Multiple sequence alignment - TraesCS4A01G399300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G399300 chr4A 100.000 3420 0 0 1 3420 673967948 673964529 0.000000e+00 6316.0
1 TraesCS4A01G399300 chr7A 88.527 1813 107 45 890 2636 61804835 61806612 0.000000e+00 2102.0
2 TraesCS4A01G399300 chr7A 89.002 491 53 1 1 491 535584802 535585291 1.050000e-169 606.0
3 TraesCS4A01G399300 chr7A 88.089 361 27 5 518 878 535585291 535585635 6.830000e-112 414.0
4 TraesCS4A01G399300 chr7A 87.603 121 14 1 3220 3339 61809103 61809223 4.600000e-29 139.0
5 TraesCS4A01G399300 chr7D 87.762 1814 121 52 864 2636 56998479 57000232 0.000000e+00 2026.0
6 TraesCS4A01G399300 chr7D 90.000 120 12 0 3220 3339 57073330 57073449 4.570000e-34 156.0
7 TraesCS4A01G399300 chr3D 89.378 1158 69 30 1372 2488 545251228 545252372 0.000000e+00 1408.0
8 TraesCS4A01G399300 chr3D 90.951 431 26 7 889 1319 545250795 545251212 4.950000e-158 568.0
9 TraesCS4A01G399300 chr3D 84.231 520 38 13 2933 3420 545253059 545253566 1.860000e-127 466.0
10 TraesCS4A01G399300 chr3D 95.238 63 3 0 2574 2636 545252864 545252926 2.170000e-17 100.0
11 TraesCS4A01G399300 chr1A 95.416 829 37 1 1 829 336462371 336461544 0.000000e+00 1319.0
12 TraesCS4A01G399300 chr3B 95.416 829 29 2 1 829 651411980 651411161 0.000000e+00 1312.0
13 TraesCS4A01G399300 chr3B 100.000 44 0 0 829 872 651411177 651411134 7.870000e-12 82.4
14 TraesCS4A01G399300 chr6B 96.471 85 3 0 745 829 609847059 609847143 1.280000e-29 141.0
15 TraesCS4A01G399300 chr6B 95.455 44 2 0 829 872 609847127 609847170 1.700000e-08 71.3
16 TraesCS4A01G399300 chr6D 96.923 65 1 1 766 829 71561824 71561888 1.300000e-19 108.0
17 TraesCS4A01G399300 chr6D 97.727 44 1 0 829 872 71561872 71561915 3.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G399300 chr4A 673964529 673967948 3419 True 6316.0 6316 100.0000 1 3420 1 chr4A.!!$R1 3419
1 TraesCS4A01G399300 chr7A 61804835 61809223 4388 False 1120.5 2102 88.0650 890 3339 2 chr7A.!!$F1 2449
2 TraesCS4A01G399300 chr7A 535584802 535585635 833 False 510.0 606 88.5455 1 878 2 chr7A.!!$F2 877
3 TraesCS4A01G399300 chr7D 56998479 57000232 1753 False 2026.0 2026 87.7620 864 2636 1 chr7D.!!$F1 1772
4 TraesCS4A01G399300 chr3D 545250795 545253566 2771 False 635.5 1408 89.9495 889 3420 4 chr3D.!!$F1 2531
5 TraesCS4A01G399300 chr1A 336461544 336462371 827 True 1319.0 1319 95.4160 1 829 1 chr1A.!!$R1 828
6 TraesCS4A01G399300 chr3B 651411134 651411980 846 True 697.2 1312 97.7080 1 872 2 chr3B.!!$R1 871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.829333 AGAACTCAGCATCGGCAGAT 59.171 50.0 0.00 0.0 44.61 2.90 F
1561 1572 0.244721 GCTGCAGGTTGATTTGGACC 59.755 55.0 17.12 0.0 36.15 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1669 0.033366 TACTTGAGCTGCTGCGACAA 59.967 50.0 21.56 21.56 45.42 3.18 R
2520 2609 0.031585 ACGAGCGCTCACACTTTGTA 59.968 50.0 34.69 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 4.999950 GGATCTGGTATCTGCGAAATGAAT 59.000 41.667 0.00 0.00 0.00 2.57
231 232 7.598869 CAGCTACTACAACACTTTCATACAGAA 59.401 37.037 0.00 0.00 0.00 3.02
247 248 0.829333 AGAACTCAGCATCGGCAGAT 59.171 50.000 0.00 0.00 44.61 2.90
356 357 1.676746 CAAGCCTCATGTGGGATCTG 58.323 55.000 15.39 5.20 0.00 2.90
376 377 1.819632 GGCGTTGGCTACTGATGGG 60.820 63.158 0.00 0.00 39.81 4.00
382 383 3.181465 CGTTGGCTACTGATGGGTCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
400 401 7.220030 GGTCTTATAATTCTTCAGATGGCTCA 58.780 38.462 0.00 0.00 0.00 4.26
403 404 3.648507 AATTCTTCAGATGGCTCAGCT 57.351 42.857 0.00 0.00 0.00 4.24
527 528 2.902608 TCTGGGAAGGACTAAAGCTGA 58.097 47.619 0.00 0.00 0.00 4.26
563 564 7.094291 ACTCTAGTGCTACGATTTTACTTCAGT 60.094 37.037 0.00 0.00 0.00 3.41
1037 1038 2.741985 CTCACCGGCGATGCAACA 60.742 61.111 9.30 0.00 0.00 3.33
1051 1052 1.871077 CAACAGATGCTTGCGCTGA 59.129 52.632 9.73 0.00 36.97 4.26
1061 1062 1.859427 CTTGCGCTGATGGCACTGTT 61.859 55.000 9.73 0.00 40.71 3.16
1065 1066 0.877071 CGCTGATGGCACTGTTTCTT 59.123 50.000 0.00 0.00 41.91 2.52
1075 1076 2.928731 GCACTGTTTCTTCTCCTCTCCG 60.929 54.545 0.00 0.00 0.00 4.63
1290 1291 3.182772 CGTCGTTACACTTACATGCACAA 59.817 43.478 0.00 0.00 0.00 3.33
1321 1322 0.829990 TGTCCTGCAACTGACACTCA 59.170 50.000 8.78 0.00 36.62 3.41
1322 1323 1.209261 TGTCCTGCAACTGACACTCAA 59.791 47.619 8.78 0.00 36.62 3.02
1325 1326 2.092968 TCCTGCAACTGACACTCAAAGT 60.093 45.455 0.00 0.00 0.00 2.66
1326 1327 3.133901 TCCTGCAACTGACACTCAAAGTA 59.866 43.478 0.00 0.00 0.00 2.24
1327 1328 3.496130 CCTGCAACTGACACTCAAAGTAG 59.504 47.826 0.00 0.00 0.00 2.57
1329 1330 5.270893 TGCAACTGACACTCAAAGTAGTA 57.729 39.130 0.00 0.00 0.00 1.82
1330 1331 5.853936 TGCAACTGACACTCAAAGTAGTAT 58.146 37.500 0.00 0.00 0.00 2.12
1331 1332 5.696270 TGCAACTGACACTCAAAGTAGTATG 59.304 40.000 0.00 0.00 0.00 2.39
1332 1333 5.926542 GCAACTGACACTCAAAGTAGTATGA 59.073 40.000 0.00 0.00 0.00 2.15
1333 1334 6.423905 GCAACTGACACTCAAAGTAGTATGAA 59.576 38.462 0.00 0.00 0.00 2.57
1334 1335 7.569591 GCAACTGACACTCAAAGTAGTATGAAC 60.570 40.741 0.00 0.00 0.00 3.18
1337 1342 7.653713 ACTGACACTCAAAGTAGTATGAACTTG 59.346 37.037 0.00 0.00 37.26 3.16
1371 1380 2.679336 GTGTGTAACGTGTTTGGAGGTT 59.321 45.455 0.00 0.00 42.39 3.50
1467 1476 2.978010 CTCACCGGCGCCAACTTT 60.978 61.111 28.98 1.21 0.00 2.66
1525 1536 3.001939 GGCCATGTATGTAAGTACAACGC 59.998 47.826 0.00 0.00 39.99 4.84
1527 1538 4.439057 CCATGTATGTAAGTACAACGCCT 58.561 43.478 0.00 0.00 39.99 5.52
1529 1540 6.220930 CCATGTATGTAAGTACAACGCCTAT 58.779 40.000 0.00 0.00 39.99 2.57
1537 1548 7.948357 TGTAAGTACAACGCCTATATCTTCAT 58.052 34.615 0.00 0.00 32.40 2.57
1539 1550 9.339492 GTAAGTACAACGCCTATATCTTCATAC 57.661 37.037 0.00 0.00 0.00 2.39
1540 1551 7.520451 AGTACAACGCCTATATCTTCATACA 57.480 36.000 0.00 0.00 0.00 2.29
1541 1552 7.948357 AGTACAACGCCTATATCTTCATACAA 58.052 34.615 0.00 0.00 0.00 2.41
1542 1553 8.082852 AGTACAACGCCTATATCTTCATACAAG 58.917 37.037 0.00 0.00 0.00 3.16
1543 1554 5.696724 ACAACGCCTATATCTTCATACAAGC 59.303 40.000 0.00 0.00 0.00 4.01
1544 1555 5.730296 ACGCCTATATCTTCATACAAGCT 57.270 39.130 0.00 0.00 0.00 3.74
1549 1560 5.873712 CCTATATCTTCATACAAGCTGCAGG 59.126 44.000 17.12 0.73 0.00 4.85
1561 1572 0.244721 GCTGCAGGTTGATTTGGACC 59.755 55.000 17.12 0.00 36.15 4.46
1562 1573 0.890683 CTGCAGGTTGATTTGGACCC 59.109 55.000 5.57 0.00 36.57 4.46
1563 1574 0.482446 TGCAGGTTGATTTGGACCCT 59.518 50.000 0.00 0.00 36.57 4.34
1567 1578 3.081804 CAGGTTGATTTGGACCCTACAC 58.918 50.000 0.00 0.00 36.57 2.90
1569 1580 2.551504 GGTTGATTTGGACCCTACACGT 60.552 50.000 0.00 0.00 0.00 4.49
1570 1581 3.306919 GGTTGATTTGGACCCTACACGTA 60.307 47.826 0.00 0.00 0.00 3.57
1571 1582 3.598019 TGATTTGGACCCTACACGTAC 57.402 47.619 0.00 0.00 0.00 3.67
1572 1583 2.094597 TGATTTGGACCCTACACGTACG 60.095 50.000 15.01 15.01 0.00 3.67
1573 1584 1.614996 TTTGGACCCTACACGTACGA 58.385 50.000 24.41 0.00 0.00 3.43
1574 1585 0.881118 TTGGACCCTACACGTACGAC 59.119 55.000 24.41 2.60 0.00 4.34
1576 1587 1.098050 GGACCCTACACGTACGACAT 58.902 55.000 24.41 9.05 0.00 3.06
1578 1589 0.813184 ACCCTACACGTACGACATGG 59.187 55.000 24.41 16.98 0.00 3.66
1580 1591 1.202222 CCCTACACGTACGACATGGAC 60.202 57.143 24.41 0.00 0.00 4.02
1581 1592 1.741706 CCTACACGTACGACATGGACT 59.258 52.381 24.41 0.00 0.00 3.85
1582 1593 2.477357 CCTACACGTACGACATGGACTG 60.477 54.545 24.41 9.52 0.00 3.51
1583 1594 1.241165 ACACGTACGACATGGACTGA 58.759 50.000 24.41 0.00 0.00 3.41
1584 1595 1.816835 ACACGTACGACATGGACTGAT 59.183 47.619 24.41 0.00 0.00 2.90
1586 1597 1.134367 ACGTACGACATGGACTGATGG 59.866 52.381 24.41 0.00 0.00 3.51
1587 1598 1.404035 CGTACGACATGGACTGATGGA 59.596 52.381 10.44 0.00 0.00 3.41
1589 1600 1.266178 ACGACATGGACTGATGGACA 58.734 50.000 0.00 0.00 0.00 4.02
1592 1603 1.945394 GACATGGACTGATGGACATGC 59.055 52.381 0.00 0.00 43.28 4.06
1593 1604 1.562942 ACATGGACTGATGGACATGCT 59.437 47.619 0.00 0.00 43.28 3.79
1597 1608 2.840038 TGGACTGATGGACATGCTAAGT 59.160 45.455 0.00 0.00 0.00 2.24
1598 1609 3.201290 GGACTGATGGACATGCTAAGTG 58.799 50.000 0.00 0.00 0.00 3.16
1600 1611 3.603532 ACTGATGGACATGCTAAGTGTG 58.396 45.455 0.00 0.00 0.00 3.82
1601 1612 3.261643 ACTGATGGACATGCTAAGTGTGA 59.738 43.478 0.00 0.00 0.00 3.58
1602 1613 4.256110 CTGATGGACATGCTAAGTGTGAA 58.744 43.478 0.00 0.00 0.00 3.18
1605 1616 3.402110 TGGACATGCTAAGTGTGAAGTG 58.598 45.455 0.00 0.00 0.00 3.16
1606 1617 3.070878 TGGACATGCTAAGTGTGAAGTGA 59.929 43.478 0.00 0.00 0.00 3.41
1607 1618 3.681897 GGACATGCTAAGTGTGAAGTGAG 59.318 47.826 0.00 0.00 0.00 3.51
1609 1620 4.960938 ACATGCTAAGTGTGAAGTGAGAA 58.039 39.130 0.00 0.00 0.00 2.87
1612 1623 5.991328 TGCTAAGTGTGAAGTGAGAAAAG 57.009 39.130 0.00 0.00 0.00 2.27
1613 1624 4.273480 TGCTAAGTGTGAAGTGAGAAAAGC 59.727 41.667 0.00 0.00 0.00 3.51
1618 1629 4.274459 AGTGTGAAGTGAGAAAAGCATCAC 59.726 41.667 0.00 0.00 44.97 3.06
1619 1630 4.035558 GTGTGAAGTGAGAAAAGCATCACA 59.964 41.667 7.94 0.00 46.63 3.58
1620 1631 4.823442 TGTGAAGTGAGAAAAGCATCACAT 59.177 37.500 7.94 0.00 46.63 3.21
2041 2076 1.364171 GGCGACGATCAGGCTGTAT 59.636 57.895 15.27 6.77 0.00 2.29
2292 2333 3.066814 GTACCTCTGCGACCCGGT 61.067 66.667 0.00 0.00 0.00 5.28
2332 2379 1.432270 GGAATGCCAGCAGCTACGTC 61.432 60.000 0.00 0.00 44.23 4.34
2395 2442 3.311110 GCCGAGTCCCTGGTGTCA 61.311 66.667 0.00 0.00 0.00 3.58
2488 2547 3.791887 CGACGAACTTATCTGCCAACTAG 59.208 47.826 0.00 0.00 0.00 2.57
2490 2549 4.495422 ACGAACTTATCTGCCAACTAGTG 58.505 43.478 0.00 0.00 0.00 2.74
2491 2550 4.021368 ACGAACTTATCTGCCAACTAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
2513 2602 8.408601 AGTGTCAATTAATGCTTCCAATATGTC 58.591 33.333 0.00 0.00 0.00 3.06
2520 2609 6.506538 AATGCTTCCAATATGTCTCCTACT 57.493 37.500 0.00 0.00 0.00 2.57
2521 2610 7.618019 AATGCTTCCAATATGTCTCCTACTA 57.382 36.000 0.00 0.00 0.00 1.82
2522 2611 6.406692 TGCTTCCAATATGTCTCCTACTAC 57.593 41.667 0.00 0.00 0.00 2.73
2534 2623 3.190744 TCTCCTACTACAAAGTGTGAGCG 59.809 47.826 0.00 0.00 35.90 5.03
2537 2626 1.784525 ACTACAAAGTGTGAGCGCTC 58.215 50.000 30.42 30.42 33.57 5.03
2636 3111 3.119779 AGCTCTCGCTTTCGGCTATATAC 60.120 47.826 0.00 0.00 46.47 1.47
2637 3112 3.760537 CTCTCGCTTTCGGCTATATACC 58.239 50.000 0.00 0.00 39.13 2.73
2638 3113 3.151554 TCTCGCTTTCGGCTATATACCA 58.848 45.455 0.00 0.00 39.13 3.25
2639 3114 3.057736 TCTCGCTTTCGGCTATATACCAC 60.058 47.826 0.00 0.00 39.13 4.16
2640 3115 2.889045 TCGCTTTCGGCTATATACCACT 59.111 45.455 0.00 0.00 39.13 4.00
2641 3116 3.319972 TCGCTTTCGGCTATATACCACTT 59.680 43.478 0.00 0.00 39.13 3.16
2644 3119 5.298347 GCTTTCGGCTATATACCACTTTCT 58.702 41.667 0.00 0.00 38.06 2.52
2646 3121 5.464030 TTCGGCTATATACCACTTTCTCC 57.536 43.478 0.00 0.00 0.00 3.71
2647 3122 4.737578 TCGGCTATATACCACTTTCTCCT 58.262 43.478 0.00 0.00 0.00 3.69
2649 3124 5.243283 TCGGCTATATACCACTTTCTCCTTC 59.757 44.000 0.00 0.00 0.00 3.46
2650 3125 5.567025 CGGCTATATACCACTTTCTCCTTCC 60.567 48.000 0.00 0.00 0.00 3.46
2653 3128 7.420330 GGCTATATACCACTTTCTCCTTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2654 3129 8.648693 GCTATATACCACTTTCTCCTTCCTTTA 58.351 37.037 0.00 0.00 0.00 1.85
2660 3135 7.849160 ACCACTTTCTCCTTCCTTTATAGTAC 58.151 38.462 0.00 0.00 0.00 2.73
2663 3138 9.892130 CACTTTCTCCTTCCTTTATAGTACAAT 57.108 33.333 0.00 0.00 0.00 2.71
2664 3139 9.892130 ACTTTCTCCTTCCTTTATAGTACAATG 57.108 33.333 0.00 0.00 0.00 2.82
2668 3143 9.483489 TCTCCTTCCTTTATAGTACAATGTGTA 57.517 33.333 0.00 0.00 0.00 2.90
2733 3208 3.721087 TTAGCCCCTCAAGAAGAAAGG 57.279 47.619 0.00 0.00 0.00 3.11
2734 3209 1.747444 AGCCCCTCAAGAAGAAAGGA 58.253 50.000 0.00 0.00 31.44 3.36
2735 3210 2.065799 AGCCCCTCAAGAAGAAAGGAA 58.934 47.619 0.00 0.00 31.44 3.36
2736 3211 2.447047 AGCCCCTCAAGAAGAAAGGAAA 59.553 45.455 0.00 0.00 31.44 3.13
2737 3212 3.117131 AGCCCCTCAAGAAGAAAGGAAAA 60.117 43.478 0.00 0.00 31.44 2.29
2738 3213 3.256879 GCCCCTCAAGAAGAAAGGAAAAG 59.743 47.826 0.00 0.00 31.44 2.27
2743 3218 8.055790 CCCCTCAAGAAGAAAGGAAAAGTATAT 58.944 37.037 0.00 0.00 31.44 0.86
2744 3219 9.114952 CCCTCAAGAAGAAAGGAAAAGTATATC 57.885 37.037 0.00 0.00 31.44 1.63
2772 3247 8.547481 TTCTAATTGTCTGTATCACTATCCCA 57.453 34.615 0.00 0.00 0.00 4.37
2773 3248 8.547481 TCTAATTGTCTGTATCACTATCCCAA 57.453 34.615 0.00 0.00 0.00 4.12
2774 3249 9.159254 TCTAATTGTCTGTATCACTATCCCAAT 57.841 33.333 0.00 0.00 0.00 3.16
2777 3252 9.479549 AATTGTCTGTATCACTATCCCAATTTT 57.520 29.630 0.00 0.00 28.60 1.82
2778 3253 8.506168 TTGTCTGTATCACTATCCCAATTTTC 57.494 34.615 0.00 0.00 0.00 2.29
2779 3254 6.761242 TGTCTGTATCACTATCCCAATTTTCG 59.239 38.462 0.00 0.00 0.00 3.46
2782 3257 7.070198 TCTGTATCACTATCCCAATTTTCGGTA 59.930 37.037 0.00 0.00 0.00 4.02
2783 3258 7.741785 TGTATCACTATCCCAATTTTCGGTAT 58.258 34.615 0.00 0.00 0.00 2.73
2784 3259 7.876068 TGTATCACTATCCCAATTTTCGGTATC 59.124 37.037 0.00 0.00 0.00 2.24
2786 3261 5.368523 TCACTATCCCAATTTTCGGTATCCT 59.631 40.000 0.00 0.00 0.00 3.24
2787 3262 6.062095 CACTATCCCAATTTTCGGTATCCTT 58.938 40.000 0.00 0.00 0.00 3.36
2788 3263 6.204882 CACTATCCCAATTTTCGGTATCCTTC 59.795 42.308 0.00 0.00 0.00 3.46
2789 3264 3.893521 TCCCAATTTTCGGTATCCTTCC 58.106 45.455 0.00 0.00 0.00 3.46
2790 3265 3.526019 TCCCAATTTTCGGTATCCTTCCT 59.474 43.478 0.00 0.00 0.00 3.36
2791 3266 4.017867 TCCCAATTTTCGGTATCCTTCCTT 60.018 41.667 0.00 0.00 0.00 3.36
2792 3267 4.709886 CCCAATTTTCGGTATCCTTCCTTT 59.290 41.667 0.00 0.00 0.00 3.11
2793 3268 5.163550 CCCAATTTTCGGTATCCTTCCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
2794 3269 5.163550 CCAATTTTCGGTATCCTTCCTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
2795 3270 4.921644 TTTTCGGTATCCTTCCTTTCCT 57.078 40.909 0.00 0.00 0.00 3.36
2796 3271 4.921644 TTTCGGTATCCTTCCTTTCCTT 57.078 40.909 0.00 0.00 0.00 3.36
2797 3272 3.906720 TCGGTATCCTTCCTTTCCTTG 57.093 47.619 0.00 0.00 0.00 3.61
2798 3273 2.093128 TCGGTATCCTTCCTTTCCTTGC 60.093 50.000 0.00 0.00 0.00 4.01
2799 3274 2.656002 GGTATCCTTCCTTTCCTTGCC 58.344 52.381 0.00 0.00 0.00 4.52
2800 3275 2.242452 GGTATCCTTCCTTTCCTTGCCT 59.758 50.000 0.00 0.00 0.00 4.75
2801 3276 3.458487 GGTATCCTTCCTTTCCTTGCCTA 59.542 47.826 0.00 0.00 0.00 3.93
2802 3277 4.079958 GGTATCCTTCCTTTCCTTGCCTAA 60.080 45.833 0.00 0.00 0.00 2.69
2803 3278 4.888626 ATCCTTCCTTTCCTTGCCTAAT 57.111 40.909 0.00 0.00 0.00 1.73
2804 3279 4.675063 TCCTTCCTTTCCTTGCCTAATT 57.325 40.909 0.00 0.00 0.00 1.40
2805 3280 4.344104 TCCTTCCTTTCCTTGCCTAATTG 58.656 43.478 0.00 0.00 0.00 2.32
2806 3281 4.044065 TCCTTCCTTTCCTTGCCTAATTGA 59.956 41.667 0.00 0.00 0.00 2.57
2807 3282 4.958581 CCTTCCTTTCCTTGCCTAATTGAT 59.041 41.667 0.00 0.00 0.00 2.57
2808 3283 5.423290 CCTTCCTTTCCTTGCCTAATTGATT 59.577 40.000 0.00 0.00 0.00 2.57
2809 3284 6.607198 CCTTCCTTTCCTTGCCTAATTGATTA 59.393 38.462 0.00 0.00 0.00 1.75
2810 3285 7.124147 CCTTCCTTTCCTTGCCTAATTGATTAA 59.876 37.037 0.00 0.00 0.00 1.40
2811 3286 8.608185 TTCCTTTCCTTGCCTAATTGATTAAT 57.392 30.769 0.00 0.00 0.00 1.40
2812 3287 8.608185 TCCTTTCCTTGCCTAATTGATTAATT 57.392 30.769 0.74 0.74 39.69 1.40
2813 3288 8.477256 TCCTTTCCTTGCCTAATTGATTAATTG 58.523 33.333 5.75 0.00 37.12 2.32
2814 3289 7.225341 CCTTTCCTTGCCTAATTGATTAATTGC 59.775 37.037 5.75 2.60 37.12 3.56
2815 3290 6.160576 TCCTTGCCTAATTGATTAATTGCC 57.839 37.500 5.75 0.00 37.12 4.52
2816 3291 4.984161 CCTTGCCTAATTGATTAATTGCCG 59.016 41.667 5.75 0.00 37.12 5.69
2817 3292 3.976169 TGCCTAATTGATTAATTGCCGC 58.024 40.909 5.75 5.13 37.12 6.53
2818 3293 3.243704 TGCCTAATTGATTAATTGCCGCC 60.244 43.478 5.75 0.00 37.12 6.13
2819 3294 3.243704 GCCTAATTGATTAATTGCCGCCA 60.244 43.478 5.75 0.00 37.12 5.69
2820 3295 4.739137 GCCTAATTGATTAATTGCCGCCAA 60.739 41.667 5.75 0.00 37.12 4.52
2821 3296 4.744631 CCTAATTGATTAATTGCCGCCAAC 59.255 41.667 5.75 0.00 37.12 3.77
2822 3297 2.663826 TTGATTAATTGCCGCCAACC 57.336 45.000 0.00 0.00 32.95 3.77
2823 3298 1.550327 TGATTAATTGCCGCCAACCA 58.450 45.000 0.00 0.00 32.95 3.67
2824 3299 1.895798 TGATTAATTGCCGCCAACCAA 59.104 42.857 0.00 0.00 32.95 3.67
2825 3300 2.267426 GATTAATTGCCGCCAACCAAC 58.733 47.619 0.00 0.00 32.95 3.77
2826 3301 0.039074 TTAATTGCCGCCAACCAACG 60.039 50.000 0.00 0.00 32.95 4.10
2827 3302 0.889638 TAATTGCCGCCAACCAACGA 60.890 50.000 0.00 0.00 32.95 3.85
2828 3303 1.739338 AATTGCCGCCAACCAACGAA 61.739 50.000 0.00 0.00 32.95 3.85
2829 3304 1.531739 ATTGCCGCCAACCAACGAAT 61.532 50.000 0.00 0.00 32.95 3.34
2830 3305 1.739338 TTGCCGCCAACCAACGAATT 61.739 50.000 0.00 0.00 0.00 2.17
2831 3306 0.889638 TGCCGCCAACCAACGAATTA 60.890 50.000 0.00 0.00 0.00 1.40
2832 3307 0.179174 GCCGCCAACCAACGAATTAG 60.179 55.000 0.00 0.00 0.00 1.73
2833 3308 0.179174 CCGCCAACCAACGAATTAGC 60.179 55.000 0.00 0.00 0.00 3.09
2834 3309 0.179174 CGCCAACCAACGAATTAGCC 60.179 55.000 0.00 0.00 0.00 3.93
2835 3310 0.885196 GCCAACCAACGAATTAGCCA 59.115 50.000 0.00 0.00 0.00 4.75
2836 3311 1.271102 GCCAACCAACGAATTAGCCAA 59.729 47.619 0.00 0.00 0.00 4.52
2837 3312 2.671070 GCCAACCAACGAATTAGCCAAG 60.671 50.000 0.00 0.00 0.00 3.61
2838 3313 2.094752 CCAACCAACGAATTAGCCAAGG 60.095 50.000 0.00 0.00 0.00 3.61
2839 3314 2.817258 CAACCAACGAATTAGCCAAGGA 59.183 45.455 0.00 0.00 0.00 3.36
2840 3315 3.366052 ACCAACGAATTAGCCAAGGAT 57.634 42.857 0.00 0.00 0.00 3.24
2841 3316 4.497291 ACCAACGAATTAGCCAAGGATA 57.503 40.909 0.00 0.00 0.00 2.59
2842 3317 4.850680 ACCAACGAATTAGCCAAGGATAA 58.149 39.130 0.00 0.00 0.00 1.75
2843 3318 5.445964 ACCAACGAATTAGCCAAGGATAAT 58.554 37.500 3.87 3.87 38.19 1.28
2844 3319 5.891551 ACCAACGAATTAGCCAAGGATAATT 59.108 36.000 19.12 19.12 45.57 1.40
2845 3320 6.379988 ACCAACGAATTAGCCAAGGATAATTT 59.620 34.615 19.79 6.13 43.78 1.82
2846 3321 7.093509 ACCAACGAATTAGCCAAGGATAATTTT 60.094 33.333 19.79 10.90 43.78 1.82
2847 3322 7.222611 CCAACGAATTAGCCAAGGATAATTTTG 59.777 37.037 19.79 19.02 43.78 2.44
2848 3323 7.404671 ACGAATTAGCCAAGGATAATTTTGT 57.595 32.000 19.79 17.82 43.78 2.83
2849 3324 7.480810 ACGAATTAGCCAAGGATAATTTTGTC 58.519 34.615 19.79 9.25 43.78 3.18
2850 3325 6.918022 CGAATTAGCCAAGGATAATTTTGTCC 59.082 38.462 19.79 8.81 43.78 4.02
2852 3327 7.588497 ATTAGCCAAGGATAATTTTGTCCTC 57.412 36.000 8.80 0.00 46.53 3.71
2853 3328 4.934356 AGCCAAGGATAATTTTGTCCTCA 58.066 39.130 8.80 0.00 46.53 3.86
2854 3329 5.522641 AGCCAAGGATAATTTTGTCCTCAT 58.477 37.500 8.80 0.00 46.53 2.90
2855 3330 5.960202 AGCCAAGGATAATTTTGTCCTCATT 59.040 36.000 8.80 0.00 46.53 2.57
2856 3331 6.441604 AGCCAAGGATAATTTTGTCCTCATTT 59.558 34.615 8.80 0.00 46.53 2.32
2857 3332 6.758416 GCCAAGGATAATTTTGTCCTCATTTC 59.242 38.462 8.80 0.00 46.53 2.17
2858 3333 7.364144 GCCAAGGATAATTTTGTCCTCATTTCT 60.364 37.037 8.80 0.00 46.53 2.52
2859 3334 8.193438 CCAAGGATAATTTTGTCCTCATTTCTC 58.807 37.037 8.80 0.00 46.53 2.87
2860 3335 8.964772 CAAGGATAATTTTGTCCTCATTTCTCT 58.035 33.333 8.80 0.00 46.53 3.10
2872 3347 8.677300 TGTCCTCATTTCTCTATAATTTTGTGC 58.323 33.333 0.00 0.00 0.00 4.57
2873 3348 8.131731 GTCCTCATTTCTCTATAATTTTGTGCC 58.868 37.037 0.00 0.00 0.00 5.01
2874 3349 7.285401 TCCTCATTTCTCTATAATTTTGTGCCC 59.715 37.037 0.00 0.00 0.00 5.36
2875 3350 7.286316 CCTCATTTCTCTATAATTTTGTGCCCT 59.714 37.037 0.00 0.00 0.00 5.19
2876 3351 7.999679 TCATTTCTCTATAATTTTGTGCCCTG 58.000 34.615 0.00 0.00 0.00 4.45
2877 3352 7.833682 TCATTTCTCTATAATTTTGTGCCCTGA 59.166 33.333 0.00 0.00 0.00 3.86
2878 3353 8.636213 CATTTCTCTATAATTTTGTGCCCTGAT 58.364 33.333 0.00 0.00 0.00 2.90
2879 3354 7.807977 TTCTCTATAATTTTGTGCCCTGATC 57.192 36.000 0.00 0.00 0.00 2.92
2880 3355 6.899089 TCTCTATAATTTTGTGCCCTGATCA 58.101 36.000 0.00 0.00 0.00 2.92
2881 3356 7.520798 TCTCTATAATTTTGTGCCCTGATCAT 58.479 34.615 0.00 0.00 0.00 2.45
2882 3357 7.663081 TCTCTATAATTTTGTGCCCTGATCATC 59.337 37.037 0.00 0.00 0.00 2.92
2883 3358 7.289310 TCTATAATTTTGTGCCCTGATCATCA 58.711 34.615 0.00 0.00 0.00 3.07
2884 3359 6.989155 ATAATTTTGTGCCCTGATCATCAT 57.011 33.333 0.00 0.00 0.00 2.45
2885 3360 4.665833 ATTTTGTGCCCTGATCATCATG 57.334 40.909 0.00 0.00 0.00 3.07
2886 3361 1.395635 TTGTGCCCTGATCATCATGC 58.604 50.000 0.00 2.95 0.00 4.06
2887 3362 0.466739 TGTGCCCTGATCATCATGCC 60.467 55.000 0.00 0.79 0.00 4.40
2888 3363 0.466739 GTGCCCTGATCATCATGCCA 60.467 55.000 0.00 0.00 0.00 4.92
2889 3364 0.259356 TGCCCTGATCATCATGCCAA 59.741 50.000 0.00 0.00 0.00 4.52
2890 3365 1.342175 TGCCCTGATCATCATGCCAAA 60.342 47.619 0.00 0.00 0.00 3.28
2891 3366 1.758280 GCCCTGATCATCATGCCAAAA 59.242 47.619 0.00 0.00 0.00 2.44
2892 3367 2.168936 GCCCTGATCATCATGCCAAAAA 59.831 45.455 0.00 0.00 0.00 1.94
2928 3403 8.050316 ACATAAAGGAATGGAATGGATAGAGT 57.950 34.615 0.00 0.00 0.00 3.24
2929 3404 9.170890 ACATAAAGGAATGGAATGGATAGAGTA 57.829 33.333 0.00 0.00 0.00 2.59
2930 3405 9.664332 CATAAAGGAATGGAATGGATAGAGTAG 57.336 37.037 0.00 0.00 0.00 2.57
2931 3406 6.694445 AAGGAATGGAATGGATAGAGTAGG 57.306 41.667 0.00 0.00 0.00 3.18
2932 3407 5.982391 AGGAATGGAATGGATAGAGTAGGA 58.018 41.667 0.00 0.00 0.00 2.94
2933 3408 5.782845 AGGAATGGAATGGATAGAGTAGGAC 59.217 44.000 0.00 0.00 0.00 3.85
2934 3409 5.544176 GGAATGGAATGGATAGAGTAGGACA 59.456 44.000 0.00 0.00 0.00 4.02
2939 3414 5.390387 GAATGGATAGAGTAGGACAGAGGT 58.610 45.833 0.00 0.00 0.00 3.85
2952 4867 4.593634 AGGACAGAGGTAGTAGCTTTTTGT 59.406 41.667 2.85 8.70 0.00 2.83
2954 4869 5.279556 GGACAGAGGTAGTAGCTTTTTGTCT 60.280 44.000 25.20 10.01 34.88 3.41
2961 4876 4.439253 AGTAGCTTTTTGTCTGGGAACT 57.561 40.909 0.00 0.00 0.00 3.01
2964 4879 5.763698 AGTAGCTTTTTGTCTGGGAACTAAC 59.236 40.000 0.00 0.00 0.00 2.34
2975 4890 4.838986 TCTGGGAACTAACTGTTTAGCTCT 59.161 41.667 0.00 0.00 38.71 4.09
2976 4891 5.047235 TCTGGGAACTAACTGTTTAGCTCTC 60.047 44.000 0.00 0.00 38.71 3.20
2977 4892 4.838986 TGGGAACTAACTGTTTAGCTCTCT 59.161 41.667 0.00 0.00 38.71 3.10
3000 4915 1.799544 CATGGTTGCCTTTTGCTTCC 58.200 50.000 0.00 0.00 42.00 3.46
3002 4917 1.494960 TGGTTGCCTTTTGCTTCCTT 58.505 45.000 0.00 0.00 42.00 3.36
3006 4921 1.120795 TGCCTTTTGCTTCCTTGGGG 61.121 55.000 0.00 0.00 42.00 4.96
3031 4946 7.973944 GGAAAACTAGTATGCGATTTTGGATTT 59.026 33.333 0.00 0.00 0.00 2.17
3094 5016 3.265737 TGTAAGGGATGTGTAGTTGCCAT 59.734 43.478 0.00 0.00 0.00 4.40
3098 5696 3.511146 AGGGATGTGTAGTTGCCATTTTG 59.489 43.478 0.00 0.00 0.00 2.44
3104 5702 5.105752 TGTGTAGTTGCCATTTTGTCAAAC 58.894 37.500 0.00 0.00 0.00 2.93
3153 5751 1.302192 GGTCCAAGCAACGGCAGTA 60.302 57.895 0.00 0.00 44.61 2.74
3158 5756 1.400494 CCAAGCAACGGCAGTATAACC 59.600 52.381 0.00 0.00 44.61 2.85
3159 5757 2.080693 CAAGCAACGGCAGTATAACCA 58.919 47.619 0.00 0.00 44.61 3.67
3181 5779 7.115414 ACCAAAAATCAACAGAAAATTTCCCA 58.885 30.769 1.57 0.00 0.00 4.37
3208 5806 1.151668 CAGTAGTGTGGCTCTTGCAC 58.848 55.000 0.00 0.00 41.91 4.57
3209 5807 0.758734 AGTAGTGTGGCTCTTGCACA 59.241 50.000 0.00 0.00 41.91 4.57
3211 5809 1.532868 GTAGTGTGGCTCTTGCACAAG 59.467 52.381 3.94 3.94 41.91 3.16
3212 5810 0.107017 AGTGTGGCTCTTGCACAAGT 60.107 50.000 10.05 0.00 41.91 3.16
3213 5811 1.140852 AGTGTGGCTCTTGCACAAGTA 59.859 47.619 10.05 0.00 41.91 2.24
3265 5863 3.250744 TCTCATACGCCGAGAAACAAAG 58.749 45.455 0.00 0.00 36.59 2.77
3267 5865 2.028839 TCATACGCCGAGAAACAAAGGA 60.029 45.455 0.00 0.00 0.00 3.36
3284 5882 8.871686 AACAAAGGACAAACTTTAGCAAATAG 57.128 30.769 0.00 0.00 38.56 1.73
3303 5901 1.499007 AGCCCATAATCCGAAACCCAT 59.501 47.619 0.00 0.00 0.00 4.00
3313 5914 3.101437 TCCGAAACCCATAGTGCTCTTA 58.899 45.455 0.00 0.00 0.00 2.10
3314 5915 3.516300 TCCGAAACCCATAGTGCTCTTAA 59.484 43.478 0.00 0.00 0.00 1.85
3317 5918 5.007724 CCGAAACCCATAGTGCTCTTAATTC 59.992 44.000 0.00 0.00 0.00 2.17
3350 5974 8.472007 AACATTGGTAGGAGTGAAATAACAAA 57.528 30.769 0.00 0.00 30.45 2.83
3365 5989 0.106419 ACAAAGTTTGGCCGAGGGAA 60.106 50.000 19.45 0.00 34.12 3.97
3415 6041 8.926715 AAAAAGAAAAACGAGCTCAATTAACT 57.073 26.923 15.40 7.77 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 2.877168 GGATTGTTTTGCCATGCACAAA 59.123 40.909 7.75 7.75 38.71 2.83
190 191 7.446769 TGTAGTAGCTGATCAAAAAGGTACAA 58.553 34.615 18.59 6.47 45.49 2.41
194 195 6.204882 GTGTTGTAGTAGCTGATCAAAAAGGT 59.795 38.462 0.00 0.00 0.00 3.50
231 232 0.538584 TTCATCTGCCGATGCTGAGT 59.461 50.000 12.85 0.00 46.72 3.41
247 248 6.019748 TGGGGCTTTACCTTTGATTATTTCA 58.980 36.000 0.00 0.00 39.10 2.69
356 357 1.369091 CCATCAGTAGCCAACGCCAC 61.369 60.000 0.00 0.00 34.57 5.01
376 377 7.095271 GCTGAGCCATCTGAAGAATTATAAGAC 60.095 40.741 0.00 0.00 0.00 3.01
382 383 4.449131 CAGCTGAGCCATCTGAAGAATTA 58.551 43.478 8.42 0.00 30.23 1.40
400 401 2.172293 GAGGATCATTCCAGAACCAGCT 59.828 50.000 0.00 0.00 45.30 4.24
403 404 1.486310 CGGAGGATCATTCCAGAACCA 59.514 52.381 13.93 0.00 45.30 3.67
563 564 0.531974 GTGCCACCGAACAGTCTGAA 60.532 55.000 6.91 0.00 0.00 3.02
664 665 8.803235 GGAGAATTTTAACAGGAATAACAACCT 58.197 33.333 0.00 0.00 36.92 3.50
879 880 2.698797 TCTATTGCTGGTAGCCTGGTAC 59.301 50.000 0.00 0.00 41.51 3.34
880 881 2.965831 CTCTATTGCTGGTAGCCTGGTA 59.034 50.000 0.00 0.00 41.51 3.25
882 883 2.042464 TCTCTATTGCTGGTAGCCTGG 58.958 52.381 0.00 0.00 41.51 4.45
884 885 3.508012 CGTATCTCTATTGCTGGTAGCCT 59.492 47.826 0.00 0.00 41.51 4.58
885 886 3.367498 CCGTATCTCTATTGCTGGTAGCC 60.367 52.174 0.00 0.00 41.51 3.93
886 887 3.506455 TCCGTATCTCTATTGCTGGTAGC 59.494 47.826 0.00 0.00 42.82 3.58
887 888 4.762765 AGTCCGTATCTCTATTGCTGGTAG 59.237 45.833 0.00 0.00 0.00 3.18
1051 1052 2.641815 AGAGGAGAAGAAACAGTGCCAT 59.358 45.455 0.00 0.00 0.00 4.40
1061 1062 2.052690 CCGCCGGAGAGGAGAAGAA 61.053 63.158 5.05 0.00 43.02 2.52
1101 1102 2.490217 CCGAACGAGATCACCGCT 59.510 61.111 7.33 0.00 0.00 5.52
1266 1267 3.913763 GTGCATGTAAGTGTAACGACGTA 59.086 43.478 0.00 0.00 45.86 3.57
1303 1304 1.953559 TTGAGTGTCAGTTGCAGGAC 58.046 50.000 7.94 7.94 34.63 3.85
1325 1326 9.618890 ACCGAGTATAACTACAAGTTCATACTA 57.381 33.333 14.72 0.00 39.51 1.82
1326 1327 8.404000 CACCGAGTATAACTACAAGTTCATACT 58.596 37.037 14.69 14.69 39.51 2.12
1327 1328 8.186821 ACACCGAGTATAACTACAAGTTCATAC 58.813 37.037 0.00 4.23 39.51 2.39
1329 1330 7.033791 CACACCGAGTATAACTACAAGTTCAT 58.966 38.462 0.00 0.00 39.51 2.57
1330 1331 6.016024 ACACACCGAGTATAACTACAAGTTCA 60.016 38.462 0.00 0.00 39.51 3.18
1331 1332 6.385033 ACACACCGAGTATAACTACAAGTTC 58.615 40.000 0.00 0.00 39.51 3.01
1332 1333 6.336842 ACACACCGAGTATAACTACAAGTT 57.663 37.500 0.00 0.00 41.97 2.66
1333 1334 5.972107 ACACACCGAGTATAACTACAAGT 57.028 39.130 0.00 0.00 0.00 3.16
1334 1335 6.467047 CGTTACACACCGAGTATAACTACAAG 59.533 42.308 7.29 0.00 0.00 3.16
1337 1342 5.734498 CACGTTACACACCGAGTATAACTAC 59.266 44.000 7.29 0.00 0.00 2.73
1428 1437 2.920912 TTCTTCCCCGACGCCAGT 60.921 61.111 0.00 0.00 0.00 4.00
1525 1536 5.873712 CCTGCAGCTTGTATGAAGATATAGG 59.126 44.000 8.66 0.00 0.00 2.57
1527 1538 6.425210 ACCTGCAGCTTGTATGAAGATATA 57.575 37.500 8.66 0.00 0.00 0.86
1529 1540 4.760530 ACCTGCAGCTTGTATGAAGATA 57.239 40.909 8.66 0.00 0.00 1.98
1537 1548 2.557924 CCAAATCAACCTGCAGCTTGTA 59.442 45.455 18.86 8.48 0.00 2.41
1539 1550 1.614903 TCCAAATCAACCTGCAGCTTG 59.385 47.619 14.50 14.50 0.00 4.01
1540 1551 1.615392 GTCCAAATCAACCTGCAGCTT 59.385 47.619 8.66 0.00 0.00 3.74
1541 1552 1.251251 GTCCAAATCAACCTGCAGCT 58.749 50.000 8.66 0.00 0.00 4.24
1542 1553 0.244721 GGTCCAAATCAACCTGCAGC 59.755 55.000 8.66 0.00 32.54 5.25
1543 1554 0.890683 GGGTCCAAATCAACCTGCAG 59.109 55.000 6.78 6.78 35.78 4.41
1544 1555 0.482446 AGGGTCCAAATCAACCTGCA 59.518 50.000 0.00 0.00 35.78 4.41
1549 1560 2.774687 ACGTGTAGGGTCCAAATCAAC 58.225 47.619 0.00 0.00 0.00 3.18
1553 1564 2.094545 GTCGTACGTGTAGGGTCCAAAT 60.095 50.000 16.05 0.00 0.00 2.32
1561 1572 1.741706 AGTCCATGTCGTACGTGTAGG 59.258 52.381 16.05 13.26 33.37 3.18
1562 1573 2.417586 TCAGTCCATGTCGTACGTGTAG 59.582 50.000 16.05 4.49 33.37 2.74
1563 1574 2.425539 TCAGTCCATGTCGTACGTGTA 58.574 47.619 16.05 3.25 33.37 2.90
1567 1578 1.404035 TCCATCAGTCCATGTCGTACG 59.596 52.381 9.53 9.53 0.00 3.67
1569 1580 2.452505 TGTCCATCAGTCCATGTCGTA 58.547 47.619 0.00 0.00 0.00 3.43
1570 1581 1.266178 TGTCCATCAGTCCATGTCGT 58.734 50.000 0.00 0.00 0.00 4.34
1571 1582 2.207590 CATGTCCATCAGTCCATGTCG 58.792 52.381 0.00 0.00 32.08 4.35
1572 1583 1.945394 GCATGTCCATCAGTCCATGTC 59.055 52.381 0.00 0.00 37.57 3.06
1573 1584 1.562942 AGCATGTCCATCAGTCCATGT 59.437 47.619 0.00 0.00 37.57 3.21
1574 1585 2.343484 AGCATGTCCATCAGTCCATG 57.657 50.000 0.00 0.00 38.14 3.66
1576 1587 2.840038 ACTTAGCATGTCCATCAGTCCA 59.160 45.455 0.00 0.00 0.00 4.02
1578 1589 3.620374 CACACTTAGCATGTCCATCAGTC 59.380 47.826 0.00 0.00 0.00 3.51
1580 1591 3.865446 TCACACTTAGCATGTCCATCAG 58.135 45.455 0.00 0.00 0.00 2.90
1581 1592 3.979101 TCACACTTAGCATGTCCATCA 57.021 42.857 0.00 0.00 0.00 3.07
1582 1593 4.093998 CACTTCACACTTAGCATGTCCATC 59.906 45.833 0.00 0.00 0.00 3.51
1583 1594 4.005650 CACTTCACACTTAGCATGTCCAT 58.994 43.478 0.00 0.00 0.00 3.41
1584 1595 3.070878 TCACTTCACACTTAGCATGTCCA 59.929 43.478 0.00 0.00 0.00 4.02
1586 1597 4.560128 TCTCACTTCACACTTAGCATGTC 58.440 43.478 0.00 0.00 0.00 3.06
1587 1598 4.607293 TCTCACTTCACACTTAGCATGT 57.393 40.909 0.00 0.00 0.00 3.21
1589 1600 5.049129 GCTTTTCTCACTTCACACTTAGCAT 60.049 40.000 0.00 0.00 0.00 3.79
1592 1603 5.991328 TGCTTTTCTCACTTCACACTTAG 57.009 39.130 0.00 0.00 0.00 2.18
1593 1604 6.017934 GTGATGCTTTTCTCACTTCACACTTA 60.018 38.462 0.00 0.00 38.94 2.24
1597 1608 4.198530 TGTGATGCTTTTCTCACTTCACA 58.801 39.130 6.80 6.80 42.61 3.58
1598 1609 4.818534 TGTGATGCTTTTCTCACTTCAC 57.181 40.909 4.53 0.00 41.83 3.18
1618 1629 6.986231 TCCTACAGATAAATACACACAGCATG 59.014 38.462 0.00 0.00 46.00 4.06
1619 1630 7.124573 TCCTACAGATAAATACACACAGCAT 57.875 36.000 0.00 0.00 0.00 3.79
1620 1631 6.538945 TCCTACAGATAAATACACACAGCA 57.461 37.500 0.00 0.00 0.00 4.41
1654 1669 0.033366 TACTTGAGCTGCTGCGACAA 59.967 50.000 21.56 21.56 45.42 3.18
1899 1914 4.303282 CAGAGAGAGATGCTGTGATGATG 58.697 47.826 0.00 0.00 0.00 3.07
1900 1915 3.243941 GCAGAGAGAGATGCTGTGATGAT 60.244 47.826 0.00 0.00 39.38 2.45
1901 1916 2.101082 GCAGAGAGAGATGCTGTGATGA 59.899 50.000 0.00 0.00 39.38 2.92
1943 1978 2.174210 ACAGCTCCTGCAATATGTCCAT 59.826 45.455 0.00 0.00 42.74 3.41
2086 2127 1.737008 GTTGAAGGTCTCGGCGTCC 60.737 63.158 6.85 8.56 0.00 4.79
2317 2364 0.965866 AGTAGACGTAGCTGCTGGCA 60.966 55.000 13.43 0.00 44.79 4.92
2332 2379 2.126618 TGCACGCCGTCGAAGTAG 60.127 61.111 0.00 0.00 39.41 2.57
2375 2422 3.461773 CACCAGGGACTCGGCGAT 61.462 66.667 11.27 0.00 34.60 4.58
2488 2547 8.408601 AGACATATTGGAAGCATTAATTGACAC 58.591 33.333 0.00 0.00 0.00 3.67
2490 2549 8.078596 GGAGACATATTGGAAGCATTAATTGAC 58.921 37.037 0.00 0.00 0.00 3.18
2491 2550 8.000709 AGGAGACATATTGGAAGCATTAATTGA 58.999 33.333 0.00 0.00 0.00 2.57
2513 2602 3.502920 CGCTCACACTTTGTAGTAGGAG 58.497 50.000 0.00 0.00 37.06 3.69
2520 2609 0.031585 ACGAGCGCTCACACTTTGTA 59.968 50.000 34.69 0.00 0.00 2.41
2521 2610 0.810031 AACGAGCGCTCACACTTTGT 60.810 50.000 34.69 20.38 0.00 2.83
2522 2611 0.383491 CAACGAGCGCTCACACTTTG 60.383 55.000 34.69 23.11 0.00 2.77
2534 2623 5.006746 ACAAATTACATAGCTAGCAACGAGC 59.993 40.000 18.83 0.00 46.19 5.03
2537 2626 5.231357 TCGACAAATTACATAGCTAGCAACG 59.769 40.000 18.83 6.62 0.00 4.10
2627 3102 5.544562 AGGAAGGAGAAAGTGGTATATAGCC 59.455 44.000 9.38 2.49 0.00 3.93
2636 3111 7.848128 TGTACTATAAAGGAAGGAGAAAGTGG 58.152 38.462 0.00 0.00 0.00 4.00
2637 3112 9.892130 ATTGTACTATAAAGGAAGGAGAAAGTG 57.108 33.333 0.00 0.00 0.00 3.16
2638 3113 9.892130 CATTGTACTATAAAGGAAGGAGAAAGT 57.108 33.333 0.00 0.00 0.00 2.66
2639 3114 9.892130 ACATTGTACTATAAAGGAAGGAGAAAG 57.108 33.333 0.00 0.00 0.00 2.62
2640 3115 9.667107 CACATTGTACTATAAAGGAAGGAGAAA 57.333 33.333 0.00 0.00 0.00 2.52
2641 3116 8.822805 ACACATTGTACTATAAAGGAAGGAGAA 58.177 33.333 0.00 0.00 0.00 2.87
2710 3185 4.832823 CCTTTCTTCTTGAGGGGCTAAAAA 59.167 41.667 0.00 0.00 0.00 1.94
2711 3186 4.105697 TCCTTTCTTCTTGAGGGGCTAAAA 59.894 41.667 0.00 0.00 0.00 1.52
2712 3187 3.655777 TCCTTTCTTCTTGAGGGGCTAAA 59.344 43.478 0.00 0.00 0.00 1.85
2714 3189 2.915869 TCCTTTCTTCTTGAGGGGCTA 58.084 47.619 0.00 0.00 0.00 3.93
2716 3191 2.586648 TTCCTTTCTTCTTGAGGGGC 57.413 50.000 0.00 0.00 0.00 5.80
2718 3193 9.114952 GATATACTTTTCCTTTCTTCTTGAGGG 57.885 37.037 0.00 0.00 0.00 4.30
2719 3194 9.898152 AGATATACTTTTCCTTTCTTCTTGAGG 57.102 33.333 0.00 0.00 0.00 3.86
2746 3221 9.159254 TGGGATAGTGATACAGACAATTAGAAT 57.841 33.333 0.00 0.00 0.00 2.40
2748 3223 8.547481 TTGGGATAGTGATACAGACAATTAGA 57.453 34.615 0.00 0.00 0.00 2.10
2749 3224 9.784531 AATTGGGATAGTGATACAGACAATTAG 57.215 33.333 0.00 0.00 35.14 1.73
2751 3226 9.479549 AAAATTGGGATAGTGATACAGACAATT 57.520 29.630 0.00 0.00 37.54 2.32
2752 3227 9.125026 GAAAATTGGGATAGTGATACAGACAAT 57.875 33.333 0.00 0.00 0.00 2.71
2753 3228 7.279981 CGAAAATTGGGATAGTGATACAGACAA 59.720 37.037 0.00 0.00 0.00 3.18
2754 3229 6.761242 CGAAAATTGGGATAGTGATACAGACA 59.239 38.462 0.00 0.00 0.00 3.41
2755 3230 6.202954 CCGAAAATTGGGATAGTGATACAGAC 59.797 42.308 0.00 0.00 0.00 3.51
2756 3231 6.126883 ACCGAAAATTGGGATAGTGATACAGA 60.127 38.462 0.89 0.00 0.00 3.41
2757 3232 6.055588 ACCGAAAATTGGGATAGTGATACAG 58.944 40.000 0.89 0.00 0.00 2.74
2758 3233 5.996644 ACCGAAAATTGGGATAGTGATACA 58.003 37.500 0.89 0.00 0.00 2.29
2759 3234 7.333672 GGATACCGAAAATTGGGATAGTGATAC 59.666 40.741 0.89 0.00 27.01 2.24
2760 3235 7.236847 AGGATACCGAAAATTGGGATAGTGATA 59.763 37.037 0.89 0.00 27.01 2.15
2763 3238 5.621193 AGGATACCGAAAATTGGGATAGTG 58.379 41.667 0.89 0.00 27.01 2.74
2765 3240 5.705905 GGAAGGATACCGAAAATTGGGATAG 59.294 44.000 0.89 0.00 27.01 2.08
2766 3241 5.371472 AGGAAGGATACCGAAAATTGGGATA 59.629 40.000 0.89 0.00 27.01 2.59
2768 3243 3.526019 AGGAAGGATACCGAAAATTGGGA 59.474 43.478 0.89 0.00 37.17 4.37
2769 3244 3.898482 AGGAAGGATACCGAAAATTGGG 58.102 45.455 0.00 0.00 37.17 4.12
2770 3245 5.163550 GGAAAGGAAGGATACCGAAAATTGG 60.164 44.000 0.00 0.00 37.17 3.16
2772 3247 5.827756 AGGAAAGGAAGGATACCGAAAATT 58.172 37.500 0.00 0.00 37.17 1.82
2773 3248 5.452341 AGGAAAGGAAGGATACCGAAAAT 57.548 39.130 0.00 0.00 37.17 1.82
2774 3249 4.921644 AGGAAAGGAAGGATACCGAAAA 57.078 40.909 0.00 0.00 37.17 2.29
2776 3251 3.621461 GCAAGGAAAGGAAGGATACCGAA 60.621 47.826 0.00 0.00 37.17 4.30
2777 3252 2.093128 GCAAGGAAAGGAAGGATACCGA 60.093 50.000 0.00 0.00 37.17 4.69
2778 3253 2.289565 GCAAGGAAAGGAAGGATACCG 58.710 52.381 0.00 0.00 37.17 4.02
2779 3254 2.242452 AGGCAAGGAAAGGAAGGATACC 59.758 50.000 0.00 0.00 37.17 2.73
2782 3257 4.888626 ATTAGGCAAGGAAAGGAAGGAT 57.111 40.909 0.00 0.00 0.00 3.24
2783 3258 4.044065 TCAATTAGGCAAGGAAAGGAAGGA 59.956 41.667 0.00 0.00 0.00 3.36
2784 3259 4.344104 TCAATTAGGCAAGGAAAGGAAGG 58.656 43.478 0.00 0.00 0.00 3.46
2786 3261 8.608185 ATTAATCAATTAGGCAAGGAAAGGAA 57.392 30.769 0.00 0.00 0.00 3.36
2787 3262 8.477256 CAATTAATCAATTAGGCAAGGAAAGGA 58.523 33.333 0.00 0.00 32.96 3.36
2788 3263 7.225341 GCAATTAATCAATTAGGCAAGGAAAGG 59.775 37.037 0.00 0.00 32.96 3.11
2789 3264 7.225341 GGCAATTAATCAATTAGGCAAGGAAAG 59.775 37.037 0.00 0.00 32.96 2.62
2790 3265 7.047271 GGCAATTAATCAATTAGGCAAGGAAA 58.953 34.615 0.00 0.00 32.96 3.13
2791 3266 6.581712 GGCAATTAATCAATTAGGCAAGGAA 58.418 36.000 0.00 0.00 32.96 3.36
2792 3267 5.221224 CGGCAATTAATCAATTAGGCAAGGA 60.221 40.000 0.00 0.00 32.96 3.36
2793 3268 4.984161 CGGCAATTAATCAATTAGGCAAGG 59.016 41.667 0.00 0.00 32.96 3.61
2794 3269 4.445385 GCGGCAATTAATCAATTAGGCAAG 59.555 41.667 0.00 0.00 32.96 4.01
2795 3270 4.367450 GCGGCAATTAATCAATTAGGCAA 58.633 39.130 0.00 0.00 32.96 4.52
2796 3271 3.243704 GGCGGCAATTAATCAATTAGGCA 60.244 43.478 3.07 0.00 32.96 4.75
2797 3272 3.243704 TGGCGGCAATTAATCAATTAGGC 60.244 43.478 10.22 0.00 32.96 3.93
2798 3273 4.582701 TGGCGGCAATTAATCAATTAGG 57.417 40.909 10.22 0.00 32.96 2.69
2799 3274 4.744631 GGTTGGCGGCAATTAATCAATTAG 59.255 41.667 28.07 0.00 32.96 1.73
2800 3275 4.160439 TGGTTGGCGGCAATTAATCAATTA 59.840 37.500 28.07 0.00 32.96 1.40
2801 3276 3.055530 TGGTTGGCGGCAATTAATCAATT 60.056 39.130 28.07 0.00 34.60 2.32
2802 3277 2.499289 TGGTTGGCGGCAATTAATCAAT 59.501 40.909 28.07 0.00 0.00 2.57
2803 3278 1.895798 TGGTTGGCGGCAATTAATCAA 59.104 42.857 28.07 4.86 0.00 2.57
2804 3279 1.550327 TGGTTGGCGGCAATTAATCA 58.450 45.000 28.07 16.80 0.00 2.57
2805 3280 2.267426 GTTGGTTGGCGGCAATTAATC 58.733 47.619 28.07 13.93 0.00 1.75
2806 3281 1.403514 CGTTGGTTGGCGGCAATTAAT 60.404 47.619 28.07 0.00 0.00 1.40
2807 3282 0.039074 CGTTGGTTGGCGGCAATTAA 60.039 50.000 28.07 21.06 0.00 1.40
2808 3283 0.889638 TCGTTGGTTGGCGGCAATTA 60.890 50.000 28.07 16.45 0.00 1.40
2809 3284 1.739338 TTCGTTGGTTGGCGGCAATT 61.739 50.000 28.07 0.00 0.00 2.32
2810 3285 1.531739 ATTCGTTGGTTGGCGGCAAT 61.532 50.000 28.07 5.98 0.00 3.56
2811 3286 1.739338 AATTCGTTGGTTGGCGGCAA 61.739 50.000 21.79 21.79 0.00 4.52
2812 3287 0.889638 TAATTCGTTGGTTGGCGGCA 60.890 50.000 7.97 7.97 0.00 5.69
2813 3288 0.179174 CTAATTCGTTGGTTGGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
2814 3289 0.179174 GCTAATTCGTTGGTTGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
2815 3290 0.179174 GGCTAATTCGTTGGTTGGCG 60.179 55.000 0.00 0.00 33.25 5.69
2816 3291 0.885196 TGGCTAATTCGTTGGTTGGC 59.115 50.000 0.00 0.00 0.00 4.52
2817 3292 2.094752 CCTTGGCTAATTCGTTGGTTGG 60.095 50.000 0.00 0.00 0.00 3.77
2818 3293 2.817258 TCCTTGGCTAATTCGTTGGTTG 59.183 45.455 0.00 0.00 0.00 3.77
2819 3294 3.149005 TCCTTGGCTAATTCGTTGGTT 57.851 42.857 0.00 0.00 0.00 3.67
2820 3295 2.871096 TCCTTGGCTAATTCGTTGGT 57.129 45.000 0.00 0.00 0.00 3.67
2821 3296 6.391227 AATTATCCTTGGCTAATTCGTTGG 57.609 37.500 3.47 0.00 0.00 3.77
2822 3297 7.759433 ACAAAATTATCCTTGGCTAATTCGTTG 59.241 33.333 8.40 11.28 29.54 4.10
2823 3298 7.836842 ACAAAATTATCCTTGGCTAATTCGTT 58.163 30.769 8.40 0.31 29.54 3.85
2824 3299 7.404671 ACAAAATTATCCTTGGCTAATTCGT 57.595 32.000 8.40 6.92 29.54 3.85
2825 3300 6.918022 GGACAAAATTATCCTTGGCTAATTCG 59.082 38.462 8.40 6.46 30.82 3.34
2826 3301 8.011844 AGGACAAAATTATCCTTGGCTAATTC 57.988 34.615 8.40 0.00 43.09 2.17
2827 3302 7.619302 TGAGGACAAAATTATCCTTGGCTAATT 59.381 33.333 7.15 3.47 45.74 1.40
2828 3303 7.125391 TGAGGACAAAATTATCCTTGGCTAAT 58.875 34.615 7.15 0.00 45.74 1.73
2829 3304 6.489603 TGAGGACAAAATTATCCTTGGCTAA 58.510 36.000 7.15 0.00 45.74 3.09
2830 3305 6.073447 TGAGGACAAAATTATCCTTGGCTA 57.927 37.500 7.15 0.00 45.74 3.93
2831 3306 4.934356 TGAGGACAAAATTATCCTTGGCT 58.066 39.130 7.15 0.00 45.74 4.75
2832 3307 5.859205 ATGAGGACAAAATTATCCTTGGC 57.141 39.130 7.15 0.00 45.74 4.52
2833 3308 8.071177 AGAAATGAGGACAAAATTATCCTTGG 57.929 34.615 7.15 0.00 45.74 3.61
2834 3309 8.964772 AGAGAAATGAGGACAAAATTATCCTTG 58.035 33.333 7.15 0.00 45.74 3.61
2846 3321 8.677300 GCACAAAATTATAGAGAAATGAGGACA 58.323 33.333 0.00 0.00 0.00 4.02
2847 3322 8.131731 GGCACAAAATTATAGAGAAATGAGGAC 58.868 37.037 0.00 0.00 0.00 3.85
2848 3323 7.285401 GGGCACAAAATTATAGAGAAATGAGGA 59.715 37.037 0.00 0.00 0.00 3.71
2849 3324 7.286316 AGGGCACAAAATTATAGAGAAATGAGG 59.714 37.037 0.00 0.00 0.00 3.86
2850 3325 8.133627 CAGGGCACAAAATTATAGAGAAATGAG 58.866 37.037 0.00 0.00 0.00 2.90
2851 3326 7.833682 TCAGGGCACAAAATTATAGAGAAATGA 59.166 33.333 0.00 0.00 0.00 2.57
2852 3327 7.999679 TCAGGGCACAAAATTATAGAGAAATG 58.000 34.615 0.00 0.00 0.00 2.32
2853 3328 8.773033 ATCAGGGCACAAAATTATAGAGAAAT 57.227 30.769 0.00 0.00 0.00 2.17
2854 3329 7.833682 TGATCAGGGCACAAAATTATAGAGAAA 59.166 33.333 0.00 0.00 0.00 2.52
2855 3330 7.345691 TGATCAGGGCACAAAATTATAGAGAA 58.654 34.615 0.00 0.00 0.00 2.87
2856 3331 6.899089 TGATCAGGGCACAAAATTATAGAGA 58.101 36.000 0.00 0.00 0.00 3.10
2857 3332 7.446319 TGATGATCAGGGCACAAAATTATAGAG 59.554 37.037 0.09 0.00 0.00 2.43
2858 3333 7.289310 TGATGATCAGGGCACAAAATTATAGA 58.711 34.615 0.09 0.00 0.00 1.98
2859 3334 7.514784 TGATGATCAGGGCACAAAATTATAG 57.485 36.000 0.09 0.00 0.00 1.31
2860 3335 7.524202 GCATGATGATCAGGGCACAAAATTATA 60.524 37.037 9.28 0.00 32.82 0.98
2861 3336 6.740401 GCATGATGATCAGGGCACAAAATTAT 60.740 38.462 9.28 0.00 32.82 1.28
2862 3337 5.452216 GCATGATGATCAGGGCACAAAATTA 60.452 40.000 9.28 0.00 32.82 1.40
2863 3338 4.682320 GCATGATGATCAGGGCACAAAATT 60.682 41.667 9.28 0.00 32.82 1.82
2864 3339 3.181469 GCATGATGATCAGGGCACAAAAT 60.181 43.478 9.28 0.00 32.82 1.82
2865 3340 2.166870 GCATGATGATCAGGGCACAAAA 59.833 45.455 9.28 0.00 32.82 2.44
2866 3341 1.752498 GCATGATGATCAGGGCACAAA 59.248 47.619 9.28 0.00 32.82 2.83
2867 3342 1.395635 GCATGATGATCAGGGCACAA 58.604 50.000 9.28 0.00 32.82 3.33
2868 3343 3.105187 GCATGATGATCAGGGCACA 57.895 52.632 9.28 0.00 32.82 4.57
2902 3377 9.170890 ACTCTATCCATTCCATTCCTTTATGTA 57.829 33.333 0.00 0.00 0.00 2.29
2903 3378 8.050316 ACTCTATCCATTCCATTCCTTTATGT 57.950 34.615 0.00 0.00 0.00 2.29
2904 3379 9.664332 CTACTCTATCCATTCCATTCCTTTATG 57.336 37.037 0.00 0.00 0.00 1.90
2905 3380 8.830741 CCTACTCTATCCATTCCATTCCTTTAT 58.169 37.037 0.00 0.00 0.00 1.40
2906 3381 8.016652 TCCTACTCTATCCATTCCATTCCTTTA 58.983 37.037 0.00 0.00 0.00 1.85
2907 3382 6.851836 TCCTACTCTATCCATTCCATTCCTTT 59.148 38.462 0.00 0.00 0.00 3.11
2908 3383 6.271159 GTCCTACTCTATCCATTCCATTCCTT 59.729 42.308 0.00 0.00 0.00 3.36
2909 3384 5.782845 GTCCTACTCTATCCATTCCATTCCT 59.217 44.000 0.00 0.00 0.00 3.36
2910 3385 5.544176 TGTCCTACTCTATCCATTCCATTCC 59.456 44.000 0.00 0.00 0.00 3.01
2911 3386 6.495181 TCTGTCCTACTCTATCCATTCCATTC 59.505 42.308 0.00 0.00 0.00 2.67
2912 3387 6.385443 TCTGTCCTACTCTATCCATTCCATT 58.615 40.000 0.00 0.00 0.00 3.16
2913 3388 5.970289 TCTGTCCTACTCTATCCATTCCAT 58.030 41.667 0.00 0.00 0.00 3.41
2914 3389 5.389520 CTCTGTCCTACTCTATCCATTCCA 58.610 45.833 0.00 0.00 0.00 3.53
2915 3390 4.770010 CCTCTGTCCTACTCTATCCATTCC 59.230 50.000 0.00 0.00 0.00 3.01
2916 3391 5.390387 ACCTCTGTCCTACTCTATCCATTC 58.610 45.833 0.00 0.00 0.00 2.67
2917 3392 5.411103 ACCTCTGTCCTACTCTATCCATT 57.589 43.478 0.00 0.00 0.00 3.16
2918 3393 5.613544 ACTACCTCTGTCCTACTCTATCCAT 59.386 44.000 0.00 0.00 0.00 3.41
2919 3394 4.976442 ACTACCTCTGTCCTACTCTATCCA 59.024 45.833 0.00 0.00 0.00 3.41
2920 3395 5.571791 ACTACCTCTGTCCTACTCTATCC 57.428 47.826 0.00 0.00 0.00 2.59
2921 3396 6.013984 AGCTACTACCTCTGTCCTACTCTATC 60.014 46.154 0.00 0.00 0.00 2.08
2922 3397 5.847817 AGCTACTACCTCTGTCCTACTCTAT 59.152 44.000 0.00 0.00 0.00 1.98
2923 3398 5.218179 AGCTACTACCTCTGTCCTACTCTA 58.782 45.833 0.00 0.00 0.00 2.43
2924 3399 4.042174 AGCTACTACCTCTGTCCTACTCT 58.958 47.826 0.00 0.00 0.00 3.24
2925 3400 4.426736 AGCTACTACCTCTGTCCTACTC 57.573 50.000 0.00 0.00 0.00 2.59
2926 3401 4.866327 AAGCTACTACCTCTGTCCTACT 57.134 45.455 0.00 0.00 0.00 2.57
2927 3402 5.918426 AAAAGCTACTACCTCTGTCCTAC 57.082 43.478 0.00 0.00 0.00 3.18
2928 3403 5.778750 ACAAAAAGCTACTACCTCTGTCCTA 59.221 40.000 0.00 0.00 0.00 2.94
2929 3404 4.593634 ACAAAAAGCTACTACCTCTGTCCT 59.406 41.667 0.00 0.00 0.00 3.85
2930 3405 4.895961 ACAAAAAGCTACTACCTCTGTCC 58.104 43.478 0.00 0.00 0.00 4.02
2931 3406 5.635700 CAGACAAAAAGCTACTACCTCTGTC 59.364 44.000 0.00 0.00 0.00 3.51
2932 3407 5.511545 CCAGACAAAAAGCTACTACCTCTGT 60.512 44.000 0.00 0.00 0.00 3.41
2933 3408 4.932200 CCAGACAAAAAGCTACTACCTCTG 59.068 45.833 0.00 0.00 0.00 3.35
2934 3409 4.020128 CCCAGACAAAAAGCTACTACCTCT 60.020 45.833 0.00 0.00 0.00 3.69
2939 3414 5.562298 AGTTCCCAGACAAAAAGCTACTA 57.438 39.130 0.00 0.00 0.00 1.82
2952 4867 4.838986 AGAGCTAAACAGTTAGTTCCCAGA 59.161 41.667 6.69 0.00 44.46 3.86
2954 4869 4.838986 AGAGAGCTAAACAGTTAGTTCCCA 59.161 41.667 6.69 0.00 44.46 4.37
2961 4876 5.412594 CCATGCAAAGAGAGCTAAACAGTTA 59.587 40.000 0.00 0.00 0.00 2.24
2964 4879 3.755378 ACCATGCAAAGAGAGCTAAACAG 59.245 43.478 0.00 0.00 0.00 3.16
2989 4904 3.455737 TCCCCAAGGAAGCAAAAGG 57.544 52.632 0.00 0.00 40.08 3.11
3000 4915 3.869065 TCGCATACTAGTTTTCCCCAAG 58.131 45.455 0.00 0.00 0.00 3.61
3002 4917 4.497291 AATCGCATACTAGTTTTCCCCA 57.503 40.909 0.00 0.00 0.00 4.96
3006 4921 8.911247 AAATCCAAAATCGCATACTAGTTTTC 57.089 30.769 0.00 0.00 0.00 2.29
3094 5016 2.750166 TCTCCTTGTGCGTTTGACAAAA 59.250 40.909 1.27 0.00 33.01 2.44
3098 5696 0.235926 GCTCTCCTTGTGCGTTTGAC 59.764 55.000 0.00 0.00 0.00 3.18
3104 5702 2.522836 AGATATGCTCTCCTTGTGCG 57.477 50.000 0.00 0.00 37.94 5.34
3131 5729 4.025401 CCGTTGCTTGGACCACGC 62.025 66.667 15.82 15.82 0.00 5.34
3158 5756 9.852091 TTTTGGGAAATTTTCTGTTGATTTTTG 57.148 25.926 8.93 0.00 0.00 2.44
3189 5787 1.151668 GTGCAAGAGCCACACTACTG 58.848 55.000 0.00 0.00 41.13 2.74
3190 5788 0.758734 TGTGCAAGAGCCACACTACT 59.241 50.000 0.00 0.00 41.13 2.57
3196 5794 6.867662 ATATATTACTTGTGCAAGAGCCAC 57.132 37.500 17.62 0.00 40.79 5.01
3265 5863 4.219725 TGGGCTATTTGCTAAAGTTTGTCC 59.780 41.667 0.00 0.00 42.39 4.02
3267 5865 7.475137 TTATGGGCTATTTGCTAAAGTTTGT 57.525 32.000 0.00 0.00 42.39 2.83
3284 5882 1.995376 ATGGGTTTCGGATTATGGGC 58.005 50.000 0.00 0.00 0.00 5.36
3313 5914 8.704668 ACTCCTACCAATGTTTTGAAAAGAATT 58.295 29.630 0.00 0.00 34.60 2.17
3314 5915 8.143835 CACTCCTACCAATGTTTTGAAAAGAAT 58.856 33.333 0.00 0.00 34.60 2.40
3317 5918 7.038154 TCACTCCTACCAATGTTTTGAAAAG 57.962 36.000 0.00 0.00 34.60 2.27
3350 5974 0.112412 ACATTTCCCTCGGCCAAACT 59.888 50.000 2.24 0.00 0.00 2.66
3365 5989 1.618343 GGCAAAGCCCAAGTGTACATT 59.382 47.619 0.00 0.00 44.06 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.