Multiple sequence alignment - TraesCS4A01G395100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G395100 chr4A 100.000 3751 0 0 1 3751 669903107 669906857 0.000000e+00 6927.0
1 TraesCS4A01G395100 chr4A 92.334 587 41 4 2748 3331 29613254 29613839 0.000000e+00 832.0
2 TraesCS4A01G395100 chr4A 93.256 430 28 1 3323 3751 29622559 29622988 1.900000e-177 632.0
3 TraesCS4A01G395100 chr4A 96.450 169 5 1 1682 1849 610810915 610810747 1.030000e-70 278.0
4 TraesCS4A01G395100 chr3B 98.612 1009 10 2 2747 3751 738371258 738370250 0.000000e+00 1783.0
5 TraesCS4A01G395100 chr3B 95.906 171 5 2 1681 1849 734667032 734667202 3.690000e-70 276.0
6 TraesCS4A01G395100 chr3B 86.806 144 16 1 1888 2031 746810552 746810692 1.390000e-34 158.0
7 TraesCS4A01G395100 chr3B 85.135 148 19 2 1888 2035 744626601 744626457 8.390000e-32 148.0
8 TraesCS4A01G395100 chr3B 85.567 97 4 5 1226 1321 746809834 746809921 3.990000e-15 93.5
9 TraesCS4A01G395100 chr3B 80.702 114 19 3 173 284 568280715 568280827 6.680000e-13 86.1
10 TraesCS4A01G395100 chrUn 98.411 1007 12 2 2749 3751 88102985 88103991 0.000000e+00 1768.0
11 TraesCS4A01G395100 chrUn 97.026 269 2 4 2744 3008 88107877 88108143 7.390000e-122 448.0
12 TraesCS4A01G395100 chrUn 81.319 91 14 3 13 103 28611283 28611196 1.870000e-08 71.3
13 TraesCS4A01G395100 chr5A 98.113 1007 15 2 2749 3751 702852735 702851729 0.000000e+00 1751.0
14 TraesCS4A01G395100 chr2B 93.948 1008 56 4 2748 3751 326257042 326258048 0.000000e+00 1519.0
15 TraesCS4A01G395100 chr2B 94.944 178 7 2 1674 1849 556659212 556659035 1.030000e-70 278.0
16 TraesCS4A01G395100 chr2B 83.333 96 14 2 13 107 655785303 655785397 1.860000e-13 87.9
17 TraesCS4A01G395100 chr5B 93.695 1015 51 6 2749 3751 712900433 712899420 0.000000e+00 1507.0
18 TraesCS4A01G395100 chr5B 96.988 166 4 1 1687 1851 685434306 685434141 1.030000e-70 278.0
19 TraesCS4A01G395100 chr7D 86.352 1165 81 44 2 1137 54363691 54364806 0.000000e+00 1199.0
20 TraesCS4A01G395100 chr7D 89.753 849 59 12 1919 2748 54365640 54366479 0.000000e+00 1061.0
21 TraesCS4A01G395100 chr7D 92.130 216 17 0 1442 1657 54365328 54365543 4.710000e-79 305.0
22 TraesCS4A01G395100 chr7D 79.167 96 17 3 13 107 166515423 166515516 3.130000e-06 63.9
23 TraesCS4A01G395100 chr7D 100.000 29 0 0 116 144 497581514 497581542 2.000000e-03 54.7
24 TraesCS4A01G395100 chr7A 84.785 1137 95 41 173 1271 57871277 57872373 0.000000e+00 1070.0
25 TraesCS4A01G395100 chr7A 91.104 652 35 11 2116 2748 57873722 57874369 0.000000e+00 861.0
26 TraesCS4A01G395100 chr7A 90.987 233 17 3 1426 1654 57873067 57873299 1.010000e-80 311.0
27 TraesCS4A01G395100 chr7A 91.071 168 8 3 1918 2082 57873402 57873565 1.750000e-53 220.0
28 TraesCS4A01G395100 chr1A 91.679 697 55 2 2747 3440 211991923 211992619 0.000000e+00 963.0
29 TraesCS4A01G395100 chr1A 94.481 308 17 0 3442 3749 212004427 212004734 3.390000e-130 475.0
30 TraesCS4A01G395100 chr1A 95.882 170 6 1 1681 1849 526575691 526575522 1.330000e-69 274.0
31 TraesCS4A01G395100 chr1A 85.294 102 9 6 186 284 357124509 357124411 2.380000e-17 100.0
32 TraesCS4A01G395100 chr1A 82.178 101 9 7 187 282 583177023 583176927 1.120000e-10 78.7
33 TraesCS4A01G395100 chr6A 92.208 616 40 6 2749 3358 27518426 27519039 0.000000e+00 865.0
34 TraesCS4A01G395100 chr7B 76.547 695 151 10 2999 3687 614515445 614516133 1.650000e-98 370.0
35 TraesCS4A01G395100 chr3D 87.748 302 34 3 2437 2738 560357308 560357010 2.140000e-92 350.0
36 TraesCS4A01G395100 chr3D 85.714 147 18 1 1888 2034 560358366 560358223 6.490000e-33 152.0
37 TraesCS4A01G395100 chr6B 97.561 164 3 1 1687 1849 260545090 260544927 2.850000e-71 279.0
38 TraesCS4A01G395100 chr6B 89.767 215 12 10 1679 1884 703802101 703801888 2.220000e-67 267.0
39 TraesCS4A01G395100 chr6B 72.107 484 117 15 3005 3479 713864655 713865129 3.040000e-26 130.0
40 TraesCS4A01G395100 chr6B 85.714 105 14 1 176 279 478904054 478904158 3.960000e-20 110.0
41 TraesCS4A01G395100 chr6B 83.000 100 17 0 2 101 173027276 173027375 1.430000e-14 91.6
42 TraesCS4A01G395100 chr1B 95.930 172 5 2 1680 1849 67054056 67053885 1.030000e-70 278.0
43 TraesCS4A01G395100 chr2A 95.376 173 6 2 1680 1850 113822287 113822459 1.330000e-69 274.0
44 TraesCS4A01G395100 chr2A 81.818 99 17 1 172 270 617429605 617429508 8.640000e-12 82.4
45 TraesCS4A01G395100 chr3A 86.395 147 17 1 1888 2034 696482674 696482531 1.390000e-34 158.0
46 TraesCS4A01G395100 chr3A 85.417 96 5 2 1229 1324 696483391 696483305 1.430000e-14 91.6
47 TraesCS4A01G395100 chr3A 96.226 53 2 0 2686 2738 696481623 696481571 1.860000e-13 87.9
48 TraesCS4A01G395100 chr2D 83.516 91 11 2 180 268 315487863 315487951 8.640000e-12 82.4
49 TraesCS4A01G395100 chr4D 84.615 78 12 0 187 264 484105347 484105424 1.120000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G395100 chr4A 669903107 669906857 3750 False 6927.0 6927 100.000000 1 3751 1 chr4A.!!$F3 3750
1 TraesCS4A01G395100 chr4A 29613254 29613839 585 False 832.0 832 92.334000 2748 3331 1 chr4A.!!$F1 583
2 TraesCS4A01G395100 chr3B 738370250 738371258 1008 True 1783.0 1783 98.612000 2747 3751 1 chr3B.!!$R1 1004
3 TraesCS4A01G395100 chrUn 88102985 88108143 5158 False 1108.0 1768 97.718500 2744 3751 2 chrUn.!!$F1 1007
4 TraesCS4A01G395100 chr5A 702851729 702852735 1006 True 1751.0 1751 98.113000 2749 3751 1 chr5A.!!$R1 1002
5 TraesCS4A01G395100 chr2B 326257042 326258048 1006 False 1519.0 1519 93.948000 2748 3751 1 chr2B.!!$F1 1003
6 TraesCS4A01G395100 chr5B 712899420 712900433 1013 True 1507.0 1507 93.695000 2749 3751 1 chr5B.!!$R2 1002
7 TraesCS4A01G395100 chr7D 54363691 54366479 2788 False 855.0 1199 89.411667 2 2748 3 chr7D.!!$F3 2746
8 TraesCS4A01G395100 chr7A 57871277 57874369 3092 False 615.5 1070 89.486750 173 2748 4 chr7A.!!$F1 2575
9 TraesCS4A01G395100 chr1A 211991923 211992619 696 False 963.0 963 91.679000 2747 3440 1 chr1A.!!$F1 693
10 TraesCS4A01G395100 chr6A 27518426 27519039 613 False 865.0 865 92.208000 2749 3358 1 chr6A.!!$F1 609
11 TraesCS4A01G395100 chr7B 614515445 614516133 688 False 370.0 370 76.547000 2999 3687 1 chr7B.!!$F1 688
12 TraesCS4A01G395100 chr3D 560357010 560358366 1356 True 251.0 350 86.731000 1888 2738 2 chr3D.!!$R1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 500 0.107848 CCGGGTGGATGAACTGTACC 60.108 60.0 0.0 0.0 37.49 3.34 F
947 984 0.179045 CCGGTGGGTCATTGAGGATC 60.179 60.0 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2697 0.115745 AGGTACTCCCTCCGTTTCCA 59.884 55.0 0.00 0.0 40.71 3.53 R
2786 4351 0.036164 CCCCACTGTGGATGAACGAA 59.964 55.0 27.94 0.0 40.96 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.346300 TGATCTACACTTCTCTTTATCGATGAC 58.654 37.037 8.54 0.00 0.00 3.06
77 78 3.177194 TTCTGGTGCACTGGTCCCG 62.177 63.158 17.98 0.00 0.00 5.14
101 102 2.102420 GGGCCTTAGCACAACAACTTTT 59.898 45.455 0.84 0.00 44.19 2.27
128 129 1.207089 TCCAGTGCTACCTTCATTCCG 59.793 52.381 0.00 0.00 0.00 4.30
129 130 1.207089 CCAGTGCTACCTTCATTCCGA 59.793 52.381 0.00 0.00 0.00 4.55
144 145 9.884465 CCTTCATTCCGAAATATAAGATGTTTC 57.116 33.333 0.00 0.11 37.12 2.78
184 185 0.679640 CCAAACATTCTGCCCGGCTA 60.680 55.000 11.61 0.00 0.00 3.93
205 206 0.181350 GGTGAAGGAAGGGCGATGAT 59.819 55.000 0.00 0.00 0.00 2.45
214 215 1.595109 GGGCGATGATGACGATGCA 60.595 57.895 0.00 0.00 0.00 3.96
216 217 1.153597 GGCGATGATGACGATGCACA 61.154 55.000 0.00 0.00 0.00 4.57
260 261 3.965694 AGTCGTCATTAGGTGGTCTACT 58.034 45.455 0.00 0.00 0.00 2.57
366 367 4.853924 ATTTCCAACAGCTAACACTTGG 57.146 40.909 0.00 0.00 35.42 3.61
374 375 2.880890 CAGCTAACACTTGGCACTTCTT 59.119 45.455 0.00 0.00 39.92 2.52
485 500 0.107848 CCGGGTGGATGAACTGTACC 60.108 60.000 0.00 0.00 37.49 3.34
493 509 1.198759 ATGAACTGTACCCACGCCCT 61.199 55.000 0.00 0.00 0.00 5.19
511 527 3.690460 CCCTCCTAAATGACTTGTTGCT 58.310 45.455 0.00 0.00 0.00 3.91
538 554 1.468520 CCATGAACCATCGGTGTCAAC 59.531 52.381 0.00 0.00 35.34 3.18
601 617 7.279536 CCATTATCCTGCACATGATATACAGTC 59.720 40.741 0.00 0.00 0.00 3.51
621 637 6.817140 ACAGTCGTTGGATTAATTAGAAGACC 59.183 38.462 9.28 0.00 0.00 3.85
626 642 6.074463 CGTTGGATTAATTAGAAGACCGCTAC 60.074 42.308 0.00 0.00 0.00 3.58
627 643 6.726490 TGGATTAATTAGAAGACCGCTACT 57.274 37.500 0.00 0.00 0.00 2.57
628 644 7.828508 TGGATTAATTAGAAGACCGCTACTA 57.171 36.000 0.00 0.00 0.00 1.82
658 674 1.617740 GCGTCTTGCAGTTAAATGCC 58.382 50.000 23.74 8.43 45.91 4.40
670 686 2.367241 GTTAAATGCCCAACACCCAACT 59.633 45.455 0.00 0.00 0.00 3.16
672 688 1.757423 AATGCCCAACACCCAACTGC 61.757 55.000 0.00 0.00 0.00 4.40
701 717 4.751767 ATTGTCAATCAGGAGAGGAGAC 57.248 45.455 0.00 0.00 0.00 3.36
819 856 2.030562 GCAGTGGCAGTACGTGGT 59.969 61.111 0.00 0.00 40.72 4.16
873 910 2.515757 TGCAAGCAACCACGCTCA 60.516 55.556 0.00 0.00 42.89 4.26
894 931 0.949105 GCCAACTACCCGTGTCTGTG 60.949 60.000 0.00 0.00 0.00 3.66
898 935 1.629043 ACTACCCGTGTCTGTGATGT 58.371 50.000 0.00 0.00 0.00 3.06
899 936 1.968493 ACTACCCGTGTCTGTGATGTT 59.032 47.619 0.00 0.00 0.00 2.71
900 937 2.029290 ACTACCCGTGTCTGTGATGTTC 60.029 50.000 0.00 0.00 0.00 3.18
911 948 2.606725 CTGTGATGTTCTTCCATCTCGC 59.393 50.000 0.00 0.00 41.47 5.03
916 953 1.281867 TGTTCTTCCATCTCGCCCAAT 59.718 47.619 0.00 0.00 0.00 3.16
925 962 6.806668 TCCATCTCGCCCAATGATATATAA 57.193 37.500 0.00 0.00 0.00 0.98
929 966 5.368145 TCTCGCCCAATGATATATAATGCC 58.632 41.667 0.00 0.00 0.00 4.40
936 973 5.192927 CAATGATATATAATGCCGGTGGGT 58.807 41.667 1.90 0.00 34.97 4.51
937 974 4.481368 TGATATATAATGCCGGTGGGTC 57.519 45.455 1.90 0.00 34.97 4.46
938 975 3.841255 TGATATATAATGCCGGTGGGTCA 59.159 43.478 1.90 0.00 34.97 4.02
939 976 4.473196 TGATATATAATGCCGGTGGGTCAT 59.527 41.667 1.90 0.00 33.35 3.06
940 977 3.806949 ATATAATGCCGGTGGGTCATT 57.193 42.857 1.90 6.39 40.62 2.57
941 978 1.691196 ATAATGCCGGTGGGTCATTG 58.309 50.000 12.79 0.00 39.10 2.82
942 979 0.621082 TAATGCCGGTGGGTCATTGA 59.379 50.000 12.79 0.00 39.10 2.57
943 980 0.680921 AATGCCGGTGGGTCATTGAG 60.681 55.000 1.90 0.00 38.09 3.02
944 981 2.438434 GCCGGTGGGTCATTGAGG 60.438 66.667 1.90 0.00 34.97 3.86
945 982 2.966732 GCCGGTGGGTCATTGAGGA 61.967 63.158 1.90 0.00 34.97 3.71
946 983 1.915228 CCGGTGGGTCATTGAGGAT 59.085 57.895 0.00 0.00 0.00 3.24
947 984 0.179045 CCGGTGGGTCATTGAGGATC 60.179 60.000 0.00 0.00 0.00 3.36
960 997 3.986996 TGAGGATCATGTTTCAGAGCA 57.013 42.857 0.00 0.00 42.56 4.26
961 998 3.603532 TGAGGATCATGTTTCAGAGCAC 58.396 45.455 0.00 0.00 42.56 4.40
962 999 3.262660 TGAGGATCATGTTTCAGAGCACT 59.737 43.478 0.00 0.00 42.56 4.40
963 1000 3.607741 AGGATCATGTTTCAGAGCACTG 58.392 45.455 4.57 4.57 44.66 3.66
964 1001 2.097142 GGATCATGTTTCAGAGCACTGC 59.903 50.000 6.24 0.00 43.17 4.40
965 1002 2.259266 TCATGTTTCAGAGCACTGCA 57.741 45.000 6.24 0.00 43.17 4.41
966 1003 2.148768 TCATGTTTCAGAGCACTGCAG 58.851 47.619 13.48 13.48 43.17 4.41
967 1004 1.878088 CATGTTTCAGAGCACTGCAGT 59.122 47.619 15.25 15.25 43.17 4.40
978 1015 1.907739 ACTGCAGTGTCAGTGTGGT 59.092 52.632 20.97 5.83 44.88 4.16
979 1016 0.253044 ACTGCAGTGTCAGTGTGGTT 59.747 50.000 20.97 0.00 44.88 3.67
982 1019 0.378257 GCAGTGTCAGTGTGGTTGTG 59.622 55.000 9.41 0.00 0.00 3.33
985 1025 1.453015 TGTCAGTGTGGTTGTGGGC 60.453 57.895 0.00 0.00 0.00 5.36
986 1026 1.453015 GTCAGTGTGGTTGTGGGCA 60.453 57.895 0.00 0.00 0.00 5.36
987 1027 1.152984 TCAGTGTGGTTGTGGGCAG 60.153 57.895 0.00 0.00 0.00 4.85
1092 1132 3.500343 ACAGCAGCAGGAAAAGGTAATT 58.500 40.909 0.00 0.00 0.00 1.40
1093 1133 3.256631 ACAGCAGCAGGAAAAGGTAATTG 59.743 43.478 0.00 0.00 0.00 2.32
1096 1136 3.255642 GCAGCAGGAAAAGGTAATTGACA 59.744 43.478 0.00 0.00 0.00 3.58
1097 1137 4.261994 GCAGCAGGAAAAGGTAATTGACAA 60.262 41.667 0.00 0.00 0.00 3.18
1098 1138 5.464168 CAGCAGGAAAAGGTAATTGACAAG 58.536 41.667 0.00 0.00 0.00 3.16
1108 1148 6.926630 AGGTAATTGACAAGTCTTCTCTCT 57.073 37.500 1.53 0.00 0.00 3.10
1150 1190 4.972733 TGGCCATGGCTGCGTGTT 62.973 61.111 34.70 0.00 41.60 3.32
1163 1210 0.179184 GCGTGTTGTGTTTCCGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
1164 1211 1.062294 GCGTGTTGTGTTTCCGTTGTA 59.938 47.619 0.00 0.00 0.00 2.41
1172 1219 4.589252 TGTGTTTCCGTTGTATGTTTTCG 58.411 39.130 0.00 0.00 0.00 3.46
1182 1229 5.959527 CGTTGTATGTTTTCGATCCAATCTG 59.040 40.000 0.00 0.00 0.00 2.90
1187 1234 7.822334 TGTATGTTTTCGATCCAATCTGTAAGT 59.178 33.333 0.00 0.00 33.76 2.24
1202 1318 1.069227 GTAAGTCGCAGCTTTTGTGGG 60.069 52.381 0.00 0.00 37.88 4.61
1224 1354 4.065088 GTGGAACTGCAGTACAATTCTCA 58.935 43.478 22.01 10.56 34.89 3.27
1225 1355 4.697352 GTGGAACTGCAGTACAATTCTCAT 59.303 41.667 22.01 0.00 34.89 2.90
1226 1356 5.874810 GTGGAACTGCAGTACAATTCTCATA 59.125 40.000 22.01 2.40 34.89 2.15
1227 1357 6.540189 GTGGAACTGCAGTACAATTCTCATAT 59.460 38.462 22.01 0.00 34.89 1.78
1275 1405 0.889994 TGGACACTGCAAATCCATGC 59.110 50.000 8.76 0.00 46.58 4.06
1293 1423 3.918294 TGCATGTGGATCTGATCTTCA 57.082 42.857 16.61 15.05 0.00 3.02
1308 1438 4.867047 TGATCTTCAAGTGAGCTCGAATTC 59.133 41.667 9.64 7.10 0.00 2.17
1311 1441 3.026630 TCAAGTGAGCTCGAATTCGTT 57.973 42.857 25.93 13.75 40.80 3.85
1314 1444 2.877335 AGTGAGCTCGAATTCGTTACC 58.123 47.619 25.93 14.75 40.80 2.85
1316 1446 2.599082 GTGAGCTCGAATTCGTTACCAG 59.401 50.000 25.93 16.79 40.80 4.00
1357 1625 7.034685 TCTGAATAAAACATGGATGCAGATG 57.965 36.000 0.00 0.00 0.00 2.90
1372 1640 3.602483 GCAGATGCACCCATTGATTTTT 58.398 40.909 0.00 0.00 41.59 1.94
1377 1645 5.935789 AGATGCACCCATTGATTTTTGAAAG 59.064 36.000 0.00 0.00 0.00 2.62
1378 1646 5.033589 TGCACCCATTGATTTTTGAAAGT 57.966 34.783 0.00 0.00 0.00 2.66
1380 1648 6.586344 TGCACCCATTGATTTTTGAAAGTAA 58.414 32.000 0.00 0.00 0.00 2.24
1381 1649 7.222872 TGCACCCATTGATTTTTGAAAGTAAT 58.777 30.769 0.00 0.00 0.00 1.89
1382 1650 7.718753 TGCACCCATTGATTTTTGAAAGTAATT 59.281 29.630 0.00 0.00 0.00 1.40
1407 2067 9.643693 TTAACTATAGTAACTTTTCACGGGAAG 57.356 33.333 5.65 0.00 33.82 3.46
1408 2068 7.472334 ACTATAGTAACTTTTCACGGGAAGA 57.528 36.000 2.75 0.00 33.82 2.87
1409 2069 7.545489 ACTATAGTAACTTTTCACGGGAAGAG 58.455 38.462 15.92 15.92 40.21 2.85
1411 2071 5.485209 AGTAACTTTTCACGGGAAGAGAT 57.515 39.130 23.51 14.73 37.41 2.75
1414 2074 7.447594 AGTAACTTTTCACGGGAAGAGATTAA 58.552 34.615 23.51 2.36 37.41 1.40
1415 2075 6.555812 AACTTTTCACGGGAAGAGATTAAC 57.444 37.500 23.51 0.00 37.41 2.01
1416 2076 5.866207 ACTTTTCACGGGAAGAGATTAACT 58.134 37.500 23.51 0.00 37.41 2.24
1417 2077 7.001099 ACTTTTCACGGGAAGAGATTAACTA 57.999 36.000 23.51 0.00 37.41 2.24
1418 2078 6.872547 ACTTTTCACGGGAAGAGATTAACTAC 59.127 38.462 23.51 0.00 37.41 2.73
1419 2079 6.600882 TTTCACGGGAAGAGATTAACTACT 57.399 37.500 0.00 0.00 33.82 2.57
1488 2353 3.775654 GAGGTGCGGGGTCTCCTG 61.776 72.222 0.00 0.00 42.40 3.86
1510 2375 1.539929 GCAATCTGACGGAGGAGATGG 60.540 57.143 0.00 0.00 32.29 3.51
1567 2432 4.821589 GGGCGAGGAACTGGAGCG 62.822 72.222 0.00 0.00 41.55 5.03
1569 2434 4.742201 GCGAGGAACTGGAGCGCA 62.742 66.667 11.47 0.00 45.30 6.09
1652 2517 3.259123 GCAATTTCCTGGGTCAGTCAAAT 59.741 43.478 0.00 0.00 0.00 2.32
1657 2522 4.021102 TCCTGGGTCAGTCAAATTTCTC 57.979 45.455 0.00 0.00 0.00 2.87
1658 2523 3.394274 TCCTGGGTCAGTCAAATTTCTCA 59.606 43.478 0.00 0.00 0.00 3.27
1659 2524 4.043310 TCCTGGGTCAGTCAAATTTCTCAT 59.957 41.667 0.00 0.00 0.00 2.90
1660 2525 5.250543 TCCTGGGTCAGTCAAATTTCTCATA 59.749 40.000 0.00 0.00 0.00 2.15
1661 2526 5.587844 CCTGGGTCAGTCAAATTTCTCATAG 59.412 44.000 0.00 0.00 0.00 2.23
1665 2530 8.988060 TGGGTCAGTCAAATTTCTCATAGTATA 58.012 33.333 0.00 0.00 0.00 1.47
1673 2538 9.959721 TCAAATTTCTCATAGTATATAAGCCCC 57.040 33.333 0.00 0.00 0.00 5.80
1674 2539 9.965902 CAAATTTCTCATAGTATATAAGCCCCT 57.034 33.333 0.00 0.00 0.00 4.79
1691 2556 6.689663 AGCCCCTCTTATAAATTCTACTCC 57.310 41.667 0.00 0.00 0.00 3.85
1692 2557 5.548446 AGCCCCTCTTATAAATTCTACTCCC 59.452 44.000 0.00 0.00 0.00 4.30
1693 2558 5.548446 GCCCCTCTTATAAATTCTACTCCCT 59.452 44.000 0.00 0.00 0.00 4.20
1694 2559 6.295973 GCCCCTCTTATAAATTCTACTCCCTC 60.296 46.154 0.00 0.00 0.00 4.30
1695 2560 6.213802 CCCCTCTTATAAATTCTACTCCCTCC 59.786 46.154 0.00 0.00 0.00 4.30
1696 2561 6.071278 CCCTCTTATAAATTCTACTCCCTCCG 60.071 46.154 0.00 0.00 0.00 4.63
1697 2562 6.494146 CCTCTTATAAATTCTACTCCCTCCGT 59.506 42.308 0.00 0.00 0.00 4.69
1698 2563 7.015389 CCTCTTATAAATTCTACTCCCTCCGTT 59.985 40.741 0.00 0.00 0.00 4.44
1699 2564 7.949434 TCTTATAAATTCTACTCCCTCCGTTC 58.051 38.462 0.00 0.00 0.00 3.95
1700 2565 3.908643 AAATTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
1701 2566 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
1702 2567 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
1703 2568 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
1704 2569 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1705 2570 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1706 2571 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1707 2572 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
1708 2573 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1709 2574 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1710 2575 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1711 2576 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1712 2577 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1713 2578 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1714 2579 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1715 2580 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1716 2581 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1717 2582 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1718 2583 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1719 2584 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1720 2585 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
1721 2586 9.635520 CGTTCCTAAATACTTGTCTTTCTAGAA 57.364 33.333 0.00 0.00 30.65 2.10
1744 2609 8.504005 AGAAATTTCAAAAGTGACTACATACGG 58.496 33.333 19.99 0.00 31.90 4.02
1745 2610 7.739498 AATTTCAAAAGTGACTACATACGGT 57.261 32.000 0.00 0.00 31.90 4.83
1746 2611 6.533819 TTTCAAAAGTGACTACATACGGTG 57.466 37.500 0.00 0.00 31.90 4.94
1747 2612 3.991773 TCAAAAGTGACTACATACGGTGC 59.008 43.478 0.00 0.00 0.00 5.01
1748 2613 3.671008 AAAGTGACTACATACGGTGCA 57.329 42.857 0.00 0.00 0.00 4.57
1749 2614 3.671008 AAGTGACTACATACGGTGCAA 57.329 42.857 0.00 0.00 0.00 4.08
1750 2615 3.671008 AGTGACTACATACGGTGCAAA 57.329 42.857 0.00 0.00 0.00 3.68
1751 2616 3.997762 AGTGACTACATACGGTGCAAAA 58.002 40.909 0.00 0.00 0.00 2.44
1752 2617 4.575885 AGTGACTACATACGGTGCAAAAT 58.424 39.130 0.00 0.00 0.00 1.82
1753 2618 4.391830 AGTGACTACATACGGTGCAAAATG 59.608 41.667 0.00 0.00 0.00 2.32
1754 2619 4.390603 GTGACTACATACGGTGCAAAATGA 59.609 41.667 0.00 0.00 0.00 2.57
1755 2620 4.629634 TGACTACATACGGTGCAAAATGAG 59.370 41.667 0.00 0.00 0.00 2.90
1756 2621 4.575885 ACTACATACGGTGCAAAATGAGT 58.424 39.130 0.00 0.00 0.00 3.41
1757 2622 3.829886 ACATACGGTGCAAAATGAGTG 57.170 42.857 0.00 0.00 0.00 3.51
1758 2623 3.407698 ACATACGGTGCAAAATGAGTGA 58.592 40.909 0.00 0.00 0.00 3.41
1759 2624 3.818210 ACATACGGTGCAAAATGAGTGAA 59.182 39.130 0.00 0.00 0.00 3.18
1760 2625 4.458989 ACATACGGTGCAAAATGAGTGAAT 59.541 37.500 0.00 0.00 0.00 2.57
1761 2626 3.559238 ACGGTGCAAAATGAGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
1762 2627 3.149196 ACGGTGCAAAATGAGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
1763 2628 4.323417 ACGGTGCAAAATGAGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
1764 2629 4.154195 ACGGTGCAAAATGAGTGAATCTAC 59.846 41.667 0.00 0.00 0.00 2.59
1765 2630 4.154015 CGGTGCAAAATGAGTGAATCTACA 59.846 41.667 0.00 0.00 0.00 2.74
1766 2631 5.393962 GGTGCAAAATGAGTGAATCTACAC 58.606 41.667 0.00 0.00 40.60 2.90
1801 2666 8.631480 TGTCTACATACATCCGTATATTGAGT 57.369 34.615 0.00 0.00 36.11 3.41
1802 2667 8.727910 TGTCTACATACATCCGTATATTGAGTC 58.272 37.037 0.00 0.00 36.11 3.36
1803 2668 8.182881 GTCTACATACATCCGTATATTGAGTCC 58.817 40.741 0.00 0.00 36.11 3.85
1804 2669 6.911250 ACATACATCCGTATATTGAGTCCA 57.089 37.500 0.00 0.00 36.11 4.02
1805 2670 7.482169 ACATACATCCGTATATTGAGTCCAT 57.518 36.000 0.00 0.00 36.11 3.41
1806 2671 7.907389 ACATACATCCGTATATTGAGTCCATT 58.093 34.615 0.00 0.00 36.11 3.16
1807 2672 8.375506 ACATACATCCGTATATTGAGTCCATTT 58.624 33.333 0.00 0.00 36.11 2.32
1808 2673 8.659491 CATACATCCGTATATTGAGTCCATTTG 58.341 37.037 0.00 0.00 36.11 2.32
1809 2674 6.826668 ACATCCGTATATTGAGTCCATTTGA 58.173 36.000 0.00 0.00 0.00 2.69
1810 2675 7.279615 ACATCCGTATATTGAGTCCATTTGAA 58.720 34.615 0.00 0.00 0.00 2.69
1811 2676 7.773224 ACATCCGTATATTGAGTCCATTTGAAA 59.227 33.333 0.00 0.00 0.00 2.69
1812 2677 8.786898 CATCCGTATATTGAGTCCATTTGAAAT 58.213 33.333 0.00 0.00 0.00 2.17
1813 2678 8.153479 TCCGTATATTGAGTCCATTTGAAATG 57.847 34.615 10.84 10.84 0.00 2.32
1814 2679 6.857964 CCGTATATTGAGTCCATTTGAAATGC 59.142 38.462 12.26 0.23 0.00 3.56
1815 2680 6.857964 CGTATATTGAGTCCATTTGAAATGCC 59.142 38.462 12.26 5.23 0.00 4.40
1816 2681 7.255242 CGTATATTGAGTCCATTTGAAATGCCT 60.255 37.037 12.26 9.70 0.00 4.75
1817 2682 9.066892 GTATATTGAGTCCATTTGAAATGCCTA 57.933 33.333 12.26 0.00 0.00 3.93
1818 2683 5.902613 TTGAGTCCATTTGAAATGCCTAG 57.097 39.130 12.26 0.00 0.00 3.02
1819 2684 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
1820 2685 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
1821 2686 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
1822 2687 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
1823 2688 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
1824 2689 6.894103 AGTCCATTTGAAATGCCTAGAAAGAT 59.106 34.615 12.26 0.00 0.00 2.40
1825 2690 8.055181 AGTCCATTTGAAATGCCTAGAAAGATA 58.945 33.333 12.26 0.00 0.00 1.98
1826 2691 8.686334 GTCCATTTGAAATGCCTAGAAAGATAA 58.314 33.333 12.26 0.00 0.00 1.75
1827 2692 8.906867 TCCATTTGAAATGCCTAGAAAGATAAG 58.093 33.333 12.26 0.00 0.00 1.73
1828 2693 8.689972 CCATTTGAAATGCCTAGAAAGATAAGT 58.310 33.333 12.26 0.00 0.00 2.24
1835 2700 9.920946 AAATGCCTAGAAAGATAAGTATTTGGA 57.079 29.630 0.00 0.00 0.00 3.53
1836 2701 9.920946 AATGCCTAGAAAGATAAGTATTTGGAA 57.079 29.630 0.00 0.00 0.00 3.53
1837 2702 9.920946 ATGCCTAGAAAGATAAGTATTTGGAAA 57.079 29.630 0.00 0.00 0.00 3.13
1838 2703 9.174166 TGCCTAGAAAGATAAGTATTTGGAAAC 57.826 33.333 0.00 0.00 0.00 2.78
1839 2704 8.336080 GCCTAGAAAGATAAGTATTTGGAAACG 58.664 37.037 0.00 0.00 0.00 3.60
1840 2705 8.827677 CCTAGAAAGATAAGTATTTGGAAACGG 58.172 37.037 0.00 0.00 0.00 4.44
1841 2706 9.595823 CTAGAAAGATAAGTATTTGGAAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1842 2707 8.494016 AGAAAGATAAGTATTTGGAAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1843 2708 7.553044 AGAAAGATAAGTATTTGGAAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1844 2709 5.681639 AGATAAGTATTTGGAAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1845 2710 5.427481 AGATAAGTATTTGGAAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1846 2711 3.629142 AGTATTTGGAAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1848 2713 4.098894 AGTATTTGGAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1870 2735 7.471041 AGTACCTCCAAGTATCTGCTCATATA 58.529 38.462 0.00 0.00 0.00 0.86
1878 2743 6.070897 AGTATCTGCTCATATATAGCTGCG 57.929 41.667 0.00 0.00 40.73 5.18
1882 2748 4.400567 TCTGCTCATATATAGCTGCGTGAT 59.599 41.667 0.00 0.00 40.73 3.06
1885 2751 4.867047 GCTCATATATAGCTGCGTGATTGT 59.133 41.667 0.00 0.00 37.01 2.71
1886 2752 5.220359 GCTCATATATAGCTGCGTGATTGTG 60.220 44.000 0.00 0.00 37.01 3.33
1897 2763 2.559872 CGTGATTGTGTTGTGTAAGCG 58.440 47.619 0.00 0.00 0.00 4.68
1909 2777 2.885266 TGTGTAAGCGACTCTTCTCTGT 59.115 45.455 0.00 0.00 36.25 3.41
1911 2779 4.202121 TGTGTAAGCGACTCTTCTCTGTTT 60.202 41.667 0.00 0.00 36.25 2.83
1915 2783 2.812591 AGCGACTCTTCTCTGTTTCGTA 59.187 45.455 0.00 0.00 0.00 3.43
1916 2784 3.252701 AGCGACTCTTCTCTGTTTCGTAA 59.747 43.478 0.00 0.00 0.00 3.18
1941 2819 1.363744 GCAGGACGACATTCCAGAAG 58.636 55.000 0.00 0.00 38.25 2.85
2040 2918 9.849166 ACGTACCAATGAAGGTAATTAATTTTG 57.151 29.630 5.91 3.10 45.24 2.44
2041 2919 8.803799 CGTACCAATGAAGGTAATTAATTTTGC 58.196 33.333 5.91 0.00 45.24 3.68
2090 3087 4.883585 TCAATCCATTAGCAGACATTGGTC 59.116 41.667 0.00 0.00 44.66 4.02
2096 3093 5.589855 CCATTAGCAGACATTGGTCATTACA 59.410 40.000 0.00 0.00 46.80 2.41
2097 3094 6.238566 CCATTAGCAGACATTGGTCATTACAG 60.239 42.308 0.00 0.00 46.80 2.74
2098 3095 3.012518 AGCAGACATTGGTCATTACAGC 58.987 45.455 0.00 0.00 46.80 4.40
2099 3096 2.098117 GCAGACATTGGTCATTACAGCC 59.902 50.000 0.00 0.00 46.80 4.85
2101 3098 4.012374 CAGACATTGGTCATTACAGCCTT 58.988 43.478 0.00 0.00 46.80 4.35
2102 3099 5.185454 CAGACATTGGTCATTACAGCCTTA 58.815 41.667 0.00 0.00 46.80 2.69
2103 3100 5.065218 CAGACATTGGTCATTACAGCCTTAC 59.935 44.000 0.00 0.00 46.80 2.34
2104 3101 4.917385 ACATTGGTCATTACAGCCTTACA 58.083 39.130 0.00 0.00 0.00 2.41
2105 3102 4.943705 ACATTGGTCATTACAGCCTTACAG 59.056 41.667 0.00 0.00 0.00 2.74
2129 3172 5.354792 GGAACACCAACACTAACTTGTACAA 59.645 40.000 8.28 8.28 0.00 2.41
2131 3174 5.247084 ACACCAACACTAACTTGTACAACA 58.753 37.500 3.59 0.00 0.00 3.33
2132 3175 5.706369 ACACCAACACTAACTTGTACAACAA 59.294 36.000 3.59 0.00 36.54 2.83
2162 3205 2.071778 AAGTTTCAGCCAAGGAGCAA 57.928 45.000 0.00 0.00 34.23 3.91
2190 3233 0.755686 CCTGGTGTATCTCCTGGAGC 59.244 60.000 19.08 5.87 43.71 4.70
2207 3250 1.154225 GCATTTCGCCACCAACTCG 60.154 57.895 0.00 0.00 32.94 4.18
2345 3388 1.664965 GGTGATAGGCGTGGCGATC 60.665 63.158 9.12 9.12 0.00 3.69
2360 3403 1.327690 CGATCCCTTTCGACCCTCCA 61.328 60.000 0.00 0.00 41.62 3.86
2372 3415 2.749621 CGACCCTCCAAGGATTTTTGAG 59.250 50.000 0.00 0.00 37.67 3.02
2378 3421 5.047731 CCCTCCAAGGATTTTTGAGTCTTTC 60.048 44.000 0.00 0.00 37.67 2.62
2389 3439 7.510549 TTTTTGAGTCTTTCTGGAAGGTATG 57.489 36.000 0.00 0.00 35.98 2.39
2404 3456 6.772716 TGGAAGGTATGCAAAGATTCTAATCC 59.227 38.462 0.00 0.00 36.04 3.01
2408 3460 8.000780 AGGTATGCAAAGATTCTAATCCAAAC 57.999 34.615 0.00 0.00 36.04 2.93
2412 3464 7.994425 TGCAAAGATTCTAATCCAAACTGTA 57.006 32.000 0.00 0.00 36.04 2.74
2450 4008 1.560860 GCCGTCTTGTGAGAGTGTGC 61.561 60.000 0.00 0.00 31.07 4.57
2478 4038 8.567948 TCCTGTTTTATCAGTGAAAATCTCAAC 58.432 33.333 0.00 0.00 35.22 3.18
2589 4153 2.260869 GCAAACAAGCCGGAGAGCA 61.261 57.895 5.05 0.00 34.23 4.26
2630 4194 3.007506 TCTTTGACTTGGATACGCTGGAA 59.992 43.478 0.00 0.00 42.51 3.53
2738 4302 5.482878 AGGAGCATCAAAAGATTCAAATGGT 59.517 36.000 0.00 0.00 36.25 3.55
2786 4351 1.066716 GGGTTGCAATGCATCACACAT 60.067 47.619 9.39 0.00 38.76 3.21
2948 4520 2.124570 GCGGTGGATGCATGGAGT 60.125 61.111 2.46 0.00 0.00 3.85
3414 4996 4.658063 TGACCACGAAACCAAATTATCCT 58.342 39.130 0.00 0.00 0.00 3.24
3562 5144 3.429272 CCCTTAACGTACCGAACTATGCA 60.429 47.826 0.00 0.00 0.00 3.96
3729 5311 0.752054 AAGGTCACCGGTGTTAACGA 59.248 50.000 32.74 11.09 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.574458 TCGATAAAGAGAAGTGTAGATCAAAAG 57.426 33.333 0.00 0.00 0.00 2.27
50 51 0.110056 GTGCACCAGAACAGCAATCG 60.110 55.000 5.22 0.00 40.35 3.34
77 78 1.178534 TTGTTGTGCTAAGGCCCAGC 61.179 55.000 18.03 18.03 39.56 4.85
90 91 3.869065 TGGAGAGTCGAAAAGTTGTTGT 58.131 40.909 0.00 0.00 0.00 3.32
95 96 2.103263 AGCACTGGAGAGTCGAAAAGTT 59.897 45.455 0.00 0.00 0.00 2.66
101 102 0.328592 AGGTAGCACTGGAGAGTCGA 59.671 55.000 0.00 0.00 0.00 4.20
155 156 3.740764 GCAGAATGTTTGGGCAGTTTGAA 60.741 43.478 0.00 0.00 39.31 2.69
157 158 2.137523 GCAGAATGTTTGGGCAGTTTG 58.862 47.619 0.00 0.00 39.31 2.93
162 163 2.274645 CGGGCAGAATGTTTGGGCA 61.275 57.895 0.00 0.00 39.31 5.36
163 164 2.573340 CGGGCAGAATGTTTGGGC 59.427 61.111 0.00 0.00 39.31 5.36
164 165 3.005540 GCCGGGCAGAATGTTTGGG 62.006 63.158 15.62 0.00 39.31 4.12
165 166 0.679640 TAGCCGGGCAGAATGTTTGG 60.680 55.000 23.09 0.00 39.31 3.28
166 167 1.066002 CATAGCCGGGCAGAATGTTTG 59.934 52.381 23.09 0.67 39.31 2.93
167 168 1.392589 CATAGCCGGGCAGAATGTTT 58.607 50.000 23.09 0.00 39.31 2.83
168 169 0.466189 CCATAGCCGGGCAGAATGTT 60.466 55.000 23.09 0.13 39.31 2.71
169 170 1.149174 CCATAGCCGGGCAGAATGT 59.851 57.895 23.09 0.97 39.31 2.71
170 171 1.149174 ACCATAGCCGGGCAGAATG 59.851 57.895 23.09 19.55 40.87 2.67
171 172 1.149174 CACCATAGCCGGGCAGAAT 59.851 57.895 23.09 8.75 0.00 2.40
184 185 0.107017 CATCGCCCTTCCTTCACCAT 60.107 55.000 0.00 0.00 0.00 3.55
205 206 1.079197 AGCCGAATGTGCATCGTCA 60.079 52.632 7.37 0.00 38.60 4.35
214 215 0.458543 CACTGTAGCGAGCCGAATGT 60.459 55.000 0.00 0.00 0.00 2.71
216 217 1.519455 GCACTGTAGCGAGCCGAAT 60.519 57.895 0.00 0.00 0.00 3.34
274 275 9.377312 GCAAAGGCACAGGAAATAATAATAAAA 57.623 29.630 0.00 0.00 40.72 1.52
290 291 1.543802 CGGAATAAAGGCAAAGGCACA 59.456 47.619 0.00 0.00 43.71 4.57
389 390 5.560724 AGAATTTGGACTCGAAGAAATGGA 58.439 37.500 0.00 0.00 34.09 3.41
464 468 0.907704 TACAGTTCATCCACCCGGCT 60.908 55.000 0.00 0.00 0.00 5.52
485 500 0.541863 AGTCATTTAGGAGGGCGTGG 59.458 55.000 0.00 0.00 0.00 4.94
493 509 3.255642 GGCAAGCAACAAGTCATTTAGGA 59.744 43.478 0.00 0.00 0.00 2.94
511 527 0.887247 CGATGGTTCATGGTTGGCAA 59.113 50.000 0.00 0.00 0.00 4.52
601 617 4.809426 AGCGGTCTTCTAATTAATCCAACG 59.191 41.667 0.00 0.00 0.00 4.10
626 642 0.733729 AAGACGCGGTGAGCTAGTAG 59.266 55.000 12.47 0.00 45.59 2.57
627 643 0.450583 CAAGACGCGGTGAGCTAGTA 59.549 55.000 12.47 0.00 45.59 1.82
628 644 1.213013 CAAGACGCGGTGAGCTAGT 59.787 57.895 12.47 0.00 45.59 2.57
658 674 2.917227 GGGGCAGTTGGGTGTTGG 60.917 66.667 0.00 0.00 0.00 3.77
678 694 5.721480 TGTCTCCTCTCCTGATTGACAATAA 59.279 40.000 0.00 0.00 31.30 1.40
701 717 3.635433 CATTCAATGCCGGCTTCTG 57.365 52.632 29.70 20.90 0.00 3.02
873 910 2.205152 AGACACGGGTAGTTGGCGT 61.205 57.895 0.00 0.00 0.00 5.68
894 931 1.134401 TGGGCGAGATGGAAGAACATC 60.134 52.381 0.00 0.00 45.91 3.06
898 935 1.559219 TCATTGGGCGAGATGGAAGAA 59.441 47.619 0.00 0.00 0.00 2.52
899 936 1.203237 TCATTGGGCGAGATGGAAGA 58.797 50.000 0.00 0.00 0.00 2.87
900 937 2.267174 ATCATTGGGCGAGATGGAAG 57.733 50.000 0.00 0.00 0.00 3.46
911 948 4.580167 CCACCGGCATTATATATCATTGGG 59.420 45.833 0.00 0.00 0.00 4.12
916 953 3.841255 TGACCCACCGGCATTATATATCA 59.159 43.478 0.00 0.00 0.00 2.15
925 962 1.077501 CTCAATGACCCACCGGCAT 60.078 57.895 0.00 0.00 0.00 4.40
929 966 0.541392 TGATCCTCAATGACCCACCG 59.459 55.000 0.00 0.00 0.00 4.94
936 973 4.880120 GCTCTGAAACATGATCCTCAATGA 59.120 41.667 0.00 0.00 0.00 2.57
937 974 4.638865 TGCTCTGAAACATGATCCTCAATG 59.361 41.667 0.00 0.00 0.00 2.82
938 975 4.639310 GTGCTCTGAAACATGATCCTCAAT 59.361 41.667 0.00 0.00 0.00 2.57
939 976 4.005650 GTGCTCTGAAACATGATCCTCAA 58.994 43.478 0.00 0.00 0.00 3.02
940 977 3.262660 AGTGCTCTGAAACATGATCCTCA 59.737 43.478 0.00 0.00 0.00 3.86
941 978 3.622163 CAGTGCTCTGAAACATGATCCTC 59.378 47.826 10.27 0.00 43.76 3.71
942 979 3.607741 CAGTGCTCTGAAACATGATCCT 58.392 45.455 10.27 0.00 43.76 3.24
943 980 2.097142 GCAGTGCTCTGAAACATGATCC 59.903 50.000 19.61 0.00 43.76 3.36
944 981 2.745821 TGCAGTGCTCTGAAACATGATC 59.254 45.455 19.61 0.00 43.76 2.92
945 982 2.747989 CTGCAGTGCTCTGAAACATGAT 59.252 45.455 19.61 0.00 43.76 2.45
946 983 2.148768 CTGCAGTGCTCTGAAACATGA 58.851 47.619 19.61 0.00 43.76 3.07
947 984 1.878088 ACTGCAGTGCTCTGAAACATG 59.122 47.619 20.97 0.00 43.76 3.21
948 985 1.878088 CACTGCAGTGCTCTGAAACAT 59.122 47.619 32.39 0.00 43.76 2.71
949 986 1.302366 CACTGCAGTGCTCTGAAACA 58.698 50.000 32.39 7.12 43.76 2.83
961 998 0.659427 CAACCACACTGACACTGCAG 59.341 55.000 13.48 13.48 41.63 4.41
962 999 0.035534 ACAACCACACTGACACTGCA 60.036 50.000 0.00 0.00 0.00 4.41
963 1000 0.378257 CACAACCACACTGACACTGC 59.622 55.000 0.00 0.00 0.00 4.40
964 1001 1.016627 CCACAACCACACTGACACTG 58.983 55.000 0.00 0.00 0.00 3.66
965 1002 0.107214 CCCACAACCACACTGACACT 60.107 55.000 0.00 0.00 0.00 3.55
966 1003 1.724582 GCCCACAACCACACTGACAC 61.725 60.000 0.00 0.00 0.00 3.67
967 1004 1.453015 GCCCACAACCACACTGACA 60.453 57.895 0.00 0.00 0.00 3.58
968 1005 1.447317 CTGCCCACAACCACACTGAC 61.447 60.000 0.00 0.00 0.00 3.51
969 1006 1.152984 CTGCCCACAACCACACTGA 60.153 57.895 0.00 0.00 0.00 3.41
978 1015 1.601759 GCTTCAGAGCTGCCCACAA 60.602 57.895 0.00 0.00 45.65 3.33
979 1016 2.033141 GCTTCAGAGCTGCCCACA 59.967 61.111 0.00 0.00 45.65 4.17
985 1025 7.952880 TGGTAACTCATTTTGCTTCAGAGCTG 61.953 42.308 0.00 0.00 43.76 4.24
986 1026 5.978457 TGGTAACTCATTTTGCTTCAGAGCT 60.978 40.000 0.00 0.00 43.76 4.09
987 1027 4.216257 TGGTAACTCATTTTGCTTCAGAGC 59.784 41.667 0.00 0.00 43.70 4.09
998 1038 5.703130 GTCTTCTTCAGCTGGTAACTCATTT 59.297 40.000 15.13 0.00 37.61 2.32
999 1039 5.241662 GTCTTCTTCAGCTGGTAACTCATT 58.758 41.667 15.13 0.00 37.61 2.57
1006 1046 1.544691 GGTCGTCTTCTTCAGCTGGTA 59.455 52.381 15.13 1.26 0.00 3.25
1092 1132 4.464947 TCAGACAGAGAGAAGACTTGTCA 58.535 43.478 14.24 0.00 0.00 3.58
1093 1133 5.446143 TTCAGACAGAGAGAAGACTTGTC 57.554 43.478 4.18 4.18 0.00 3.18
1096 1136 5.779771 AGGAATTCAGACAGAGAGAAGACTT 59.220 40.000 7.93 0.00 0.00 3.01
1097 1137 5.332743 AGGAATTCAGACAGAGAGAAGACT 58.667 41.667 7.93 0.00 0.00 3.24
1098 1138 5.659440 AGGAATTCAGACAGAGAGAAGAC 57.341 43.478 7.93 0.00 0.00 3.01
1108 1148 2.290514 CCAGCAGGAAGGAATTCAGACA 60.291 50.000 7.93 0.00 36.89 3.41
1142 1182 0.098025 AACGGAAACACAACACGCAG 59.902 50.000 0.00 0.00 0.00 5.18
1146 1186 4.281525 ACATACAACGGAAACACAACAC 57.718 40.909 0.00 0.00 0.00 3.32
1150 1190 4.331992 TCGAAAACATACAACGGAAACACA 59.668 37.500 0.00 0.00 0.00 3.72
1163 1210 7.222031 CGACTTACAGATTGGATCGAAAACATA 59.778 37.037 0.00 0.00 0.00 2.29
1164 1211 6.036083 CGACTTACAGATTGGATCGAAAACAT 59.964 38.462 0.00 0.00 0.00 2.71
1172 1219 2.541762 GCTGCGACTTACAGATTGGATC 59.458 50.000 0.00 0.00 37.32 3.36
1182 1229 1.069227 CCCACAAAAGCTGCGACTTAC 60.069 52.381 0.00 0.00 0.00 2.34
1187 1234 2.192861 CCACCCACAAAAGCTGCGA 61.193 57.895 0.00 0.00 0.00 5.10
1202 1318 4.065088 TGAGAATTGTACTGCAGTTCCAC 58.935 43.478 27.06 17.82 42.58 4.02
1275 1405 5.425630 TCACTTGAAGATCAGATCCACATG 58.574 41.667 6.80 11.30 0.00 3.21
1276 1406 5.672503 CTCACTTGAAGATCAGATCCACAT 58.327 41.667 6.80 0.00 0.00 3.21
1277 1407 4.622457 GCTCACTTGAAGATCAGATCCACA 60.622 45.833 6.80 5.06 0.00 4.17
1278 1408 3.870419 GCTCACTTGAAGATCAGATCCAC 59.130 47.826 6.80 2.50 0.00 4.02
1279 1409 3.773667 AGCTCACTTGAAGATCAGATCCA 59.226 43.478 6.80 0.00 0.00 3.41
1280 1410 4.370917 GAGCTCACTTGAAGATCAGATCC 58.629 47.826 9.40 0.00 0.00 3.36
1281 1411 4.043750 CGAGCTCACTTGAAGATCAGATC 58.956 47.826 15.40 1.64 0.00 2.75
1282 1412 3.698539 TCGAGCTCACTTGAAGATCAGAT 59.301 43.478 15.40 0.00 33.09 2.90
1283 1413 3.084786 TCGAGCTCACTTGAAGATCAGA 58.915 45.455 15.40 0.00 33.09 3.27
1284 1414 3.500558 TCGAGCTCACTTGAAGATCAG 57.499 47.619 15.40 0.00 33.09 2.90
1293 1423 3.251571 GGTAACGAATTCGAGCTCACTT 58.748 45.455 33.05 17.20 43.02 3.16
1308 1438 5.179368 AGTGATTGAACATGTTCTGGTAACG 59.821 40.000 32.57 0.00 40.14 3.18
1311 1441 6.427853 CAGAAGTGATTGAACATGTTCTGGTA 59.572 38.462 32.57 18.69 38.53 3.25
1314 1444 6.549912 TCAGAAGTGATTGAACATGTTCTG 57.450 37.500 32.57 21.49 40.72 3.02
1316 1446 9.897744 TTTATTCAGAAGTGATTGAACATGTTC 57.102 29.630 28.10 28.10 36.26 3.18
1357 1625 7.671495 ATTACTTTCAAAAATCAATGGGTGC 57.329 32.000 0.00 0.00 0.00 5.01
1381 1649 9.643693 CTTCCCGTGAAAAGTTACTATAGTTAA 57.356 33.333 11.40 1.02 0.00 2.01
1382 1650 9.023962 TCTTCCCGTGAAAAGTTACTATAGTTA 57.976 33.333 11.40 0.00 0.00 2.24
1384 1652 7.395489 TCTCTTCCCGTGAAAAGTTACTATAGT 59.605 37.037 10.87 10.87 0.00 2.12
1385 1653 7.769220 TCTCTTCCCGTGAAAAGTTACTATAG 58.231 38.462 0.00 0.00 0.00 1.31
1387 1655 6.600882 TCTCTTCCCGTGAAAAGTTACTAT 57.399 37.500 0.00 0.00 0.00 2.12
1389 1657 4.950205 TCTCTTCCCGTGAAAAGTTACT 57.050 40.909 0.00 0.00 0.00 2.24
1390 1658 7.387122 AGTTAATCTCTTCCCGTGAAAAGTTAC 59.613 37.037 0.00 0.00 0.00 2.50
1401 2061 9.206870 CTAGTAGTAGTAGTTAATCTCTTCCCG 57.793 40.741 4.10 0.00 0.00 5.14
1435 2188 4.034048 GGACGTTCGTGCAAATCAAGATAT 59.966 41.667 11.54 0.00 33.34 1.63
1437 2190 2.159627 GGACGTTCGTGCAAATCAAGAT 59.840 45.455 11.54 0.00 33.34 2.40
1438 2191 1.529438 GGACGTTCGTGCAAATCAAGA 59.471 47.619 11.54 0.00 0.00 3.02
1439 2192 1.262950 TGGACGTTCGTGCAAATCAAG 59.737 47.619 16.14 0.00 33.71 3.02
1440 2193 1.300481 TGGACGTTCGTGCAAATCAA 58.700 45.000 16.14 0.00 33.71 2.57
1488 2353 1.144936 CTCCTCCGTCAGATTGCCC 59.855 63.158 0.00 0.00 0.00 5.36
1493 2358 1.459455 CGCCATCTCCTCCGTCAGAT 61.459 60.000 0.00 0.00 0.00 2.90
1510 2375 1.773496 CGTCCGACAGAAAACTCGC 59.227 57.895 0.00 0.00 0.00 5.03
1567 2432 2.633509 CCTTGGTGGCTTGCTCTGC 61.634 63.158 0.00 0.00 0.00 4.26
1569 2434 2.417558 GACCCTTGGTGGCTTGCTCT 62.418 60.000 0.00 0.00 35.25 4.09
1578 2443 1.352083 TCTCCTTGAGACCCTTGGTG 58.648 55.000 0.00 0.00 35.25 4.17
1627 2492 2.827921 GACTGACCCAGGAAATTGCATT 59.172 45.455 0.00 0.00 35.51 3.56
1652 2517 8.974292 AAGAGGGGCTTATATACTATGAGAAA 57.026 34.615 0.00 0.00 34.31 2.52
1666 2531 7.237055 GGGAGTAGAATTTATAAGAGGGGCTTA 59.763 40.741 0.00 0.00 42.92 3.09
1668 2533 5.548446 GGGAGTAGAATTTATAAGAGGGGCT 59.452 44.000 0.00 0.00 0.00 5.19
1670 2535 6.213802 GGAGGGAGTAGAATTTATAAGAGGGG 59.786 46.154 0.00 0.00 0.00 4.79
1671 2536 6.071278 CGGAGGGAGTAGAATTTATAAGAGGG 60.071 46.154 0.00 0.00 0.00 4.30
1673 2538 7.527568 ACGGAGGGAGTAGAATTTATAAGAG 57.472 40.000 0.00 0.00 0.00 2.85
1674 2539 7.015001 GGAACGGAGGGAGTAGAATTTATAAGA 59.985 40.741 0.00 0.00 0.00 2.10
1678 2543 5.217400 AGGAACGGAGGGAGTAGAATTTAT 58.783 41.667 0.00 0.00 0.00 1.40
1679 2544 4.617593 AGGAACGGAGGGAGTAGAATTTA 58.382 43.478 0.00 0.00 0.00 1.40
1680 2545 3.451890 AGGAACGGAGGGAGTAGAATTT 58.548 45.455 0.00 0.00 0.00 1.82
1681 2546 3.117552 AGGAACGGAGGGAGTAGAATT 57.882 47.619 0.00 0.00 0.00 2.17
1682 2547 2.850695 AGGAACGGAGGGAGTAGAAT 57.149 50.000 0.00 0.00 0.00 2.40
1683 2548 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
1684 2549 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
1685 2550 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
1686 2551 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1687 2552 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1688 2553 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1689 2554 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1690 2555 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1691 2556 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1692 2557 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1693 2558 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1694 2559 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
1695 2560 9.635520 TTCTAGAAAGACAAGTATTTAGGAACG 57.364 33.333 1.68 0.00 0.00 3.95
1718 2583 8.504005 CCGTATGTAGTCACTTTTGAAATTTCT 58.496 33.333 18.64 0.00 31.90 2.52
1719 2584 8.287503 ACCGTATGTAGTCACTTTTGAAATTTC 58.712 33.333 11.41 11.41 31.90 2.17
1720 2585 8.073768 CACCGTATGTAGTCACTTTTGAAATTT 58.926 33.333 0.00 0.00 31.90 1.82
1721 2586 7.581476 CACCGTATGTAGTCACTTTTGAAATT 58.419 34.615 0.00 0.00 31.90 1.82
1722 2587 6.348213 GCACCGTATGTAGTCACTTTTGAAAT 60.348 38.462 0.00 0.00 31.90 2.17
1723 2588 5.049954 GCACCGTATGTAGTCACTTTTGAAA 60.050 40.000 0.00 0.00 31.90 2.69
1724 2589 4.449743 GCACCGTATGTAGTCACTTTTGAA 59.550 41.667 0.00 0.00 31.90 2.69
1725 2590 3.991773 GCACCGTATGTAGTCACTTTTGA 59.008 43.478 0.00 0.00 0.00 2.69
1726 2591 3.743911 TGCACCGTATGTAGTCACTTTTG 59.256 43.478 0.00 0.00 0.00 2.44
1727 2592 3.997762 TGCACCGTATGTAGTCACTTTT 58.002 40.909 0.00 0.00 0.00 2.27
1728 2593 3.671008 TGCACCGTATGTAGTCACTTT 57.329 42.857 0.00 0.00 0.00 2.66
1729 2594 3.671008 TTGCACCGTATGTAGTCACTT 57.329 42.857 0.00 0.00 0.00 3.16
1730 2595 3.671008 TTTGCACCGTATGTAGTCACT 57.329 42.857 0.00 0.00 0.00 3.41
1731 2596 4.390603 TCATTTTGCACCGTATGTAGTCAC 59.609 41.667 0.00 0.00 0.00 3.67
1732 2597 4.570930 TCATTTTGCACCGTATGTAGTCA 58.429 39.130 0.00 0.00 0.00 3.41
1733 2598 4.630069 ACTCATTTTGCACCGTATGTAGTC 59.370 41.667 0.00 0.00 0.00 2.59
1734 2599 4.391830 CACTCATTTTGCACCGTATGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
1735 2600 4.629634 TCACTCATTTTGCACCGTATGTAG 59.370 41.667 0.00 0.00 0.00 2.74
1736 2601 4.570930 TCACTCATTTTGCACCGTATGTA 58.429 39.130 0.00 0.00 0.00 2.29
1737 2602 3.407698 TCACTCATTTTGCACCGTATGT 58.592 40.909 0.00 0.00 0.00 2.29
1738 2603 4.418013 TTCACTCATTTTGCACCGTATG 57.582 40.909 0.00 0.00 0.00 2.39
1739 2604 4.943705 AGATTCACTCATTTTGCACCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
1740 2605 4.323417 AGATTCACTCATTTTGCACCGTA 58.677 39.130 0.00 0.00 0.00 4.02
1741 2606 3.149196 AGATTCACTCATTTTGCACCGT 58.851 40.909 0.00 0.00 0.00 4.83
1742 2607 3.837213 AGATTCACTCATTTTGCACCG 57.163 42.857 0.00 0.00 0.00 4.94
1743 2608 5.182001 AGTGTAGATTCACTCATTTTGCACC 59.818 40.000 0.00 0.00 44.07 5.01
1744 2609 6.246420 AGTGTAGATTCACTCATTTTGCAC 57.754 37.500 0.00 0.00 44.07 4.57
1745 2610 6.882610 AAGTGTAGATTCACTCATTTTGCA 57.117 33.333 0.00 0.00 46.25 4.08
1746 2611 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
1775 2640 9.244292 ACTCAATATACGGATGTATGTAGACAT 57.756 33.333 0.08 0.08 41.37 3.06
1776 2641 8.631480 ACTCAATATACGGATGTATGTAGACA 57.369 34.615 0.00 0.00 41.37 3.41
1777 2642 8.182881 GGACTCAATATACGGATGTATGTAGAC 58.817 40.741 0.00 0.00 41.37 2.59
1778 2643 7.886446 TGGACTCAATATACGGATGTATGTAGA 59.114 37.037 0.00 0.00 41.37 2.59
1779 2644 8.051901 TGGACTCAATATACGGATGTATGTAG 57.948 38.462 0.00 0.00 41.37 2.74
1780 2645 8.589701 ATGGACTCAATATACGGATGTATGTA 57.410 34.615 0.00 0.00 41.37 2.29
1781 2646 6.911250 TGGACTCAATATACGGATGTATGT 57.089 37.500 0.00 0.00 41.37 2.29
1782 2647 8.659491 CAAATGGACTCAATATACGGATGTATG 58.341 37.037 0.00 0.00 41.37 2.39
1783 2648 8.593679 TCAAATGGACTCAATATACGGATGTAT 58.406 33.333 0.00 0.00 43.62 2.29
1784 2649 7.958088 TCAAATGGACTCAATATACGGATGTA 58.042 34.615 0.00 0.00 34.45 2.29
1785 2650 6.826668 TCAAATGGACTCAATATACGGATGT 58.173 36.000 0.00 0.00 0.00 3.06
1786 2651 7.728847 TTCAAATGGACTCAATATACGGATG 57.271 36.000 0.00 0.00 0.00 3.51
1787 2652 8.786898 CATTTCAAATGGACTCAATATACGGAT 58.213 33.333 1.73 0.00 0.00 4.18
1788 2653 7.255104 GCATTTCAAATGGACTCAATATACGGA 60.255 37.037 12.14 0.00 0.00 4.69
1789 2654 6.857964 GCATTTCAAATGGACTCAATATACGG 59.142 38.462 12.14 0.00 0.00 4.02
1790 2655 6.857964 GGCATTTCAAATGGACTCAATATACG 59.142 38.462 12.14 0.00 0.00 3.06
1791 2656 7.945134 AGGCATTTCAAATGGACTCAATATAC 58.055 34.615 12.14 0.00 0.00 1.47
1792 2657 9.288576 CTAGGCATTTCAAATGGACTCAATATA 57.711 33.333 12.14 0.00 0.00 0.86
1793 2658 8.000709 TCTAGGCATTTCAAATGGACTCAATAT 58.999 33.333 12.14 0.00 0.00 1.28
1794 2659 7.345691 TCTAGGCATTTCAAATGGACTCAATA 58.654 34.615 12.14 0.00 0.00 1.90
1795 2660 6.189859 TCTAGGCATTTCAAATGGACTCAAT 58.810 36.000 12.14 0.00 0.00 2.57
1796 2661 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
1797 2662 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
1798 2663 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
1799 2664 6.248433 TCTTTCTAGGCATTTCAAATGGACT 58.752 36.000 12.14 3.08 0.00 3.85
1800 2665 6.515272 TCTTTCTAGGCATTTCAAATGGAC 57.485 37.500 12.14 0.00 0.00 4.02
1801 2666 8.821686 TTATCTTTCTAGGCATTTCAAATGGA 57.178 30.769 12.14 0.00 0.00 3.41
1802 2667 8.689972 ACTTATCTTTCTAGGCATTTCAAATGG 58.310 33.333 12.14 0.00 0.00 3.16
1809 2674 9.920946 TCCAAATACTTATCTTTCTAGGCATTT 57.079 29.630 0.00 0.00 0.00 2.32
1810 2675 9.920946 TTCCAAATACTTATCTTTCTAGGCATT 57.079 29.630 0.00 0.00 0.00 3.56
1811 2676 9.920946 TTTCCAAATACTTATCTTTCTAGGCAT 57.079 29.630 0.00 0.00 0.00 4.40
1812 2677 9.174166 GTTTCCAAATACTTATCTTTCTAGGCA 57.826 33.333 0.00 0.00 0.00 4.75
1813 2678 8.336080 CGTTTCCAAATACTTATCTTTCTAGGC 58.664 37.037 0.00 0.00 0.00 3.93
1814 2679 8.827677 CCGTTTCCAAATACTTATCTTTCTAGG 58.172 37.037 0.00 0.00 0.00 3.02
1815 2680 9.595823 TCCGTTTCCAAATACTTATCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
1816 2681 9.595823 CTCCGTTTCCAAATACTTATCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
1817 2682 7.553044 CCTCCGTTTCCAAATACTTATCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
1818 2683 7.201705 CCCTCCGTTTCCAAATACTTATCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
1819 2684 6.602009 CCCTCCGTTTCCAAATACTTATCTTT 59.398 38.462 0.00 0.00 0.00 2.52
1820 2685 6.069847 TCCCTCCGTTTCCAAATACTTATCTT 60.070 38.462 0.00 0.00 0.00 2.40
1821 2686 5.427481 TCCCTCCGTTTCCAAATACTTATCT 59.573 40.000 0.00 0.00 0.00 1.98
1822 2687 5.677567 TCCCTCCGTTTCCAAATACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
1823 2688 5.191124 ACTCCCTCCGTTTCCAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
1824 2689 4.533311 ACTCCCTCCGTTTCCAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
1825 2690 3.329814 ACTCCCTCCGTTTCCAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
1826 2691 2.910977 ACTCCCTCCGTTTCCAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
1827 2692 3.345508 ACTCCCTCCGTTTCCAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
1828 2693 3.198417 GGTACTCCCTCCGTTTCCAAATA 59.802 47.826 0.00 0.00 0.00 1.40
1829 2694 2.026542 GGTACTCCCTCCGTTTCCAAAT 60.027 50.000 0.00 0.00 0.00 2.32
1830 2695 1.348696 GGTACTCCCTCCGTTTCCAAA 59.651 52.381 0.00 0.00 0.00 3.28
1831 2696 0.978907 GGTACTCCCTCCGTTTCCAA 59.021 55.000 0.00 0.00 0.00 3.53
1832 2697 0.115745 AGGTACTCCCTCCGTTTCCA 59.884 55.000 0.00 0.00 40.71 3.53
1833 2698 2.987985 AGGTACTCCCTCCGTTTCC 58.012 57.895 0.00 0.00 40.71 3.13
1846 2711 4.946478 ATGAGCAGATACTTGGAGGTAC 57.054 45.455 0.00 0.00 0.00 3.34
1848 2713 7.069331 GCTATATATGAGCAGATACTTGGAGGT 59.931 40.741 6.58 0.00 39.84 3.85
1853 2718 6.417339 CGCAGCTATATATGAGCAGATACTTG 59.583 42.308 12.46 3.41 42.69 3.16
1856 2721 5.685068 CACGCAGCTATATATGAGCAGATAC 59.315 44.000 12.46 0.00 42.69 2.24
1870 2735 2.160219 CACAACACAATCACGCAGCTAT 59.840 45.455 0.00 0.00 0.00 2.97
1878 2743 3.247648 AGTCGCTTACACAACACAATCAC 59.752 43.478 0.00 0.00 0.00 3.06
1882 2748 3.173668 AGAGTCGCTTACACAACACAA 57.826 42.857 0.00 0.00 0.00 3.33
1885 2751 3.318275 AGAGAAGAGTCGCTTACACAACA 59.682 43.478 0.00 0.00 36.83 3.33
1886 2752 3.670991 CAGAGAAGAGTCGCTTACACAAC 59.329 47.826 0.00 0.00 36.83 3.32
1897 2763 7.291567 CCATTTTTACGAAACAGAGAAGAGTC 58.708 38.462 0.00 0.00 0.00 3.36
1909 2777 3.058777 GTCGTCCTGCCATTTTTACGAAA 60.059 43.478 0.00 0.00 40.56 3.46
1911 2779 2.070783 GTCGTCCTGCCATTTTTACGA 58.929 47.619 0.00 0.00 37.05 3.43
1915 2783 2.231235 GGAATGTCGTCCTGCCATTTTT 59.769 45.455 0.00 0.00 34.56 1.94
1916 2784 1.818674 GGAATGTCGTCCTGCCATTTT 59.181 47.619 0.00 0.00 34.56 1.82
1941 2819 4.452733 CCGGGCCTCGTTCTCCAC 62.453 72.222 0.84 0.00 37.11 4.02
2058 2939 7.774625 TGTCTGCTAATGGATTGATCATTGTAA 59.225 33.333 0.00 0.00 36.40 2.41
2099 3096 5.365619 AGTTAGTGTTGGTGTTCCTGTAAG 58.634 41.667 0.00 0.00 34.23 2.34
2101 3098 5.120399 CAAGTTAGTGTTGGTGTTCCTGTA 58.880 41.667 0.00 0.00 34.23 2.74
2102 3099 3.926058 AGTTAGTGTTGGTGTTCCTGT 57.074 42.857 0.00 0.00 34.23 4.00
2103 3100 3.945285 ACAAGTTAGTGTTGGTGTTCCTG 59.055 43.478 0.00 0.00 34.23 3.86
2104 3101 4.230745 ACAAGTTAGTGTTGGTGTTCCT 57.769 40.909 0.00 0.00 34.23 3.36
2105 3102 4.877251 TGTACAAGTTAGTGTTGGTGTTCC 59.123 41.667 0.00 0.00 32.75 3.62
2129 3172 6.071616 TGGCTGAAACTTTAGACTGTTTTTGT 60.072 34.615 0.00 0.00 36.64 2.83
2131 3174 6.524101 TGGCTGAAACTTTAGACTGTTTTT 57.476 33.333 0.00 0.00 36.64 1.94
2132 3175 6.405842 CCTTGGCTGAAACTTTAGACTGTTTT 60.406 38.462 0.00 0.00 36.64 2.43
2162 3205 4.475016 AGGAGATACACCAGGTGCTTTATT 59.525 41.667 20.48 1.06 36.98 1.40
2190 3233 1.501741 CCGAGTTGGTGGCGAAATG 59.498 57.895 0.00 0.00 0.00 2.32
2207 3250 0.389948 AGTCGTCTTGTTCATCCGCC 60.390 55.000 0.00 0.00 0.00 6.13
2271 3314 2.103538 GGTTATCGACAGCGGCGA 59.896 61.111 12.98 8.84 42.48 5.54
2345 3388 1.198759 TCCTTGGAGGGTCGAAAGGG 61.199 60.000 10.62 0.00 39.76 3.95
2360 3403 6.266330 CCTTCCAGAAAGACTCAAAAATCCTT 59.734 38.462 0.00 0.00 37.12 3.36
2372 3415 5.003804 TCTTTGCATACCTTCCAGAAAGAC 58.996 41.667 0.00 0.00 37.12 3.01
2378 3421 7.040823 GGATTAGAATCTTTGCATACCTTCCAG 60.041 40.741 2.44 0.00 35.73 3.86
2389 3439 7.965107 CACTACAGTTTGGATTAGAATCTTTGC 59.035 37.037 2.44 0.00 35.73 3.68
2404 3456 6.738114 ACATTGGATGAAACACTACAGTTTG 58.262 36.000 0.00 0.00 41.48 2.93
2408 3460 5.630680 GCAAACATTGGATGAAACACTACAG 59.369 40.000 0.00 0.00 0.00 2.74
2412 3464 3.552684 CGGCAAACATTGGATGAAACACT 60.553 43.478 0.00 0.00 0.00 3.55
2450 4008 8.786898 TGAGATTTTCACTGATAAAACAGGAAG 58.213 33.333 0.00 0.00 41.59 3.46
2478 4038 4.349342 AGGGCAGAGTAGATAAAATCAGGG 59.651 45.833 0.00 0.00 0.00 4.45
2589 4153 7.013083 GTCAAAGATGTCAGCCATTATCTTGAT 59.987 37.037 0.00 0.00 39.20 2.57
2630 4194 4.704057 GTGCTTCTTCCTCCAAATGAAGAT 59.296 41.667 0.00 0.00 44.60 2.40
2738 4302 5.163405 GCCTATCTTCTATCAGTGGTTGTGA 60.163 44.000 0.00 0.00 0.00 3.58
2786 4351 0.036164 CCCCACTGTGGATGAACGAA 59.964 55.000 27.94 0.00 40.96 3.85
2948 4520 0.392060 TAGTCCGAGCTAGTCGCACA 60.392 55.000 10.15 0.00 42.27 4.57
3414 4996 5.333492 CGTCTGGTTACTGCGTTTATTTTGA 60.333 40.000 0.00 0.00 0.00 2.69
3562 5144 2.378547 TCCCACCTTAGCCTTGTCAAAT 59.621 45.455 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.