Multiple sequence alignment - TraesCS4A01G394900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G394900 chr4A 100.000 3251 0 0 1 3251 669896779 669900029 0.000000e+00 6004.0
1 TraesCS4A01G394900 chr4A 98.949 761 8 0 1 761 669879135 669879895 0.000000e+00 1362.0
2 TraesCS4A01G394900 chr4A 86.765 68 9 0 1338 1405 548645966 548645899 3.480000e-10 76.8
3 TraesCS4A01G394900 chr7D 87.050 1444 135 15 1337 2767 54353638 54355042 0.000000e+00 1583.0
4 TraesCS4A01G394900 chr7D 92.100 924 64 2 1339 2261 54319549 54320464 0.000000e+00 1293.0
5 TraesCS4A01G394900 chr7D 91.561 865 69 4 1399 2261 54310812 54311674 0.000000e+00 1190.0
6 TraesCS4A01G394900 chr7D 89.201 926 88 2 1333 2258 54336458 54337371 0.000000e+00 1146.0
7 TraesCS4A01G394900 chr7D 89.624 665 43 10 646 1287 54352886 54353547 0.000000e+00 822.0
8 TraesCS4A01G394900 chr7D 84.241 514 48 11 2270 2781 54320503 54320985 1.370000e-128 470.0
9 TraesCS4A01G394900 chr7D 88.740 373 42 0 1 373 139748809 139748437 1.060000e-124 457.0
10 TraesCS4A01G394900 chr7D 85.561 374 41 10 863 1226 54310442 54310812 2.370000e-101 379.0
11 TraesCS4A01G394900 chr7D 83.846 390 45 13 863 1247 54335962 54336338 3.990000e-94 355.0
12 TraesCS4A01G394900 chr7D 85.373 335 39 8 918 1247 54319098 54319427 4.020000e-89 339.0
13 TraesCS4A01G394900 chr7D 88.800 250 21 3 376 618 54352641 54352890 1.900000e-77 300.0
14 TraesCS4A01G394900 chrUn 98.817 761 6 1 1 761 49126750 49127507 0.000000e+00 1352.0
15 TraesCS4A01G394900 chrUn 91.432 852 72 1 1406 2256 49139889 49140740 0.000000e+00 1168.0
16 TraesCS4A01G394900 chrUn 91.197 852 74 1 1406 2256 49113050 49113901 0.000000e+00 1157.0
17 TraesCS4A01G394900 chrUn 91.197 852 74 1 1406 2256 384624772 384623921 0.000000e+00 1157.0
18 TraesCS4A01G394900 chrUn 99.034 207 2 0 555 761 261594912 261595118 3.960000e-99 372.0
19 TraesCS4A01G394900 chrUn 86.786 280 27 5 986 1258 49112787 49113063 1.470000e-78 303.0
20 TraesCS4A01G394900 chrUn 86.786 280 27 5 986 1258 49139626 49139902 1.470000e-78 303.0
21 TraesCS4A01G394900 chrUn 86.786 280 27 5 986 1258 384625035 384624759 1.470000e-78 303.0
22 TraesCS4A01G394900 chr7A 92.281 868 62 2 1397 2261 57864299 57865164 0.000000e+00 1227.0
23 TraesCS4A01G394900 chr7A 92.164 855 64 1 1410 2261 57802903 57803757 0.000000e+00 1205.0
24 TraesCS4A01G394900 chr7A 85.399 589 70 7 2303 2879 57803820 57804404 6.000000e-167 597.0
25 TraesCS4A01G394900 chr7A 82.960 446 52 15 863 1297 57863756 57864188 6.580000e-102 381.0
26 TraesCS4A01G394900 chr7A 86.755 302 25 5 986 1284 57802461 57802750 4.050000e-84 322.0
27 TraesCS4A01G394900 chr7A 100.000 30 0 0 1259 1288 693997022 693996993 4.530000e-04 56.5
28 TraesCS4A01G394900 chr3D 87.958 382 46 0 1 382 378776631 378776250 4.950000e-123 451.0
29 TraesCS4A01G394900 chr6B 88.095 378 43 2 1 377 23233172 23232796 6.400000e-122 448.0
30 TraesCS4A01G394900 chr2A 87.798 377 45 1 1 377 729228111 729228486 1.070000e-119 440.0
31 TraesCS4A01G394900 chr4D 87.701 374 44 2 1 373 482769153 482769525 4.980000e-118 435.0
32 TraesCS4A01G394900 chr6A 87.293 362 43 3 1 361 498036711 498037070 8.390000e-111 411.0
33 TraesCS4A01G394900 chr1A 90.559 286 27 0 1 286 354961542 354961827 2.370000e-101 379.0
34 TraesCS4A01G394900 chr1A 91.176 68 6 0 1338 1405 510187370 510187437 3.450000e-15 93.5
35 TraesCS4A01G394900 chr4B 88.235 68 8 0 1338 1405 459954506 459954439 7.480000e-12 82.4
36 TraesCS4A01G394900 chr5D 100.000 32 0 0 1257 1288 497839587 497839618 3.500000e-05 60.2
37 TraesCS4A01G394900 chr1B 100.000 31 0 0 1257 1287 158172401 158172371 1.260000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G394900 chr4A 669896779 669900029 3250 False 6004.000000 6004 100.000000 1 3251 1 chr4A.!!$F2 3250
1 TraesCS4A01G394900 chr4A 669879135 669879895 760 False 1362.000000 1362 98.949000 1 761 1 chr4A.!!$F1 760
2 TraesCS4A01G394900 chr7D 54352641 54355042 2401 False 901.666667 1583 88.491333 376 2767 3 chr7D.!!$F4 2391
3 TraesCS4A01G394900 chr7D 54310442 54311674 1232 False 784.500000 1190 88.561000 863 2261 2 chr7D.!!$F1 1398
4 TraesCS4A01G394900 chr7D 54335962 54337371 1409 False 750.500000 1146 86.523500 863 2258 2 chr7D.!!$F3 1395
5 TraesCS4A01G394900 chr7D 54319098 54320985 1887 False 700.666667 1293 87.238000 918 2781 3 chr7D.!!$F2 1863
6 TraesCS4A01G394900 chrUn 49126750 49127507 757 False 1352.000000 1352 98.817000 1 761 1 chrUn.!!$F1 760
7 TraesCS4A01G394900 chrUn 49139626 49140740 1114 False 735.500000 1168 89.109000 986 2256 2 chrUn.!!$F4 1270
8 TraesCS4A01G394900 chrUn 49112787 49113901 1114 False 730.000000 1157 88.991500 986 2256 2 chrUn.!!$F3 1270
9 TraesCS4A01G394900 chrUn 384623921 384625035 1114 True 730.000000 1157 88.991500 986 2256 2 chrUn.!!$R1 1270
10 TraesCS4A01G394900 chr7A 57863756 57865164 1408 False 804.000000 1227 87.620500 863 2261 2 chr7A.!!$F2 1398
11 TraesCS4A01G394900 chr7A 57802461 57804404 1943 False 708.000000 1205 88.106000 986 2879 3 chr7A.!!$F1 1893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1027 0.527385 CAGGCACTCGAGCTAGCTTC 60.527 60.0 20.42 11.11 34.6 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2883 3062 0.182775 AACTCTTTCACGGGTGCCTT 59.817 50.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
801 819 0.719465 CGACGATTGGTGGCAACTAC 59.281 55.000 3.27 0.00 37.61 2.73
825 845 2.291741 GCCGGTGTACGTAGCTAGTAAT 59.708 50.000 1.90 0.00 42.24 1.89
831 851 5.277047 GTGTACGTAGCTAGTAATGTTCCC 58.723 45.833 0.00 0.00 0.00 3.97
833 853 5.595542 TGTACGTAGCTAGTAATGTTCCCAT 59.404 40.000 0.00 0.00 0.00 4.00
839 859 4.080356 AGCTAGTAATGTTCCCATGAAGCA 60.080 41.667 0.00 0.00 30.54 3.91
842 862 4.406456 AGTAATGTTCCCATGAAGCACAA 58.594 39.130 0.00 0.00 0.00 3.33
887 910 4.041075 TCGAATGCCCACCTATATAAGCAA 59.959 41.667 0.00 0.00 33.35 3.91
910 933 7.095649 GCAACATCATGCTCGAAGTATATACAA 60.096 37.037 15.18 0.00 43.06 2.41
935 958 2.597340 CAGGCATTCCCGACCCAT 59.403 61.111 0.00 0.00 39.21 4.00
937 960 2.203351 GGCATTCCCGACCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
954 977 2.290287 CCATCGGTCACCTCCCACA 61.290 63.158 0.00 0.00 0.00 4.17
994 1027 0.527385 CAGGCACTCGAGCTAGCTTC 60.527 60.000 20.42 11.11 34.60 3.86
1008 1041 2.088178 GCTTCAAACAATGGCGGCG 61.088 57.895 0.51 0.51 0.00 6.46
1030 1066 2.626582 GCTCAGAAGCTGCAAGTGT 58.373 52.632 1.02 0.00 45.55 3.55
1038 1074 2.492773 GCTGCAAGTGTTGGTGGCT 61.493 57.895 0.00 0.00 35.30 4.75
1040 1076 0.031178 CTGCAAGTGTTGGTGGCTTC 59.969 55.000 0.00 0.00 0.00 3.86
1228 1264 0.520827 CTGCTTCGTCGAGGTACGTC 60.521 60.000 6.22 5.47 43.31 4.34
1249 1285 4.567159 GTCCTACTCACGGCAAGAAATAAG 59.433 45.833 0.00 0.00 0.00 1.73
1295 1374 9.543783 GTTCGATTAATCAGTTAACTTCCCTAT 57.456 33.333 15.57 0.00 32.91 2.57
1319 1398 4.151335 TCGTAGAGTTATCGAATAGCCGAC 59.849 45.833 0.00 0.00 41.70 4.79
1374 1489 2.106857 ACCTATTCAACAACCACCCGAA 59.893 45.455 0.00 0.00 0.00 4.30
1394 1509 4.031426 CGAACAGCTACCAGTTAACGATTC 59.969 45.833 0.00 0.00 0.00 2.52
1543 1661 2.511145 CGCCAGAGAAGCTCAGCC 60.511 66.667 0.00 0.00 31.33 4.85
1554 1672 3.365265 CTCAGCCCGCCCAACAAC 61.365 66.667 0.00 0.00 0.00 3.32
1596 1714 2.484417 GCTGATCGACACCATCAAGGAT 60.484 50.000 0.00 0.00 41.22 3.24
1629 1747 1.367471 CTGCCCAGACGTTGTCTCA 59.633 57.895 0.00 0.00 41.37 3.27
1707 1825 2.741092 GTGGACTTCGAGGTGCCA 59.259 61.111 16.35 14.20 0.00 4.92
1763 1881 3.491652 GCCGCTCAAGTTCCTCGC 61.492 66.667 0.00 0.00 0.00 5.03
1818 1936 1.172812 GCTTTGTCGTCAAGGGCCTT 61.173 55.000 14.48 14.48 34.88 4.35
1929 2047 4.814294 GACATCGACGGCGGCCTT 62.814 66.667 12.58 7.81 38.28 4.35
2082 2200 3.573772 CTTCACCTCTGACGCGGCA 62.574 63.158 17.01 17.01 0.00 5.69
2187 2305 1.754234 GGTGAAGATGGCCGGCATT 60.754 57.895 30.85 16.87 0.00 3.56
2261 2402 6.042777 TCAACTACTACTAAGTGCATGCATC 58.957 40.000 25.64 17.07 36.36 3.91
2262 2403 5.598416 ACTACTACTAAGTGCATGCATCA 57.402 39.130 25.64 11.00 36.36 3.07
2263 2404 6.166984 ACTACTACTAAGTGCATGCATCAT 57.833 37.500 25.64 15.22 36.36 2.45
2266 2407 5.188434 ACTACTAAGTGCATGCATCATTGT 58.812 37.500 25.64 19.85 33.57 2.71
2287 2439 3.581024 TGCATCTCCATTGTTTGCTTC 57.419 42.857 0.00 0.00 34.47 3.86
2303 2455 0.107993 CTTCCATCCTGCAAGCGAGA 60.108 55.000 0.00 0.00 0.00 4.04
2304 2456 0.107993 TTCCATCCTGCAAGCGAGAG 60.108 55.000 0.00 0.00 0.00 3.20
2320 2472 2.915463 CGAGAGTTACCGCTGTAAAGTG 59.085 50.000 1.99 0.00 38.62 3.16
2324 2476 2.366266 AGTTACCGCTGTAAAGTGTGGA 59.634 45.455 1.99 0.00 38.62 4.02
2325 2477 2.443887 TACCGCTGTAAAGTGTGGAC 57.556 50.000 0.00 0.00 37.30 4.02
2326 2478 0.756903 ACCGCTGTAAAGTGTGGACT 59.243 50.000 0.00 0.00 37.30 3.85
2350 2502 9.023962 ACTTTCTTTTAGCATCCATCATTGTTA 57.976 29.630 0.00 0.00 0.00 2.41
2397 2550 0.451783 ATTCTCGCCAACGGAATTGC 59.548 50.000 0.00 0.00 36.45 3.56
2401 2554 2.387445 CGCCAACGGAATTGCTCGA 61.387 57.895 0.00 0.00 36.93 4.04
2443 2596 7.193377 CTGCAAGCCAATGTTCTTTTATTTT 57.807 32.000 0.00 0.00 0.00 1.82
2445 2598 6.765036 TGCAAGCCAATGTTCTTTTATTTTGA 59.235 30.769 0.00 0.00 0.00 2.69
2475 2628 4.370620 GTTACACTTCTGCTGTAACGTG 57.629 45.455 9.38 6.51 42.35 4.49
2476 2629 2.596904 ACACTTCTGCTGTAACGTGT 57.403 45.000 0.00 0.00 0.00 4.49
2477 2630 2.901249 ACACTTCTGCTGTAACGTGTT 58.099 42.857 0.00 0.00 32.23 3.32
2478 2631 3.267483 ACACTTCTGCTGTAACGTGTTT 58.733 40.909 0.00 0.00 32.23 2.83
2479 2632 3.687698 ACACTTCTGCTGTAACGTGTTTT 59.312 39.130 0.00 0.00 32.23 2.43
2480 2633 4.028383 CACTTCTGCTGTAACGTGTTTTG 58.972 43.478 0.00 0.00 0.00 2.44
2481 2634 3.936453 ACTTCTGCTGTAACGTGTTTTGA 59.064 39.130 0.00 0.00 0.00 2.69
2482 2635 4.393680 ACTTCTGCTGTAACGTGTTTTGAA 59.606 37.500 0.00 0.00 0.00 2.69
2483 2636 4.267357 TCTGCTGTAACGTGTTTTGAAC 57.733 40.909 0.00 0.00 0.00 3.18
2484 2637 3.685272 TCTGCTGTAACGTGTTTTGAACA 59.315 39.130 0.00 0.00 39.52 3.18
2485 2638 4.154375 TCTGCTGTAACGTGTTTTGAACAA 59.846 37.500 0.00 0.00 44.16 2.83
2486 2639 4.795268 TGCTGTAACGTGTTTTGAACAAA 58.205 34.783 0.00 0.00 44.16 2.83
2487 2640 4.854291 TGCTGTAACGTGTTTTGAACAAAG 59.146 37.500 0.00 0.00 44.16 2.77
2496 2664 6.073548 ACGTGTTTTGAACAAAGATTTTGCAA 60.074 30.769 0.00 0.00 44.16 4.08
2522 2690 0.253044 ACATGACATCTCAACCCCCG 59.747 55.000 0.00 0.00 0.00 5.73
2560 2737 1.126846 GTTGCCGAGAGTCAAATCACG 59.873 52.381 0.00 0.00 33.75 4.35
2561 2738 0.317160 TGCCGAGAGTCAAATCACGT 59.683 50.000 0.00 0.00 32.33 4.49
2645 2822 0.179059 TGCCGTTGTTGAGAGCAAGA 60.179 50.000 0.00 0.00 34.01 3.02
2650 2827 4.320202 GCCGTTGTTGAGAGCAAGATAAAA 60.320 41.667 0.00 0.00 34.01 1.52
2651 2828 5.619981 GCCGTTGTTGAGAGCAAGATAAAAT 60.620 40.000 0.00 0.00 34.01 1.82
2680 2857 3.673338 GGCAAACAAAATAAACTCGGCTC 59.327 43.478 0.00 0.00 0.00 4.70
2681 2858 3.360758 GCAAACAAAATAAACTCGGCTCG 59.639 43.478 0.00 0.00 0.00 5.03
2690 2867 1.919956 AACTCGGCTCGTACGGACTG 61.920 60.000 16.52 12.71 0.00 3.51
2714 2891 0.742281 GAGCTTCTCGCATTGGCAGA 60.742 55.000 0.00 0.00 42.61 4.26
2734 2911 4.150098 CAGACCGTACTCAGCAAAGTTTAC 59.850 45.833 0.00 0.00 0.00 2.01
2763 2940 3.215975 GGCAACAAGGGTAGTTTGTGTA 58.784 45.455 0.00 0.00 38.67 2.90
2764 2941 3.004002 GGCAACAAGGGTAGTTTGTGTAC 59.996 47.826 0.00 0.00 38.67 2.90
2767 2946 5.365619 CAACAAGGGTAGTTTGTGTACTCT 58.634 41.667 0.00 0.00 38.67 3.24
2788 2967 2.813754 TGTTATGGCAGACTGAGTTTGC 59.186 45.455 18.67 18.67 41.91 3.68
2789 2968 1.725641 TATGGCAGACTGAGTTTGCG 58.274 50.000 19.87 0.00 43.26 4.85
2819 2998 4.616181 GCACTACGAAACTTGGCATAAT 57.384 40.909 0.00 0.00 0.00 1.28
2826 3005 5.664870 CGAAACTTGGCATAATTTTCGTC 57.335 39.130 20.10 0.00 42.13 4.20
2830 3009 7.044966 CGAAACTTGGCATAATTTTCGTCATAC 60.045 37.037 20.10 0.00 42.13 2.39
2833 3012 7.771183 ACTTGGCATAATTTTCGTCATACATT 58.229 30.769 0.00 0.00 0.00 2.71
2885 3064 4.778143 CCGAGTTCCCGGCCCAAG 62.778 72.222 0.00 0.00 43.25 3.61
2886 3065 4.778143 CGAGTTCCCGGCCCAAGG 62.778 72.222 0.00 0.00 0.00 3.61
2897 3076 2.203422 CCCAAGGCACCCGTGAAA 60.203 61.111 0.00 0.00 35.05 2.69
2898 3077 2.268076 CCCAAGGCACCCGTGAAAG 61.268 63.158 0.00 0.00 35.05 2.62
2899 3078 1.228124 CCAAGGCACCCGTGAAAGA 60.228 57.895 0.00 0.00 35.05 2.52
2900 3079 1.237285 CCAAGGCACCCGTGAAAGAG 61.237 60.000 0.00 0.00 35.05 2.85
2901 3080 0.535102 CAAGGCACCCGTGAAAGAGT 60.535 55.000 0.00 0.00 35.05 3.24
2902 3081 0.182775 AAGGCACCCGTGAAAGAGTT 59.817 50.000 0.00 0.00 0.00 3.01
2903 3082 0.250338 AGGCACCCGTGAAAGAGTTC 60.250 55.000 0.00 0.00 0.00 3.01
2904 3083 1.235281 GGCACCCGTGAAAGAGTTCC 61.235 60.000 0.00 0.00 32.28 3.62
2905 3084 0.250338 GCACCCGTGAAAGAGTTCCT 60.250 55.000 0.00 0.00 32.28 3.36
2906 3085 1.814248 GCACCCGTGAAAGAGTTCCTT 60.814 52.381 0.00 0.00 36.47 3.36
2907 3086 2.549349 GCACCCGTGAAAGAGTTCCTTA 60.549 50.000 0.00 0.00 34.00 2.69
2908 3087 3.868754 GCACCCGTGAAAGAGTTCCTTAT 60.869 47.826 0.00 0.00 34.00 1.73
2909 3088 4.622220 GCACCCGTGAAAGAGTTCCTTATA 60.622 45.833 0.00 0.00 34.00 0.98
2910 3089 5.671493 CACCCGTGAAAGAGTTCCTTATAT 58.329 41.667 0.00 0.00 34.00 0.86
2911 3090 6.684613 GCACCCGTGAAAGAGTTCCTTATATA 60.685 42.308 0.00 0.00 34.00 0.86
2912 3091 6.700520 CACCCGTGAAAGAGTTCCTTATATAC 59.299 42.308 0.00 0.00 34.00 1.47
2913 3092 6.381994 ACCCGTGAAAGAGTTCCTTATATACA 59.618 38.462 0.00 0.00 34.00 2.29
2914 3093 6.924060 CCCGTGAAAGAGTTCCTTATATACAG 59.076 42.308 0.00 0.00 34.00 2.74
2915 3094 6.924060 CCGTGAAAGAGTTCCTTATATACAGG 59.076 42.308 5.18 5.18 34.00 4.00
2916 3095 7.417570 CCGTGAAAGAGTTCCTTATATACAGGT 60.418 40.741 9.44 0.00 34.00 4.00
2917 3096 8.627403 CGTGAAAGAGTTCCTTATATACAGGTA 58.373 37.037 9.44 0.00 34.00 3.08
2918 3097 9.747293 GTGAAAGAGTTCCTTATATACAGGTAC 57.253 37.037 10.22 10.22 34.00 3.34
2919 3098 9.483489 TGAAAGAGTTCCTTATATACAGGTACA 57.517 33.333 15.97 0.00 34.84 2.90
2931 3110 4.282399 GGTACAAACCGCGGCTTA 57.718 55.556 28.58 8.39 35.62 3.09
2932 3111 2.771435 GGTACAAACCGCGGCTTAT 58.229 52.632 28.58 12.14 35.62 1.73
2933 3112 0.654160 GGTACAAACCGCGGCTTATC 59.346 55.000 28.58 12.51 35.62 1.75
2934 3113 1.648504 GTACAAACCGCGGCTTATCT 58.351 50.000 28.58 7.78 0.00 1.98
2935 3114 2.481795 GGTACAAACCGCGGCTTATCTA 60.482 50.000 28.58 6.73 35.62 1.98
2936 3115 2.389962 ACAAACCGCGGCTTATCTAA 57.610 45.000 28.58 0.00 0.00 2.10
2937 3116 2.914059 ACAAACCGCGGCTTATCTAAT 58.086 42.857 28.58 0.00 0.00 1.73
2938 3117 3.275999 ACAAACCGCGGCTTATCTAATT 58.724 40.909 28.58 5.37 0.00 1.40
2939 3118 3.692593 ACAAACCGCGGCTTATCTAATTT 59.307 39.130 28.58 12.13 0.00 1.82
2940 3119 4.201881 ACAAACCGCGGCTTATCTAATTTC 60.202 41.667 28.58 0.00 0.00 2.17
2941 3120 3.188159 ACCGCGGCTTATCTAATTTCA 57.812 42.857 28.58 0.00 0.00 2.69
2942 3121 3.537580 ACCGCGGCTTATCTAATTTCAA 58.462 40.909 28.58 0.00 0.00 2.69
2943 3122 3.942748 ACCGCGGCTTATCTAATTTCAAA 59.057 39.130 28.58 0.00 0.00 2.69
2944 3123 4.578928 ACCGCGGCTTATCTAATTTCAAAT 59.421 37.500 28.58 0.00 0.00 2.32
2945 3124 4.911610 CCGCGGCTTATCTAATTTCAAATG 59.088 41.667 14.67 0.00 0.00 2.32
2946 3125 5.505654 CCGCGGCTTATCTAATTTCAAATGT 60.506 40.000 14.67 0.00 0.00 2.71
2947 3126 5.971202 CGCGGCTTATCTAATTTCAAATGTT 59.029 36.000 0.00 0.00 0.00 2.71
2948 3127 6.472163 CGCGGCTTATCTAATTTCAAATGTTT 59.528 34.615 0.00 0.00 0.00 2.83
2949 3128 7.305418 CGCGGCTTATCTAATTTCAAATGTTTC 60.305 37.037 0.00 0.00 0.00 2.78
2950 3129 7.702348 GCGGCTTATCTAATTTCAAATGTTTCT 59.298 33.333 0.00 0.00 0.00 2.52
2951 3130 9.573133 CGGCTTATCTAATTTCAAATGTTTCTT 57.427 29.630 0.00 0.00 0.00 2.52
2968 3147 8.839310 ATGTTTCTTATACATACTGATCTGCC 57.161 34.615 0.00 0.00 34.59 4.85
2969 3148 7.791029 TGTTTCTTATACATACTGATCTGCCA 58.209 34.615 0.00 0.00 0.00 4.92
2970 3149 7.710907 TGTTTCTTATACATACTGATCTGCCAC 59.289 37.037 0.00 0.00 0.00 5.01
2971 3150 6.346477 TCTTATACATACTGATCTGCCACC 57.654 41.667 0.00 0.00 0.00 4.61
2972 3151 3.667497 ATACATACTGATCTGCCACCG 57.333 47.619 0.00 0.00 0.00 4.94
2973 3152 1.485124 ACATACTGATCTGCCACCGA 58.515 50.000 0.00 0.00 0.00 4.69
2974 3153 1.137086 ACATACTGATCTGCCACCGAC 59.863 52.381 0.00 0.00 0.00 4.79
2975 3154 1.410517 CATACTGATCTGCCACCGACT 59.589 52.381 0.00 0.00 0.00 4.18
2976 3155 1.103803 TACTGATCTGCCACCGACTC 58.896 55.000 0.00 0.00 0.00 3.36
2977 3156 1.142748 CTGATCTGCCACCGACTCC 59.857 63.158 0.00 0.00 0.00 3.85
2978 3157 1.305297 TGATCTGCCACCGACTCCT 60.305 57.895 0.00 0.00 0.00 3.69
2979 3158 1.323271 TGATCTGCCACCGACTCCTC 61.323 60.000 0.00 0.00 0.00 3.71
2980 3159 2.022240 GATCTGCCACCGACTCCTCC 62.022 65.000 0.00 0.00 0.00 4.30
2981 3160 2.522198 ATCTGCCACCGACTCCTCCT 62.522 60.000 0.00 0.00 0.00 3.69
2982 3161 2.680352 TGCCACCGACTCCTCCTC 60.680 66.667 0.00 0.00 0.00 3.71
2983 3162 3.462678 GCCACCGACTCCTCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
2984 3163 2.760385 CCACCGACTCCTCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
2985 3164 2.760385 CACCGACTCCTCCTCCCC 60.760 72.222 0.00 0.00 0.00 4.81
2986 3165 3.273654 ACCGACTCCTCCTCCCCA 61.274 66.667 0.00 0.00 0.00 4.96
2987 3166 2.283809 CCGACTCCTCCTCCCCAT 59.716 66.667 0.00 0.00 0.00 4.00
2988 3167 1.834822 CCGACTCCTCCTCCCCATC 60.835 68.421 0.00 0.00 0.00 3.51
2989 3168 2.196925 CGACTCCTCCTCCCCATCG 61.197 68.421 0.00 0.00 0.00 3.84
2990 3169 2.444895 ACTCCTCCTCCCCATCGC 60.445 66.667 0.00 0.00 0.00 4.58
2991 3170 2.123077 CTCCTCCTCCCCATCGCT 60.123 66.667 0.00 0.00 0.00 4.93
2992 3171 2.444706 TCCTCCTCCCCATCGCTG 60.445 66.667 0.00 0.00 0.00 5.18
2993 3172 4.247380 CCTCCTCCCCATCGCTGC 62.247 72.222 0.00 0.00 0.00 5.25
2994 3173 4.247380 CTCCTCCCCATCGCTGCC 62.247 72.222 0.00 0.00 0.00 4.85
3010 3189 4.579384 CCGTGCCACCCACACCTT 62.579 66.667 0.00 0.00 44.91 3.50
3011 3190 2.978010 CGTGCCACCCACACCTTC 60.978 66.667 0.00 0.00 44.91 3.46
3012 3191 2.515901 GTGCCACCCACACCTTCT 59.484 61.111 0.00 0.00 44.06 2.85
3013 3192 1.600916 GTGCCACCCACACCTTCTC 60.601 63.158 0.00 0.00 44.06 2.87
3014 3193 2.358737 GCCACCCACACCTTCTCG 60.359 66.667 0.00 0.00 0.00 4.04
3015 3194 2.358737 CCACCCACACCTTCTCGC 60.359 66.667 0.00 0.00 0.00 5.03
3016 3195 2.425592 CACCCACACCTTCTCGCA 59.574 61.111 0.00 0.00 0.00 5.10
3017 3196 1.961277 CACCCACACCTTCTCGCAC 60.961 63.158 0.00 0.00 0.00 5.34
3018 3197 2.425592 CCCACACCTTCTCGCACA 59.574 61.111 0.00 0.00 0.00 4.57
3019 3198 1.961277 CCCACACCTTCTCGCACAC 60.961 63.158 0.00 0.00 0.00 3.82
3020 3199 1.961277 CCACACCTTCTCGCACACC 60.961 63.158 0.00 0.00 0.00 4.16
3021 3200 1.961277 CACACCTTCTCGCACACCC 60.961 63.158 0.00 0.00 0.00 4.61
3022 3201 2.738521 CACCTTCTCGCACACCCG 60.739 66.667 0.00 0.00 0.00 5.28
3023 3202 3.231736 ACCTTCTCGCACACCCGT 61.232 61.111 0.00 0.00 0.00 5.28
3024 3203 2.432628 CCTTCTCGCACACCCGTC 60.433 66.667 0.00 0.00 0.00 4.79
3025 3204 2.805353 CTTCTCGCACACCCGTCG 60.805 66.667 0.00 0.00 0.00 5.12
3031 3210 3.112709 GCACACCCGTCGCTTCTC 61.113 66.667 0.00 0.00 0.00 2.87
3032 3211 2.432628 CACACCCGTCGCTTCTCC 60.433 66.667 0.00 0.00 0.00 3.71
3033 3212 2.600769 ACACCCGTCGCTTCTCCT 60.601 61.111 0.00 0.00 0.00 3.69
3034 3213 2.182030 CACCCGTCGCTTCTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
3035 3214 3.069318 ACCCGTCGCTTCTCCTCC 61.069 66.667 0.00 0.00 0.00 4.30
3036 3215 4.194720 CCCGTCGCTTCTCCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
3037 3216 4.194720 CCGTCGCTTCTCCTCCGG 62.195 72.222 0.00 0.00 0.00 5.14
3038 3217 4.856607 CGTCGCTTCTCCTCCGGC 62.857 72.222 0.00 0.00 0.00 6.13
3039 3218 4.516195 GTCGCTTCTCCTCCGGCC 62.516 72.222 0.00 0.00 0.00 6.13
3042 3221 4.516195 GCTTCTCCTCCGGCCGTC 62.516 72.222 26.12 0.00 0.00 4.79
3043 3222 2.756283 CTTCTCCTCCGGCCGTCT 60.756 66.667 26.12 0.00 0.00 4.18
3044 3223 2.754658 TTCTCCTCCGGCCGTCTC 60.755 66.667 26.12 0.00 0.00 3.36
3045 3224 4.816984 TCTCCTCCGGCCGTCTCC 62.817 72.222 26.12 0.00 0.00 3.71
3055 3234 4.154347 CCGTCTCCCCTGCTGCTC 62.154 72.222 0.00 0.00 0.00 4.26
3056 3235 4.154347 CGTCTCCCCTGCTGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
3057 3236 2.686835 GTCTCCCCTGCTGCTCCT 60.687 66.667 0.00 0.00 0.00 3.69
3058 3237 2.364842 TCTCCCCTGCTGCTCCTC 60.365 66.667 0.00 0.00 0.00 3.71
3059 3238 2.365370 CTCCCCTGCTGCTCCTCT 60.365 66.667 0.00 0.00 0.00 3.69
3060 3239 2.364842 TCCCCTGCTGCTCCTCTC 60.365 66.667 0.00 0.00 0.00 3.20
3061 3240 3.478274 CCCCTGCTGCTCCTCTCC 61.478 72.222 0.00 0.00 0.00 3.71
3062 3241 3.847602 CCCTGCTGCTCCTCTCCG 61.848 72.222 0.00 0.00 0.00 4.63
3063 3242 3.073735 CCTGCTGCTCCTCTCCGT 61.074 66.667 0.00 0.00 0.00 4.69
3064 3243 2.493973 CTGCTGCTCCTCTCCGTC 59.506 66.667 0.00 0.00 0.00 4.79
3065 3244 3.408501 CTGCTGCTCCTCTCCGTCG 62.409 68.421 0.00 0.00 0.00 5.12
3066 3245 4.200283 GCTGCTCCTCTCCGTCGG 62.200 72.222 4.39 4.39 0.00 4.79
3067 3246 2.752238 CTGCTCCTCTCCGTCGGT 60.752 66.667 11.88 0.00 0.00 4.69
3068 3247 3.057547 CTGCTCCTCTCCGTCGGTG 62.058 68.421 11.88 9.31 0.00 4.94
3069 3248 4.500116 GCTCCTCTCCGTCGGTGC 62.500 72.222 11.88 4.07 33.35 5.01
3070 3249 2.752238 CTCCTCTCCGTCGGTGCT 60.752 66.667 11.88 0.00 0.00 4.40
3071 3250 1.451567 CTCCTCTCCGTCGGTGCTA 60.452 63.158 11.88 0.00 0.00 3.49
3072 3251 1.440938 CTCCTCTCCGTCGGTGCTAG 61.441 65.000 11.88 0.80 0.00 3.42
3073 3252 2.409651 CTCTCCGTCGGTGCTAGC 59.590 66.667 11.88 8.10 0.00 3.42
3074 3253 2.045242 TCTCCGTCGGTGCTAGCT 60.045 61.111 17.23 0.00 0.00 3.32
3075 3254 2.054140 CTCTCCGTCGGTGCTAGCTC 62.054 65.000 17.23 12.62 0.00 4.09
3076 3255 3.127352 CTCCGTCGGTGCTAGCTCC 62.127 68.421 23.22 23.22 0.00 4.70
3077 3256 3.141488 CCGTCGGTGCTAGCTCCT 61.141 66.667 28.22 0.00 0.00 3.69
3078 3257 2.409651 CGTCGGTGCTAGCTCCTC 59.590 66.667 28.22 20.47 0.00 3.71
3079 3258 2.809010 GTCGGTGCTAGCTCCTCC 59.191 66.667 28.22 16.99 0.00 4.30
3080 3259 2.442272 TCGGTGCTAGCTCCTCCC 60.442 66.667 28.22 13.92 0.00 4.30
3081 3260 3.541713 CGGTGCTAGCTCCTCCCC 61.542 72.222 28.22 12.41 0.00 4.81
3082 3261 2.041405 GGTGCTAGCTCCTCCCCT 60.041 66.667 25.25 0.00 0.00 4.79
3083 3262 1.690985 GGTGCTAGCTCCTCCCCTT 60.691 63.158 25.25 0.00 0.00 3.95
3084 3263 1.691195 GGTGCTAGCTCCTCCCCTTC 61.691 65.000 25.25 0.00 0.00 3.46
3085 3264 1.383248 TGCTAGCTCCTCCCCTTCC 60.383 63.158 17.23 0.00 0.00 3.46
3086 3265 2.503382 GCTAGCTCCTCCCCTTCCG 61.503 68.421 7.70 0.00 0.00 4.30
3087 3266 1.834822 CTAGCTCCTCCCCTTCCGG 60.835 68.421 0.00 0.00 0.00 5.14
3106 3285 2.669569 GGCGCACTCTGGCTGAAA 60.670 61.111 10.83 0.00 0.00 2.69
3107 3286 2.558313 GCGCACTCTGGCTGAAAC 59.442 61.111 0.30 0.00 0.00 2.78
3108 3287 2.970974 GCGCACTCTGGCTGAAACC 61.971 63.158 0.30 0.00 0.00 3.27
3109 3288 2.671177 CGCACTCTGGCTGAAACCG 61.671 63.158 0.00 0.00 0.00 4.44
3110 3289 2.970974 GCACTCTGGCTGAAACCGC 61.971 63.158 0.00 0.00 0.00 5.68
3111 3290 2.357517 ACTCTGGCTGAAACCGCG 60.358 61.111 0.00 0.00 0.00 6.46
3112 3291 2.357517 CTCTGGCTGAAACCGCGT 60.358 61.111 4.92 0.00 0.00 6.01
3113 3292 2.664851 TCTGGCTGAAACCGCGTG 60.665 61.111 4.92 0.00 0.00 5.34
3114 3293 4.389576 CTGGCTGAAACCGCGTGC 62.390 66.667 4.92 0.00 0.00 5.34
3116 3295 4.683334 GGCTGAAACCGCGTGCAC 62.683 66.667 6.82 6.82 0.00 4.57
3117 3296 3.947841 GCTGAAACCGCGTGCACA 61.948 61.111 18.64 0.00 0.00 4.57
3118 3297 2.945984 CTGAAACCGCGTGCACAT 59.054 55.556 18.64 0.00 0.00 3.21
3119 3298 1.282570 CTGAAACCGCGTGCACATT 59.717 52.632 18.64 2.13 0.00 2.71
3120 3299 0.725784 CTGAAACCGCGTGCACATTC 60.726 55.000 18.64 12.43 0.00 2.67
3121 3300 1.163420 TGAAACCGCGTGCACATTCT 61.163 50.000 18.64 0.00 0.00 2.40
3122 3301 0.793861 GAAACCGCGTGCACATTCTA 59.206 50.000 18.64 0.00 0.00 2.10
3123 3302 0.796312 AAACCGCGTGCACATTCTAG 59.204 50.000 18.64 0.00 0.00 2.43
3124 3303 0.037697 AACCGCGTGCACATTCTAGA 60.038 50.000 18.64 0.00 0.00 2.43
3125 3304 0.736325 ACCGCGTGCACATTCTAGAC 60.736 55.000 18.64 0.00 0.00 2.59
3126 3305 1.625870 CGCGTGCACATTCTAGACG 59.374 57.895 18.64 0.00 0.00 4.18
3127 3306 0.796870 CGCGTGCACATTCTAGACGA 60.797 55.000 18.64 0.00 31.71 4.20
3128 3307 0.640768 GCGTGCACATTCTAGACGAC 59.359 55.000 18.64 0.00 31.71 4.34
3129 3308 1.732732 GCGTGCACATTCTAGACGACT 60.733 52.381 18.64 0.00 31.71 4.18
3130 3309 2.596452 CGTGCACATTCTAGACGACTT 58.404 47.619 18.64 0.00 31.71 3.01
3131 3310 2.987149 CGTGCACATTCTAGACGACTTT 59.013 45.455 18.64 0.00 31.71 2.66
3132 3311 3.059570 CGTGCACATTCTAGACGACTTTC 59.940 47.826 18.64 0.00 31.71 2.62
3133 3312 3.368236 GTGCACATTCTAGACGACTTTCC 59.632 47.826 13.17 0.00 0.00 3.13
3134 3313 3.258372 TGCACATTCTAGACGACTTTCCT 59.742 43.478 0.00 0.00 0.00 3.36
3135 3314 3.860536 GCACATTCTAGACGACTTTCCTC 59.139 47.826 0.00 0.00 0.00 3.71
3136 3315 4.425520 CACATTCTAGACGACTTTCCTCC 58.574 47.826 0.00 0.00 0.00 4.30
3137 3316 4.082190 CACATTCTAGACGACTTTCCTCCA 60.082 45.833 0.00 0.00 0.00 3.86
3138 3317 4.712337 ACATTCTAGACGACTTTCCTCCAT 59.288 41.667 0.00 0.00 0.00 3.41
3139 3318 5.892119 ACATTCTAGACGACTTTCCTCCATA 59.108 40.000 0.00 0.00 0.00 2.74
3140 3319 6.551601 ACATTCTAGACGACTTTCCTCCATAT 59.448 38.462 0.00 0.00 0.00 1.78
3141 3320 7.724506 ACATTCTAGACGACTTTCCTCCATATA 59.275 37.037 0.00 0.00 0.00 0.86
3142 3321 8.577296 CATTCTAGACGACTTTCCTCCATATAA 58.423 37.037 0.00 0.00 0.00 0.98
3143 3322 7.747155 TCTAGACGACTTTCCTCCATATAAG 57.253 40.000 0.00 0.00 0.00 1.73
3144 3323 7.515586 TCTAGACGACTTTCCTCCATATAAGA 58.484 38.462 0.00 0.00 0.00 2.10
3145 3324 6.394025 AGACGACTTTCCTCCATATAAGAC 57.606 41.667 0.00 0.00 0.00 3.01
3146 3325 6.130569 AGACGACTTTCCTCCATATAAGACT 58.869 40.000 0.00 0.00 0.00 3.24
3147 3326 6.263617 AGACGACTTTCCTCCATATAAGACTC 59.736 42.308 0.00 0.00 0.00 3.36
3148 3327 6.130569 ACGACTTTCCTCCATATAAGACTCT 58.869 40.000 0.00 0.00 0.00 3.24
3149 3328 6.608002 ACGACTTTCCTCCATATAAGACTCTT 59.392 38.462 0.00 0.00 0.00 2.85
3150 3329 7.142680 CGACTTTCCTCCATATAAGACTCTTC 58.857 42.308 0.00 0.00 0.00 2.87
3151 3330 7.368198 ACTTTCCTCCATATAAGACTCTTCC 57.632 40.000 0.00 0.00 0.00 3.46
3152 3331 7.136203 ACTTTCCTCCATATAAGACTCTTCCT 58.864 38.462 0.00 0.00 0.00 3.36
3153 3332 8.290277 ACTTTCCTCCATATAAGACTCTTCCTA 58.710 37.037 0.00 0.00 0.00 2.94
3154 3333 9.320295 CTTTCCTCCATATAAGACTCTTCCTAT 57.680 37.037 0.00 0.00 0.00 2.57
3155 3334 9.676129 TTTCCTCCATATAAGACTCTTCCTATT 57.324 33.333 0.00 0.00 0.00 1.73
3156 3335 9.676129 TTCCTCCATATAAGACTCTTCCTATTT 57.324 33.333 0.00 0.00 0.00 1.40
3157 3336 9.094578 TCCTCCATATAAGACTCTTCCTATTTG 57.905 37.037 0.00 0.00 0.00 2.32
3158 3337 9.094578 CCTCCATATAAGACTCTTCCTATTTGA 57.905 37.037 0.00 0.00 0.00 2.69
3186 3365 9.836076 AATTTAAAACGTCTTATAGCTCAAACC 57.164 29.630 0.00 0.00 0.00 3.27
3187 3366 5.526010 AAAACGTCTTATAGCTCAAACCG 57.474 39.130 0.00 0.00 0.00 4.44
3188 3367 3.863142 ACGTCTTATAGCTCAAACCGT 57.137 42.857 0.00 0.00 0.00 4.83
3189 3368 4.184079 ACGTCTTATAGCTCAAACCGTT 57.816 40.909 0.00 0.00 0.00 4.44
3190 3369 3.924686 ACGTCTTATAGCTCAAACCGTTG 59.075 43.478 0.00 0.00 35.95 4.10
3191 3370 3.306166 CGTCTTATAGCTCAAACCGTTGG 59.694 47.826 0.00 0.00 35.29 3.77
3192 3371 4.251268 GTCTTATAGCTCAAACCGTTGGT 58.749 43.478 0.00 0.00 37.65 3.67
3193 3372 4.329256 GTCTTATAGCTCAAACCGTTGGTC 59.671 45.833 0.00 0.00 33.12 4.02
3194 3373 4.222145 TCTTATAGCTCAAACCGTTGGTCT 59.778 41.667 0.00 0.00 33.12 3.85
3195 3374 2.163818 TAGCTCAAACCGTTGGTCTG 57.836 50.000 0.00 0.00 33.12 3.51
3196 3375 0.468226 AGCTCAAACCGTTGGTCTGA 59.532 50.000 0.00 0.00 33.12 3.27
3197 3376 1.072331 AGCTCAAACCGTTGGTCTGAT 59.928 47.619 0.00 0.00 31.79 2.90
3198 3377 1.880027 GCTCAAACCGTTGGTCTGATT 59.120 47.619 0.00 0.00 31.79 2.57
3199 3378 2.293399 GCTCAAACCGTTGGTCTGATTT 59.707 45.455 0.00 0.00 31.79 2.17
3200 3379 3.500680 GCTCAAACCGTTGGTCTGATTTA 59.499 43.478 0.00 0.00 31.79 1.40
3201 3380 4.023536 GCTCAAACCGTTGGTCTGATTTAA 60.024 41.667 0.00 0.00 31.79 1.52
3202 3381 5.506649 GCTCAAACCGTTGGTCTGATTTAAA 60.507 40.000 0.00 0.00 31.79 1.52
3203 3382 6.452494 TCAAACCGTTGGTCTGATTTAAAA 57.548 33.333 0.00 0.00 33.12 1.52
3204 3383 7.045126 TCAAACCGTTGGTCTGATTTAAAAT 57.955 32.000 0.00 0.00 33.12 1.82
3205 3384 7.493367 TCAAACCGTTGGTCTGATTTAAAATT 58.507 30.769 0.00 0.00 33.12 1.82
3206 3385 7.982354 TCAAACCGTTGGTCTGATTTAAAATTT 59.018 29.630 0.00 0.00 33.12 1.82
3207 3386 7.707774 AACCGTTGGTCTGATTTAAAATTTG 57.292 32.000 0.00 0.00 33.12 2.32
3208 3387 6.811954 ACCGTTGGTCTGATTTAAAATTTGT 58.188 32.000 0.00 0.00 0.00 2.83
3209 3388 7.269316 ACCGTTGGTCTGATTTAAAATTTGTT 58.731 30.769 0.00 0.00 0.00 2.83
3210 3389 7.766738 ACCGTTGGTCTGATTTAAAATTTGTTT 59.233 29.630 0.00 0.00 0.00 2.83
3211 3390 8.608317 CCGTTGGTCTGATTTAAAATTTGTTTT 58.392 29.630 0.00 0.00 0.00 2.43
3212 3391 9.631639 CGTTGGTCTGATTTAAAATTTGTTTTC 57.368 29.630 0.00 0.00 0.00 2.29
3215 3394 9.103861 TGGTCTGATTTAAAATTTGTTTTCACC 57.896 29.630 0.00 0.00 0.00 4.02
3216 3395 9.103861 GGTCTGATTTAAAATTTGTTTTCACCA 57.896 29.630 0.00 0.00 0.00 4.17
3231 3410 4.924019 CCATTAGGTCCGTTGCGA 57.076 55.556 0.00 0.00 0.00 5.10
3232 3411 2.380081 CCATTAGGTCCGTTGCGAC 58.620 57.895 0.00 0.00 0.00 5.19
3245 3424 3.313274 GTTGCGACGAGACTTTCAAAA 57.687 42.857 0.00 0.00 0.00 2.44
3246 3425 3.027029 GTTGCGACGAGACTTTCAAAAC 58.973 45.455 0.00 0.00 0.00 2.43
3247 3426 2.546778 TGCGACGAGACTTTCAAAACT 58.453 42.857 0.00 0.00 0.00 2.66
3248 3427 2.933906 TGCGACGAGACTTTCAAAACTT 59.066 40.909 0.00 0.00 0.00 2.66
3249 3428 3.000925 TGCGACGAGACTTTCAAAACTTC 59.999 43.478 0.00 0.00 0.00 3.01
3250 3429 3.604085 GCGACGAGACTTTCAAAACTTCC 60.604 47.826 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.672098 AGATCCGAGTGTTGGATAGCT 58.328 47.619 0.00 0.00 46.17 3.32
801 819 4.860261 GCTACGTACACCGGCCGG 62.860 72.222 42.17 42.17 42.24 6.13
825 845 2.431247 GCCTTGTGCTTCATGGGAACA 61.431 52.381 13.11 0.00 40.43 3.18
839 859 4.433615 CATATGTTGTCGACTAGCCTTGT 58.566 43.478 17.92 0.00 0.00 3.16
842 862 2.695666 AGCATATGTTGTCGACTAGCCT 59.304 45.455 17.92 2.79 0.00 4.58
850 870 3.283256 GCATTCGAAGCATATGTTGTCG 58.717 45.455 3.35 14.71 0.00 4.35
887 910 7.433680 TGTTGTATATACTTCGAGCATGATGT 58.566 34.615 13.89 0.00 0.00 3.06
901 924 4.883083 TGCCTGCTAGCTGTTGTATATAC 58.117 43.478 17.23 5.89 0.00 1.47
910 933 1.225704 GGGAATGCCTGCTAGCTGT 59.774 57.895 17.23 0.00 0.00 4.40
935 958 1.987855 GTGGGAGGTGACCGATGGA 60.988 63.158 0.00 0.00 0.00 3.41
937 960 0.179073 GATGTGGGAGGTGACCGATG 60.179 60.000 0.00 0.00 0.00 3.84
942 965 2.114616 AGATGAGATGTGGGAGGTGAC 58.885 52.381 0.00 0.00 0.00 3.67
954 977 6.464180 GCCTGACTAAGATTGGAAGATGAGAT 60.464 42.308 0.00 0.00 0.00 2.75
994 1027 3.679738 ACCCGCCGCCATTGTTTG 61.680 61.111 0.00 0.00 0.00 2.93
1015 1051 1.027357 ACCAACACTTGCAGCTTCTG 58.973 50.000 0.00 0.00 34.12 3.02
1026 1062 4.164258 GCAGAAGCCACCAACACT 57.836 55.556 0.00 0.00 33.58 3.55
1038 1074 3.914579 GAGCAGCAGCAGGGCAGAA 62.915 63.158 3.17 0.00 45.49 3.02
1228 1264 4.504858 ACTTATTTCTTGCCGTGAGTAGG 58.495 43.478 0.00 0.00 0.00 3.18
1249 1285 3.964909 ACGAATTCTTGAACAAGGCAAC 58.035 40.909 13.46 4.48 38.88 4.17
1295 1374 4.751600 TCGGCTATTCGATAACTCTACGAA 59.248 41.667 0.00 0.00 46.83 3.85
1342 1421 8.682710 TGGTTGTTGAATAGGTGATTAATAAGC 58.317 33.333 0.00 0.00 0.00 3.09
1345 1424 7.558444 GGGTGGTTGTTGAATAGGTGATTAATA 59.442 37.037 0.00 0.00 0.00 0.98
1351 1430 2.551287 CGGGTGGTTGTTGAATAGGTGA 60.551 50.000 0.00 0.00 0.00 4.02
1352 1431 1.810151 CGGGTGGTTGTTGAATAGGTG 59.190 52.381 0.00 0.00 0.00 4.00
1353 1432 1.700739 TCGGGTGGTTGTTGAATAGGT 59.299 47.619 0.00 0.00 0.00 3.08
1362 1477 0.250166 GTAGCTGTTCGGGTGGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
1365 1480 1.827399 CTGGTAGCTGTTCGGGTGGT 61.827 60.000 0.00 0.00 0.00 4.16
1369 1484 2.344025 GTTAACTGGTAGCTGTTCGGG 58.656 52.381 18.78 0.00 0.00 5.14
1374 1489 3.369157 GGGAATCGTTAACTGGTAGCTGT 60.369 47.826 3.71 0.00 0.00 4.40
1394 1509 7.280428 TGCATTGCAATTTATTATTGTTGAGGG 59.720 33.333 9.83 0.00 34.76 4.30
1530 1648 3.780173 GGCGGGCTGAGCTTCTCT 61.780 66.667 3.72 0.00 34.52 3.10
1585 1703 0.982852 TCGAGGGCATCCTTGATGGT 60.983 55.000 6.24 0.00 46.14 3.55
1619 1737 3.112075 CGGCGCATGAGACAACGT 61.112 61.111 10.83 0.00 0.00 3.99
1623 1741 1.519234 GATGTCGGCGCATGAGACA 60.519 57.895 22.50 22.50 46.99 3.41
1750 1868 2.125512 CGGGGCGAGGAACTTGAG 60.126 66.667 0.00 0.00 44.22 3.02
1771 1889 2.109126 GGTCGCTGAGGTTGGATGC 61.109 63.158 0.00 0.00 0.00 3.91
1773 1891 1.901085 GAGGTCGCTGAGGTTGGAT 59.099 57.895 0.00 0.00 0.00 3.41
1818 1936 1.906824 GACCAGGTCCTCCACGTCA 60.907 63.158 8.65 0.00 35.47 4.35
1903 2021 2.322212 CGTCGATGTCGGAGGAGAT 58.678 57.895 2.25 0.00 40.29 2.75
1980 2098 2.033448 TGCATCACCGTTGGGTCC 59.967 61.111 0.00 0.00 46.01 4.46
2016 2134 3.576550 TGTAGTACTGCTTGTCCATGTCA 59.423 43.478 12.42 0.00 0.00 3.58
2020 2138 4.617253 TGTTGTAGTACTGCTTGTCCAT 57.383 40.909 12.42 0.00 0.00 3.41
2106 2224 0.955428 CGTTGTCCACCACCATCCTG 60.955 60.000 0.00 0.00 0.00 3.86
2187 2305 2.599281 TCGCCGGTCTTGACCTCA 60.599 61.111 16.60 0.00 0.00 3.86
2229 2347 2.933495 AGTAGTAGTTGATTGCGCGA 57.067 45.000 12.10 0.00 0.00 5.87
2261 2402 4.142988 GCAAACAATGGAGATGCAACAATG 60.143 41.667 0.00 0.00 37.00 2.82
2262 2403 3.998341 GCAAACAATGGAGATGCAACAAT 59.002 39.130 0.00 0.00 37.00 2.71
2263 2404 3.069872 AGCAAACAATGGAGATGCAACAA 59.930 39.130 0.00 0.00 39.42 2.83
2266 2407 3.306225 GGAAGCAAACAATGGAGATGCAA 60.306 43.478 0.00 0.00 39.42 4.08
2287 2439 0.392193 AACTCTCGCTTGCAGGATGG 60.392 55.000 0.00 0.00 35.86 3.51
2303 2455 2.366266 TCCACACTTTACAGCGGTAACT 59.634 45.455 9.06 0.00 39.14 2.24
2304 2456 2.477754 GTCCACACTTTACAGCGGTAAC 59.522 50.000 9.06 0.00 39.14 2.50
2320 2472 5.415701 TGATGGATGCTAAAAGAAAGTCCAC 59.584 40.000 0.00 0.00 37.13 4.02
2324 2476 7.472334 ACAATGATGGATGCTAAAAGAAAGT 57.528 32.000 0.00 0.00 0.00 2.66
2368 2521 3.678072 CGTTGGCGAGAATTGAACTAAGA 59.322 43.478 0.00 0.00 41.33 2.10
2397 2550 3.608506 GCACAGTTACACATGTAGTCGAG 59.391 47.826 0.00 0.00 0.00 4.04
2401 2554 3.067106 GCAGCACAGTTACACATGTAGT 58.933 45.455 0.00 1.92 0.00 2.73
2463 2616 4.009798 TGTTCAAAACACGTTACAGCAG 57.990 40.909 0.00 0.00 36.25 4.24
2473 2626 7.297391 AGTTGCAAAATCTTTGTTCAAAACAC 58.703 30.769 0.00 0.00 41.97 3.32
2474 2627 7.432350 AGTTGCAAAATCTTTGTTCAAAACA 57.568 28.000 0.00 0.00 40.21 2.83
2475 2628 7.214263 CGAAGTTGCAAAATCTTTGTTCAAAAC 59.786 33.333 0.00 0.00 0.00 2.43
2476 2629 7.116948 TCGAAGTTGCAAAATCTTTGTTCAAAA 59.883 29.630 0.00 0.00 0.00 2.44
2477 2630 6.587990 TCGAAGTTGCAAAATCTTTGTTCAAA 59.412 30.769 0.00 0.00 0.00 2.69
2478 2631 6.096036 TCGAAGTTGCAAAATCTTTGTTCAA 58.904 32.000 0.00 0.00 0.00 2.69
2479 2632 5.645624 TCGAAGTTGCAAAATCTTTGTTCA 58.354 33.333 0.00 0.00 0.00 3.18
2480 2633 6.034470 TGTTCGAAGTTGCAAAATCTTTGTTC 59.966 34.615 0.00 3.88 0.00 3.18
2481 2634 5.866633 TGTTCGAAGTTGCAAAATCTTTGTT 59.133 32.000 0.00 0.00 0.00 2.83
2482 2635 5.406649 TGTTCGAAGTTGCAAAATCTTTGT 58.593 33.333 0.00 0.00 0.00 2.83
2483 2636 5.947503 TGTTCGAAGTTGCAAAATCTTTG 57.052 34.783 0.00 4.93 0.00 2.77
2484 2637 6.198966 GTCATGTTCGAAGTTGCAAAATCTTT 59.801 34.615 0.00 0.00 0.00 2.52
2485 2638 5.687285 GTCATGTTCGAAGTTGCAAAATCTT 59.313 36.000 0.00 0.00 0.00 2.40
2486 2639 5.215160 GTCATGTTCGAAGTTGCAAAATCT 58.785 37.500 0.00 0.00 0.00 2.40
2487 2640 4.975502 TGTCATGTTCGAAGTTGCAAAATC 59.024 37.500 0.00 1.23 0.00 2.17
2496 2664 3.997021 GGTTGAGATGTCATGTTCGAAGT 59.003 43.478 0.00 0.00 30.85 3.01
2522 2690 2.165319 ACGACCAACTTTCCAGTAGC 57.835 50.000 0.00 0.00 30.68 3.58
2645 2822 7.961325 ATTTTGTTTGCCGAGTTCATTTTAT 57.039 28.000 0.00 0.00 0.00 1.40
2650 2827 6.512297 AGTTTATTTTGTTTGCCGAGTTCAT 58.488 32.000 0.00 0.00 0.00 2.57
2651 2828 5.897050 AGTTTATTTTGTTTGCCGAGTTCA 58.103 33.333 0.00 0.00 0.00 3.18
2698 2875 1.699656 CGGTCTGCCAATGCGAGAAG 61.700 60.000 0.00 0.00 41.78 2.85
2703 2880 1.421410 GAGTACGGTCTGCCAATGCG 61.421 60.000 0.00 0.00 41.78 4.73
2714 2891 3.054878 CGTAAACTTTGCTGAGTACGGT 58.945 45.455 7.18 0.00 31.38 4.83
2758 2935 3.832490 AGTCTGCCATAACAGAGTACACA 59.168 43.478 0.10 0.00 47.00 3.72
2759 2936 4.082190 TCAGTCTGCCATAACAGAGTACAC 60.082 45.833 1.77 0.00 46.31 2.90
2764 2941 3.883830 ACTCAGTCTGCCATAACAGAG 57.116 47.619 0.00 0.00 47.00 3.35
2767 2946 2.813754 GCAAACTCAGTCTGCCATAACA 59.186 45.455 0.00 0.00 0.00 2.41
2801 2980 6.774717 CGAAAATTATGCCAAGTTTCGTAG 57.225 37.500 23.80 7.31 46.16 3.51
2806 2985 7.598278 TGTATGACGAAAATTATGCCAAGTTT 58.402 30.769 0.00 0.00 0.00 2.66
2830 3009 9.492973 ACATTGTGGAAAGAAAAAGGATAAATG 57.507 29.630 0.00 0.00 0.00 2.32
2833 3012 9.581289 TCTACATTGTGGAAAGAAAAAGGATAA 57.419 29.630 0.00 0.00 0.00 1.75
2848 3027 2.351350 GGCAAAACCGTCTACATTGTGG 60.351 50.000 0.00 0.00 0.00 4.17
2880 3059 2.203422 TTTCACGGGTGCCTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
2881 3060 1.228124 TCTTTCACGGGTGCCTTGG 60.228 57.895 0.00 0.00 0.00 3.61
2882 3061 0.535102 ACTCTTTCACGGGTGCCTTG 60.535 55.000 0.00 0.00 0.00 3.61
2883 3062 0.182775 AACTCTTTCACGGGTGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
2884 3063 0.250338 GAACTCTTTCACGGGTGCCT 60.250 55.000 0.00 0.00 0.00 4.75
2885 3064 1.235281 GGAACTCTTTCACGGGTGCC 61.235 60.000 0.00 0.00 32.80 5.01
2886 3065 0.250338 AGGAACTCTTTCACGGGTGC 60.250 55.000 0.00 0.00 32.80 5.01
2887 3066 2.256117 AAGGAACTCTTTCACGGGTG 57.744 50.000 0.00 0.00 38.49 4.61
2888 3067 5.952347 ATATAAGGAACTCTTTCACGGGT 57.048 39.130 0.00 0.00 38.49 5.28
2889 3068 6.812998 TGTATATAAGGAACTCTTTCACGGG 58.187 40.000 0.00 0.00 38.49 5.28
2890 3069 6.924060 CCTGTATATAAGGAACTCTTTCACGG 59.076 42.308 5.49 0.00 38.49 4.94
2891 3070 7.490000 ACCTGTATATAAGGAACTCTTTCACG 58.510 38.462 14.32 0.00 38.49 4.35
2892 3071 9.747293 GTACCTGTATATAAGGAACTCTTTCAC 57.253 37.037 14.32 0.00 38.49 3.18
2893 3072 9.483489 TGTACCTGTATATAAGGAACTCTTTCA 57.517 33.333 14.32 0.00 38.49 2.69
2897 3076 8.702819 GGTTTGTACCTGTATATAAGGAACTCT 58.297 37.037 14.32 0.10 38.80 3.24
2898 3077 7.650903 CGGTTTGTACCTGTATATAAGGAACTC 59.349 40.741 14.32 5.80 42.66 3.01
2899 3078 7.495055 CGGTTTGTACCTGTATATAAGGAACT 58.505 38.462 14.32 0.62 42.66 3.01
2900 3079 6.201615 GCGGTTTGTACCTGTATATAAGGAAC 59.798 42.308 14.32 9.49 42.66 3.62
2901 3080 6.282930 GCGGTTTGTACCTGTATATAAGGAA 58.717 40.000 14.32 1.24 42.66 3.36
2902 3081 5.507817 CGCGGTTTGTACCTGTATATAAGGA 60.508 44.000 14.32 1.22 42.66 3.36
2903 3082 4.682860 CGCGGTTTGTACCTGTATATAAGG 59.317 45.833 0.00 8.56 42.66 2.69
2904 3083 4.682860 CCGCGGTTTGTACCTGTATATAAG 59.317 45.833 19.50 0.00 42.66 1.73
2905 3084 4.619973 CCGCGGTTTGTACCTGTATATAA 58.380 43.478 19.50 0.00 42.66 0.98
2906 3085 3.552684 GCCGCGGTTTGTACCTGTATATA 60.553 47.826 28.70 0.00 42.66 0.86
2907 3086 2.804212 GCCGCGGTTTGTACCTGTATAT 60.804 50.000 28.70 0.00 42.66 0.86
2908 3087 1.471327 GCCGCGGTTTGTACCTGTATA 60.471 52.381 28.70 0.00 42.66 1.47
2909 3088 0.741927 GCCGCGGTTTGTACCTGTAT 60.742 55.000 28.70 0.00 42.66 2.29
2910 3089 1.374505 GCCGCGGTTTGTACCTGTA 60.375 57.895 28.70 0.00 42.66 2.74
2911 3090 2.667199 GCCGCGGTTTGTACCTGT 60.667 61.111 28.70 0.00 42.66 4.00
2912 3091 0.671163 TAAGCCGCGGTTTGTACCTG 60.671 55.000 33.91 2.16 42.66 4.00
2913 3092 0.251073 ATAAGCCGCGGTTTGTACCT 59.749 50.000 33.91 15.19 42.66 3.08
2914 3093 0.654160 GATAAGCCGCGGTTTGTACC 59.346 55.000 33.91 14.96 41.33 3.34
2915 3094 1.648504 AGATAAGCCGCGGTTTGTAC 58.351 50.000 33.91 23.40 0.00 2.90
2916 3095 3.523606 TTAGATAAGCCGCGGTTTGTA 57.476 42.857 33.91 18.03 0.00 2.41
2917 3096 2.389962 TTAGATAAGCCGCGGTTTGT 57.610 45.000 33.91 28.74 0.00 2.83
2918 3097 3.963383 AATTAGATAAGCCGCGGTTTG 57.037 42.857 33.91 6.61 0.00 2.93
2919 3098 3.942748 TGAAATTAGATAAGCCGCGGTTT 59.057 39.130 30.10 30.10 0.00 3.27
2920 3099 3.537580 TGAAATTAGATAAGCCGCGGTT 58.462 40.909 28.70 20.13 0.00 4.44
2921 3100 3.188159 TGAAATTAGATAAGCCGCGGT 57.812 42.857 28.70 10.76 0.00 5.68
2922 3101 4.545823 TTTGAAATTAGATAAGCCGCGG 57.454 40.909 24.05 24.05 0.00 6.46
2923 3102 5.510671 ACATTTGAAATTAGATAAGCCGCG 58.489 37.500 0.00 0.00 0.00 6.46
2924 3103 7.702348 AGAAACATTTGAAATTAGATAAGCCGC 59.298 33.333 0.00 0.00 0.00 6.53
2925 3104 9.573133 AAGAAACATTTGAAATTAGATAAGCCG 57.427 29.630 0.00 0.00 0.00 5.52
2942 3121 9.277783 GGCAGATCAGTATGTATAAGAAACATT 57.722 33.333 0.00 0.00 38.49 2.71
2943 3122 8.432013 TGGCAGATCAGTATGTATAAGAAACAT 58.568 33.333 0.00 0.00 40.57 2.71
2944 3123 7.710907 GTGGCAGATCAGTATGTATAAGAAACA 59.289 37.037 0.00 0.00 37.40 2.83
2945 3124 7.171678 GGTGGCAGATCAGTATGTATAAGAAAC 59.828 40.741 0.00 0.00 37.40 2.78
2946 3125 7.217200 GGTGGCAGATCAGTATGTATAAGAAA 58.783 38.462 0.00 0.00 37.40 2.52
2947 3126 6.516693 CGGTGGCAGATCAGTATGTATAAGAA 60.517 42.308 0.00 0.00 37.40 2.52
2948 3127 5.048013 CGGTGGCAGATCAGTATGTATAAGA 60.048 44.000 0.00 0.00 37.40 2.10
2949 3128 5.048013 TCGGTGGCAGATCAGTATGTATAAG 60.048 44.000 0.00 0.00 37.40 1.73
2950 3129 4.830600 TCGGTGGCAGATCAGTATGTATAA 59.169 41.667 0.00 0.00 37.40 0.98
2951 3130 4.217767 GTCGGTGGCAGATCAGTATGTATA 59.782 45.833 0.00 0.00 37.40 1.47
2952 3131 3.005897 GTCGGTGGCAGATCAGTATGTAT 59.994 47.826 0.00 0.00 37.40 2.29
2953 3132 2.361119 GTCGGTGGCAGATCAGTATGTA 59.639 50.000 0.00 0.00 37.40 2.29
2954 3133 1.137086 GTCGGTGGCAGATCAGTATGT 59.863 52.381 0.00 0.00 37.40 2.29
2955 3134 1.410517 AGTCGGTGGCAGATCAGTATG 59.589 52.381 0.00 0.00 37.54 2.39
2956 3135 1.683917 GAGTCGGTGGCAGATCAGTAT 59.316 52.381 0.00 0.00 0.00 2.12
2957 3136 1.103803 GAGTCGGTGGCAGATCAGTA 58.896 55.000 0.00 0.00 0.00 2.74
2958 3137 1.608717 GGAGTCGGTGGCAGATCAGT 61.609 60.000 0.00 0.00 0.00 3.41
2959 3138 1.142748 GGAGTCGGTGGCAGATCAG 59.857 63.158 0.00 0.00 0.00 2.90
2960 3139 1.305297 AGGAGTCGGTGGCAGATCA 60.305 57.895 0.00 0.00 0.00 2.92
2961 3140 1.439644 GAGGAGTCGGTGGCAGATC 59.560 63.158 0.00 0.00 0.00 2.75
2962 3141 2.060980 GGAGGAGTCGGTGGCAGAT 61.061 63.158 0.00 0.00 0.00 2.90
2963 3142 2.680352 GGAGGAGTCGGTGGCAGA 60.680 66.667 0.00 0.00 0.00 4.26
2964 3143 2.681778 AGGAGGAGTCGGTGGCAG 60.682 66.667 0.00 0.00 0.00 4.85
2965 3144 2.680352 GAGGAGGAGTCGGTGGCA 60.680 66.667 0.00 0.00 0.00 4.92
2966 3145 3.462678 GGAGGAGGAGTCGGTGGC 61.463 72.222 0.00 0.00 0.00 5.01
2967 3146 2.760385 GGGAGGAGGAGTCGGTGG 60.760 72.222 0.00 0.00 0.00 4.61
2968 3147 2.760385 GGGGAGGAGGAGTCGGTG 60.760 72.222 0.00 0.00 0.00 4.94
2969 3148 2.591193 GATGGGGAGGAGGAGTCGGT 62.591 65.000 0.00 0.00 0.00 4.69
2970 3149 1.834822 GATGGGGAGGAGGAGTCGG 60.835 68.421 0.00 0.00 0.00 4.79
2971 3150 2.196925 CGATGGGGAGGAGGAGTCG 61.197 68.421 0.00 0.00 0.00 4.18
2972 3151 2.503382 GCGATGGGGAGGAGGAGTC 61.503 68.421 0.00 0.00 0.00 3.36
2973 3152 2.444895 GCGATGGGGAGGAGGAGT 60.445 66.667 0.00 0.00 0.00 3.85
2974 3153 2.123077 AGCGATGGGGAGGAGGAG 60.123 66.667 0.00 0.00 0.00 3.69
2975 3154 2.444706 CAGCGATGGGGAGGAGGA 60.445 66.667 0.00 0.00 0.00 3.71
2976 3155 4.247380 GCAGCGATGGGGAGGAGG 62.247 72.222 1.46 0.00 0.00 4.30
2977 3156 4.247380 GGCAGCGATGGGGAGGAG 62.247 72.222 1.46 0.00 0.00 3.69
2993 3172 4.579384 AAGGTGTGGGTGGCACGG 62.579 66.667 12.17 0.00 37.70 4.94
2994 3173 2.978010 GAAGGTGTGGGTGGCACG 60.978 66.667 12.17 0.00 37.70 5.34
2995 3174 1.600916 GAGAAGGTGTGGGTGGCAC 60.601 63.158 9.70 9.70 36.22 5.01
2996 3175 2.836154 GAGAAGGTGTGGGTGGCA 59.164 61.111 0.00 0.00 0.00 4.92
2997 3176 2.358737 CGAGAAGGTGTGGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
2998 3177 2.358737 GCGAGAAGGTGTGGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
2999 3178 1.961277 GTGCGAGAAGGTGTGGGTG 60.961 63.158 0.00 0.00 0.00 4.61
3000 3179 2.426023 GTGCGAGAAGGTGTGGGT 59.574 61.111 0.00 0.00 0.00 4.51
3001 3180 1.961277 GTGTGCGAGAAGGTGTGGG 60.961 63.158 0.00 0.00 0.00 4.61
3002 3181 1.961277 GGTGTGCGAGAAGGTGTGG 60.961 63.158 0.00 0.00 0.00 4.17
3003 3182 1.961277 GGGTGTGCGAGAAGGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
3004 3183 2.426023 GGGTGTGCGAGAAGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
3005 3184 2.738521 CGGGTGTGCGAGAAGGTG 60.739 66.667 0.00 0.00 0.00 4.00
3006 3185 3.222354 GACGGGTGTGCGAGAAGGT 62.222 63.158 0.00 0.00 0.00 3.50
3007 3186 2.432628 GACGGGTGTGCGAGAAGG 60.433 66.667 0.00 0.00 0.00 3.46
3008 3187 2.805353 CGACGGGTGTGCGAGAAG 60.805 66.667 0.00 0.00 0.00 2.85
3014 3193 3.112709 GAGAAGCGACGGGTGTGC 61.113 66.667 0.00 0.00 0.00 4.57
3015 3194 2.432628 GGAGAAGCGACGGGTGTG 60.433 66.667 0.00 0.00 0.00 3.82
3016 3195 2.600769 AGGAGAAGCGACGGGTGT 60.601 61.111 0.00 0.00 0.00 4.16
3017 3196 2.182030 GAGGAGAAGCGACGGGTG 59.818 66.667 0.00 0.00 0.00 4.61
3018 3197 3.069318 GGAGGAGAAGCGACGGGT 61.069 66.667 0.00 0.00 0.00 5.28
3019 3198 4.194720 CGGAGGAGAAGCGACGGG 62.195 72.222 0.00 0.00 0.00 5.28
3038 3217 4.154347 GAGCAGCAGGGGAGACGG 62.154 72.222 0.00 0.00 0.00 4.79
3039 3218 4.154347 GGAGCAGCAGGGGAGACG 62.154 72.222 0.00 0.00 0.00 4.18
3040 3219 2.686835 AGGAGCAGCAGGGGAGAC 60.687 66.667 0.00 0.00 0.00 3.36
3041 3220 2.364842 GAGGAGCAGCAGGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
3042 3221 2.365370 AGAGGAGCAGCAGGGGAG 60.365 66.667 0.00 0.00 0.00 4.30
3043 3222 2.364842 GAGAGGAGCAGCAGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
3044 3223 3.478274 GGAGAGGAGCAGCAGGGG 61.478 72.222 0.00 0.00 0.00 4.79
3045 3224 3.847602 CGGAGAGGAGCAGCAGGG 61.848 72.222 0.00 0.00 0.00 4.45
3046 3225 3.073735 ACGGAGAGGAGCAGCAGG 61.074 66.667 0.00 0.00 0.00 4.85
3047 3226 2.493973 GACGGAGAGGAGCAGCAG 59.506 66.667 0.00 0.00 0.00 4.24
3048 3227 3.443925 CGACGGAGAGGAGCAGCA 61.444 66.667 0.00 0.00 0.00 4.41
3049 3228 4.200283 CCGACGGAGAGGAGCAGC 62.200 72.222 8.64 0.00 0.00 5.25
3050 3229 2.752238 ACCGACGGAGAGGAGCAG 60.752 66.667 23.38 0.00 33.69 4.24
3051 3230 3.062466 CACCGACGGAGAGGAGCA 61.062 66.667 23.38 0.00 33.69 4.26
3052 3231 4.500116 GCACCGACGGAGAGGAGC 62.500 72.222 23.38 10.31 37.97 4.70
3053 3232 1.440938 CTAGCACCGACGGAGAGGAG 61.441 65.000 23.38 7.01 33.69 3.69
3054 3233 1.451567 CTAGCACCGACGGAGAGGA 60.452 63.158 23.38 0.35 33.69 3.71
3055 3234 3.111939 CTAGCACCGACGGAGAGG 58.888 66.667 23.38 8.03 35.33 3.69
3056 3235 2.054140 GAGCTAGCACCGACGGAGAG 62.054 65.000 23.38 12.25 0.00 3.20
3057 3236 2.045242 AGCTAGCACCGACGGAGA 60.045 61.111 23.38 1.11 0.00 3.71
3058 3237 2.409651 GAGCTAGCACCGACGGAG 59.590 66.667 23.38 14.88 0.00 4.63
3059 3238 3.138798 GGAGCTAGCACCGACGGA 61.139 66.667 23.38 0.00 0.00 4.69
3060 3239 3.127352 GAGGAGCTAGCACCGACGG 62.127 68.421 23.25 13.61 0.00 4.79
3061 3240 2.409651 GAGGAGCTAGCACCGACG 59.590 66.667 23.25 0.00 0.00 5.12
3062 3241 2.787567 GGGAGGAGCTAGCACCGAC 61.788 68.421 23.25 20.06 0.00 4.79
3063 3242 2.442272 GGGAGGAGCTAGCACCGA 60.442 66.667 23.25 0.00 0.00 4.69
3064 3243 3.541713 GGGGAGGAGCTAGCACCG 61.542 72.222 23.25 0.00 0.00 4.94
3065 3244 1.690985 AAGGGGAGGAGCTAGCACC 60.691 63.158 22.31 22.31 0.00 5.01
3066 3245 1.691195 GGAAGGGGAGGAGCTAGCAC 61.691 65.000 18.83 11.05 0.00 4.40
3067 3246 1.383248 GGAAGGGGAGGAGCTAGCA 60.383 63.158 18.83 0.00 0.00 3.49
3068 3247 2.503382 CGGAAGGGGAGGAGCTAGC 61.503 68.421 6.62 6.62 0.00 3.42
3069 3248 3.863606 CGGAAGGGGAGGAGCTAG 58.136 66.667 0.00 0.00 0.00 3.42
3089 3268 2.669569 TTTCAGCCAGAGTGCGCC 60.670 61.111 4.18 0.00 36.02 6.53
3090 3269 2.558313 GTTTCAGCCAGAGTGCGC 59.442 61.111 0.00 0.00 36.02 6.09
3091 3270 2.671177 CGGTTTCAGCCAGAGTGCG 61.671 63.158 0.00 0.00 36.02 5.34
3092 3271 2.970974 GCGGTTTCAGCCAGAGTGC 61.971 63.158 0.00 0.00 0.00 4.40
3093 3272 2.671177 CGCGGTTTCAGCCAGAGTG 61.671 63.158 0.00 0.00 0.00 3.51
3094 3273 2.357517 CGCGGTTTCAGCCAGAGT 60.358 61.111 0.00 0.00 0.00 3.24
3095 3274 2.357517 ACGCGGTTTCAGCCAGAG 60.358 61.111 12.47 0.00 0.00 3.35
3096 3275 2.664851 CACGCGGTTTCAGCCAGA 60.665 61.111 12.47 0.00 0.00 3.86
3097 3276 4.389576 GCACGCGGTTTCAGCCAG 62.390 66.667 12.47 0.00 0.00 4.85
3099 3278 4.683334 GTGCACGCGGTTTCAGCC 62.683 66.667 12.47 0.00 0.00 4.85
3100 3279 2.731587 AATGTGCACGCGGTTTCAGC 62.732 55.000 12.47 4.99 0.00 4.26
3101 3280 0.725784 GAATGTGCACGCGGTTTCAG 60.726 55.000 12.47 0.00 0.00 3.02
3102 3281 1.163420 AGAATGTGCACGCGGTTTCA 61.163 50.000 12.47 4.83 0.00 2.69
3103 3282 0.793861 TAGAATGTGCACGCGGTTTC 59.206 50.000 12.47 9.76 0.00 2.78
3104 3283 0.796312 CTAGAATGTGCACGCGGTTT 59.204 50.000 12.47 0.42 0.00 3.27
3105 3284 0.037697 TCTAGAATGTGCACGCGGTT 60.038 50.000 12.47 4.33 0.00 4.44
3106 3285 0.736325 GTCTAGAATGTGCACGCGGT 60.736 55.000 12.47 0.00 0.00 5.68
3107 3286 1.742900 CGTCTAGAATGTGCACGCGG 61.743 60.000 12.47 0.00 0.00 6.46
3108 3287 0.796870 TCGTCTAGAATGTGCACGCG 60.797 55.000 13.13 3.53 0.00 6.01
3109 3288 0.640768 GTCGTCTAGAATGTGCACGC 59.359 55.000 13.13 4.13 0.00 5.34
3110 3289 2.264109 AGTCGTCTAGAATGTGCACG 57.736 50.000 13.13 0.00 0.00 5.34
3111 3290 3.368236 GGAAAGTCGTCTAGAATGTGCAC 59.632 47.826 10.75 10.75 0.00 4.57
3112 3291 3.258372 AGGAAAGTCGTCTAGAATGTGCA 59.742 43.478 0.00 0.00 0.00 4.57
3113 3292 3.851098 AGGAAAGTCGTCTAGAATGTGC 58.149 45.455 0.00 0.00 0.00 4.57
3114 3293 4.082190 TGGAGGAAAGTCGTCTAGAATGTG 60.082 45.833 0.00 0.00 32.33 3.21
3115 3294 4.087182 TGGAGGAAAGTCGTCTAGAATGT 58.913 43.478 0.00 0.00 32.33 2.71
3116 3295 4.720649 TGGAGGAAAGTCGTCTAGAATG 57.279 45.455 0.00 0.00 32.33 2.67
3117 3296 8.707796 TTATATGGAGGAAAGTCGTCTAGAAT 57.292 34.615 0.00 0.00 32.33 2.40
3118 3297 7.997223 TCTTATATGGAGGAAAGTCGTCTAGAA 59.003 37.037 0.00 0.00 32.33 2.10
3119 3298 7.444792 GTCTTATATGGAGGAAAGTCGTCTAGA 59.555 40.741 0.00 0.00 32.33 2.43
3120 3299 7.446013 AGTCTTATATGGAGGAAAGTCGTCTAG 59.554 40.741 0.00 0.00 32.33 2.43
3121 3300 7.288560 AGTCTTATATGGAGGAAAGTCGTCTA 58.711 38.462 0.00 0.00 32.33 2.59
3122 3301 6.130569 AGTCTTATATGGAGGAAAGTCGTCT 58.869 40.000 0.00 0.00 32.33 4.18
3123 3302 6.263617 AGAGTCTTATATGGAGGAAAGTCGTC 59.736 42.308 0.00 0.00 0.00 4.20
3124 3303 6.130569 AGAGTCTTATATGGAGGAAAGTCGT 58.869 40.000 0.00 0.00 0.00 4.34
3125 3304 6.642707 AGAGTCTTATATGGAGGAAAGTCG 57.357 41.667 0.00 0.00 0.00 4.18
3126 3305 7.289084 AGGAAGAGTCTTATATGGAGGAAAGTC 59.711 40.741 5.09 0.00 0.00 3.01
3127 3306 7.136203 AGGAAGAGTCTTATATGGAGGAAAGT 58.864 38.462 5.09 0.00 0.00 2.66
3128 3307 7.610580 AGGAAGAGTCTTATATGGAGGAAAG 57.389 40.000 5.09 0.00 0.00 2.62
3129 3308 9.676129 AATAGGAAGAGTCTTATATGGAGGAAA 57.324 33.333 5.09 0.00 0.00 3.13
3130 3309 9.676129 AAATAGGAAGAGTCTTATATGGAGGAA 57.324 33.333 5.09 0.00 0.00 3.36
3131 3310 9.094578 CAAATAGGAAGAGTCTTATATGGAGGA 57.905 37.037 5.09 0.00 0.00 3.71
3132 3311 9.094578 TCAAATAGGAAGAGTCTTATATGGAGG 57.905 37.037 5.09 0.32 0.00 4.30
3160 3339 9.836076 GGTTTGAGCTATAAGACGTTTTAAATT 57.164 29.630 2.33 0.00 0.00 1.82
3161 3340 8.173130 CGGTTTGAGCTATAAGACGTTTTAAAT 58.827 33.333 2.33 0.00 0.00 1.40
3162 3341 7.171337 ACGGTTTGAGCTATAAGACGTTTTAAA 59.829 33.333 2.33 0.00 0.00 1.52
3163 3342 6.646240 ACGGTTTGAGCTATAAGACGTTTTAA 59.354 34.615 2.33 0.00 0.00 1.52
3164 3343 6.158598 ACGGTTTGAGCTATAAGACGTTTTA 58.841 36.000 0.52 0.52 0.00 1.52
3165 3344 4.992951 ACGGTTTGAGCTATAAGACGTTTT 59.007 37.500 0.00 0.00 0.00 2.43
3166 3345 4.563061 ACGGTTTGAGCTATAAGACGTTT 58.437 39.130 0.00 0.00 0.00 3.60
3167 3346 4.184079 ACGGTTTGAGCTATAAGACGTT 57.816 40.909 0.00 0.00 0.00 3.99
3168 3347 3.863142 ACGGTTTGAGCTATAAGACGT 57.137 42.857 0.00 0.00 0.00 4.34
3169 3348 3.306166 CCAACGGTTTGAGCTATAAGACG 59.694 47.826 0.00 0.00 34.24 4.18
3170 3349 4.251268 ACCAACGGTTTGAGCTATAAGAC 58.749 43.478 0.00 0.00 34.24 3.01
3171 3350 4.222145 AGACCAACGGTTTGAGCTATAAGA 59.778 41.667 0.00 0.00 35.25 2.10
3172 3351 4.330074 CAGACCAACGGTTTGAGCTATAAG 59.670 45.833 0.00 0.00 39.77 1.73
3173 3352 4.020928 TCAGACCAACGGTTTGAGCTATAA 60.021 41.667 2.44 0.00 41.02 0.98
3174 3353 3.512329 TCAGACCAACGGTTTGAGCTATA 59.488 43.478 2.44 0.00 41.02 1.31
3175 3354 2.301870 TCAGACCAACGGTTTGAGCTAT 59.698 45.455 2.44 0.00 41.02 2.97
3176 3355 1.689813 TCAGACCAACGGTTTGAGCTA 59.310 47.619 2.44 0.00 41.02 3.32
3177 3356 0.468226 TCAGACCAACGGTTTGAGCT 59.532 50.000 2.44 0.00 41.02 4.09
3178 3357 3.000815 TCAGACCAACGGTTTGAGC 57.999 52.632 2.44 0.00 41.02 4.26
3181 3360 7.707774 AATTTTAAATCAGACCAACGGTTTG 57.292 32.000 0.00 0.00 38.89 2.93
3182 3361 7.766738 ACAAATTTTAAATCAGACCAACGGTTT 59.233 29.630 0.00 0.00 35.25 3.27
3183 3362 7.269316 ACAAATTTTAAATCAGACCAACGGTT 58.731 30.769 0.00 0.00 35.25 4.44
3184 3363 6.811954 ACAAATTTTAAATCAGACCAACGGT 58.188 32.000 0.00 0.00 39.44 4.83
3185 3364 7.707774 AACAAATTTTAAATCAGACCAACGG 57.292 32.000 0.00 0.00 0.00 4.44
3186 3365 9.631639 GAAAACAAATTTTAAATCAGACCAACG 57.368 29.630 0.00 0.00 38.17 4.10
3189 3368 9.103861 GGTGAAAACAAATTTTAAATCAGACCA 57.896 29.630 0.00 0.00 38.17 4.02
3190 3369 9.103861 TGGTGAAAACAAATTTTAAATCAGACC 57.896 29.630 0.00 0.00 38.17 3.85
3214 3393 1.418342 CGTCGCAACGGACCTAATGG 61.418 60.000 0.00 0.00 45.21 3.16
3215 3394 1.995991 CGTCGCAACGGACCTAATG 59.004 57.895 0.00 0.00 45.21 1.90
3216 3395 4.489249 CGTCGCAACGGACCTAAT 57.511 55.556 0.00 0.00 45.21 1.73
3225 3404 3.027029 GTTTTGAAAGTCTCGTCGCAAC 58.973 45.455 0.00 0.00 0.00 4.17
3226 3405 2.933906 AGTTTTGAAAGTCTCGTCGCAA 59.066 40.909 0.00 0.00 0.00 4.85
3227 3406 2.546778 AGTTTTGAAAGTCTCGTCGCA 58.453 42.857 0.00 0.00 0.00 5.10
3228 3407 3.532950 GAAGTTTTGAAAGTCTCGTCGC 58.467 45.455 0.00 0.00 0.00 5.19
3229 3408 4.116713 GGAAGTTTTGAAAGTCTCGTCG 57.883 45.455 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.