Multiple sequence alignment - TraesCS4A01G399400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G399400 chr4A 100.000 2578 0 0 728 3305 673974905 673977482 0.000000e+00 4761
1 TraesCS4A01G399400 chr4A 85.006 1654 166 47 962 2556 676546329 676547959 0.000000e+00 1605
2 TraesCS4A01G399400 chr4A 86.966 936 92 16 820 1729 674350673 674351604 0.000000e+00 1026
3 TraesCS4A01G399400 chr4A 90.119 759 53 12 2567 3305 674352534 674353290 0.000000e+00 966
4 TraesCS4A01G399400 chr4A 100.000 471 0 0 3671 4141 673977848 673978318 0.000000e+00 870
5 TraesCS4A01G399400 chr4A 90.280 607 56 2 2701 3305 676548044 676548649 0.000000e+00 791
6 TraesCS4A01G399400 chr4A 100.000 394 0 0 1 394 673974178 673974571 0.000000e+00 728
7 TraesCS4A01G399400 chr4A 93.777 466 25 2 3679 4141 674353484 674353948 0.000000e+00 697
8 TraesCS4A01G399400 chr4A 85.522 670 82 10 1778 2437 674351797 674352461 0.000000e+00 686
9 TraesCS4A01G399400 chr4A 85.065 462 57 10 3682 4141 676548695 676549146 1.050000e-125 460
10 TraesCS4A01G399400 chr7A 93.127 2590 112 29 741 3305 61796724 61794176 0.000000e+00 3736
11 TraesCS4A01G399400 chr7A 93.319 464 24 5 3683 4141 61794159 61793698 0.000000e+00 678
12 TraesCS4A01G399400 chr7A 93.403 288 12 6 5 287 61797144 61796859 1.780000e-113 420
13 TraesCS4A01G399400 chr7D 94.485 2339 88 16 990 3305 56991164 56988844 0.000000e+00 3567
14 TraesCS4A01G399400 chr7D 93.869 473 24 3 3673 4141 56988522 56988051 0.000000e+00 708
15 TraesCS4A01G399400 chr3D 93.093 2331 115 23 990 3292 545231681 545229369 0.000000e+00 3371
16 TraesCS4A01G399400 chr3D 92.635 353 20 3 3792 4141 545228983 545228634 1.720000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G399400 chr4A 673974178 673978318 4140 False 2119.666667 4761 100.000000 1 4141 3 chr4A.!!$F1 4140
1 TraesCS4A01G399400 chr4A 676546329 676549146 2817 False 952.000000 1605 86.783667 962 4141 3 chr4A.!!$F3 3179
2 TraesCS4A01G399400 chr4A 674350673 674353948 3275 False 843.750000 1026 89.096000 820 4141 4 chr4A.!!$F2 3321
3 TraesCS4A01G399400 chr7A 61793698 61797144 3446 True 1611.333333 3736 93.283000 5 4141 3 chr7A.!!$R1 4136
4 TraesCS4A01G399400 chr7D 56988051 56991164 3113 True 2137.500000 3567 94.177000 990 4141 2 chr7D.!!$R1 3151
5 TraesCS4A01G399400 chr3D 545228634 545231681 3047 True 1937.000000 3371 92.864000 990 4141 2 chr3D.!!$R1 3151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 960 1.361668 CGCGAATTCAGGGAGTGTGG 61.362 60.0 0.0 0.0 0.00 4.17 F
1452 1496 0.038892 GCATGTTGGAGGTTGCTGTG 60.039 55.0 0.0 0.0 32.41 3.66 F
1502 1546 0.868602 CGTGTGTTGAAGGACGACGT 60.869 55.0 0.0 0.0 35.76 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2725 2994 0.818296 ACATGTACGGCTCCTCTCAC 59.182 55.000 0.0 0.0 0.00 3.51 R
3065 3334 2.790433 TCAACAAACCATGTCCTAGCC 58.210 47.619 0.0 0.0 42.99 3.93 R
3251 3526 5.064071 GCCAGACAAACTAGATTTAGTGAGC 59.936 44.000 0.0 0.0 40.02 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 6.432162 GCCATTCATTTCCTAGATAAGCATCA 59.568 38.462 0.00 0.00 33.21 3.07
95 97 7.199541 AGATAAGCATCACACATAAGCATTC 57.800 36.000 0.00 0.00 33.21 2.67
105 107 4.157289 ACACATAAGCATTCAAAGGAGCAG 59.843 41.667 0.00 0.00 0.00 4.24
134 136 8.796475 AGAGCTGAGTCAAAAGCATAATTTAAA 58.204 29.630 0.00 0.00 42.06 1.52
257 262 3.462954 TGGGGAGCATGATTAATTCCTCA 59.537 43.478 2.11 2.11 36.10 3.86
278 283 5.067273 TCAACGGAAATGTCACTTACCAAT 58.933 37.500 0.00 0.00 0.00 3.16
287 292 8.865590 AAATGTCACTTACCAATGTTTGTTAC 57.134 30.769 0.00 0.00 0.00 2.50
288 293 7.817418 ATGTCACTTACCAATGTTTGTTACT 57.183 32.000 0.00 0.00 0.00 2.24
289 294 7.254227 TGTCACTTACCAATGTTTGTTACTC 57.746 36.000 0.00 0.00 0.00 2.59
290 295 6.261381 TGTCACTTACCAATGTTTGTTACTCC 59.739 38.462 0.00 0.00 0.00 3.85
291 296 5.467399 TCACTTACCAATGTTTGTTACTCCG 59.533 40.000 0.00 0.00 0.00 4.63
293 298 6.424509 CACTTACCAATGTTTGTTACTCCGTA 59.575 38.462 0.00 0.00 0.00 4.02
294 299 6.647895 ACTTACCAATGTTTGTTACTCCGTAG 59.352 38.462 0.00 0.00 0.00 3.51
295 300 5.217978 ACCAATGTTTGTTACTCCGTAGA 57.782 39.130 0.00 0.00 0.00 2.59
296 301 5.613329 ACCAATGTTTGTTACTCCGTAGAA 58.387 37.500 0.00 0.00 0.00 2.10
298 303 5.929992 CCAATGTTTGTTACTCCGTAGAAGA 59.070 40.000 0.00 0.00 0.00 2.87
300 305 7.201530 CCAATGTTTGTTACTCCGTAGAAGATC 60.202 40.741 0.00 0.00 0.00 2.75
301 306 6.335471 TGTTTGTTACTCCGTAGAAGATCA 57.665 37.500 0.00 0.00 0.00 2.92
303 308 7.383687 TGTTTGTTACTCCGTAGAAGATCATT 58.616 34.615 0.00 0.00 0.00 2.57
304 309 8.525316 TGTTTGTTACTCCGTAGAAGATCATTA 58.475 33.333 0.00 0.00 0.00 1.90
305 310 9.021863 GTTTGTTACTCCGTAGAAGATCATTAG 57.978 37.037 0.00 0.00 0.00 1.73
306 311 7.876936 TGTTACTCCGTAGAAGATCATTAGT 57.123 36.000 0.00 0.00 0.00 2.24
307 312 8.969260 TGTTACTCCGTAGAAGATCATTAGTA 57.031 34.615 0.00 0.00 0.00 1.82
309 314 9.054922 GTTACTCCGTAGAAGATCATTAGTAGT 57.945 37.037 0.00 0.00 0.00 2.73
311 316 8.522542 ACTCCGTAGAAGATCATTAGTAGTTT 57.477 34.615 0.00 0.00 0.00 2.66
312 317 9.624373 ACTCCGTAGAAGATCATTAGTAGTTTA 57.376 33.333 0.00 0.00 0.00 2.01
313 318 9.881529 CTCCGTAGAAGATCATTAGTAGTTTAC 57.118 37.037 0.00 0.00 0.00 2.01
314 319 9.399797 TCCGTAGAAGATCATTAGTAGTTTACA 57.600 33.333 0.00 0.00 0.00 2.41
342 347 9.995003 GAGATCATATTCTCTCATAAACTGGTT 57.005 33.333 0.00 0.00 39.27 3.67
346 351 9.605275 TCATATTCTCTCATAAACTGGTTTCTG 57.395 33.333 1.77 3.97 34.23 3.02
347 352 9.605275 CATATTCTCTCATAAACTGGTTTCTGA 57.395 33.333 11.73 11.73 35.38 3.27
355 360 2.932261 AACTGGTTTCTGACCTGGTTC 58.068 47.619 0.00 0.00 44.10 3.62
356 361 2.241176 AACTGGTTTCTGACCTGGTTCA 59.759 45.455 0.00 0.00 44.10 3.18
357 362 3.117512 AACTGGTTTCTGACCTGGTTCAT 60.118 43.478 0.00 0.00 44.10 2.57
360 365 4.937201 GGTTTCTGACCTGGTTCATTTT 57.063 40.909 0.00 0.00 45.55 1.82
361 366 4.871513 GGTTTCTGACCTGGTTCATTTTC 58.128 43.478 0.00 0.00 45.55 2.29
362 367 4.340950 GGTTTCTGACCTGGTTCATTTTCA 59.659 41.667 0.00 0.00 45.55 2.69
364 369 4.437682 TCTGACCTGGTTCATTTTCACT 57.562 40.909 0.00 0.00 0.00 3.41
365 370 4.792068 TCTGACCTGGTTCATTTTCACTT 58.208 39.130 0.00 0.00 0.00 3.16
366 371 4.821805 TCTGACCTGGTTCATTTTCACTTC 59.178 41.667 0.00 0.00 0.00 3.01
367 372 4.792068 TGACCTGGTTCATTTTCACTTCT 58.208 39.130 0.00 0.00 0.00 2.85
368 373 5.200483 TGACCTGGTTCATTTTCACTTCTT 58.800 37.500 0.00 0.00 0.00 2.52
369 374 6.361433 TGACCTGGTTCATTTTCACTTCTTA 58.639 36.000 0.00 0.00 0.00 2.10
370 375 7.004086 TGACCTGGTTCATTTTCACTTCTTAT 58.996 34.615 0.00 0.00 0.00 1.73
371 376 7.040478 TGACCTGGTTCATTTTCACTTCTTATG 60.040 37.037 0.00 0.00 0.00 1.90
372 377 6.777580 ACCTGGTTCATTTTCACTTCTTATGT 59.222 34.615 0.00 0.00 0.00 2.29
374 379 8.143835 CCTGGTTCATTTTCACTTCTTATGTTT 58.856 33.333 0.00 0.00 0.00 2.83
375 380 9.533253 CTGGTTCATTTTCACTTCTTATGTTTT 57.467 29.630 0.00 0.00 0.00 2.43
376 381 9.883142 TGGTTCATTTTCACTTCTTATGTTTTT 57.117 25.926 0.00 0.00 0.00 1.94
778 791 2.105134 ACACGGGAGTTACAAACCATGA 59.895 45.455 0.00 0.00 44.67 3.07
794 807 5.796424 ACCATGAAGCTGAAAAATCAAGT 57.204 34.783 0.00 0.00 0.00 3.16
912 925 4.557205 TCCGCTGTTAAGAAAGAGAGTTC 58.443 43.478 0.00 0.00 0.00 3.01
928 950 3.058293 AGAGTTCAATTTGCGCGAATTCA 60.058 39.130 28.74 17.25 30.29 2.57
938 960 1.361668 CGCGAATTCAGGGAGTGTGG 61.362 60.000 0.00 0.00 0.00 4.17
951 973 3.188667 GGGAGTGTGGAGAATCGAAAAAC 59.811 47.826 0.00 0.00 34.37 2.43
1013 1037 1.270550 CCTGAACATGTGCCAAGGAAC 59.729 52.381 4.43 0.00 0.00 3.62
1061 1086 5.138758 ACTACCCTTCAAGGTTTCCTTTT 57.861 39.130 1.78 0.00 41.69 2.27
1194 1225 1.800805 AGATTGTTGTGTCGCTCCAG 58.199 50.000 0.00 0.00 0.00 3.86
1452 1496 0.038892 GCATGTTGGAGGTTGCTGTG 60.039 55.000 0.00 0.00 32.41 3.66
1502 1546 0.868602 CGTGTGTTGAAGGACGACGT 60.869 55.000 0.00 0.00 35.76 4.34
1524 1568 6.127980 ACGTCGATCAGAGAAGAAGTTCAATA 60.128 38.462 5.50 0.00 34.82 1.90
1525 1569 6.915300 CGTCGATCAGAGAAGAAGTTCAATAT 59.085 38.462 5.50 0.00 34.82 1.28
1647 1691 2.033049 CAGTGCAGCATCTAATGGAAGC 59.967 50.000 0.00 0.00 38.75 3.86
1782 1851 9.811655 CAGTACATAGTTGTTATTTGTGAAGTG 57.188 33.333 0.00 0.00 37.28 3.16
2015 2243 6.238703 CCTTAGACGAGTCCAGGTAAACTATC 60.239 46.154 9.73 0.00 0.00 2.08
2041 2269 2.527100 GTCGACCAAAGATGTCTACGG 58.473 52.381 3.51 0.00 0.00 4.02
2042 2270 2.163010 GTCGACCAAAGATGTCTACGGA 59.837 50.000 3.51 0.00 0.00 4.69
2170 2402 3.118847 TGCTCAACAGGCTCAGAAGATAG 60.119 47.826 0.00 0.00 0.00 2.08
2304 2542 9.007901 CCTGTAATTGAATCTGAAGTCTCTTTT 57.992 33.333 0.00 0.00 0.00 2.27
2309 2547 9.909644 AATTGAATCTGAAGTCTCTTTTTCATG 57.090 29.630 0.00 0.00 33.25 3.07
2324 2562 4.380843 TTTCATGCCTAAGGTGGAAGAA 57.619 40.909 0.00 0.00 0.00 2.52
2459 2698 4.105697 ACCCAAGAGGAATAAGTTTGACCA 59.894 41.667 0.00 0.00 39.89 4.02
2527 2772 8.484641 TCTCAGACTGATAAATGACAATTGAC 57.515 34.615 13.59 6.72 0.00 3.18
2655 2911 5.971202 TCGCAAGTTTGAAATCTTGAGTTTC 59.029 36.000 17.97 0.00 42.22 2.78
2663 2919 6.773976 TGAAATCTTGAGTTTCCACTTTGT 57.226 33.333 0.00 0.00 35.28 2.83
2674 2930 6.970484 AGTTTCCACTTTGTAGTAAATGCAG 58.030 36.000 0.00 0.00 31.96 4.41
2815 3084 7.625553 CGAAGAGTAAAAGCAGATTTAGATGG 58.374 38.462 0.00 0.00 0.00 3.51
3065 3334 2.824936 AGTCATATCAGCATCCTCTCGG 59.175 50.000 0.00 0.00 0.00 4.63
3251 3526 9.205719 CAATAGATTCATATGGTCTTCTCACTG 57.794 37.037 14.13 0.00 0.00 3.66
3258 3533 2.876581 TGGTCTTCTCACTGCTCACTA 58.123 47.619 0.00 0.00 0.00 2.74
3695 3970 8.843885 TCAATCAACAAATGCATTAATGGAAA 57.156 26.923 13.39 0.00 0.00 3.13
3741 4016 2.161609 GCACCTTACGAAATGGACAAGG 59.838 50.000 0.00 0.00 41.29 3.61
3893 4170 8.638685 ATGTCAAAACTCAAAACATTCAGAAG 57.361 30.769 0.00 0.00 0.00 2.85
3916 4193 3.634397 TTGCACTGCTAGCCTTAAGAT 57.366 42.857 13.29 0.00 0.00 2.40
3917 4194 4.753516 TTGCACTGCTAGCCTTAAGATA 57.246 40.909 13.29 0.00 0.00 1.98
3999 4279 4.576463 GCATCAAGATGGTTCGGAAACTAT 59.424 41.667 7.38 0.00 39.08 2.12
4036 4316 4.825085 GTGTCCACTTTGAAGGAACCATTA 59.175 41.667 0.00 0.00 35.29 1.90
4082 4364 6.306987 TCCCCTTTTAGGAAATGAGATATGC 58.693 40.000 0.00 0.00 37.67 3.14
4087 4369 7.663081 CCTTTTAGGAAATGAGATATGCTAGCA 59.337 37.037 21.85 21.85 37.67 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.078249 TGCTTATCTAGGAAATGAATGGCTA 57.922 36.000 0.00 0.00 0.00 3.93
56 57 5.945310 TGCTTATCTAGGAAATGAATGGCT 58.055 37.500 0.00 0.00 0.00 4.75
82 84 4.081406 TGCTCCTTTGAATGCTTATGTGT 58.919 39.130 0.00 0.00 0.00 3.72
105 107 1.605710 TGCTTTTGACTCAGCTCTTGC 59.394 47.619 0.00 0.00 36.92 4.01
175 179 5.745312 TGCCAGAGAGAATTTTAGTGAGA 57.255 39.130 0.00 0.00 0.00 3.27
187 191 8.855110 TGTAACAAAATAAAATTGCCAGAGAGA 58.145 29.630 0.00 0.00 0.00 3.10
205 209 8.355913 TGCTGTCATGTGAAATTATGTAACAAA 58.644 29.630 0.00 0.00 0.00 2.83
257 262 4.825085 ACATTGGTAAGTGACATTTCCGTT 59.175 37.500 0.00 0.00 0.00 4.44
269 274 5.370679 ACGGAGTAACAAACATTGGTAAGT 58.629 37.500 0.00 0.00 41.94 2.24
278 283 6.335471 TGATCTTCTACGGAGTAACAAACA 57.665 37.500 0.00 0.00 45.13 2.83
287 292 9.881529 GTAAACTACTAATGATCTTCTACGGAG 57.118 37.037 0.00 0.00 0.00 4.63
288 293 9.399797 TGTAAACTACTAATGATCTTCTACGGA 57.600 33.333 0.00 0.00 0.00 4.69
316 321 9.995003 AACCAGTTTATGAGAGAATATGATCTC 57.005 33.333 9.51 9.51 45.06 2.75
320 325 9.605275 CAGAAACCAGTTTATGAGAGAATATGA 57.395 33.333 11.49 0.00 42.51 2.15
321 326 9.605275 TCAGAAACCAGTTTATGAGAGAATATG 57.395 33.333 14.74 0.00 43.30 1.78
340 345 5.067805 AGTGAAAATGAACCAGGTCAGAAAC 59.932 40.000 0.00 0.00 0.00 2.78
341 346 5.200483 AGTGAAAATGAACCAGGTCAGAAA 58.800 37.500 0.00 0.00 0.00 2.52
342 347 4.792068 AGTGAAAATGAACCAGGTCAGAA 58.208 39.130 0.00 0.00 0.00 3.02
343 348 4.437682 AGTGAAAATGAACCAGGTCAGA 57.562 40.909 0.00 0.00 0.00 3.27
344 349 4.823989 AGAAGTGAAAATGAACCAGGTCAG 59.176 41.667 0.00 0.00 0.00 3.51
345 350 4.792068 AGAAGTGAAAATGAACCAGGTCA 58.208 39.130 0.00 0.00 0.00 4.02
346 351 5.774498 AAGAAGTGAAAATGAACCAGGTC 57.226 39.130 0.00 0.00 0.00 3.85
347 352 6.777580 ACATAAGAAGTGAAAATGAACCAGGT 59.222 34.615 0.00 0.00 0.00 4.00
349 354 9.533253 AAAACATAAGAAGTGAAAATGAACCAG 57.467 29.630 0.00 0.00 0.00 4.00
350 355 9.883142 AAAAACATAAGAAGTGAAAATGAACCA 57.117 25.926 0.00 0.00 0.00 3.67
778 791 3.632145 ACCGTGACTTGATTTTTCAGCTT 59.368 39.130 0.00 0.00 0.00 3.74
794 807 3.575256 ACTACCATACTTTGTCACCGTGA 59.425 43.478 0.00 0.00 0.00 4.35
912 925 1.135431 TCCCTGAATTCGCGCAAATTG 60.135 47.619 11.74 0.00 0.00 2.32
928 950 1.938585 TTCGATTCTCCACACTCCCT 58.061 50.000 0.00 0.00 0.00 4.20
938 960 7.910683 ACTCAAACTCTTTGTTTTTCGATTCTC 59.089 33.333 0.00 0.00 45.69 2.87
967 989 1.873903 GCCATACACGCCCTGAGTATG 60.874 57.143 0.00 0.00 45.93 2.39
1061 1086 1.205655 GCAGGACATAGCTGACAGTCA 59.794 52.381 2.48 2.48 32.79 3.41
1194 1225 0.598680 CCAAGATCTCATCCGCCGAC 60.599 60.000 0.00 0.00 0.00 4.79
1351 1395 2.290577 CCTTCCTTTCCTTCTCCCTGTG 60.291 54.545 0.00 0.00 0.00 3.66
1352 1396 1.988846 CCTTCCTTTCCTTCTCCCTGT 59.011 52.381 0.00 0.00 0.00 4.00
1452 1496 4.516195 GCCGCCTCCTTCTCGGTC 62.516 72.222 1.83 0.00 44.58 4.79
1496 1540 1.723220 TCTTCTCTGATCGACGTCGT 58.277 50.000 34.40 22.83 40.80 4.34
1502 1546 7.223582 GCAATATTGAACTTCTTCTCTGATCGA 59.776 37.037 19.73 0.00 0.00 3.59
1647 1691 4.124238 TGTCAACCTCCTGTTTACTTTCG 58.876 43.478 0.00 0.00 34.00 3.46
2015 2243 2.404215 ACATCTTTGGTCGACGACTTG 58.596 47.619 25.87 15.70 32.47 3.16
2049 2281 2.381961 AGGCCCTTTGGAGGTTCATAAA 59.618 45.455 0.00 0.00 41.85 1.40
2059 2291 0.856982 TTTCAGGAAGGCCCTTTGGA 59.143 50.000 0.00 0.00 44.85 3.53
2170 2402 0.859232 ATGTGCGACTCGTGTTTGAC 59.141 50.000 0.00 0.00 0.00 3.18
2304 2542 3.330701 AGTTCTTCCACCTTAGGCATGAA 59.669 43.478 0.00 0.00 0.00 2.57
2309 2547 3.418684 TTGAGTTCTTCCACCTTAGGC 57.581 47.619 0.00 0.00 0.00 3.93
2324 2562 4.351111 ACTTCCTTTACCCTGACATTGAGT 59.649 41.667 0.00 0.00 0.00 3.41
2459 2698 9.312904 TCAAGAGGTCCATTTTAATGAATCTTT 57.687 29.630 4.07 0.00 38.70 2.52
2499 2738 8.944029 CAATTGTCATTTATCAGTCTGAGAAGT 58.056 33.333 9.71 4.84 28.62 3.01
2655 2911 6.170506 TCCTACTGCATTTACTACAAAGTGG 58.829 40.000 0.00 0.00 36.36 4.00
2663 2919 8.540388 AGAGATGTTTTCCTACTGCATTTACTA 58.460 33.333 0.00 0.00 0.00 1.82
2674 2930 3.552294 GCGCACTAGAGATGTTTTCCTAC 59.448 47.826 0.30 0.00 0.00 3.18
2725 2994 0.818296 ACATGTACGGCTCCTCTCAC 59.182 55.000 0.00 0.00 0.00 3.51
3065 3334 2.790433 TCAACAAACCATGTCCTAGCC 58.210 47.619 0.00 0.00 42.99 3.93
3251 3526 5.064071 GCCAGACAAACTAGATTTAGTGAGC 59.936 44.000 0.00 0.00 40.02 4.26
3258 3533 6.212791 TGGTAGTAGCCAGACAAACTAGATTT 59.787 38.462 0.00 0.00 33.97 2.17
3670 3945 8.843885 TTTCCATTAATGCATTTGTTGATTGA 57.156 26.923 18.75 0.00 0.00 2.57
3671 3946 9.549509 CTTTTCCATTAATGCATTTGTTGATTG 57.450 29.630 18.75 5.74 0.00 2.67
3672 3947 9.287373 ACTTTTCCATTAATGCATTTGTTGATT 57.713 25.926 18.75 0.00 0.00 2.57
3673 3948 8.723311 CACTTTTCCATTAATGCATTTGTTGAT 58.277 29.630 18.75 2.06 0.00 2.57
3674 3949 7.307870 GCACTTTTCCATTAATGCATTTGTTGA 60.308 33.333 18.75 7.24 33.27 3.18
3675 3950 6.797995 GCACTTTTCCATTAATGCATTTGTTG 59.202 34.615 18.75 12.29 33.27 3.33
3676 3951 6.485984 TGCACTTTTCCATTAATGCATTTGTT 59.514 30.769 18.75 0.00 38.11 2.83
3677 3952 5.996513 TGCACTTTTCCATTAATGCATTTGT 59.003 32.000 18.75 3.74 38.11 2.83
3695 3970 0.779997 ATCCTGGTTTCCCTGCACTT 59.220 50.000 0.00 0.00 0.00 3.16
3893 4170 1.453155 TAAGGCTAGCAGTGCAAAGC 58.547 50.000 26.06 26.06 38.50 3.51
3936 4213 2.247635 AGGATGCTAGAGAACCCCTACA 59.752 50.000 0.00 0.00 0.00 2.74
3963 4240 0.918258 TTGATGCAGTATGGCTGGGA 59.082 50.000 0.00 0.00 45.14 4.37
4036 4316 2.379907 ACCCATGTGGAAGTGAAGGATT 59.620 45.455 0.00 0.00 37.39 3.01
4087 4369 9.936759 TGAGGTGTTTCTTAAAATTGTTTTTCT 57.063 25.926 0.00 0.00 36.47 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.