13.05 42.81 2.75
559 560 1.154093 GTCGATGTCGTTGCCGAGA 60.154 57.895 2.04 0.00 45.26 4.04
560 561 1.006825 TTGTCGATGTCGTTGCCGAG 61.007 55.000 2.04 0.00 45.26 4.63
561 562 1.007154 TTGTCGATGTCGTTGCCGA 60.007 52.632 2.04 0.00 41.73 5.54
562 563 1.129809 GTTGTCGATGTCGTTGCCG 59.870 57.895 2.04 0.00 40.80 5.69
563 564 1.129809 CGTTGTCGATGTCGTTGCC 59.870 57.895 2.04 0.00 40.80 4.52
564 565 0.091344 CTCGTTGTCGATGTCGTTGC 59.909 55.000 2.04 0.00 45.21 4.17
565 566 0.708370 CCTCGTTGTCGATGTCGTTG 59.292 55.000 2.04 0.00 45.21 4.10
566 567 1.007336 GCCTCGTTGTCGATGTCGTT 61.007 55.000 2.04 0.00 45.21 3.85
567 568 1.443872 GCCTCGTTGTCGATGTCGT 60.444 57.895 2.04 0.00 45.21 4.34
568 569 2.497092 CGCCTCGTTGTCGATGTCG 61.497 63.158 0.00 0.00 45.21 4.35
569 570 2.789203 GCGCCTCGTTGTCGATGTC 61.789 63.158 0.00 0.00 45.21 3.06
570 571 2.809601 GCGCCTCGTTGTCGATGT 60.810 61.111 0.00 0.00 45.21 3.06
571 572 0.869880 TATGCGCCTCGTTGTCGATG 60.870 55.000 4.18 0.00 45.21 3.84
572 573 0.595053 CTATGCGCCTCGTTGTCGAT 60.595 55.000 4.18 0.00 45.21 3.59
573 574 1.226575 CTATGCGCCTCGTTGTCGA 60.227 57.895 4.18 0.00 44.12 4.20
574 575 1.516386 ACTATGCGCCTCGTTGTCG 60.516 57.895 4.18 0.00 38.55 4.35
575 576 0.457853 TCACTATGCGCCTCGTTGTC 60.458 55.000 4.18 0.00 0.00 3.18
576 577 0.175760 ATCACTATGCGCCTCGTTGT 59.824 50.000 4.18 0.00 0.00 3.32
577 578 0.578683 CATCACTATGCGCCTCGTTG 59.421 55.000 4.18 0.00 0.00 4.10
578 579 0.459899 TCATCACTATGCGCCTCGTT 59.540 50.000 4.18 0.00 32.76 3.85
579 580 0.676184 ATCATCACTATGCGCCTCGT 59.324 50.000 4.18 0.00 32.76 4.18
580 581 1.066136 CATCATCACTATGCGCCTCG 58.934 55.000 4.18 0.00 32.76 4.63
581 582 2.064762 GTCATCATCACTATGCGCCTC 58.935 52.381 4.18 0.00 32.76 4.70
582 583 1.413812 TGTCATCATCACTATGCGCCT 59.586 47.619 4.18 0.00 32.76 5.52
583 584 1.869774 TGTCATCATCACTATGCGCC 58.130 50.000 4.18 0.00 32.76 6.53
584 585 3.495753 TGATTGTCATCATCACTATGCGC 59.504 43.478 0.00 0.00 34.22 6.09
585 586 5.464389 TCTTGATTGTCATCATCACTATGCG 59.536 40.000 0.00 0.00 39.28 4.73
586 587 6.856135 TCTTGATTGTCATCATCACTATGC 57.144 37.500 0.00 0.00 39.28 3.14
587 588 8.603242 TCATCTTGATTGTCATCATCACTATG 57.397 34.615 0.00 0.00 39.28 2.23
588 589 9.220767 CATCATCTTGATTGTCATCATCACTAT 57.779 33.333 0.00 0.00 39.28 2.12
589 590 7.660208 CCATCATCTTGATTGTCATCATCACTA 59.340 37.037 0.00 0.00 39.28 2.74
590 591 6.486993 CCATCATCTTGATTGTCATCATCACT 59.513 38.462 0.00 0.00 39.28 3.41
591 592 6.262496 ACCATCATCTTGATTGTCATCATCAC 59.738 38.462 0.00 0.00 39.28 3.06
592 593 6.362248 ACCATCATCTTGATTGTCATCATCA 58.638 36.000 0.00 0.00 39.28 3.07
593 594 6.879276 ACCATCATCTTGATTGTCATCATC 57.121 37.500 0.00 0.00 39.28 2.92
594 595 6.879276 GACCATCATCTTGATTGTCATCAT 57.121 37.500 13.75 0.00 44.37 2.45
599 600 4.183865 TCGTGACCATCATCTTGATTGTC 58.816 43.478 12.40 12.40 44.88 3.18
600 601 4.206477 TCGTGACCATCATCTTGATTGT 57.794 40.909 0.00 0.00 35.72 2.71
601 602 4.812626 TGATCGTGACCATCATCTTGATTG 59.187 41.667 0.00 0.00 34.28 2.67
602 603 4.813161 GTGATCGTGACCATCATCTTGATT 59.187 41.667 0.00 0.00 34.28 2.57
603 604 4.375272 GTGATCGTGACCATCATCTTGAT 58.625 43.478 0.00 0.00 37.65 2.57
604 605 3.734902 CGTGATCGTGACCATCATCTTGA 60.735 47.826 0.00 0.00 32.86 3.02
605 606 2.537214 CGTGATCGTGACCATCATCTTG 59.463 50.000 0.00 0.00 32.86 3.02
606 607 2.427095 TCGTGATCGTGACCATCATCTT 59.573 45.455 0.00 0.00 38.33 2.40
607 608 2.024414 TCGTGATCGTGACCATCATCT 58.976 47.619 0.00 0.00 38.33 2.90
608 609 2.120232 GTCGTGATCGTGACCATCATC 58.880 52.381 0.00 0.00 38.33 2.92
609 610 1.533965 CGTCGTGATCGTGACCATCAT 60.534 52.381 10.51 0.00 38.33 2.45
610 611 0.179174 CGTCGTGATCGTGACCATCA 60.179 55.000 10.51 0.00 38.33 3.07
611 612 0.098200 TCGTCGTGATCGTGACCATC 59.902 55.000 10.51 0.00 38.33 3.51
612 613 0.179171 GTCGTCGTGATCGTGACCAT 60.179 55.000 10.51 0.00 37.47 3.55
613 614 1.208358 GTCGTCGTGATCGTGACCA 59.792 57.895 10.51 0.00 37.47 4.02
614 615 0.723414 TAGTCGTCGTGATCGTGACC 59.277 55.000 10.51 0.18 40.93 4.02
615 616 1.795536 GTAGTCGTCGTGATCGTGAC 58.204 55.000 6.99 6.99 40.63 3.67
616 617 0.367887 CGTAGTCGTCGTGATCGTGA 59.632 55.000 0.00 0.00 38.33 4.35
617 618 1.186339 GCGTAGTCGTCGTGATCGTG 61.186 60.000 0.00 0.00 39.49 4.35
618 619 1.059994 GCGTAGTCGTCGTGATCGT 59.940 57.895 0.00 0.00 39.49 3.73
619 620 1.650536 GGCGTAGTCGTCGTGATCG 60.651 63.158 0.00 0.00 39.49 3.69
620 621 4.281946 GGCGTAGTCGTCGTGATC 57.718 61.111 0.00 0.00 39.49 2.92
638 639 3.849953 GTTGGCATCCGCGTCGTC 61.850 66.667 4.92 0.00 39.92 4.20
641 642 2.871427 GATCGTTGGCATCCGCGTC 61.871 63.158 4.92 0.00 39.92 5.19
642 643 2.890474 GATCGTTGGCATCCGCGT 60.890 61.111 4.92 0.00 39.92 6.01
643 644 3.640000 GGATCGTTGGCATCCGCG 61.640 66.667 0.00 0.00 39.92 6.46
651 652 0.600255 GGTAGATGCCGGATCGTTGG 60.600 60.000 5.05 0.00 36.04 3.77
652 653 0.104120 TGGTAGATGCCGGATCGTTG 59.896 55.000 5.05 0.00 36.04 4.10
653 654 0.104304 GTGGTAGATGCCGGATCGTT 59.896 55.000 5.05 0.00 36.04 3.85
654 655 1.740285 GTGGTAGATGCCGGATCGT 59.260 57.895 5.05 0.00 36.04 3.73
655 656 1.371758 CGTGGTAGATGCCGGATCG 60.372 63.158 5.05 0.00 36.04 3.69
656 657 1.664965 GCGTGGTAGATGCCGGATC 60.665 63.158 5.05 5.64 0.00 3.36
657 658 2.421739 GCGTGGTAGATGCCGGAT 59.578 61.111 5.05 0.00 0.00 4.18
662 663 2.279517 CTCGGGCGTGGTAGATGC 60.280 66.667 0.00 0.00 35.63 3.91
663 664 1.065928 GTCTCGGGCGTGGTAGATG 59.934 63.158 0.00 0.00 0.00 2.90
664 665 1.076923 AGTCTCGGGCGTGGTAGAT 60.077 57.895 0.00 0.00 0.00 1.98
665 666 1.748122 GAGTCTCGGGCGTGGTAGA 60.748 63.158 0.00 0.00 0.00 2.59
666 667 1.592400 TTGAGTCTCGGGCGTGGTAG 61.592 60.000 0.00 0.00 0.00 3.18
667 668 1.604308 TTGAGTCTCGGGCGTGGTA 60.604 57.895 0.00 0.00 0.00 3.25
668 669 2.915659 TTGAGTCTCGGGCGTGGT 60.916 61.111 0.00 0.00 0.00 4.16
669 670 2.432628 GTTGAGTCTCGGGCGTGG 60.433 66.667 0.00 0.00 0.00 4.94
670 671 2.805353 CGTTGAGTCTCGGGCGTG 60.805 66.667 0.00 0.00 0.00 5.34
671 672 4.052229 CCGTTGAGTCTCGGGCGT 62.052 66.667 15.88 0.00 42.61 5.68
674 675 0.109226 GAAGACCGTTGAGTCTCGGG 60.109 60.000 23.41 10.93 46.44 5.14
675 676 0.109226 GGAAGACCGTTGAGTCTCGG 60.109 60.000 19.99 19.99 46.44 4.63
676 677 0.882474 AGGAAGACCGTTGAGTCTCG 59.118 55.000 0.00 0.00 46.44 4.04
677 678 1.887198 TGAGGAAGACCGTTGAGTCTC 59.113 52.381 0.00 0.00 46.44 3.36
679 680 2.036089 ACTTGAGGAAGACCGTTGAGTC 59.964 50.000 0.00 0.00 41.83 3.36
680 681 2.040178 ACTTGAGGAAGACCGTTGAGT 58.960 47.619 0.00 0.00 41.83 3.41
681 682 2.408050 CACTTGAGGAAGACCGTTGAG 58.592 52.381 0.00 0.00 41.83 3.02
682 683 1.540363 GCACTTGAGGAAGACCGTTGA 60.540 52.381 0.00 0.00 41.83 3.18
683 684 0.868406 GCACTTGAGGAAGACCGTTG 59.132 55.000 0.00 0.00 41.83 4.10
684 685 0.468226 TGCACTTGAGGAAGACCGTT 59.532 50.000 0.00 0.00 41.83 4.44
685 686 0.687354 ATGCACTTGAGGAAGACCGT 59.313 50.000 0.00 0.00 41.83 4.83
686 687 1.363744 GATGCACTTGAGGAAGACCG 58.636 55.000 0.00 0.00 41.83 4.79
687 688 1.066858 TCGATGCACTTGAGGAAGACC 60.067 52.381 0.00 0.00 32.98 3.85
688 689 1.996191 GTCGATGCACTTGAGGAAGAC 59.004 52.381 0.00 0.00 32.98 3.01
689 690 1.402852 CGTCGATGCACTTGAGGAAGA 60.403 52.381 0.00 0.00 32.98 2.87
690 691 0.994995 CGTCGATGCACTTGAGGAAG 59.005 55.000 0.00 0.00 35.07 3.46
691 692 1.014044 GCGTCGATGCACTTGAGGAA 61.014 55.000 24.45 0.00 34.15 3.36
692 693 1.446099 GCGTCGATGCACTTGAGGA 60.446 57.895 24.45 0.00 34.15 3.71
693 694 2.456119 GGCGTCGATGCACTTGAGG 61.456 63.158 29.46 0.00 36.28 3.86
694 695 2.792290 CGGCGTCGATGCACTTGAG 61.792 63.158 29.46 10.31 39.00 3.02
695 696 2.809174 CGGCGTCGATGCACTTGA 60.809 61.111 29.46 0.00 39.00 3.02
696 697 2.809174 TCGGCGTCGATGCACTTG 60.809 61.111 29.46 16.20 40.88 3.16
704 705 0.876777 ACAAATTGTGTCGGCGTCGA 60.877 50.000 8.66 8.66 43.86 4.20
705 706 0.721155 CACAAATTGTGTCGGCGTCG 60.721 55.000 17.29 1.15 43.08 5.12
706 707 3.071495 CACAAATTGTGTCGGCGTC 57.929 52.632 17.29 0.72 43.08 5.19
715 716 2.038659 CTTGGGGGTGACACAAATTGT 58.961 47.619 8.08 0.00 43.10 2.71
716 717 2.038659 ACTTGGGGGTGACACAAATTG 58.961 47.619 8.08 0.00 32.66 2.32
717 718 2.470057 ACTTGGGGGTGACACAAATT 57.530 45.000 8.08 0.00 32.66 1.82
718 719 3.430453 CATACTTGGGGGTGACACAAAT 58.570 45.455 8.08 0.00 32.66 2.32
719 720 2.489985 CCATACTTGGGGGTGACACAAA 60.490 50.000 8.08 0.00 39.56 2.83
720 721 1.074727 CCATACTTGGGGGTGACACAA 59.925 52.381 8.08 0.00 39.56 3.33
721 722 0.695924 CCATACTTGGGGGTGACACA 59.304 55.000 8.08 0.00 39.56 3.72
722 723 3.569873 CCATACTTGGGGGTGACAC 57.430 57.895 0.00 0.00 39.56 3.67
732 733 5.878116 TGTTTCCTATTTCCGACCATACTTG 59.122 40.000 0.00 0.00 0.00 3.16
733 734 6.057321 TGTTTCCTATTTCCGACCATACTT 57.943 37.500 0.00 0.00 0.00 2.24
734 735 5.687166 TGTTTCCTATTTCCGACCATACT 57.313 39.130 0.00 0.00 0.00 2.12
735 736 6.289064 AGATGTTTCCTATTTCCGACCATAC 58.711 40.000 0.00 0.00 0.00 2.39
736 737 6.494666 AGATGTTTCCTATTTCCGACCATA 57.505 37.500 0.00 0.00 0.00 2.74
737 738 5.373812 AGATGTTTCCTATTTCCGACCAT 57.626 39.130 0.00 0.00 0.00 3.55
738 739 4.837093 AGATGTTTCCTATTTCCGACCA 57.163 40.909 0.00 0.00 0.00 4.02
739 740 4.575236 GGAAGATGTTTCCTATTTCCGACC 59.425 45.833 0.00 0.00 35.73 4.79
742 743 6.509418 TTTGGAAGATGTTTCCTATTTCCG 57.491 37.500 7.39 0.00 39.31 4.30
750 751 5.934043 CCCAAAGATTTTGGAAGATGTTTCC 59.066 40.000 19.41 0.00 42.06 3.13
755 756 4.540359 TGCCCAAAGATTTTGGAAGATG 57.460 40.909 19.41 5.95 42.06 2.90
763 764 9.517868 TTGATTATGAAAATGCCCAAAGATTTT 57.482 25.926 0.00 0.00 35.06 1.82
768 769 6.642430 TCCTTGATTATGAAAATGCCCAAAG 58.358 36.000 0.00 0.00 0.00 2.77
775 776 6.632909 TGTGGCTTCCTTGATTATGAAAATG 58.367 36.000 0.00 0.00 0.00 2.32
777 778 6.855763 ATGTGGCTTCCTTGATTATGAAAA 57.144 33.333 0.00 0.00 0.00 2.29
780 781 6.662755 ACTTATGTGGCTTCCTTGATTATGA 58.337 36.000 0.00 0.00 0.00 2.15
784 785 6.245408 TGTAACTTATGTGGCTTCCTTGATT 58.755 36.000 0.00 0.00 0.00 2.57
785 786 5.815581 TGTAACTTATGTGGCTTCCTTGAT 58.184 37.500 0.00 0.00 0.00 2.57
794 795 5.106157 ACAGCAGAAATGTAACTTATGTGGC 60.106 40.000 0.00 0.00 0.00 5.01
796 797 9.891828 TTAAACAGCAGAAATGTAACTTATGTG 57.108 29.630 0.00 0.00 0.00 3.21
803 804 9.730420 TCTCTTTTTAAACAGCAGAAATGTAAC 57.270 29.630 0.00 0.00 0.00 2.50
822 823 8.836413 TCATCGACACAAATTTAACTCTCTTTT 58.164 29.630 0.00 0.00 0.00 2.27
844 845 3.058639 GCACTTCCCAAGCGATATTCATC 60.059 47.826 0.00 0.00 0.00 2.92
847 848 2.288666 TGCACTTCCCAAGCGATATTC 58.711 47.619 0.00 0.00 0.00 1.75
848 849 2.418368 TGCACTTCCCAAGCGATATT 57.582 45.000 0.00 0.00 0.00 1.28
849 850 2.418368 TTGCACTTCCCAAGCGATAT 57.582 45.000 0.00 0.00 0.00 1.63
850 851 2.083774 CTTTGCACTTCCCAAGCGATA 58.916 47.619 0.00 0.00 0.00 2.92
851 852 0.883833 CTTTGCACTTCCCAAGCGAT 59.116 50.000 0.00 0.00 0.00 4.58
852 853 0.179032 TCTTTGCACTTCCCAAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
853 854 0.667993 TTCTTTGCACTTCCCAAGCG 59.332 50.000 0.00 0.00 0.00 4.68
854 855 1.603931 GCTTCTTTGCACTTCCCAAGC 60.604 52.381 0.00 0.00 0.00 4.01
855 856 1.335324 CGCTTCTTTGCACTTCCCAAG 60.335 52.381 0.00 0.00 0.00 3.61
856 857 0.667993 CGCTTCTTTGCACTTCCCAA 59.332 50.000 0.00 0.00 0.00 4.12
857 858 0.179032 TCGCTTCTTTGCACTTCCCA 60.179 50.000 0.00 0.00 0.00 4.37
861 862 4.370364 TCTTTTTCGCTTCTTTGCACTT 57.630 36.364 0.00 0.00 0.00 3.16
866 867 5.799936 TGACTTGTTCTTTTTCGCTTCTTTG 59.200 36.000 0.00 0.00 0.00 2.77
867 868 5.949735 TGACTTGTTCTTTTTCGCTTCTTT 58.050 33.333 0.00 0.00 0.00 2.52
873 874 4.034048 TGACTCTGACTTGTTCTTTTTCGC 59.966 41.667 0.00 0.00 0.00 4.70
881 882 6.260870 TCTGAGTATGACTCTGACTTGTTC 57.739 41.667 10.97 0.00 44.63 3.18
890 891 2.717390 ACACGCTCTGAGTATGACTCT 58.283 47.619 14.59 0.00 45.27 3.24
914 919 2.040947 TGGCACATATTCAGGGTTGTGA 59.959 45.455 6.12 0.00 41.50 3.58
927 932 4.261405 CGTGTTTTTCTTCCTTGGCACATA 60.261 41.667 0.00 0.00 39.30 2.29
960 965 1.614317 CCTTGAAGGGTAGTTGGCTGG 60.614 57.143 2.50 0.00 0.00 4.85
1009 1016 3.763057 TGGTTTTTCTAGAAGGGAAGGC 58.237 45.455 5.12 0.00 0.00 4.35
1010 1017 4.950475 GGATGGTTTTTCTAGAAGGGAAGG 59.050 45.833 5.12 0.00 0.00 3.46
1012 1019 4.606255 AGGGATGGTTTTTCTAGAAGGGAA 59.394 41.667 5.12 0.09 0.00 3.97
1013 1020 4.183916 AGGGATGGTTTTTCTAGAAGGGA 58.816 43.478 5.12 0.00 0.00 4.20
1014 1021 4.592997 AGGGATGGTTTTTCTAGAAGGG 57.407 45.455 5.12 0.00 0.00 3.95
1015 1022 7.578203 AGATAAGGGATGGTTTTTCTAGAAGG 58.422 38.462 5.12 0.00 0.00 3.46
1016 1023 9.114952 GAAGATAAGGGATGGTTTTTCTAGAAG 57.885 37.037 5.12 0.00 0.00 2.85
1017 1024 8.053355 GGAAGATAAGGGATGGTTTTTCTAGAA 58.947 37.037 0.00 0.00 0.00 2.10
1018 1025 7.366551 GGGAAGATAAGGGATGGTTTTTCTAGA 60.367 40.741 0.00 0.00 0.00 2.43
1019 1026 6.773200 GGGAAGATAAGGGATGGTTTTTCTAG 59.227 42.308 0.00 0.00 0.00 2.43
1020 1027 6.450352 AGGGAAGATAAGGGATGGTTTTTCTA 59.550 38.462 0.00 0.00 0.00 2.10
1022 1029 5.519808 AGGGAAGATAAGGGATGGTTTTTC 58.480 41.667 0.00 0.00 0.00 2.29
1027 1034 2.175715 GCAAGGGAAGATAAGGGATGGT 59.824 50.000 0.00 0.00 0.00 3.55
1029 1036 3.217626 GTGCAAGGGAAGATAAGGGATG 58.782 50.000 0.00 0.00 0.00 3.51
1058 1065 2.025605 CCCATGGCTGGTATATCTGCAT 60.026 50.000 15.75 5.79 41.37 3.96
1064 1071 3.259328 TGATGACCCATGGCTGGTATAT 58.741 45.455 6.09 0.00 41.37 0.86
1065 1072 2.700354 TGATGACCCATGGCTGGTATA 58.300 47.619 6.09 0.00 41.37 1.47
1079 1088 2.747446 ACGGCATACTTGGTTTGATGAC 59.253 45.455 0.00 0.00 0.00 3.06
1094 1103 1.089920 GACAATCTTCTGCACGGCAT 58.910 50.000 0.00 0.00 38.13 4.40
1172 1181 5.003804 GGTCAGAAATCCTTACTGCTTTGA 58.996 41.667 0.00 0.00 0.00 2.69
1173 1182 4.142816 CGGTCAGAAATCCTTACTGCTTTG 60.143 45.833 0.00 0.00 0.00 2.77
1265 1275 1.871418 CCTGATCTCCACCTCCTTGA 58.129 55.000 0.00 0.00 0.00 3.02
1332 1342 6.259608 CCTTCTTTAGGCTTGATATCACACTG 59.740 42.308 4.48 0.00 37.17 3.66
1336 1346 6.821388 TCTCCTTCTTTAGGCTTGATATCAC 58.179 40.000 4.48 0.00 44.37 3.06
1381 1391 2.069273 CTCGGTTACAGCAACTTCCAG 58.931 52.381 0.00 0.00 37.30 3.86
1476 1486 2.032528 TGCAACCCCTTCTCAGCG 59.967 61.111 0.00 0.00 0.00 5.18
1595 1605 4.310769 CAGACTGTCAACCTCCTGTTTAG 58.689 47.826 10.88 0.00 34.00 1.85
1636 1646 1.040646 CTATGGCAGCTACCGAGGAA 58.959 55.000 0.00 0.00 0.00 3.36
1690 1714 9.462174 CTAATTGCTTGACAAATAACAACTTCA 57.538 29.630 0.00 0.00 42.86 3.02
1691 1740 9.677567 TCTAATTGCTTGACAAATAACAACTTC 57.322 29.630 0.00 0.00 42.86 3.01
1692 1741 9.683069 CTCTAATTGCTTGACAAATAACAACTT 57.317 29.630 0.00 0.00 42.86 2.66
1706 1755 7.010183 CCTTCAATTTGCATCTCTAATTGCTTG 59.990 37.037 13.56 7.67 43.11 4.01
1710 1759 6.870769 ACCCTTCAATTTGCATCTCTAATTG 58.129 36.000 12.57 12.57 44.04 2.32
1715 1764 5.813513 AAAACCCTTCAATTTGCATCTCT 57.186 34.783 0.00 0.00 0.00 3.10
1716 1765 6.101997 CCTAAAACCCTTCAATTTGCATCTC 58.898 40.000 0.00 0.00 0.00 2.75
1717 1766 5.046376 CCCTAAAACCCTTCAATTTGCATCT 60.046 40.000 0.00 0.00 0.00 2.90
1718 1767 5.178061 CCCTAAAACCCTTCAATTTGCATC 58.822 41.667 0.00 0.00 0.00 3.91
1719 1768 4.597075 ACCCTAAAACCCTTCAATTTGCAT 59.403 37.500 0.00 0.00 0.00 3.96
1721 1770 4.617253 ACCCTAAAACCCTTCAATTTGC 57.383 40.909 0.00 0.00 0.00 3.68
1722 1771 6.667848 AGGATACCCTAAAACCCTTCAATTTG 59.332 38.462 0.00 0.00 42.15 2.32
1723 1772 6.811574 AGGATACCCTAAAACCCTTCAATTT 58.188 36.000 0.00 0.00 42.15 1.82
1724 1773 6.219772 AGAGGATACCCTAAAACCCTTCAATT 59.780 38.462 0.00 0.00 44.53 2.32
1725 1774 5.736616 AGAGGATACCCTAAAACCCTTCAAT 59.263 40.000 0.00 0.00 44.53 2.57
1726 1775 5.045140 CAGAGGATACCCTAAAACCCTTCAA 60.045 44.000 0.00 0.00 44.53 2.69
1727 1776 4.473559 CAGAGGATACCCTAAAACCCTTCA 59.526 45.833 0.00 0.00 44.53 3.02
1728 1777 4.720273 TCAGAGGATACCCTAAAACCCTTC 59.280 45.833 0.00 0.00 44.53 3.46
1729 1778 4.473922 GTCAGAGGATACCCTAAAACCCTT 59.526 45.833 0.00 0.00 44.53 3.95
1730 1779 4.038633 GTCAGAGGATACCCTAAAACCCT 58.961 47.826 0.00 0.00 44.53 4.34
1731 1780 3.136077 GGTCAGAGGATACCCTAAAACCC 59.864 52.174 0.00 0.00 44.53 4.11
1732 1781 4.038633 AGGTCAGAGGATACCCTAAAACC 58.961 47.826 0.00 0.00 44.53 3.27
1733 1782 5.695424 AAGGTCAGAGGATACCCTAAAAC 57.305 43.478 0.00 0.00 44.53 2.43
1734 1783 5.365895 GCTAAGGTCAGAGGATACCCTAAAA 59.634 44.000 0.00 0.00 44.53 1.52
1735 1784 4.900054 GCTAAGGTCAGAGGATACCCTAAA 59.100 45.833 0.00 0.00 44.53 1.85
1736 1785 4.170251 AGCTAAGGTCAGAGGATACCCTAA 59.830 45.833 0.00 0.00 44.53 2.69
1737 1786 3.727923 AGCTAAGGTCAGAGGATACCCTA 59.272 47.826 0.00 0.00 44.53 3.53
1738 1787 9.768035 GAACTAGCTAAGGTCAGAGGATACCCT 62.768 48.148 0.00 0.00 43.13 4.34
1739 1788 2.965562 AGCTAAGGTCAGAGGATACCC 58.034 52.381 0.00 0.00 36.34 3.69
1740 1789 4.732065 ACTAGCTAAGGTCAGAGGATACC 58.268 47.826 0.00 0.00 35.91 2.73
1741 1790 6.321848 GAACTAGCTAAGGTCAGAGGATAC 57.678 45.833 0.00 0.00 42.02 2.24
1750 1799 7.910683 GTGCATTTATTTGAACTAGCTAAGGTC 59.089 37.037 0.00 0.00 42.83 3.85
1751 1800 7.611855 AGTGCATTTATTTGAACTAGCTAAGGT 59.388 33.333 0.00 0.00 33.51 3.50
1752 1801 7.989826 AGTGCATTTATTTGAACTAGCTAAGG 58.010 34.615 0.00 0.00 33.51 2.69
1755 1804 9.443323 TGTTAGTGCATTTATTTGAACTAGCTA 57.557 29.630 7.63 0.00 38.64 3.32
1756 1805 8.335532 TGTTAGTGCATTTATTTGAACTAGCT 57.664 30.769 7.63 0.00 38.64 3.32
1757 1806 8.964420 TTGTTAGTGCATTTATTTGAACTAGC 57.036 30.769 0.00 0.87 38.64 3.42
1788 1837 7.107639 TGAAAATTCCGAAAGACCTCTTTTT 57.892 32.000 1.85 0.00 45.37 1.94
1789 1838 6.321435 ACTGAAAATTCCGAAAGACCTCTTTT 59.679 34.615 1.85 0.00 45.37 2.27
1791 1840 5.377478 ACTGAAAATTCCGAAAGACCTCTT 58.623 37.500 0.00 0.00 37.91 2.85
1792 1841 4.974399 ACTGAAAATTCCGAAAGACCTCT 58.026 39.130 0.00 0.00 0.00 3.69
1793 1842 5.238650 TGAACTGAAAATTCCGAAAGACCTC 59.761 40.000 0.00 0.00 0.00 3.85
1794 1843 5.130350 TGAACTGAAAATTCCGAAAGACCT 58.870 37.500 0.00 0.00 0.00 3.85
1795 1844 5.432885 TGAACTGAAAATTCCGAAAGACC 57.567 39.130 0.00 0.00 0.00 3.85
1796 1845 7.647715 TCAAATGAACTGAAAATTCCGAAAGAC 59.352 33.333 0.00 0.00 0.00 3.01
1797 1846 7.711846 TCAAATGAACTGAAAATTCCGAAAGA 58.288 30.769 0.00 0.00 0.00 2.52
1798 1847 7.928908 TCAAATGAACTGAAAATTCCGAAAG 57.071 32.000 0.00 0.00 0.00 2.62
1799 1848 8.763356 CAATCAAATGAACTGAAAATTCCGAAA 58.237 29.630 0.00 0.00 0.00 3.46
1800 1849 8.140628 TCAATCAAATGAACTGAAAATTCCGAA 58.859 29.630 0.00 0.00 0.00 4.30
1801 1850 7.656412 TCAATCAAATGAACTGAAAATTCCGA 58.344 30.769 0.00 0.00 0.00 4.55
1802 1851 7.872163 TCAATCAAATGAACTGAAAATTCCG 57.128 32.000 0.00 0.00 0.00 4.30
1814 1863 8.160765 TGACCCTAACTAGTTCAATCAAATGAA 58.839 33.333 12.39 0.00 36.99 2.57
1815 1864 7.685481 TGACCCTAACTAGTTCAATCAAATGA 58.315 34.615 12.39 0.00 0.00 2.57
1816 1865 7.824289 TCTGACCCTAACTAGTTCAATCAAATG 59.176 37.037 12.39 1.90 0.00 2.32
1817 1866 7.918076 TCTGACCCTAACTAGTTCAATCAAAT 58.082 34.615 12.39 0.00 0.00 2.32
1818 1867 7.311092 TCTGACCCTAACTAGTTCAATCAAA 57.689 36.000 12.39 0.00 0.00 2.69
1819 1868 6.070767 CCTCTGACCCTAACTAGTTCAATCAA 60.071 42.308 12.39 0.00 0.00 2.57
1820 1869 5.422331 CCTCTGACCCTAACTAGTTCAATCA 59.578 44.000 12.39 10.79 0.00 2.57
1821 1870 5.163395 CCCTCTGACCCTAACTAGTTCAATC 60.163 48.000 12.39 6.75 0.00 2.67
1822 1871 4.717280 CCCTCTGACCCTAACTAGTTCAAT 59.283 45.833 12.39 0.00 0.00 2.57
1823 1872 4.094476 CCCTCTGACCCTAACTAGTTCAA 58.906 47.826 12.39 0.00 0.00 2.69
1824 1873 3.077088 ACCCTCTGACCCTAACTAGTTCA 59.923 47.826 12.39 2.51 0.00 3.18
1825 1874 3.710724 ACCCTCTGACCCTAACTAGTTC 58.289 50.000 12.39 0.00 0.00 3.01
1826 1875 3.848978 ACCCTCTGACCCTAACTAGTT 57.151 47.619 13.68 13.68 0.00 2.24
1827 1876 3.053019 GGTACCCTCTGACCCTAACTAGT 60.053 52.174 0.00 0.00 0.00 2.57
1828 1877 3.564264 GGTACCCTCTGACCCTAACTAG 58.436 54.545 0.00 0.00 0.00 2.57
1829 1878 3.677156 GGTACCCTCTGACCCTAACTA 57.323 52.381 0.00 0.00 0.00 2.24
1830 1879 2.546652 GGTACCCTCTGACCCTAACT 57.453 55.000 0.00 0.00 0.00 2.24
1845 1894 2.930950 TCTAGGCATGCAAATGGGTAC 58.069 47.619 21.36 0.00 0.00 3.34
1846 1895 3.554934 CTTCTAGGCATGCAAATGGGTA 58.445 45.455 21.36 0.00 0.00 3.69
1847 1896 2.381911 CTTCTAGGCATGCAAATGGGT 58.618 47.619 21.36 0.00 0.00 4.51
1848 1897 1.068127 GCTTCTAGGCATGCAAATGGG 59.932 52.381 21.36 6.30 0.00 4.00
1849 1898 1.752498 TGCTTCTAGGCATGCAAATGG 59.248 47.619 21.36 6.92 37.29 3.16
1850 1899 3.513680 TTGCTTCTAGGCATGCAAATG 57.486 42.857 21.36 6.46 41.58 2.32
1851 1900 4.081309 ACAATTGCTTCTAGGCATGCAAAT 60.081 37.500 21.36 7.30 46.31 2.32
1852 1901 3.258872 ACAATTGCTTCTAGGCATGCAAA 59.741 39.130 21.36 5.46 46.31 3.68
1854 1903 2.424601 GACAATTGCTTCTAGGCATGCA 59.575 45.455 21.36 0.00 42.09 3.96
1855 1904 2.424601 TGACAATTGCTTCTAGGCATGC 59.575 45.455 9.90 9.90 42.09 4.06
1856 1905 4.607955 CATGACAATTGCTTCTAGGCATG 58.392 43.478 5.05 0.00 42.09 4.06
1857 1906 3.067742 GCATGACAATTGCTTCTAGGCAT 59.932 43.478 5.05 0.00 42.09 4.40
1858 1907 2.424601 GCATGACAATTGCTTCTAGGCA 59.575 45.455 5.05 0.00 40.74 4.75
1859 1908 2.424601 TGCATGACAATTGCTTCTAGGC 59.575 45.455 5.05 1.86 40.77 3.93
1860 1909 4.707030 TTGCATGACAATTGCTTCTAGG 57.293 40.909 5.05 0.00 40.77 3.02
1890 1939 9.256477 CTAGTTGCATTGCATGAAAAATCATAT 57.744 29.630 12.95 0.00 38.76 1.78
1898 1947 5.221402 TGGTTTCTAGTTGCATTGCATGAAA 60.221 36.000 12.95 15.96 38.76 2.69
1900 1949 3.825585 TGGTTTCTAGTTGCATTGCATGA 59.174 39.130 12.95 6.16 38.76 3.07
1949 1998 9.770097 TTTTGCAATGGACAATGATTTTAGTTA 57.230 25.926 0.00 0.00 0.00 2.24
1954 2003 7.571080 AAGTTTTGCAATGGACAATGATTTT 57.429 28.000 0.00 0.00 0.00 1.82
1971 2020 9.780413 GAGGAGATTATTAGCAGAAAAGTTTTG 57.220 33.333 5.36 0.00 0.00 2.44
1979 2028 6.814954 ACTTGGAGGAGATTATTAGCAGAA 57.185 37.500 0.00 0.00 0.00 3.02
1982 2031 9.561069 GAAATAACTTGGAGGAGATTATTAGCA 57.439 33.333 0.00 0.00 0.00 3.49
1991 2040 6.448369 TGAAAGGAAATAACTTGGAGGAGA 57.552 37.500 0.00 0.00 0.00 3.71
2030 2079 4.402155 TGATGCAGGTTTTTCAGTGTCTTT 59.598 37.500 0.00 0.00 0.00 2.52
2066 2115 3.008157 ACTCGTCTAAGACCTGTCTCAGA 59.992 47.826 0.00 0.00 39.39 3.27
2069 2118 2.679336 GGACTCGTCTAAGACCTGTCTC 59.321 54.545 0.00 0.00 39.39 3.36
2077 2126 3.008813 AGTGTACCTGGACTCGTCTAAGA 59.991 47.826 0.00 0.00 0.00 2.10
2103 2152 2.688446 AGCTATCTTTGGTCGATGACGA 59.312 45.455 0.00 0.00 46.56 4.20
2104 2153 3.085443 AGCTATCTTTGGTCGATGACG 57.915 47.619 0.00 0.00 41.26 4.35
2126 2175 9.401058 CTAGTGGTCCATCAAAAGAATTTATCT 57.599 33.333 0.00 0.00 37.28 1.98
2128 2177 9.401058 CTCTAGTGGTCCATCAAAAGAATTTAT 57.599 33.333 0.00 0.00 37.28 1.40
2129 2178 8.602424 TCTCTAGTGGTCCATCAAAAGAATTTA 58.398 33.333 0.00 0.00 37.28 1.40
2130 2179 7.461749 TCTCTAGTGGTCCATCAAAAGAATTT 58.538 34.615 0.00 0.00 42.41 1.82
2140 2189 1.889829 CCGGATCTCTAGTGGTCCATC 59.110 57.143 21.12 4.28 0.00 3.51
2152 2207 3.797184 GCACAGATTACAGACCGGATCTC 60.797 52.174 9.46 0.00 34.41 2.75
2155 2210 2.111384 AGCACAGATTACAGACCGGAT 58.889 47.619 9.46 0.00 0.00 4.18
2156 2211 1.557099 AGCACAGATTACAGACCGGA 58.443 50.000 9.46 0.00 0.00 5.14
2159 2214 5.073311 TCAGTTAGCACAGATTACAGACC 57.927 43.478 0.00 0.00 0.00 3.85
2160 2215 8.879342 ATTATCAGTTAGCACAGATTACAGAC 57.121 34.615 0.00 0.00 31.84 3.51
2222 2280 2.089201 TGTTCAGCAGCAATGAGATGG 58.911 47.619 0.00 0.00 33.21 3.51
2225 2283 1.817357 CCTGTTCAGCAGCAATGAGA 58.183 50.000 0.00 0.00 43.71 3.27
2229 2287 0.251033 TGAGCCTGTTCAGCAGCAAT 60.251 50.000 0.00 0.00 43.71 3.56
2238 2296 6.372659 TGTTTGATTATCTTCTGAGCCTGTTC 59.627 38.462 0.00 0.00 0.00 3.18
2364 2423 8.324191 ACTTCAGATCCTTCATAATTACAGGA 57.676 34.615 10.81 10.81 39.81 3.86
2374 2433 6.440010 TGAGAAAGAGACTTCAGATCCTTCAT 59.560 38.462 0.00 0.00 0.00 2.57
2375 2434 5.777223 TGAGAAAGAGACTTCAGATCCTTCA 59.223 40.000 0.00 0.00 0.00 3.02
2440 2499 0.035317 ATCGTGCAGCTTCCTGTTCA 59.965 50.000 0.00 0.00 41.26 3.18
2556 2648 7.108194 TGACTTTTATCAGTCTGAGATGCATT 58.892 34.615 8.82 0.00 43.32 3.56
2557 2649 6.647229 TGACTTTTATCAGTCTGAGATGCAT 58.353 36.000 8.82 0.00 43.32 3.96
2561 2653 7.855375 TGGAATGACTTTTATCAGTCTGAGAT 58.145 34.615 8.82 0.00 42.10 2.75
2577 2691 8.057623 AGAAACCATATCAATTCTGGAATGACT 58.942 33.333 0.00 0.00 34.08 3.41
2585 2699 9.784680 CTTTCAAGAGAAACCATATCAATTCTG 57.215 33.333 0.00 0.00 38.76 3.02
2623 2745 7.361971 GGGCATGTTTATCCCTTTGAATTTTTG 60.362 37.037 0.00 0.00 37.08 2.44
2624 2746 6.658816 GGGCATGTTTATCCCTTTGAATTTTT 59.341 34.615 0.00 0.00 37.08 1.94
2625 2747 6.179756 GGGCATGTTTATCCCTTTGAATTTT 58.820 36.000 0.00 0.00 37.08 1.82
2631 2753 3.515104 AGTTGGGCATGTTTATCCCTTTG 59.485 43.478 6.86 0.00 40.69 2.77
2636 2758 6.280855 AGTAAAAGTTGGGCATGTTTATCC 57.719 37.500 0.00 0.00 0.00 2.59
2642 2764 6.775708 TCTAAGTAGTAAAAGTTGGGCATGT 58.224 36.000 0.00 0.00 0.00 3.21
2658 2780 9.612620 ACTTGCGATTTTTCATTTTCTAAGTAG 57.387 29.630 0.00 0.00 0.00 2.57
2661 2783 9.783425 GAAACTTGCGATTTTTCATTTTCTAAG 57.217 29.630 0.00 0.00 30.91 2.18
2665 2787 8.819152 TTTGAAACTTGCGATTTTTCATTTTC 57.181 26.923 10.31 0.00 38.65 2.29
2666 2788 9.437045 GATTTGAAACTTGCGATTTTTCATTTT 57.563 25.926 10.31 1.93 38.65 1.82
2667 2789 8.069574 GGATTTGAAACTTGCGATTTTTCATTT 58.930 29.630 10.31 3.73 38.65 2.32
2668 2790 7.442062 AGGATTTGAAACTTGCGATTTTTCATT 59.558 29.630 10.31 3.99 38.65 2.57
2669 2791 6.930722 AGGATTTGAAACTTGCGATTTTTCAT 59.069 30.769 10.31 0.08 38.65 2.57
2670 2792 6.279882 AGGATTTGAAACTTGCGATTTTTCA 58.720 32.000 6.74 6.74 37.44 2.69
2671 2793 6.769608 AGGATTTGAAACTTGCGATTTTTC 57.230 33.333 0.00 2.47 0.00 2.29
2687 2809 6.076981 AGTTACTGCAAACTCAAGGATTTG 57.923 37.500 0.00 0.00 34.60 2.32
2709 2838 3.741344 CCAGAGACGTTTTCCTGTTGTAG 59.259 47.826 0.00 0.00 0.00 2.74
2715 2844 7.611213 AAATATTACCAGAGACGTTTTCCTG 57.389 36.000 0.00 0.00 0.00 3.86
2724 2853 9.109393 TGCACTATGAAAAATATTACCAGAGAC 57.891 33.333 11.02 5.77 0.00 3.36
2738 2867 9.461312 AGAGTATGGTATTTTGCACTATGAAAA 57.539 29.630 0.00 0.00 0.00 2.29
2742 2871 8.613060 ATGAGAGTATGGTATTTTGCACTATG 57.387 34.615 0.00 0.00 0.00 2.23
2743 2872 9.632638 AAATGAGAGTATGGTATTTTGCACTAT 57.367 29.630 0.00 0.00 0.00 2.12
2751 2880 9.530633 GAACGACTAAATGAGAGTATGGTATTT 57.469 33.333 0.00 0.00 0.00 1.40
2756 2885 7.203218 TGATGAACGACTAAATGAGAGTATGG 58.797 38.462 0.00 0.00 0.00 2.74
2774 2903 5.482908 ACATGTACAACTCCTCTGATGAAC 58.517 41.667 0.00 0.00 0.00 3.18
2788 2917 3.991773 GCACCTCGTTAGAACATGTACAA 59.008 43.478 0.00 0.00 0.00 2.41
2807 2936 2.863704 GCAAGGTCACCTGAAAATGCAC 60.864 50.000 11.92 0.00 32.13 4.57
2809 2938 1.615392 AGCAAGGTCACCTGAAAATGC 59.385 47.619 9.17 9.17 32.13 3.56
2811 2940 3.152341 CTGAGCAAGGTCACCTGAAAAT 58.848 45.455 0.00 0.00 32.13 1.82
2843 2972 4.985538 TCTAAATCTGCTTTGACCCTTGT 58.014 39.130 0.00 0.00 0.00 3.16
2844 2973 5.678107 GCATCTAAATCTGCTTTGACCCTTG 60.678 44.000 0.00 0.00 35.49 3.61
2848 2977 4.732938 GCAGCATCTAAATCTGCTTTGACC 60.733 45.833 6.24 0.00 46.22 4.02
2851 2980 4.365899 TGCAGCATCTAAATCTGCTTTG 57.634 40.909 13.54 0.00 46.22 2.77
2974 3103 9.477484 GTCAACTCTTCTATTCTCTGTTGTAAA 57.523 33.333 0.00 0.00 35.98 2.01
3181 3310 8.001881 TGTGAGAACTTAGTCAGATCCTTATC 57.998 38.462 0.00 0.00 0.00 1.75
3227 3360 3.475174 AGAATATAGGGGAACAGGGAGGA 59.525 47.826 0.00 0.00 0.00 3.71
3245 3380 5.730296 AGGCGTATGCTTACATAGAGAAT 57.270 39.130 6.92 0.00 39.44 2.40
3301 3436 7.094162 CCAGACAAACTAGATTCAGTGAGTAGA 60.094 40.741 0.00 0.00 0.00 2.59
3593 3908 4.345859 TCTTGTCCATTTCGTAAGGTGT 57.654 40.909 0.00 0.00 38.47 4.16
3689 4006 4.405671 AGTCCATGCTGCTGCGCT 62.406 61.111 9.73 0.00 43.34 5.92
3711 4028 5.129634 TGAGTGTCAGGCTTGAAATTAACA 58.870 37.500 0.00 0.00 34.49 2.41
3720 4037 5.819379 ACATAATGTATGAGTGTCAGGCTTG 59.181 40.000 2.34 0.00 39.45 4.01
3798 4115 4.864726 AGAACCCCTACGAGTACATTAGT 58.135 43.478 0.00 0.00 0.00 2.24
3824 4141 2.513204 CTGGCGTGCAGAGGATGG 60.513 66.667 0.00 0.00 0.00 3.51
3837 4154 0.383231 GATGCAGTATTGTGGCTGGC 59.617 55.000 0.00 0.00 33.62 4.85
4020 4340 6.266168 TGTTTAAAGGTGCATCCAGTATTG 57.734 37.500 0.00 0.00 39.02 1.90
4135 4480 8.932945 TGTCAGACTTGCTCTTACTTTATATG 57.067 34.615 1.31 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.