Multiple sequence alignment - TraesCS4A01G397000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G397000 chr4A 100.000 3227 0 0 1 3227 671943972 671947198 0.000000e+00 5960
1 TraesCS4A01G397000 chr4A 100.000 129 0 0 3533 3661 671947504 671947632 4.720000e-59 239
2 TraesCS4A01G397000 chr4A 93.103 116 5 3 3107 3220 583790387 583790273 2.260000e-37 167
3 TraesCS4A01G397000 chr7D 90.976 3147 187 54 1 3097 55427603 55430702 0.000000e+00 4148
4 TraesCS4A01G397000 chr7D 86.637 449 42 5 2417 2865 55605493 55605923 7.110000e-132 481
5 TraesCS4A01G397000 chr7A 88.658 2363 158 60 798 3096 59416952 59419268 0.000000e+00 2778
6 TraesCS4A01G397000 chr7A 84.175 297 20 12 353 639 59416573 59416852 2.800000e-66 263
7 TraesCS4A01G397000 chr7A 92.793 111 8 0 3107 3217 162590176 162590066 1.050000e-35 161
8 TraesCS4A01G397000 chr7A 92.793 111 8 0 3107 3217 162590067 162590177 1.050000e-35 161
9 TraesCS4A01G397000 chr7A 86.735 98 6 4 1 96 59416302 59416394 6.470000e-18 102
10 TraesCS4A01G397000 chr5D 93.913 115 4 3 3107 3220 478223290 478223402 1.750000e-38 171
11 TraesCS4A01G397000 chr5A 92.241 116 5 1 3106 3221 471411607 471411496 1.050000e-35 161
12 TraesCS4A01G397000 chr5A 91.964 112 7 2 3106 3216 52349496 52349606 4.890000e-34 156
13 TraesCS4A01G397000 chr5A 89.516 124 6 4 3097 3219 471411493 471411610 2.280000e-32 150
14 TraesCS4A01G397000 chr6A 90.833 120 5 4 3107 3220 543531543 543531424 4.890000e-34 156
15 TraesCS4A01G397000 chr1A 90.517 116 11 0 3106 3221 14163830 14163715 1.760000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G397000 chr4A 671943972 671947632 3660 False 3099.500000 5960 100.000000 1 3661 2 chr4A.!!$F1 3660
1 TraesCS4A01G397000 chr7D 55427603 55430702 3099 False 4148.000000 4148 90.976000 1 3097 1 chr7D.!!$F1 3096
2 TraesCS4A01G397000 chr7A 59416302 59419268 2966 False 1047.666667 2778 86.522667 1 3096 3 chr7A.!!$F2 3095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 421 0.037697 TAGCTAGTGGTTGCGTGGTG 60.038 55.0 0.0 0.0 0.00 4.17 F
792 806 0.117340 AGCTAGGTCCCACCAAGAGT 59.883 55.0 0.0 0.0 41.95 3.24 F
1643 1707 0.032130 TTATCTGTCGCCGCCTCATC 59.968 55.0 0.0 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1612 0.170561 GCTTGCAGGCAGAACATCTG 59.829 55.0 16.98 3.0 46.9 2.9 R
2428 2520 0.305922 GCACACAGACAGTTGAGCAC 59.694 55.0 0.00 0.0 0.0 4.4 R
3198 3301 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.0 0.00 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 0.687354 CCATGGATTCCCTCTACCCG 59.313 60.000 5.56 0.00 0.00 5.28
140 142 1.225704 CCTCCTCCCCACAGCATTC 59.774 63.158 0.00 0.00 0.00 2.67
143 145 0.547471 TCCTCCCCACAGCATTCTCA 60.547 55.000 0.00 0.00 0.00 3.27
144 146 0.549950 CCTCCCCACAGCATTCTCAT 59.450 55.000 0.00 0.00 0.00 2.90
346 348 0.893270 TCCAGTTTGGACCCAATGCG 60.893 55.000 1.88 0.00 42.67 4.73
373 375 1.010580 CAACCGCGTATATTGTGCCA 58.989 50.000 4.92 0.00 0.00 4.92
419 421 0.037697 TAGCTAGTGGTTGCGTGGTG 60.038 55.000 0.00 0.00 0.00 4.17
500 503 3.339253 TGTGCACAGCATCAATAGACT 57.661 42.857 17.42 0.00 41.91 3.24
693 706 8.604035 CAAATTTGCTAAGATCACGTACTGTAT 58.396 33.333 5.01 0.00 0.00 2.29
707 720 8.907718 CACGTACTGTATTTCAGCGTGTTGTG 62.908 46.154 14.47 5.17 45.87 3.33
736 750 1.654105 GACAGATTAACTCGGTGCACG 59.346 52.381 11.45 6.55 46.11 5.34
740 754 1.659098 GATTAACTCGGTGCACGGAAG 59.341 52.381 24.95 20.20 44.45 3.46
751 765 3.748863 CACGGAAGCTAGAGTGCAT 57.251 52.632 0.00 0.00 34.99 3.96
752 766 1.284657 CACGGAAGCTAGAGTGCATG 58.715 55.000 0.00 0.00 34.99 4.06
753 767 0.460987 ACGGAAGCTAGAGTGCATGC 60.461 55.000 11.82 11.82 34.99 4.06
766 780 1.153025 GCATGCTGCTCTGGATGGA 60.153 57.895 11.37 0.00 40.96 3.41
767 781 0.537600 GCATGCTGCTCTGGATGGAT 60.538 55.000 11.37 0.00 40.96 3.41
792 806 0.117340 AGCTAGGTCCCACCAAGAGT 59.883 55.000 0.00 0.00 41.95 3.24
793 807 1.361543 AGCTAGGTCCCACCAAGAGTA 59.638 52.381 0.00 0.00 41.95 2.59
794 808 1.481363 GCTAGGTCCCACCAAGAGTAC 59.519 57.143 0.00 0.00 41.95 2.73
795 809 2.888911 GCTAGGTCCCACCAAGAGTACT 60.889 54.545 0.00 0.00 41.95 2.73
848 862 1.081242 CGGCTTGTTCACATGGTGC 60.081 57.895 0.00 0.00 32.98 5.01
896 910 1.210870 CCACTGCAAATTGTGTGTGC 58.789 50.000 15.58 0.00 38.78 4.57
904 918 1.167851 AATTGTGTGTGCCATCTCGG 58.832 50.000 0.00 0.00 38.11 4.63
909 923 0.682292 TGTGTGCCATCTCGGTTGTA 59.318 50.000 0.00 0.00 36.97 2.41
1007 1058 0.529378 CTTGGTTCTGCAATGGAGGC 59.471 55.000 1.05 0.00 0.00 4.70
1038 1089 3.076092 CTCCTGGCTGTGCTCCTT 58.924 61.111 0.00 0.00 0.00 3.36
1047 1098 3.706373 GTGCTCCTTCTGGCGGGA 61.706 66.667 0.00 0.00 0.00 5.14
1104 1155 0.894184 TCTTCACCTTCGGCGACTCT 60.894 55.000 10.16 0.00 0.00 3.24
1230 1281 2.190578 GGCAAGCTGGCTACCGAT 59.809 61.111 14.08 0.00 40.14 4.18
1244 1295 3.819337 GCTACCGATATCACTGGTCAGTA 59.181 47.826 3.06 0.00 40.20 2.74
1249 1300 4.233005 CGATATCACTGGTCAGTATGCAG 58.767 47.826 3.06 0.00 40.20 4.41
1252 1303 2.247358 TCACTGGTCAGTATGCAGTCA 58.753 47.619 3.06 0.00 37.33 3.41
1254 1305 1.970640 ACTGGTCAGTATGCAGTCACA 59.029 47.619 1.24 0.00 34.97 3.58
1260 1311 4.082190 GGTCAGTATGCAGTCACACTCTTA 60.082 45.833 0.00 0.00 34.76 2.10
1261 1312 5.394663 GGTCAGTATGCAGTCACACTCTTAT 60.395 44.000 0.00 0.00 34.76 1.73
1262 1313 5.746245 GTCAGTATGCAGTCACACTCTTATC 59.254 44.000 0.00 0.00 34.76 1.75
1263 1314 5.654209 TCAGTATGCAGTCACACTCTTATCT 59.346 40.000 0.00 0.00 34.76 1.98
1265 1316 6.255237 CAGTATGCAGTCACACTCTTATCTTG 59.745 42.308 0.00 0.00 24.83 3.02
1267 1318 4.960938 TGCAGTCACACTCTTATCTTGTT 58.039 39.130 0.00 0.00 0.00 2.83
1269 1320 6.521162 TGCAGTCACACTCTTATCTTGTTAA 58.479 36.000 0.00 0.00 0.00 2.01
1303 1354 6.299805 TCTTCAGCATCTACTTACATGGTT 57.700 37.500 0.00 0.00 0.00 3.67
1304 1355 6.711277 TCTTCAGCATCTACTTACATGGTTT 58.289 36.000 0.00 0.00 0.00 3.27
1347 1403 8.916654 CACTTGCTAATATATCTCTTGTTACGG 58.083 37.037 0.00 0.00 0.00 4.02
1397 1453 3.719646 TACTAGCTACCCGCCCGCA 62.720 63.158 0.00 0.00 40.39 5.69
1439 1495 1.134371 GGGAAGAACCTTCTGATCGGG 60.134 57.143 0.62 0.00 37.65 5.14
1502 1558 5.060569 CACGGCGCTTATGTATGTAAGTATC 59.939 44.000 6.90 0.00 34.80 2.24
1533 1589 2.748605 GATGTCTCGAGAAATCGGCAT 58.251 47.619 25.95 19.01 29.94 4.40
1537 1593 1.134367 TCTCGAGAAATCGGCATCGTT 59.866 47.619 14.01 0.00 36.58 3.85
1548 1604 2.232941 TCGGCATCGTTAAAGGAGAAGT 59.767 45.455 0.00 0.00 37.69 3.01
1556 1612 7.201453 GCATCGTTAAAGGAGAAGTTCTAGTTC 60.201 40.741 5.09 0.00 0.00 3.01
1573 1629 1.881973 GTTCAGATGTTCTGCCTGCAA 59.118 47.619 0.00 0.00 43.95 4.08
1592 1648 3.855950 GCAAGCTACTTCATGTTCATTGC 59.144 43.478 0.00 0.00 34.46 3.56
1605 1669 0.733909 TCATTGCTCACAGCTCGTCG 60.734 55.000 0.00 0.00 42.97 5.12
1606 1670 0.733909 CATTGCTCACAGCTCGTCGA 60.734 55.000 0.00 0.00 42.97 4.20
1615 1679 3.002759 TCACAGCTCGTCGAGATCATAAG 59.997 47.826 26.11 9.69 0.00 1.73
1633 1697 9.347934 GATCATAAGTGGATTAGTTATCTGTCG 57.652 37.037 0.00 0.00 33.58 4.35
1643 1707 0.032130 TTATCTGTCGCCGCCTCATC 59.968 55.000 0.00 0.00 0.00 2.92
2025 2093 2.267961 GGCACGGGTCCAGTAAGG 59.732 66.667 0.00 0.00 39.47 2.69
2026 2094 2.590114 GGCACGGGTCCAGTAAGGT 61.590 63.158 0.00 0.00 39.02 3.50
2027 2095 1.375523 GCACGGGTCCAGTAAGGTG 60.376 63.158 0.00 0.00 39.02 4.00
2028 2096 1.295423 CACGGGTCCAGTAAGGTGG 59.705 63.158 0.00 0.00 39.02 4.61
2030 2098 1.190178 ACGGGTCCAGTAAGGTGGTC 61.190 60.000 0.00 0.00 38.88 4.02
2033 2101 1.065418 GGGTCCAGTAAGGTGGTCATG 60.065 57.143 0.00 0.00 38.88 3.07
2034 2102 1.906574 GGTCCAGTAAGGTGGTCATGA 59.093 52.381 0.00 0.00 38.88 3.07
2035 2103 2.505819 GGTCCAGTAAGGTGGTCATGAT 59.494 50.000 0.00 0.00 38.88 2.45
2036 2104 3.432326 GGTCCAGTAAGGTGGTCATGATC 60.432 52.174 0.00 0.00 38.88 2.92
2037 2105 2.430694 TCCAGTAAGGTGGTCATGATCG 59.569 50.000 0.00 0.00 38.88 3.69
2040 2108 4.302455 CAGTAAGGTGGTCATGATCGATC 58.698 47.826 18.72 18.72 0.00 3.69
2041 2109 2.515926 AAGGTGGTCATGATCGATCG 57.484 50.000 20.03 9.36 0.00 3.69
2043 2111 1.338337 AGGTGGTCATGATCGATCGAC 59.662 52.381 22.06 19.68 0.00 4.20
2044 2112 1.603172 GGTGGTCATGATCGATCGACC 60.603 57.143 30.54 30.54 46.69 4.79
2046 2114 2.732412 GGTCATGATCGATCGACCAT 57.268 50.000 31.46 19.53 45.96 3.55
2075 2143 8.797266 ATTAATTTCTGAAACTGAAACCGAAC 57.203 30.769 4.73 0.00 34.99 3.95
2085 2153 0.657368 GAAACCGAACGCAGCAACTG 60.657 55.000 0.00 0.00 34.12 3.16
2220 2288 1.079127 CGACTCCCAGCGGTTCAAT 60.079 57.895 0.00 0.00 0.00 2.57
2322 2390 1.248785 TGTACAGCCTCGTCACCTCC 61.249 60.000 0.00 0.00 0.00 4.30
2338 2406 3.012153 TCCCCTGGAGATCAAGGTG 57.988 57.895 2.56 0.00 0.00 4.00
2339 2407 0.621571 TCCCCTGGAGATCAAGGTGG 60.622 60.000 2.56 3.95 0.00 4.61
2340 2408 1.639635 CCCCTGGAGATCAAGGTGGG 61.640 65.000 2.56 0.00 0.00 4.61
2341 2409 1.225704 CCTGGAGATCAAGGTGGGC 59.774 63.158 0.00 0.00 0.00 5.36
2342 2410 1.153289 CTGGAGATCAAGGTGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
2343 2411 2.514824 GGAGATCAAGGTGGGCGC 60.515 66.667 0.00 0.00 0.00 6.53
2344 2412 2.514824 GAGATCAAGGTGGGCGCC 60.515 66.667 21.18 21.18 0.00 6.53
2345 2413 3.329542 GAGATCAAGGTGGGCGCCA 62.330 63.158 30.85 12.04 0.00 5.69
2367 2459 3.429043 CCATGCATGGCACTGTTTC 57.571 52.632 31.95 0.00 43.04 2.78
2369 2461 1.135199 CCATGCATGGCACTGTTTCTC 60.135 52.381 31.95 0.00 43.04 2.87
2370 2462 1.816835 CATGCATGGCACTGTTTCTCT 59.183 47.619 19.40 0.00 43.04 3.10
2374 2466 3.132646 TGCATGGCACTGTTTCTCTTTTT 59.867 39.130 0.00 0.00 31.71 1.94
2375 2467 3.737774 GCATGGCACTGTTTCTCTTTTTC 59.262 43.478 0.00 0.00 0.00 2.29
2376 2468 4.500375 GCATGGCACTGTTTCTCTTTTTCT 60.500 41.667 0.00 0.00 0.00 2.52
2377 2469 4.637483 TGGCACTGTTTCTCTTTTTCTG 57.363 40.909 0.00 0.00 0.00 3.02
2378 2470 4.016444 TGGCACTGTTTCTCTTTTTCTGT 58.984 39.130 0.00 0.00 0.00 3.41
2379 2471 4.096382 TGGCACTGTTTCTCTTTTTCTGTC 59.904 41.667 0.00 0.00 0.00 3.51
2380 2472 4.096382 GGCACTGTTTCTCTTTTTCTGTCA 59.904 41.667 0.00 0.00 0.00 3.58
2381 2473 5.221126 GGCACTGTTTCTCTTTTTCTGTCAT 60.221 40.000 0.00 0.00 0.00 3.06
2382 2474 6.017109 GGCACTGTTTCTCTTTTTCTGTCATA 60.017 38.462 0.00 0.00 0.00 2.15
2383 2475 6.853362 GCACTGTTTCTCTTTTTCTGTCATAC 59.147 38.462 0.00 0.00 0.00 2.39
2384 2476 7.355778 CACTGTTTCTCTTTTTCTGTCATACC 58.644 38.462 0.00 0.00 0.00 2.73
2385 2477 6.202954 ACTGTTTCTCTTTTTCTGTCATACCG 59.797 38.462 0.00 0.00 0.00 4.02
2386 2478 5.468746 TGTTTCTCTTTTTCTGTCATACCGG 59.531 40.000 0.00 0.00 0.00 5.28
2387 2479 3.596214 TCTCTTTTTCTGTCATACCGGC 58.404 45.455 0.00 0.00 0.00 6.13
2388 2480 3.007506 TCTCTTTTTCTGTCATACCGGCA 59.992 43.478 0.00 0.00 0.00 5.69
2389 2481 3.941483 CTCTTTTTCTGTCATACCGGCAT 59.059 43.478 0.00 0.00 0.00 4.40
2390 2482 4.331968 TCTTTTTCTGTCATACCGGCATT 58.668 39.130 0.00 0.00 0.00 3.56
2391 2483 4.764823 TCTTTTTCTGTCATACCGGCATTT 59.235 37.500 0.00 0.00 0.00 2.32
2392 2484 5.941058 TCTTTTTCTGTCATACCGGCATTTA 59.059 36.000 0.00 0.00 0.00 1.40
2393 2485 6.431543 TCTTTTTCTGTCATACCGGCATTTAA 59.568 34.615 0.00 0.00 0.00 1.52
2396 2488 3.199071 TCTGTCATACCGGCATTTAACCT 59.801 43.478 0.00 0.00 0.00 3.50
2398 2490 3.055021 TGTCATACCGGCATTTAACCTGA 60.055 43.478 0.00 0.00 0.00 3.86
2407 2499 3.193267 GGCATTTAACCTGACATTGCAGA 59.807 43.478 8.94 0.00 38.14 4.26
2408 2500 4.142093 GGCATTTAACCTGACATTGCAGAT 60.142 41.667 8.94 2.46 38.14 2.90
2412 2504 6.403866 TTTAACCTGACATTGCAGATTTGT 57.596 33.333 8.94 0.00 38.14 2.83
2413 2505 3.928727 ACCTGACATTGCAGATTTGTG 57.071 42.857 8.94 0.00 38.14 3.33
2414 2506 3.489355 ACCTGACATTGCAGATTTGTGA 58.511 40.909 8.94 0.00 38.14 3.58
2421 2513 1.150827 TGCAGATTTGTGACGCTCTG 58.849 50.000 4.97 4.97 38.49 3.35
2440 2532 0.503117 GTCGTTCGTGCTCAACTGTC 59.497 55.000 0.00 0.00 0.00 3.51
2441 2533 0.384309 TCGTTCGTGCTCAACTGTCT 59.616 50.000 0.00 0.00 0.00 3.41
2443 2535 1.571919 GTTCGTGCTCAACTGTCTGT 58.428 50.000 0.00 0.00 0.00 3.41
2445 2537 0.459899 TCGTGCTCAACTGTCTGTGT 59.540 50.000 0.00 0.00 0.00 3.72
2447 2539 0.305922 GTGCTCAACTGTCTGTGTGC 59.694 55.000 0.00 0.00 0.00 4.57
2448 2540 1.153597 TGCTCAACTGTCTGTGTGCG 61.154 55.000 1.96 0.00 0.00 5.34
2449 2541 1.835483 GCTCAACTGTCTGTGTGCGG 61.835 60.000 0.00 0.00 0.00 5.69
2450 2542 1.224069 CTCAACTGTCTGTGTGCGGG 61.224 60.000 0.00 0.00 0.00 6.13
2451 2543 1.523711 CAACTGTCTGTGTGCGGGT 60.524 57.895 0.00 0.00 0.00 5.28
2452 2544 1.095228 CAACTGTCTGTGTGCGGGTT 61.095 55.000 0.00 0.00 0.00 4.11
2453 2545 0.393808 AACTGTCTGTGTGCGGGTTT 60.394 50.000 0.00 0.00 0.00 3.27
2454 2546 1.095228 ACTGTCTGTGTGCGGGTTTG 61.095 55.000 0.00 0.00 0.00 2.93
2659 2751 1.148157 GGCATCGACCTCGTCACATG 61.148 60.000 0.00 0.00 40.80 3.21
2685 2777 1.372997 ACGCACTGGTCAGCTAACG 60.373 57.895 0.00 0.32 0.00 3.18
2686 2778 1.372997 CGCACTGGTCAGCTAACGT 60.373 57.895 0.00 0.00 0.00 3.99
2687 2779 1.344942 CGCACTGGTCAGCTAACGTC 61.345 60.000 0.00 0.00 0.00 4.34
2701 2793 1.855213 AACGTCGTCATCGGTCGGAA 61.855 55.000 0.00 0.00 38.31 4.30
2704 2796 0.381089 GTCGTCATCGGTCGGAAGAT 59.619 55.000 0.00 0.00 38.00 2.40
2718 2810 2.082437 GAAGATGACGATGGCGCACG 62.082 60.000 10.83 14.45 42.48 5.34
2719 2811 2.835701 AAGATGACGATGGCGCACGT 62.836 55.000 21.86 21.86 45.32 4.49
2720 2812 1.587876 GATGACGATGGCGCACGTA 60.588 57.895 21.76 13.03 42.74 3.57
2721 2813 1.808234 GATGACGATGGCGCACGTAC 61.808 60.000 21.76 16.33 42.74 3.67
2884 2977 5.266733 TGGAGACATGGTTTATACGTACC 57.733 43.478 0.00 0.00 33.40 3.34
2922 3015 1.068055 GGTGCAAGCACTGGATCTTTG 60.068 52.381 22.79 0.00 45.52 2.77
2923 3016 1.610522 GTGCAAGCACTGGATCTTTGT 59.389 47.619 17.37 0.00 43.12 2.83
3006 3103 3.858503 GCATGGCTCCTTTTGAACAGAAC 60.859 47.826 0.00 0.00 0.00 3.01
3008 3105 2.091885 TGGCTCCTTTTGAACAGAACCT 60.092 45.455 0.00 0.00 0.00 3.50
3020 3121 4.394920 TGAACAGAACCTGTGTTTCAAGTC 59.605 41.667 0.00 0.00 44.62 3.01
3037 3138 4.338400 TCAAGTCCTATCTATGTGGTGACG 59.662 45.833 0.00 0.00 0.00 4.35
3045 3146 1.464608 CTATGTGGTGACGTGCCAAAG 59.535 52.381 9.70 5.24 37.81 2.77
3048 3149 0.736053 GTGGTGACGTGCCAAAGAAA 59.264 50.000 9.70 0.00 37.81 2.52
3049 3150 1.021202 TGGTGACGTGCCAAAGAAAG 58.979 50.000 6.02 0.00 32.29 2.62
3050 3151 0.310854 GGTGACGTGCCAAAGAAAGG 59.689 55.000 0.00 0.00 0.00 3.11
3053 3154 1.403679 TGACGTGCCAAAGAAAGGTTG 59.596 47.619 0.00 0.00 0.00 3.77
3068 3171 4.385358 AAGGTTGTTTGTGTGGCTTTAG 57.615 40.909 0.00 0.00 0.00 1.85
3088 3191 3.600388 AGTGAACGGGCAAAGAAGATAG 58.400 45.455 0.00 0.00 0.00 2.08
3097 3200 6.093633 ACGGGCAAAGAAGATAGAATTTGTAC 59.906 38.462 0.00 0.00 35.55 2.90
3098 3201 6.093495 CGGGCAAAGAAGATAGAATTTGTACA 59.907 38.462 0.00 0.00 35.55 2.90
3099 3202 7.361713 CGGGCAAAGAAGATAGAATTTGTACAA 60.362 37.037 3.59 3.59 35.55 2.41
3100 3203 7.755373 GGGCAAAGAAGATAGAATTTGTACAAC 59.245 37.037 8.07 0.00 35.55 3.32
3101 3204 8.296713 GGCAAAGAAGATAGAATTTGTACAACA 58.703 33.333 8.07 0.30 35.55 3.33
3102 3205 9.677567 GCAAAGAAGATAGAATTTGTACAACAA 57.322 29.630 8.07 0.00 36.11 2.83
3106 3209 9.520515 AGAAGATAGAATTTGTACAACAATGGT 57.479 29.630 8.07 0.00 38.00 3.55
3109 3212 9.959721 AGATAGAATTTGTACAACAATGGTACT 57.040 29.630 8.07 0.00 41.27 2.73
3111 3214 7.448748 AGAATTTGTACAACAATGGTACTCC 57.551 36.000 8.07 0.00 41.27 3.85
3121 3224 2.195389 TGGTACTCCATCCGTTCCG 58.805 57.895 0.00 0.00 39.03 4.30
3122 3225 0.323633 TGGTACTCCATCCGTTCCGA 60.324 55.000 0.00 0.00 39.03 4.55
3123 3226 0.819582 GGTACTCCATCCGTTCCGAA 59.180 55.000 0.00 0.00 0.00 4.30
3124 3227 1.411612 GGTACTCCATCCGTTCCGAAT 59.588 52.381 0.00 0.00 0.00 3.34
3125 3228 2.159000 GGTACTCCATCCGTTCCGAATT 60.159 50.000 0.00 0.00 0.00 2.17
3126 3229 3.068590 GGTACTCCATCCGTTCCGAATTA 59.931 47.826 0.00 0.00 0.00 1.40
3127 3230 3.175109 ACTCCATCCGTTCCGAATTAC 57.825 47.619 0.00 0.00 0.00 1.89
3128 3231 2.764572 ACTCCATCCGTTCCGAATTACT 59.235 45.455 0.00 0.00 0.00 2.24
3129 3232 3.197116 ACTCCATCCGTTCCGAATTACTT 59.803 43.478 0.00 0.00 0.00 2.24
3130 3233 3.527533 TCCATCCGTTCCGAATTACTTG 58.472 45.455 0.00 0.00 0.00 3.16
3131 3234 3.055675 TCCATCCGTTCCGAATTACTTGT 60.056 43.478 0.00 0.00 0.00 3.16
3132 3235 3.308866 CCATCCGTTCCGAATTACTTGTC 59.691 47.826 0.00 0.00 0.00 3.18
3133 3236 3.947910 TCCGTTCCGAATTACTTGTCT 57.052 42.857 0.00 0.00 0.00 3.41
3134 3237 4.261578 TCCGTTCCGAATTACTTGTCTT 57.738 40.909 0.00 0.00 0.00 3.01
3135 3238 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
3136 3239 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
3137 3240 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
3138 3241 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
3139 3242 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
3140 3243 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
3141 3244 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
3142 3245 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
3143 3246 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
3144 3247 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
3145 3248 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
3146 3249 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
3147 3250 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
3148 3251 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
3150 3253 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
3151 3254 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
3152 3255 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
3153 3256 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
3154 3257 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
3155 3258 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
3156 3259 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
3157 3260 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
3158 3261 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
3170 3273 3.488363 ACGGATGTATCTAGACACCTCC 58.512 50.000 13.80 13.80 30.52 4.30
3171 3274 2.484651 CGGATGTATCTAGACACCTCCG 59.515 54.545 26.40 26.40 42.43 4.63
3172 3275 3.488363 GGATGTATCTAGACACCTCCGT 58.512 50.000 9.38 0.00 30.52 4.69
3173 3276 4.649692 GGATGTATCTAGACACCTCCGTA 58.350 47.826 9.38 0.00 30.52 4.02
3174 3277 5.254901 GGATGTATCTAGACACCTCCGTAT 58.745 45.833 9.38 0.00 30.52 3.06
3175 3278 5.354792 GGATGTATCTAGACACCTCCGTATC 59.645 48.000 9.38 0.00 30.52 2.24
3176 3279 5.563876 TGTATCTAGACACCTCCGTATCT 57.436 43.478 0.00 0.00 0.00 1.98
3177 3280 6.676990 TGTATCTAGACACCTCCGTATCTA 57.323 41.667 0.00 0.00 0.00 1.98
3178 3281 7.071069 TGTATCTAGACACCTCCGTATCTAA 57.929 40.000 0.00 0.00 0.00 2.10
3179 3282 7.512130 TGTATCTAGACACCTCCGTATCTAAA 58.488 38.462 0.00 0.00 0.00 1.85
3180 3283 6.880942 ATCTAGACACCTCCGTATCTAAAC 57.119 41.667 0.00 0.00 0.00 2.01
3181 3284 5.748402 TCTAGACACCTCCGTATCTAAACA 58.252 41.667 0.00 0.00 0.00 2.83
3182 3285 6.182627 TCTAGACACCTCCGTATCTAAACAA 58.817 40.000 0.00 0.00 0.00 2.83
3183 3286 5.733620 AGACACCTCCGTATCTAAACAAA 57.266 39.130 0.00 0.00 0.00 2.83
3184 3287 6.295719 AGACACCTCCGTATCTAAACAAAT 57.704 37.500 0.00 0.00 0.00 2.32
3185 3288 6.338937 AGACACCTCCGTATCTAAACAAATC 58.661 40.000 0.00 0.00 0.00 2.17
3186 3289 6.154706 AGACACCTCCGTATCTAAACAAATCT 59.845 38.462 0.00 0.00 0.00 2.40
3187 3290 7.341256 AGACACCTCCGTATCTAAACAAATCTA 59.659 37.037 0.00 0.00 0.00 1.98
3188 3291 7.844009 ACACCTCCGTATCTAAACAAATCTAA 58.156 34.615 0.00 0.00 0.00 2.10
3189 3292 7.980099 ACACCTCCGTATCTAAACAAATCTAAG 59.020 37.037 0.00 0.00 0.00 2.18
3190 3293 8.195436 CACCTCCGTATCTAAACAAATCTAAGA 58.805 37.037 0.00 0.00 0.00 2.10
3191 3294 8.196103 ACCTCCGTATCTAAACAAATCTAAGAC 58.804 37.037 0.00 0.00 0.00 3.01
3192 3295 8.195436 CCTCCGTATCTAAACAAATCTAAGACA 58.805 37.037 0.00 0.00 0.00 3.41
3193 3296 9.582431 CTCCGTATCTAAACAAATCTAAGACAA 57.418 33.333 0.00 0.00 0.00 3.18
3194 3297 9.582431 TCCGTATCTAAACAAATCTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
3195 3298 9.367444 CCGTATCTAAACAAATCTAAGACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
3203 3306 8.842358 AACAAATCTAAGACAAGTAATTCGGA 57.158 30.769 0.00 0.00 0.00 4.55
3204 3307 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
3205 3308 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
3220 3323 1.777941 GGAACGGAGGGAGTAGATGT 58.222 55.000 0.00 0.00 0.00 3.06
3221 3324 2.941480 GGAACGGAGGGAGTAGATGTA 58.059 52.381 0.00 0.00 0.00 2.29
3222 3325 2.885894 GGAACGGAGGGAGTAGATGTAG 59.114 54.545 0.00 0.00 0.00 2.74
3223 3326 3.434739 GGAACGGAGGGAGTAGATGTAGA 60.435 52.174 0.00 0.00 0.00 2.59
3224 3327 3.947612 ACGGAGGGAGTAGATGTAGAA 57.052 47.619 0.00 0.00 0.00 2.10
3225 3328 3.822940 ACGGAGGGAGTAGATGTAGAAG 58.177 50.000 0.00 0.00 0.00 2.85
3226 3329 2.554893 CGGAGGGAGTAGATGTAGAAGC 59.445 54.545 0.00 0.00 0.00 3.86
3560 3663 9.919348 CAGTTAATGTGCATTTAATTAATTGGC 57.081 29.630 17.45 12.99 33.39 4.52
3561 3664 8.816144 AGTTAATGTGCATTTAATTAATTGGCG 58.184 29.630 17.45 0.00 30.72 5.69
3562 3665 5.655893 ATGTGCATTTAATTAATTGGCGC 57.344 34.783 17.45 16.96 0.00 6.53
3563 3666 3.868077 TGTGCATTTAATTAATTGGCGCC 59.132 39.130 22.73 22.73 0.00 6.53
3564 3667 3.060607 GTGCATTTAATTAATTGGCGCCG 60.061 43.478 23.90 3.03 0.00 6.46
3565 3668 3.181486 TGCATTTAATTAATTGGCGCCGA 60.181 39.130 21.20 21.20 0.00 5.54
3566 3669 3.799420 GCATTTAATTAATTGGCGCCGAA 59.201 39.130 22.97 16.93 0.00 4.30
3567 3670 4.085107 GCATTTAATTAATTGGCGCCGAAG 60.085 41.667 22.97 2.11 0.00 3.79
3579 3682 4.800554 CCGAAGGTGCTCCAACTT 57.199 55.556 7.70 0.00 44.76 2.66
3580 3683 2.247790 CCGAAGGTGCTCCAACTTG 58.752 57.895 7.70 0.00 41.88 3.16
3581 3684 1.237285 CCGAAGGTGCTCCAACTTGG 61.237 60.000 7.70 0.74 41.88 3.61
3582 3685 1.856265 CGAAGGTGCTCCAACTTGGC 61.856 60.000 7.70 0.00 41.88 4.52
3583 3686 1.527433 GAAGGTGCTCCAACTTGGCC 61.527 60.000 7.70 0.00 41.88 5.36
3584 3687 3.365265 GGTGCTCCAACTTGGCCG 61.365 66.667 2.52 0.00 37.47 6.13
3585 3688 3.365265 GTGCTCCAACTTGGCCGG 61.365 66.667 0.00 0.00 37.47 6.13
3591 3694 3.451894 CAACTTGGCCGGCCCATC 61.452 66.667 41.75 18.68 44.89 3.51
3592 3695 3.661648 AACTTGGCCGGCCCATCT 61.662 61.111 41.75 21.67 44.89 2.90
3593 3696 2.305607 AACTTGGCCGGCCCATCTA 61.306 57.895 41.75 21.65 44.89 1.98
3594 3697 1.858739 AACTTGGCCGGCCCATCTAA 61.859 55.000 41.75 27.21 44.89 2.10
3595 3698 1.526917 CTTGGCCGGCCCATCTAAG 60.527 63.158 41.75 31.71 44.89 2.18
3596 3699 2.965716 CTTGGCCGGCCCATCTAAGG 62.966 65.000 41.75 19.48 44.89 2.69
3605 3708 2.734755 CCCATCTAAGGGTGCAATGA 57.265 50.000 0.00 0.00 44.24 2.57
3606 3709 2.579873 CCCATCTAAGGGTGCAATGAG 58.420 52.381 0.00 0.00 44.24 2.90
3607 3710 2.173356 CCCATCTAAGGGTGCAATGAGA 59.827 50.000 0.00 0.00 44.24 3.27
3608 3711 3.474600 CCATCTAAGGGTGCAATGAGAG 58.525 50.000 0.00 0.00 0.00 3.20
3609 3712 3.135348 CCATCTAAGGGTGCAATGAGAGA 59.865 47.826 0.00 0.00 0.00 3.10
3610 3713 4.378774 CATCTAAGGGTGCAATGAGAGAG 58.621 47.826 0.00 0.00 0.00 3.20
3611 3714 3.713003 TCTAAGGGTGCAATGAGAGAGA 58.287 45.455 0.00 0.00 0.00 3.10
3612 3715 3.703556 TCTAAGGGTGCAATGAGAGAGAG 59.296 47.826 0.00 0.00 0.00 3.20
3613 3716 0.540923 AGGGTGCAATGAGAGAGAGC 59.459 55.000 0.00 0.00 0.00 4.09
3614 3717 0.540923 GGGTGCAATGAGAGAGAGCT 59.459 55.000 0.00 0.00 0.00 4.09
3615 3718 1.473080 GGGTGCAATGAGAGAGAGCTC 60.473 57.143 5.27 5.27 41.62 4.09
3626 3729 3.694043 GAGAGAGCTCTTCCAGGTTTT 57.306 47.619 19.36 0.00 40.61 2.43
3627 3730 4.810191 GAGAGAGCTCTTCCAGGTTTTA 57.190 45.455 19.36 0.00 40.61 1.52
3628 3731 4.754322 GAGAGAGCTCTTCCAGGTTTTAG 58.246 47.826 19.36 0.00 40.61 1.85
3629 3732 3.517500 AGAGAGCTCTTCCAGGTTTTAGG 59.482 47.826 19.36 0.00 36.31 2.69
3630 3733 3.515901 GAGAGCTCTTCCAGGTTTTAGGA 59.484 47.826 19.36 0.00 30.88 2.94
3631 3734 3.910627 AGAGCTCTTCCAGGTTTTAGGAA 59.089 43.478 11.45 0.00 41.41 3.36
3638 3741 4.724279 TCCAGGTTTTAGGAAGCTTTCT 57.276 40.909 13.02 13.02 0.00 2.52
3639 3742 5.836024 TCCAGGTTTTAGGAAGCTTTCTA 57.164 39.130 10.64 10.64 0.00 2.10
3640 3743 5.805728 TCCAGGTTTTAGGAAGCTTTCTAG 58.194 41.667 14.20 2.43 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 2.900671 GAATGCTGTGGGGAGGAGGC 62.901 65.000 0.00 0.00 0.00 4.70
140 142 1.205485 GCACGCGTCAGCTCTATGAG 61.205 60.000 9.86 0.00 42.32 2.90
143 145 1.226802 CTGCACGCGTCAGCTCTAT 60.227 57.895 20.39 0.00 42.32 1.98
144 146 2.179267 CTGCACGCGTCAGCTCTA 59.821 61.111 20.39 2.05 42.32 2.43
265 267 8.144478 TGTAATAGATTGTAGATTCTGGAGTGC 58.856 37.037 0.00 0.00 0.00 4.40
267 269 8.643324 GGTGTAATAGATTGTAGATTCTGGAGT 58.357 37.037 0.00 0.00 0.00 3.85
346 348 2.340453 TATACGCGGTTGGGACTCGC 62.340 60.000 12.47 0.00 40.04 5.03
360 362 4.316205 TGGAGTACTGGCACAATATACG 57.684 45.455 0.00 0.00 38.70 3.06
373 375 5.412594 CAGTTATTGCACATGTTGGAGTACT 59.587 40.000 0.00 0.00 0.00 2.73
645 658 2.584608 CGGCGGTCTCCTTCCATT 59.415 61.111 0.00 0.00 0.00 3.16
646 659 4.162690 GCGGCGGTCTCCTTCCAT 62.163 66.667 9.78 0.00 0.00 3.41
647 660 3.949885 TAGCGGCGGTCTCCTTCCA 62.950 63.158 17.55 0.00 0.00 3.53
648 661 3.140225 CTAGCGGCGGTCTCCTTCC 62.140 68.421 17.55 0.00 0.00 3.46
649 662 2.413765 CTAGCGGCGGTCTCCTTC 59.586 66.667 17.55 0.00 0.00 3.46
690 703 3.870723 TCACACAACACGCTGAAATAC 57.129 42.857 0.00 0.00 0.00 1.89
693 706 1.333308 CCATCACACAACACGCTGAAA 59.667 47.619 0.00 0.00 0.00 2.69
707 720 4.363999 CGAGTTAATCTGTCCTCCATCAC 58.636 47.826 0.00 0.00 0.00 3.06
736 750 1.297664 CAGCATGCACTCTAGCTTCC 58.702 55.000 21.98 0.00 34.61 3.46
750 764 2.910977 TCATATCCATCCAGAGCAGCAT 59.089 45.455 0.00 0.00 0.00 3.79
751 765 2.038164 GTCATATCCATCCAGAGCAGCA 59.962 50.000 0.00 0.00 0.00 4.41
752 766 2.038164 TGTCATATCCATCCAGAGCAGC 59.962 50.000 0.00 0.00 0.00 5.25
753 767 3.865302 GCTGTCATATCCATCCAGAGCAG 60.865 52.174 0.00 0.00 0.00 4.24
766 780 2.330216 GGTGGGACCTAGCTGTCATAT 58.670 52.381 0.00 0.00 36.97 1.78
767 781 1.007842 TGGTGGGACCTAGCTGTCATA 59.992 52.381 8.62 0.00 39.58 2.15
792 806 1.737199 AGCACCCAACCCAGTAAGTA 58.263 50.000 0.00 0.00 0.00 2.24
793 807 0.850784 AAGCACCCAACCCAGTAAGT 59.149 50.000 0.00 0.00 0.00 2.24
794 808 1.534729 GAAGCACCCAACCCAGTAAG 58.465 55.000 0.00 0.00 0.00 2.34
795 809 0.111639 GGAAGCACCCAACCCAGTAA 59.888 55.000 0.00 0.00 0.00 2.24
896 910 2.930040 GACACACATACAACCGAGATGG 59.070 50.000 0.00 0.00 46.41 3.51
909 923 8.318412 TGTGTGACCTTTATATAAGACACACAT 58.682 33.333 28.34 4.49 46.32 3.21
1038 1089 3.473647 CCATGAGCTCCCGCCAGA 61.474 66.667 12.15 0.00 36.60 3.86
1104 1155 4.644234 TCGTTGTTACCTATATCCACCGAA 59.356 41.667 0.00 0.00 0.00 4.30
1224 1275 4.217767 GCATACTGACCAGTGATATCGGTA 59.782 45.833 12.54 11.02 42.52 4.02
1230 1281 4.023291 TGACTGCATACTGACCAGTGATA 58.977 43.478 12.54 0.00 42.52 2.15
1244 1295 5.157940 ACAAGATAAGAGTGTGACTGCAT 57.842 39.130 0.00 0.00 0.00 3.96
1252 1303 9.035607 CGCATCTAATTAACAAGATAAGAGTGT 57.964 33.333 2.00 0.00 31.25 3.55
1254 1305 9.601217 AACGCATCTAATTAACAAGATAAGAGT 57.399 29.630 2.00 0.00 31.25 3.24
1260 1311 8.492673 TGAAGAACGCATCTAATTAACAAGAT 57.507 30.769 0.00 0.00 37.42 2.40
1261 1312 7.413000 GCTGAAGAACGCATCTAATTAACAAGA 60.413 37.037 0.00 0.00 37.42 3.02
1262 1313 6.684555 GCTGAAGAACGCATCTAATTAACAAG 59.315 38.462 0.00 0.00 37.42 3.16
1263 1314 6.148645 TGCTGAAGAACGCATCTAATTAACAA 59.851 34.615 0.00 0.00 37.42 2.83
1265 1316 6.106877 TGCTGAAGAACGCATCTAATTAAC 57.893 37.500 0.00 0.00 37.42 2.01
1277 1328 5.233050 CCATGTAAGTAGATGCTGAAGAACG 59.767 44.000 0.00 0.00 0.00 3.95
1294 1345 9.800433 CAATCATAATACTGCAAAACCATGTAA 57.200 29.630 0.00 0.00 0.00 2.41
1303 1354 5.806502 GCAAGTGCAATCATAATACTGCAAA 59.193 36.000 0.00 0.00 45.71 3.68
1304 1355 5.125900 AGCAAGTGCAATCATAATACTGCAA 59.874 36.000 6.00 0.00 45.71 4.08
1347 1403 3.969802 AGCTGCAACCACGCAAGC 61.970 61.111 1.02 0.00 42.45 4.01
1439 1495 4.090057 GCAGACGCGAAGTTGGCC 62.090 66.667 15.93 0.00 0.00 5.36
1524 1580 3.869065 TCTCCTTTAACGATGCCGATTT 58.131 40.909 0.00 0.00 39.50 2.17
1533 1589 7.230108 TCTGAACTAGAACTTCTCCTTTAACGA 59.770 37.037 0.00 0.00 30.84 3.85
1537 1593 8.423906 ACATCTGAACTAGAACTTCTCCTTTA 57.576 34.615 0.00 0.00 39.30 1.85
1556 1612 0.170561 GCTTGCAGGCAGAACATCTG 59.829 55.000 16.98 3.00 46.90 2.90
1573 1629 4.394300 GTGAGCAATGAACATGAAGTAGCT 59.606 41.667 0.00 1.06 0.00 3.32
1592 1648 0.729690 TGATCTCGACGAGCTGTGAG 59.270 55.000 20.11 0.00 0.00 3.51
1615 1679 3.050619 CGGCGACAGATAACTAATCCAC 58.949 50.000 0.00 0.00 34.90 4.02
1633 1697 4.293415 CAGAAAAATAATGATGAGGCGGC 58.707 43.478 0.00 0.00 0.00 6.53
1680 1744 5.254115 AGAGGCCATTTAAACTCTACAACC 58.746 41.667 5.01 0.00 38.46 3.77
1994 2058 0.668706 CGTGCCGAGGATGGATCATC 60.669 60.000 0.00 0.00 39.87 2.92
1996 2064 2.796193 CCGTGCCGAGGATGGATCA 61.796 63.158 0.00 0.00 0.00 2.92
2022 2090 2.031870 TCGATCGATCATGACCACCTT 58.968 47.619 24.40 0.00 0.00 3.50
2033 2101 6.712241 AATTAATCACATGGTCGATCGATC 57.288 37.500 22.50 21.98 0.00 3.69
2034 2102 6.931281 AGAAATTAATCACATGGTCGATCGAT 59.069 34.615 22.50 1.81 0.00 3.59
2035 2103 6.200854 CAGAAATTAATCACATGGTCGATCGA 59.799 38.462 15.15 15.15 0.00 3.59
2036 2104 6.200854 TCAGAAATTAATCACATGGTCGATCG 59.799 38.462 9.36 9.36 0.00 3.69
2037 2105 7.482654 TCAGAAATTAATCACATGGTCGATC 57.517 36.000 0.00 0.00 0.00 3.69
2040 2108 7.482743 CAGTTTCAGAAATTAATCACATGGTCG 59.517 37.037 0.00 0.00 0.00 4.79
2041 2109 8.514594 TCAGTTTCAGAAATTAATCACATGGTC 58.485 33.333 0.00 0.00 0.00 4.02
2043 2111 9.695526 TTTCAGTTTCAGAAATTAATCACATGG 57.304 29.630 0.00 0.00 30.56 3.66
2046 2114 7.860373 CGGTTTCAGTTTCAGAAATTAATCACA 59.140 33.333 0.00 0.00 37.33 3.58
2075 2143 2.390599 ATGCCGTACAGTTGCTGCG 61.391 57.895 0.00 0.00 34.37 5.18
2220 2288 4.838152 GCGGCGCTCATCTTCCCA 62.838 66.667 26.86 0.00 0.00 4.37
2322 2390 1.918253 CCCACCTTGATCTCCAGGG 59.082 63.158 10.00 4.36 46.60 4.45
2340 2408 4.865761 CATGCATGGCACTGGCGC 62.866 66.667 19.40 0.00 43.04 6.53
2341 2409 4.201679 CCATGCATGGCACTGGCG 62.202 66.667 31.95 6.86 43.04 5.69
2367 2459 3.334691 TGCCGGTATGACAGAAAAAGAG 58.665 45.455 1.90 0.00 0.00 2.85
2369 2461 4.701956 AATGCCGGTATGACAGAAAAAG 57.298 40.909 5.55 0.00 0.00 2.27
2370 2462 6.383415 GTTAAATGCCGGTATGACAGAAAAA 58.617 36.000 5.55 0.00 0.00 1.94
2374 2466 3.199071 AGGTTAAATGCCGGTATGACAGA 59.801 43.478 5.55 0.00 0.00 3.41
2375 2467 3.312421 CAGGTTAAATGCCGGTATGACAG 59.688 47.826 5.55 0.00 0.00 3.51
2376 2468 3.055021 TCAGGTTAAATGCCGGTATGACA 60.055 43.478 5.55 0.00 0.00 3.58
2377 2469 3.311596 GTCAGGTTAAATGCCGGTATGAC 59.688 47.826 5.55 5.07 0.00 3.06
2378 2470 3.055021 TGTCAGGTTAAATGCCGGTATGA 60.055 43.478 5.55 0.00 0.00 2.15
2379 2471 3.275143 TGTCAGGTTAAATGCCGGTATG 58.725 45.455 5.55 0.00 0.00 2.39
2380 2472 3.637911 TGTCAGGTTAAATGCCGGTAT 57.362 42.857 1.90 0.00 0.00 2.73
2381 2473 3.637911 ATGTCAGGTTAAATGCCGGTA 57.362 42.857 1.90 0.00 0.00 4.02
2382 2474 2.491693 CAATGTCAGGTTAAATGCCGGT 59.508 45.455 1.90 0.00 0.00 5.28
2383 2475 2.735126 GCAATGTCAGGTTAAATGCCGG 60.735 50.000 0.00 0.00 0.00 6.13
2384 2476 2.094803 TGCAATGTCAGGTTAAATGCCG 60.095 45.455 0.00 0.00 0.00 5.69
2385 2477 3.193267 TCTGCAATGTCAGGTTAAATGCC 59.807 43.478 5.20 0.00 34.91 4.40
2386 2478 4.439305 TCTGCAATGTCAGGTTAAATGC 57.561 40.909 5.20 0.00 34.91 3.56
2387 2479 6.869913 ACAAATCTGCAATGTCAGGTTAAATG 59.130 34.615 4.20 2.94 36.46 2.32
2388 2480 6.869913 CACAAATCTGCAATGTCAGGTTAAAT 59.130 34.615 4.20 0.00 36.46 1.40
2389 2481 6.040278 TCACAAATCTGCAATGTCAGGTTAAA 59.960 34.615 4.20 0.00 36.46 1.52
2390 2482 5.534278 TCACAAATCTGCAATGTCAGGTTAA 59.466 36.000 4.20 0.00 36.46 2.01
2391 2483 5.048782 GTCACAAATCTGCAATGTCAGGTTA 60.049 40.000 4.20 0.00 36.46 2.85
2392 2484 3.890756 TCACAAATCTGCAATGTCAGGTT 59.109 39.130 5.20 2.10 38.95 3.50
2393 2485 3.254166 GTCACAAATCTGCAATGTCAGGT 59.746 43.478 5.20 0.00 34.91 4.00
2396 2488 2.350676 GCGTCACAAATCTGCAATGTCA 60.351 45.455 0.00 0.00 0.00 3.58
2398 2490 1.881973 AGCGTCACAAATCTGCAATGT 59.118 42.857 0.00 0.00 0.00 2.71
2407 2499 1.792949 GAACGACAGAGCGTCACAAAT 59.207 47.619 0.00 0.00 45.70 2.32
2408 2500 1.205657 GAACGACAGAGCGTCACAAA 58.794 50.000 0.00 0.00 45.70 2.83
2412 2504 1.370051 CACGAACGACAGAGCGTCA 60.370 57.895 0.14 0.00 45.70 4.35
2413 2505 2.708059 GCACGAACGACAGAGCGTC 61.708 63.158 0.14 0.00 44.86 5.19
2421 2513 0.503117 GACAGTTGAGCACGAACGAC 59.497 55.000 0.14 0.00 0.00 4.34
2428 2520 0.305922 GCACACAGACAGTTGAGCAC 59.694 55.000 0.00 0.00 0.00 4.40
2440 2532 2.118404 ACCACAAACCCGCACACAG 61.118 57.895 0.00 0.00 0.00 3.66
2441 2533 2.044848 ACCACAAACCCGCACACA 60.045 55.556 0.00 0.00 0.00 3.72
2443 2535 2.044848 ACACCACAAACCCGCACA 60.045 55.556 0.00 0.00 0.00 4.57
2445 2537 1.821759 CTGACACCACAAACCCGCA 60.822 57.895 0.00 0.00 0.00 5.69
2447 2539 1.896660 CCCTGACACCACAAACCCG 60.897 63.158 0.00 0.00 0.00 5.28
2448 2540 0.396556 AACCCTGACACCACAAACCC 60.397 55.000 0.00 0.00 0.00 4.11
2449 2541 1.029681 GAACCCTGACACCACAAACC 58.970 55.000 0.00 0.00 0.00 3.27
2450 2542 1.404035 GTGAACCCTGACACCACAAAC 59.596 52.381 0.00 0.00 0.00 2.93
2451 2543 1.757682 GTGAACCCTGACACCACAAA 58.242 50.000 0.00 0.00 0.00 2.83
2452 2544 0.462937 CGTGAACCCTGACACCACAA 60.463 55.000 0.00 0.00 34.05 3.33
2453 2545 1.145156 CGTGAACCCTGACACCACA 59.855 57.895 0.00 0.00 34.05 4.17
2454 2546 1.597027 CCGTGAACCCTGACACCAC 60.597 63.158 0.00 0.00 34.05 4.16
2685 2777 0.381089 ATCTTCCGACCGATGACGAC 59.619 55.000 0.00 0.00 42.66 4.34
2686 2778 0.380733 CATCTTCCGACCGATGACGA 59.619 55.000 0.00 0.00 39.43 4.20
2687 2779 0.380733 TCATCTTCCGACCGATGACG 59.619 55.000 5.76 0.00 40.62 4.35
2701 2793 2.000215 TACGTGCGCCATCGTCATCT 62.000 55.000 21.35 4.44 40.70 2.90
2704 2796 2.505337 GTACGTGCGCCATCGTCA 60.505 61.111 21.35 9.21 40.70 4.35
2737 2829 3.428862 GGGCACACATTATTTTCCCTTCG 60.429 47.826 0.00 0.00 0.00 3.79
2884 2977 3.670627 GCACCCATAACTTCGAGCTTTTG 60.671 47.826 0.00 0.00 0.00 2.44
2938 3034 8.620416 CGGTGATCATCAAATTTTAAGGACATA 58.380 33.333 6.80 0.00 0.00 2.29
2947 3043 7.784633 AAAAACACGGTGATCATCAAATTTT 57.215 28.000 16.29 6.08 0.00 1.82
3006 3103 6.536582 CACATAGATAGGACTTGAAACACAGG 59.463 42.308 0.00 0.00 0.00 4.00
3008 3105 6.013725 ACCACATAGATAGGACTTGAAACACA 60.014 38.462 0.00 0.00 0.00 3.72
3020 3121 2.545952 GGCACGTCACCACATAGATAGG 60.546 54.545 0.00 0.00 0.00 2.57
3037 3138 3.370672 CACAAACAACCTTTCTTTGGCAC 59.629 43.478 0.00 0.00 30.52 5.01
3045 3146 2.959507 AGCCACACAAACAACCTTTC 57.040 45.000 0.00 0.00 0.00 2.62
3048 3149 3.130340 CACTAAAGCCACACAAACAACCT 59.870 43.478 0.00 0.00 0.00 3.50
3049 3150 3.129638 TCACTAAAGCCACACAAACAACC 59.870 43.478 0.00 0.00 0.00 3.77
3050 3151 4.364415 TCACTAAAGCCACACAAACAAC 57.636 40.909 0.00 0.00 0.00 3.32
3053 3154 3.359654 CGTTCACTAAAGCCACACAAAC 58.640 45.455 0.00 0.00 0.00 2.93
3068 3171 3.596214 TCTATCTTCTTTGCCCGTTCAC 58.404 45.455 0.00 0.00 0.00 3.18
3088 3191 7.209471 TGGAGTACCATTGTTGTACAAATTC 57.791 36.000 10.51 0.00 41.96 2.17
3116 3219 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
3117 3220 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
3118 3221 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
3119 3222 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
3120 3223 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
3121 3224 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
3122 3225 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
3124 3227 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
3125 3228 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
3126 3229 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
3127 3230 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
3128 3231 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
3129 3232 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
3130 3233 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
3131 3234 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
3132 3235 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
3133 3236 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
3134 3237 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
3147 3250 5.254901 GGAGGTGTCTAGATACATCCGTAT 58.745 45.833 29.61 5.41 41.94 3.06
3148 3251 4.649692 GGAGGTGTCTAGATACATCCGTA 58.350 47.826 29.61 0.00 41.94 4.02
3149 3252 3.488363 GGAGGTGTCTAGATACATCCGT 58.512 50.000 29.61 7.31 41.94 4.69
3151 3254 3.488363 ACGGAGGTGTCTAGATACATCC 58.512 50.000 31.93 31.93 45.75 3.51
3152 3255 6.174760 AGATACGGAGGTGTCTAGATACATC 58.825 44.000 21.74 21.74 42.10 3.06
3153 3256 6.129414 AGATACGGAGGTGTCTAGATACAT 57.871 41.667 19.78 13.87 42.10 2.29
3154 3257 5.563876 AGATACGGAGGTGTCTAGATACA 57.436 43.478 19.78 1.01 42.10 2.29
3155 3258 7.443575 TGTTTAGATACGGAGGTGTCTAGATAC 59.556 40.741 10.97 10.97 44.42 2.24
3156 3259 7.512130 TGTTTAGATACGGAGGTGTCTAGATA 58.488 38.462 0.00 0.00 44.42 1.98
3157 3260 6.363065 TGTTTAGATACGGAGGTGTCTAGAT 58.637 40.000 0.00 0.00 44.42 1.98
3158 3261 5.748402 TGTTTAGATACGGAGGTGTCTAGA 58.252 41.667 0.00 0.00 44.42 2.43
3159 3262 6.446781 TTGTTTAGATACGGAGGTGTCTAG 57.553 41.667 1.90 0.00 44.42 2.43
3160 3263 6.839124 TTTGTTTAGATACGGAGGTGTCTA 57.161 37.500 0.00 0.00 42.10 2.59
3161 3264 5.733620 TTTGTTTAGATACGGAGGTGTCT 57.266 39.130 0.00 0.00 45.30 3.41
3162 3265 6.338937 AGATTTGTTTAGATACGGAGGTGTC 58.661 40.000 0.00 0.00 34.77 3.67
3163 3266 6.295719 AGATTTGTTTAGATACGGAGGTGT 57.704 37.500 0.00 0.00 0.00 4.16
3164 3267 8.195436 TCTTAGATTTGTTTAGATACGGAGGTG 58.805 37.037 0.00 0.00 0.00 4.00
3165 3268 8.196103 GTCTTAGATTTGTTTAGATACGGAGGT 58.804 37.037 0.00 0.00 0.00 3.85
3166 3269 8.195436 TGTCTTAGATTTGTTTAGATACGGAGG 58.805 37.037 0.00 0.00 0.00 4.30
3167 3270 9.582431 TTGTCTTAGATTTGTTTAGATACGGAG 57.418 33.333 0.00 0.00 0.00 4.63
3168 3271 9.582431 CTTGTCTTAGATTTGTTTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
3169 3272 9.367444 ACTTGTCTTAGATTTGTTTAGATACGG 57.633 33.333 0.00 0.00 0.00 4.02
3177 3280 9.280174 TCCGAATTACTTGTCTTAGATTTGTTT 57.720 29.630 0.00 0.00 0.00 2.83
3178 3281 8.842358 TCCGAATTACTTGTCTTAGATTTGTT 57.158 30.769 0.00 0.00 0.00 2.83
3179 3282 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
3180 3283 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
3181 3284 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
3182 3285 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
3183 3286 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
3184 3287 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
3185 3288 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
3186 3289 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
3187 3290 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
3188 3291 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
3189 3292 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3190 3293 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3191 3294 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3192 3295 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3193 3296 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3194 3297 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3195 3298 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3196 3299 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3197 3300 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
3198 3301 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
3199 3302 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
3200 3303 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
3201 3304 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
3202 3305 3.818180 TCTACATCTACTCCCTCCGTTC 58.182 50.000 0.00 0.00 0.00 3.95
3203 3306 3.947612 TCTACATCTACTCCCTCCGTT 57.052 47.619 0.00 0.00 0.00 4.44
3204 3307 3.822940 CTTCTACATCTACTCCCTCCGT 58.177 50.000 0.00 0.00 0.00 4.69
3205 3308 2.554893 GCTTCTACATCTACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
3534 3637 9.919348 GCCAATTAATTAAATGCACATTAACTG 57.081 29.630 7.62 6.41 0.00 3.16
3535 3638 8.816144 CGCCAATTAATTAAATGCACATTAACT 58.184 29.630 7.62 1.88 0.00 2.24
3536 3639 7.582319 GCGCCAATTAATTAAATGCACATTAAC 59.418 33.333 7.62 0.00 0.00 2.01
3537 3640 7.254590 GGCGCCAATTAATTAAATGCACATTAA 60.255 33.333 24.80 8.49 0.00 1.40
3538 3641 6.201806 GGCGCCAATTAATTAAATGCACATTA 59.798 34.615 24.80 0.00 0.00 1.90
3539 3642 5.007528 GGCGCCAATTAATTAAATGCACATT 59.992 36.000 24.80 0.00 0.00 2.71
3540 3643 4.511082 GGCGCCAATTAATTAAATGCACAT 59.489 37.500 24.80 0.00 0.00 3.21
3541 3644 3.868077 GGCGCCAATTAATTAAATGCACA 59.132 39.130 24.80 0.00 0.00 4.57
3542 3645 3.060607 CGGCGCCAATTAATTAAATGCAC 60.061 43.478 28.98 3.04 0.00 4.57
3543 3646 3.119291 CGGCGCCAATTAATTAAATGCA 58.881 40.909 28.98 0.00 0.00 3.96
3544 3647 3.376540 TCGGCGCCAATTAATTAAATGC 58.623 40.909 28.98 7.17 0.00 3.56
3545 3648 4.444056 CCTTCGGCGCCAATTAATTAAATG 59.556 41.667 28.98 4.86 0.00 2.32
3546 3649 4.098807 ACCTTCGGCGCCAATTAATTAAAT 59.901 37.500 28.98 0.00 0.00 1.40
3547 3650 3.444388 ACCTTCGGCGCCAATTAATTAAA 59.556 39.130 28.98 4.79 0.00 1.52
3548 3651 3.018149 ACCTTCGGCGCCAATTAATTAA 58.982 40.909 28.98 0.00 0.00 1.40
3549 3652 2.356382 CACCTTCGGCGCCAATTAATTA 59.644 45.455 28.98 0.34 0.00 1.40
3550 3653 1.134175 CACCTTCGGCGCCAATTAATT 59.866 47.619 28.98 0.00 0.00 1.40
3551 3654 0.738389 CACCTTCGGCGCCAATTAAT 59.262 50.000 28.98 3.41 0.00 1.40
3552 3655 1.928706 GCACCTTCGGCGCCAATTAA 61.929 55.000 28.98 13.47 0.00 1.40
3553 3656 2.403378 GCACCTTCGGCGCCAATTA 61.403 57.895 28.98 5.33 0.00 1.40
3554 3657 3.747976 GCACCTTCGGCGCCAATT 61.748 61.111 28.98 1.64 0.00 2.32
3555 3658 4.722700 AGCACCTTCGGCGCCAAT 62.723 61.111 28.98 2.74 36.08 3.16
3560 3663 3.423154 GTTGGAGCACCTTCGGCG 61.423 66.667 0.00 0.00 37.04 6.46
3561 3664 1.600916 AAGTTGGAGCACCTTCGGC 60.601 57.895 0.71 0.00 37.04 5.54
3562 3665 1.237285 CCAAGTTGGAGCACCTTCGG 61.237 60.000 17.60 0.00 40.96 4.30
3563 3666 1.856265 GCCAAGTTGGAGCACCTTCG 61.856 60.000 26.52 0.00 40.96 3.79
3564 3667 1.527433 GGCCAAGTTGGAGCACCTTC 61.527 60.000 26.52 4.72 40.96 3.46
3565 3668 1.531602 GGCCAAGTTGGAGCACCTT 60.532 57.895 26.52 0.00 40.96 3.50
3566 3669 2.116125 GGCCAAGTTGGAGCACCT 59.884 61.111 26.52 0.00 40.96 4.00
3567 3670 3.365265 CGGCCAAGTTGGAGCACC 61.365 66.667 26.52 15.39 40.96 5.01
3568 3671 3.365265 CCGGCCAAGTTGGAGCAC 61.365 66.667 26.52 10.69 40.96 4.40
3574 3677 2.550699 TAGATGGGCCGGCCAAGTTG 62.551 60.000 44.46 0.00 37.98 3.16
3575 3678 1.858739 TTAGATGGGCCGGCCAAGTT 61.859 55.000 44.46 28.30 37.98 2.66
3576 3679 2.270874 CTTAGATGGGCCGGCCAAGT 62.271 60.000 44.46 29.86 37.98 3.16
3577 3680 1.526917 CTTAGATGGGCCGGCCAAG 60.527 63.158 44.46 33.18 37.98 3.61
3578 3681 2.595095 CTTAGATGGGCCGGCCAA 59.405 61.111 44.46 37.76 37.98 4.52
3579 3682 3.488569 CCTTAGATGGGCCGGCCA 61.489 66.667 44.46 30.82 37.98 5.36
3580 3683 4.271016 CCCTTAGATGGGCCGGCC 62.271 72.222 38.57 38.57 40.84 6.13
3587 3690 3.135348 TCTCTCATTGCACCCTTAGATGG 59.865 47.826 0.00 0.00 0.00 3.51
3588 3691 4.100653 TCTCTCTCATTGCACCCTTAGATG 59.899 45.833 0.00 0.00 0.00 2.90
3589 3692 4.293494 TCTCTCTCATTGCACCCTTAGAT 58.707 43.478 0.00 0.00 0.00 1.98
3590 3693 3.703556 CTCTCTCTCATTGCACCCTTAGA 59.296 47.826 0.00 0.00 0.00 2.10
3591 3694 3.740764 GCTCTCTCTCATTGCACCCTTAG 60.741 52.174 0.00 0.00 0.00 2.18
3592 3695 2.169352 GCTCTCTCTCATTGCACCCTTA 59.831 50.000 0.00 0.00 0.00 2.69
3593 3696 1.065564 GCTCTCTCTCATTGCACCCTT 60.066 52.381 0.00 0.00 0.00 3.95
3594 3697 0.540923 GCTCTCTCTCATTGCACCCT 59.459 55.000 0.00 0.00 0.00 4.34
3595 3698 0.540923 AGCTCTCTCTCATTGCACCC 59.459 55.000 0.00 0.00 0.00 4.61
3596 3699 1.481772 AGAGCTCTCTCTCATTGCACC 59.518 52.381 11.45 0.00 46.32 5.01
3597 3700 2.965572 AGAGCTCTCTCTCATTGCAC 57.034 50.000 11.45 0.00 46.32 4.57
3606 3709 3.694043 AAAACCTGGAAGAGCTCTCTC 57.306 47.619 18.55 15.76 39.39 3.20
3607 3710 3.517500 CCTAAAACCTGGAAGAGCTCTCT 59.482 47.826 18.55 7.43 42.75 3.10
3608 3711 3.515901 TCCTAAAACCTGGAAGAGCTCTC 59.484 47.826 18.55 10.50 34.07 3.20
3609 3712 3.521727 TCCTAAAACCTGGAAGAGCTCT 58.478 45.455 11.45 11.45 34.07 4.09
3610 3713 3.983044 TCCTAAAACCTGGAAGAGCTC 57.017 47.619 5.27 5.27 34.07 4.09
3616 3719 5.061721 AGAAAGCTTCCTAAAACCTGGAA 57.938 39.130 0.00 0.00 39.73 3.53
3617 3720 4.724279 AGAAAGCTTCCTAAAACCTGGA 57.276 40.909 0.00 0.00 0.00 3.86
3618 3721 4.396478 GCTAGAAAGCTTCCTAAAACCTGG 59.604 45.833 0.00 0.00 45.85 4.45
3619 3722 5.553290 GCTAGAAAGCTTCCTAAAACCTG 57.447 43.478 0.00 0.00 45.85 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.