Multiple sequence alignment - TraesCS4A01G394600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G394600 chr4A 100.000 4972 0 0 1 4972 669819474 669824445 0.000000e+00 9182.0
1 TraesCS4A01G394600 chr4A 94.166 1594 89 4 3383 4972 712905475 712907068 0.000000e+00 2425.0
2 TraesCS4A01G394600 chr4A 80.510 549 69 21 2789 3318 669836235 669836764 2.170000e-103 387.0
3 TraesCS4A01G394600 chr4A 92.308 208 13 3 240 445 669798378 669798584 4.870000e-75 292.0
4 TraesCS4A01G394600 chr4A 80.606 165 25 6 335 495 704277316 704277477 2.430000e-23 121.0
5 TraesCS4A01G394600 chr1A 95.539 1569 63 6 3407 4972 477354100 477352536 0.000000e+00 2503.0
6 TraesCS4A01G394600 chr1A 95.344 1568 68 3 3407 4972 100092780 100091216 0.000000e+00 2486.0
7 TraesCS4A01G394600 chr1A 95.344 1568 68 3 3407 4972 584891297 584892861 0.000000e+00 2486.0
8 TraesCS4A01G394600 chr1A 82.589 224 27 6 765 978 451620735 451620956 2.360000e-43 187.0
9 TraesCS4A01G394600 chr1A 88.281 128 13 2 2280 2406 510996635 510996761 8.620000e-33 152.0
10 TraesCS4A01G394600 chr1A 93.023 43 2 1 219 261 61092804 61092763 1.490000e-05 62.1
11 TraesCS4A01G394600 chr6A 95.356 1572 67 4 3404 4972 458710330 458708762 0.000000e+00 2494.0
12 TraesCS4A01G394600 chr5A 95.408 1568 67 4 3407 4972 611017731 611019295 0.000000e+00 2492.0
13 TraesCS4A01G394600 chr5A 79.018 224 33 12 264 482 382337320 382337534 1.870000e-29 141.0
14 TraesCS4A01G394600 chr3B 95.281 1568 69 3 3407 4972 22390308 22388744 0.000000e+00 2481.0
15 TraesCS4A01G394600 chr3B 94.253 1566 87 3 3409 4972 753526209 753524645 0.000000e+00 2390.0
16 TraesCS4A01G394600 chr3B 94.311 334 14 4 2279 2607 11288942 11288609 1.600000e-139 507.0
17 TraesCS4A01G394600 chr3B 93.694 333 16 3 2280 2607 11266338 11266006 1.240000e-135 494.0
18 TraesCS4A01G394600 chr3B 93.694 333 16 4 2280 2607 11271248 11270916 1.240000e-135 494.0
19 TraesCS4A01G394600 chr3B 96.277 188 2 2 2552 2734 775998437 775998250 2.250000e-78 303.0
20 TraesCS4A01G394600 chr3B 91.975 162 11 2 2572 2731 5314038 5314199 5.010000e-55 226.0
21 TraesCS4A01G394600 chr3B 91.358 162 12 2 2572 2731 3414047 3413886 2.330000e-53 220.0
22 TraesCS4A01G394600 chr3B 81.081 148 23 4 4 151 827853695 827853553 4.070000e-21 113.0
23 TraesCS4A01G394600 chr7A 94.837 1569 75 4 3407 4972 24834304 24832739 0.000000e+00 2444.0
24 TraesCS4A01G394600 chr7A 91.643 1077 77 6 1206 2280 57744883 57745948 0.000000e+00 1478.0
25 TraesCS4A01G394600 chr7A 85.842 1010 87 28 240 1203 57743742 57744741 0.000000e+00 1022.0
26 TraesCS4A01G394600 chr7A 91.077 594 41 9 2735 3319 57745943 57746533 0.000000e+00 793.0
27 TraesCS4A01G394600 chr7A 78.222 225 41 7 268 486 310222987 310222765 2.410000e-28 137.0
28 TraesCS4A01G394600 chr7A 88.889 45 3 2 213 256 483811411 483811368 3.000000e-03 54.7
29 TraesCS4A01G394600 chr7D 93.209 1075 59 2 1206 2280 54234463 54235523 0.000000e+00 1568.0
30 TraesCS4A01G394600 chr7D 89.671 1094 59 22 240 1288 54233328 54234412 0.000000e+00 1345.0
31 TraesCS4A01G394600 chr7D 92.966 654 38 3 2735 3381 54235518 54236170 0.000000e+00 946.0
32 TraesCS4A01G394600 chr7D 83.540 808 121 8 1446 2249 54585219 54584420 0.000000e+00 745.0
33 TraesCS4A01G394600 chr7D 82.437 837 119 16 1455 2280 54258289 54259108 0.000000e+00 706.0
34 TraesCS4A01G394600 chr7D 86.538 468 57 3 2856 3320 54576471 54576007 1.230000e-140 510.0
35 TraesCS4A01G394600 chr7D 81.903 536 67 24 2789 3303 54259169 54259695 4.600000e-115 425.0
36 TraesCS4A01G394600 chr7D 81.818 165 22 8 335 495 27546357 27546517 1.120000e-26 132.0
37 TraesCS4A01G394600 chr7D 77.876 226 39 10 268 486 276512777 276512556 4.040000e-26 130.0
38 TraesCS4A01G394600 chr7D 81.250 144 25 2 264 406 43214766 43214908 1.130000e-21 115.0
39 TraesCS4A01G394600 chr7D 84.211 114 17 1 16 128 175634552 175634665 5.260000e-20 110.0
40 TraesCS4A01G394600 chr7D 92.857 56 4 0 2794 2849 54583821 54583766 1.150000e-11 82.4
41 TraesCS4A01G394600 chr7D 95.238 42 2 0 2239 2280 54583913 54583872 3.210000e-07 67.6
42 TraesCS4A01G394600 chr7B 95.168 476 19 4 2277 2751 741639025 741638553 0.000000e+00 749.0
43 TraesCS4A01G394600 chr7B 95.323 449 20 1 2280 2727 710310247 710310695 0.000000e+00 712.0
44 TraesCS4A01G394600 chr7B 77.876 226 40 9 268 486 257663878 257664100 1.120000e-26 132.0
45 TraesCS4A01G394600 chr5D 93.464 459 26 3 2280 2734 456845813 456846271 0.000000e+00 678.0
46 TraesCS4A01G394600 chr5D 93.893 262 15 1 2280 2540 456832129 456832390 1.300000e-105 394.0
47 TraesCS4A01G394600 chr5D 92.670 191 12 2 2545 2734 456833231 456833420 1.760000e-69 274.0
48 TraesCS4A01G394600 chr6B 95.294 255 7 1 1 250 521713641 521713387 2.790000e-107 399.0
49 TraesCS4A01G394600 chr6B 94.712 208 8 2 2280 2484 705581717 705581924 2.230000e-83 320.0
50 TraesCS4A01G394600 chr2B 87.018 285 22 9 2461 2733 522829454 522829173 1.740000e-79 307.0
51 TraesCS4A01G394600 chr2B 97.479 119 3 0 2616 2734 522824261 522824143 2.350000e-48 204.0
52 TraesCS4A01G394600 chr2B 94.545 55 3 0 2513 2567 655819506 655819452 8.870000e-13 86.1
53 TraesCS4A01G394600 chr2A 79.812 213 33 6 770 975 699594594 699594803 4.010000e-31 147.0
54 TraesCS4A01G394600 chr2A 86.000 100 7 6 899 996 1314173 1314079 3.170000e-17 100.0
55 TraesCS4A01G394600 chr2D 76.000 275 45 16 704 972 558971075 558971334 6.760000e-24 122.0
56 TraesCS4A01G394600 chrUn 81.081 148 23 4 1 148 325230087 325230229 4.070000e-21 113.0
57 TraesCS4A01G394600 chr4D 91.667 60 5 0 2508 2567 230979191 230979250 3.190000e-12 84.2
58 TraesCS4A01G394600 chr1D 87.719 57 5 2 223 278 483447968 483448023 1.160000e-06 65.8
59 TraesCS4A01G394600 chr5B 100.000 32 0 0 219 250 269963005 269963036 5.380000e-05 60.2
60 TraesCS4A01G394600 chr5B 89.583 48 4 1 223 269 270672509 270672556 5.380000e-05 60.2
61 TraesCS4A01G394600 chr4B 100.000 32 0 0 220 251 77003897 77003866 5.380000e-05 60.2
62 TraesCS4A01G394600 chr3D 94.872 39 1 1 223 260 604262709 604262671 5.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G394600 chr4A 669819474 669824445 4971 False 9182.000000 9182 100.000000 1 4972 1 chr4A.!!$F2 4971
1 TraesCS4A01G394600 chr4A 712905475 712907068 1593 False 2425.000000 2425 94.166000 3383 4972 1 chr4A.!!$F5 1589
2 TraesCS4A01G394600 chr4A 669836235 669836764 529 False 387.000000 387 80.510000 2789 3318 1 chr4A.!!$F3 529
3 TraesCS4A01G394600 chr1A 477352536 477354100 1564 True 2503.000000 2503 95.539000 3407 4972 1 chr1A.!!$R3 1565
4 TraesCS4A01G394600 chr1A 100091216 100092780 1564 True 2486.000000 2486 95.344000 3407 4972 1 chr1A.!!$R2 1565
5 TraesCS4A01G394600 chr1A 584891297 584892861 1564 False 2486.000000 2486 95.344000 3407 4972 1 chr1A.!!$F3 1565
6 TraesCS4A01G394600 chr6A 458708762 458710330 1568 True 2494.000000 2494 95.356000 3404 4972 1 chr6A.!!$R1 1568
7 TraesCS4A01G394600 chr5A 611017731 611019295 1564 False 2492.000000 2492 95.408000 3407 4972 1 chr5A.!!$F2 1565
8 TraesCS4A01G394600 chr3B 22388744 22390308 1564 True 2481.000000 2481 95.281000 3407 4972 1 chr3B.!!$R5 1565
9 TraesCS4A01G394600 chr3B 753524645 753526209 1564 True 2390.000000 2390 94.253000 3409 4972 1 chr3B.!!$R6 1563
10 TraesCS4A01G394600 chr7A 24832739 24834304 1565 True 2444.000000 2444 94.837000 3407 4972 1 chr7A.!!$R1 1565
11 TraesCS4A01G394600 chr7A 57743742 57746533 2791 False 1097.666667 1478 89.520667 240 3319 3 chr7A.!!$F1 3079
12 TraesCS4A01G394600 chr7D 54233328 54236170 2842 False 1286.333333 1568 91.948667 240 3381 3 chr7D.!!$F4 3141
13 TraesCS4A01G394600 chr7D 54258289 54259695 1406 False 565.500000 706 82.170000 1455 3303 2 chr7D.!!$F5 1848
14 TraesCS4A01G394600 chr7D 54583766 54585219 1453 True 298.333333 745 90.545000 1446 2849 3 chr7D.!!$R3 1403
15 TraesCS4A01G394600 chr5D 456832129 456833420 1291 False 334.000000 394 93.281500 2280 2734 2 chr5D.!!$F2 454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.023732 CGACTTTGTAGATGCGTGCG 59.976 55.0 0.00 0.0 0.00 5.34 F
1369 1570 0.036765 ACGAACCAGCGGCTCATAAA 60.037 50.0 0.00 0.0 35.12 1.40 F
1780 1990 0.178973 TCTTCGTCCAGGTGTCAGGA 60.179 55.0 0.00 0.0 0.00 3.86 F
2492 3219 0.810426 TGCGTAACTTGGCGAACACA 60.810 50.0 0.00 0.0 0.00 3.72 F
3344 4963 0.507358 CATCGCATGAGAGCATCACG 59.493 55.0 5.15 0.0 41.91 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1637 0.602905 ACGGCAGCAAGAAGTGGTAC 60.603 55.000 0.00 0.0 35.75 3.34 R
2353 3080 0.179702 TCCATCAAGCTGCTAGGCTG 59.820 55.000 0.90 0.0 42.24 4.85 R
2852 4446 0.240411 AGGAAGTACACGTCGTCAGC 59.760 55.000 0.00 0.0 0.00 4.26 R
3689 5310 1.133025 GTGGCCATTGAGTTGGATTCG 59.867 52.381 9.72 0.0 39.25 3.34 R
4175 5796 1.133945 TGGCTGTTCCAAGTGCTACAA 60.134 47.619 0.00 0.0 43.21 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.949451 AACAACGGCAATCACACAAA 57.051 40.000 0.00 0.00 0.00 2.83
20 21 2.202295 ACAACGGCAATCACACAAAC 57.798 45.000 0.00 0.00 0.00 2.93
21 22 1.119635 CAACGGCAATCACACAAACG 58.880 50.000 0.00 0.00 0.00 3.60
22 23 0.593773 AACGGCAATCACACAAACGC 60.594 50.000 0.00 0.00 0.00 4.84
23 24 1.009108 CGGCAATCACACAAACGCA 60.009 52.632 0.00 0.00 0.00 5.24
24 25 1.268113 CGGCAATCACACAAACGCAC 61.268 55.000 0.00 0.00 0.00 5.34
25 26 0.248825 GGCAATCACACAAACGCACA 60.249 50.000 0.00 0.00 0.00 4.57
26 27 0.845768 GCAATCACACAAACGCACAC 59.154 50.000 0.00 0.00 0.00 3.82
27 28 1.533756 GCAATCACACAAACGCACACT 60.534 47.619 0.00 0.00 0.00 3.55
28 29 2.286713 GCAATCACACAAACGCACACTA 60.287 45.455 0.00 0.00 0.00 2.74
29 30 3.544651 CAATCACACAAACGCACACTAG 58.455 45.455 0.00 0.00 0.00 2.57
30 31 0.934496 TCACACAAACGCACACTAGC 59.066 50.000 0.00 0.00 0.00 3.42
31 32 0.937304 CACACAAACGCACACTAGCT 59.063 50.000 0.00 0.00 0.00 3.32
32 33 2.131972 CACACAAACGCACACTAGCTA 58.868 47.619 0.00 0.00 0.00 3.32
33 34 2.155732 CACACAAACGCACACTAGCTAG 59.844 50.000 19.44 19.44 0.00 3.42
34 35 1.726791 CACAAACGCACACTAGCTAGG 59.273 52.381 24.35 15.22 0.00 3.02
35 36 1.616865 ACAAACGCACACTAGCTAGGA 59.383 47.619 24.35 0.00 0.00 2.94
36 37 2.036733 ACAAACGCACACTAGCTAGGAA 59.963 45.455 24.35 0.00 0.00 3.36
37 38 2.365408 AACGCACACTAGCTAGGAAC 57.635 50.000 24.35 9.96 0.00 3.62
38 39 1.546961 ACGCACACTAGCTAGGAACT 58.453 50.000 24.35 0.40 46.37 3.01
39 40 1.473278 ACGCACACTAGCTAGGAACTC 59.527 52.381 24.35 8.59 41.75 3.01
40 41 1.472878 CGCACACTAGCTAGGAACTCA 59.527 52.381 24.35 0.00 41.75 3.41
41 42 2.732597 CGCACACTAGCTAGGAACTCAC 60.733 54.545 24.35 6.51 41.75 3.51
42 43 2.494073 GCACACTAGCTAGGAACTCACT 59.506 50.000 24.35 0.00 41.75 3.41
43 44 3.428316 GCACACTAGCTAGGAACTCACTC 60.428 52.174 24.35 0.83 41.75 3.51
44 45 3.129638 CACACTAGCTAGGAACTCACTCC 59.870 52.174 24.35 0.00 41.75 3.85
45 46 2.691011 CACTAGCTAGGAACTCACTCCC 59.309 54.545 24.35 0.00 41.75 4.30
46 47 2.312390 CTAGCTAGGAACTCACTCCCC 58.688 57.143 13.32 0.00 41.75 4.81
47 48 0.713579 AGCTAGGAACTCACTCCCCT 59.286 55.000 0.00 0.00 41.75 4.79
48 49 0.827368 GCTAGGAACTCACTCCCCTG 59.173 60.000 0.00 0.00 41.75 4.45
49 50 1.490574 CTAGGAACTCACTCCCCTGG 58.509 60.000 0.00 0.00 41.75 4.45
50 51 1.007238 CTAGGAACTCACTCCCCTGGA 59.993 57.143 0.00 0.00 41.75 3.86
52 53 3.379658 TAGGAACTCACTCCCCTGGAGA 61.380 54.545 16.76 0.00 46.56 3.71
53 54 4.867514 TAGGAACTCACTCCCCTGGAGAA 61.868 52.174 16.76 3.89 46.56 2.87
54 55 6.660048 TAGGAACTCACTCCCCTGGAGAAG 62.660 54.167 16.76 14.25 46.56 2.85
59 60 4.722535 TCCCCTGGAGAAGCCGCT 62.723 66.667 0.00 0.00 40.66 5.52
60 61 2.764128 CCCCTGGAGAAGCCGCTA 60.764 66.667 0.00 0.00 40.66 4.26
61 62 2.143419 CCCCTGGAGAAGCCGCTAT 61.143 63.158 0.00 0.00 40.66 2.97
62 63 1.700042 CCCCTGGAGAAGCCGCTATT 61.700 60.000 0.00 0.00 40.66 1.73
63 64 0.250081 CCCTGGAGAAGCCGCTATTC 60.250 60.000 0.00 0.00 40.66 1.75
64 65 0.250081 CCTGGAGAAGCCGCTATTCC 60.250 60.000 13.65 13.65 40.66 3.01
65 66 0.465705 CTGGAGAAGCCGCTATTCCA 59.534 55.000 19.39 19.39 40.66 3.53
66 67 1.071385 CTGGAGAAGCCGCTATTCCAT 59.929 52.381 20.34 0.00 40.66 3.41
67 68 1.070758 TGGAGAAGCCGCTATTCCATC 59.929 52.381 17.57 1.27 40.66 3.51
68 69 1.070758 GGAGAAGCCGCTATTCCATCA 59.929 52.381 15.04 0.00 0.00 3.07
69 70 2.485479 GGAGAAGCCGCTATTCCATCAA 60.485 50.000 15.04 0.00 0.00 2.57
70 71 3.406764 GAGAAGCCGCTATTCCATCAAT 58.593 45.455 0.00 0.00 0.00 2.57
71 72 3.144506 AGAAGCCGCTATTCCATCAATG 58.855 45.455 0.00 0.00 0.00 2.82
72 73 1.242076 AGCCGCTATTCCATCAATGC 58.758 50.000 0.00 0.00 0.00 3.56
73 74 0.242017 GCCGCTATTCCATCAATGCC 59.758 55.000 0.00 0.00 0.00 4.40
74 75 0.518636 CCGCTATTCCATCAATGCCG 59.481 55.000 0.00 0.00 0.00 5.69
75 76 1.511850 CGCTATTCCATCAATGCCGA 58.488 50.000 0.00 0.00 0.00 5.54
76 77 1.872952 CGCTATTCCATCAATGCCGAA 59.127 47.619 0.00 0.00 0.00 4.30
77 78 2.290367 CGCTATTCCATCAATGCCGAAA 59.710 45.455 0.00 0.00 0.00 3.46
78 79 3.243035 CGCTATTCCATCAATGCCGAAAA 60.243 43.478 0.00 0.00 0.00 2.29
79 80 4.293415 GCTATTCCATCAATGCCGAAAAG 58.707 43.478 0.00 0.00 0.00 2.27
80 81 4.036734 GCTATTCCATCAATGCCGAAAAGA 59.963 41.667 0.00 0.00 0.00 2.52
81 82 5.450412 GCTATTCCATCAATGCCGAAAAGAA 60.450 40.000 0.00 0.00 0.00 2.52
82 83 4.439305 TTCCATCAATGCCGAAAAGAAG 57.561 40.909 0.00 0.00 0.00 2.85
83 84 3.420893 TCCATCAATGCCGAAAAGAAGT 58.579 40.909 0.00 0.00 0.00 3.01
84 85 3.440173 TCCATCAATGCCGAAAAGAAGTC 59.560 43.478 0.00 0.00 0.00 3.01
85 86 3.191162 CCATCAATGCCGAAAAGAAGTCA 59.809 43.478 0.00 0.00 0.00 3.41
86 87 4.142315 CCATCAATGCCGAAAAGAAGTCAT 60.142 41.667 0.00 0.00 0.00 3.06
87 88 4.424061 TCAATGCCGAAAAGAAGTCATG 57.576 40.909 0.00 0.00 0.00 3.07
88 89 4.071423 TCAATGCCGAAAAGAAGTCATGA 58.929 39.130 0.00 0.00 0.00 3.07
89 90 4.154737 TCAATGCCGAAAAGAAGTCATGAG 59.845 41.667 0.00 0.00 0.00 2.90
90 91 2.426522 TGCCGAAAAGAAGTCATGAGG 58.573 47.619 0.00 0.00 0.00 3.86
91 92 1.131315 GCCGAAAAGAAGTCATGAGGC 59.869 52.381 0.00 0.00 35.00 4.70
92 93 2.426522 CCGAAAAGAAGTCATGAGGCA 58.573 47.619 0.00 0.00 0.00 4.75
93 94 2.160417 CCGAAAAGAAGTCATGAGGCAC 59.840 50.000 0.00 0.00 0.00 5.01
107 108 4.148825 GCACTCTCCCGTGGCGAT 62.149 66.667 0.00 0.00 35.47 4.58
108 109 2.202797 CACTCTCCCGTGGCGATG 60.203 66.667 0.00 0.00 0.00 3.84
109 110 2.362503 ACTCTCCCGTGGCGATGA 60.363 61.111 0.00 0.00 0.00 2.92
110 111 1.982395 ACTCTCCCGTGGCGATGAA 60.982 57.895 0.00 0.00 0.00 2.57
111 112 1.227089 CTCTCCCGTGGCGATGAAG 60.227 63.158 0.00 0.00 0.00 3.02
112 113 1.667154 CTCTCCCGTGGCGATGAAGA 61.667 60.000 0.00 0.00 0.00 2.87
113 114 1.227089 CTCCCGTGGCGATGAAGAG 60.227 63.158 0.00 0.00 0.00 2.85
114 115 1.667154 CTCCCGTGGCGATGAAGAGA 61.667 60.000 2.98 0.00 0.00 3.10
115 116 1.519455 CCCGTGGCGATGAAGAGAC 60.519 63.158 0.00 0.00 0.00 3.36
116 117 1.215382 CCGTGGCGATGAAGAGACA 59.785 57.895 0.00 0.00 0.00 3.41
117 118 0.389817 CCGTGGCGATGAAGAGACAA 60.390 55.000 0.00 0.00 0.00 3.18
118 119 0.994995 CGTGGCGATGAAGAGACAAG 59.005 55.000 0.00 0.00 0.00 3.16
119 120 0.723981 GTGGCGATGAAGAGACAAGC 59.276 55.000 0.00 0.00 0.00 4.01
120 121 0.321346 TGGCGATGAAGAGACAAGCA 59.679 50.000 0.00 0.00 32.30 3.91
121 122 1.065926 TGGCGATGAAGAGACAAGCAT 60.066 47.619 0.00 0.00 32.30 3.79
122 123 2.012673 GGCGATGAAGAGACAAGCATT 58.987 47.619 0.00 0.00 32.30 3.56
123 124 2.031437 GGCGATGAAGAGACAAGCATTC 59.969 50.000 0.00 0.00 32.30 2.67
124 125 2.031437 GCGATGAAGAGACAAGCATTCC 59.969 50.000 0.00 0.00 0.00 3.01
125 126 3.264947 CGATGAAGAGACAAGCATTCCA 58.735 45.455 0.00 0.00 0.00 3.53
126 127 3.063180 CGATGAAGAGACAAGCATTCCAC 59.937 47.826 0.00 0.00 0.00 4.02
127 128 3.490439 TGAAGAGACAAGCATTCCACA 57.510 42.857 0.00 0.00 0.00 4.17
128 129 3.819368 TGAAGAGACAAGCATTCCACAA 58.181 40.909 0.00 0.00 0.00 3.33
129 130 3.817084 TGAAGAGACAAGCATTCCACAAG 59.183 43.478 0.00 0.00 0.00 3.16
130 131 2.157738 AGAGACAAGCATTCCACAAGC 58.842 47.619 0.00 0.00 0.00 4.01
131 132 2.157738 GAGACAAGCATTCCACAAGCT 58.842 47.619 0.00 0.00 41.03 3.74
134 135 3.900446 AAGCATTCCACAAGCTTGC 57.100 47.368 26.27 11.38 45.99 4.01
135 136 1.042229 AAGCATTCCACAAGCTTGCA 58.958 45.000 26.27 7.81 45.99 4.08
136 137 0.601558 AGCATTCCACAAGCTTGCAG 59.398 50.000 26.27 18.16 34.37 4.41
137 138 0.316204 GCATTCCACAAGCTTGCAGT 59.684 50.000 26.27 4.09 33.58 4.40
138 139 1.541147 GCATTCCACAAGCTTGCAGTA 59.459 47.619 26.27 11.78 33.58 2.74
139 140 2.415090 GCATTCCACAAGCTTGCAGTAG 60.415 50.000 26.27 12.81 33.58 2.57
140 141 2.638480 TTCCACAAGCTTGCAGTAGT 57.362 45.000 26.27 2.45 0.00 2.73
141 142 2.638480 TCCACAAGCTTGCAGTAGTT 57.362 45.000 26.27 1.65 0.00 2.24
142 143 2.221169 TCCACAAGCTTGCAGTAGTTG 58.779 47.619 26.27 14.34 0.00 3.16
154 155 2.066262 CAGTAGTTGCAACCTACACGG 58.934 52.381 25.62 14.62 39.35 4.94
155 156 0.794473 GTAGTTGCAACCTACACGGC 59.206 55.000 25.62 4.09 35.61 5.68
156 157 0.393448 TAGTTGCAACCTACACGGCA 59.607 50.000 25.62 0.00 35.61 5.69
157 158 1.164041 AGTTGCAACCTACACGGCAC 61.164 55.000 25.62 0.00 35.74 5.01
158 159 1.894756 TTGCAACCTACACGGCACC 60.895 57.895 0.00 0.00 35.74 5.01
159 160 2.281208 GCAACCTACACGGCACCA 60.281 61.111 0.00 0.00 35.61 4.17
160 161 1.674322 GCAACCTACACGGCACCAT 60.674 57.895 0.00 0.00 35.61 3.55
161 162 1.241315 GCAACCTACACGGCACCATT 61.241 55.000 0.00 0.00 35.61 3.16
162 163 0.521291 CAACCTACACGGCACCATTG 59.479 55.000 0.00 0.00 35.61 2.82
171 172 4.972591 GCACCATTGCTCCAACAC 57.027 55.556 0.00 0.00 46.17 3.32
172 173 2.040330 GCACCATTGCTCCAACACA 58.960 52.632 0.00 0.00 46.17 3.72
173 174 0.318955 GCACCATTGCTCCAACACAC 60.319 55.000 0.00 0.00 46.17 3.82
174 175 1.031235 CACCATTGCTCCAACACACA 58.969 50.000 0.00 0.00 0.00 3.72
175 176 1.614903 CACCATTGCTCCAACACACAT 59.385 47.619 0.00 0.00 0.00 3.21
176 177 2.036217 CACCATTGCTCCAACACACATT 59.964 45.455 0.00 0.00 0.00 2.71
177 178 2.036217 ACCATTGCTCCAACACACATTG 59.964 45.455 0.00 0.00 0.00 2.82
178 179 2.036217 CCATTGCTCCAACACACATTGT 59.964 45.455 0.00 0.00 41.74 2.71
192 193 3.195683 TTGTGCACACAAGCGCTT 58.804 50.000 21.56 18.98 45.42 4.68
193 194 1.063972 TTGTGCACACAAGCGCTTC 59.936 52.632 22.21 9.43 45.42 3.86
194 195 1.375853 TTGTGCACACAAGCGCTTCT 61.376 50.000 22.21 5.69 45.42 2.85
195 196 1.369689 GTGCACACAAGCGCTTCTG 60.370 57.895 22.21 22.01 41.61 3.02
196 197 2.428071 GCACACAAGCGCTTCTGC 60.428 61.111 23.13 22.34 0.00 4.26
214 215 2.267961 GGTCATCGCCCCGACTTT 59.732 61.111 0.00 0.00 39.18 2.66
215 216 2.106683 GGTCATCGCCCCGACTTTG 61.107 63.158 0.00 0.00 39.18 2.77
216 217 1.375523 GTCATCGCCCCGACTTTGT 60.376 57.895 0.00 0.00 39.18 2.83
217 218 0.108520 GTCATCGCCCCGACTTTGTA 60.109 55.000 0.00 0.00 39.18 2.41
218 219 0.174845 TCATCGCCCCGACTTTGTAG 59.825 55.000 0.00 0.00 39.18 2.74
219 220 0.174845 CATCGCCCCGACTTTGTAGA 59.825 55.000 0.00 0.00 39.18 2.59
220 221 1.120530 ATCGCCCCGACTTTGTAGAT 58.879 50.000 0.00 0.00 39.18 1.98
221 222 0.174845 TCGCCCCGACTTTGTAGATG 59.825 55.000 0.00 0.00 0.00 2.90
222 223 1.429148 CGCCCCGACTTTGTAGATGC 61.429 60.000 0.00 0.00 0.00 3.91
223 224 1.429148 GCCCCGACTTTGTAGATGCG 61.429 60.000 0.00 0.00 0.00 4.73
224 225 0.108329 CCCCGACTTTGTAGATGCGT 60.108 55.000 0.00 0.00 0.00 5.24
225 226 0.999406 CCCGACTTTGTAGATGCGTG 59.001 55.000 0.00 0.00 0.00 5.34
226 227 0.370273 CCGACTTTGTAGATGCGTGC 59.630 55.000 0.00 0.00 0.00 5.34
227 228 0.023732 CGACTTTGTAGATGCGTGCG 59.976 55.000 0.00 0.00 0.00 5.34
228 229 1.068474 GACTTTGTAGATGCGTGCGT 58.932 50.000 0.00 0.00 0.00 5.24
229 230 1.459592 GACTTTGTAGATGCGTGCGTT 59.540 47.619 0.00 0.00 0.00 4.84
230 231 1.194547 ACTTTGTAGATGCGTGCGTTG 59.805 47.619 0.00 0.00 0.00 4.10
231 232 0.110419 TTTGTAGATGCGTGCGTTGC 60.110 50.000 0.00 0.00 0.00 4.17
259 260 6.148811 GTGCATGCTTACTAGTCCTTTACAAA 59.851 38.462 20.33 0.00 0.00 2.83
261 262 7.148255 TGCATGCTTACTAGTCCTTTACAAATG 60.148 37.037 20.33 0.00 0.00 2.32
565 581 5.538053 TGAATTCCTTGGTGCATTAGTTTCA 59.462 36.000 2.27 0.00 0.00 2.69
574 590 4.305769 GTGCATTAGTTTCACAATTGGCA 58.694 39.130 10.83 2.56 0.00 4.92
589 605 9.887629 TCACAATTGGCATTATCATGTAATTTT 57.112 25.926 10.83 0.00 32.01 1.82
625 641 7.138054 AGATTGTTACCTCAGTAATTAGGGG 57.862 40.000 0.00 0.00 40.50 4.79
652 668 7.469594 GCCACATGACATTCTTGACATATGAAT 60.470 37.037 10.38 0.00 35.38 2.57
716 733 3.292492 TTCAGTACTCGGGCTCATCTA 57.708 47.619 0.00 0.00 0.00 1.98
722 739 0.242286 CTCGGGCTCATCTACATCCG 59.758 60.000 0.00 0.00 38.92 4.18
880 903 5.985530 GCAGTGCTATTTTCAAAAGTTCCTT 59.014 36.000 8.18 0.00 0.00 3.36
888 911 7.898014 ATTTTCAAAAGTTCCTTACAGACCT 57.102 32.000 0.00 0.00 0.00 3.85
890 913 8.446599 TTTTCAAAAGTTCCTTACAGACCTAG 57.553 34.615 0.00 0.00 0.00 3.02
896 919 8.622948 AAAGTTCCTTACAGACCTAGAATTTG 57.377 34.615 0.00 0.00 0.00 2.32
958 982 1.890041 TTTGGCACGGACTTCACGG 60.890 57.895 0.00 0.00 35.23 4.94
1043 1067 9.755804 TTTTAATGATTTTACTGTTCACATGCA 57.244 25.926 0.00 0.00 0.00 3.96
1044 1068 9.755804 TTTAATGATTTTACTGTTCACATGCAA 57.244 25.926 0.00 0.00 0.00 4.08
1058 1098 2.200067 CATGCAAAGAACCAAAACGCA 58.800 42.857 0.00 0.00 0.00 5.24
1102 1150 4.590918 TGTTTTTCCCGACAAGGCATATA 58.409 39.130 0.00 0.00 39.21 0.86
1107 1155 3.035363 TCCCGACAAGGCATATACTTCA 58.965 45.455 0.00 0.00 39.21 3.02
1128 1176 8.036575 ACTTCATGTCCATTTTGTATTCATTGG 58.963 33.333 0.00 0.00 0.00 3.16
1130 1178 8.586879 TCATGTCCATTTTGTATTCATTGGTA 57.413 30.769 0.00 0.00 0.00 3.25
1369 1570 0.036765 ACGAACCAGCGGCTCATAAA 60.037 50.000 0.00 0.00 35.12 1.40
1384 1585 4.908156 GCTCATAAACAACATCATCATCGC 59.092 41.667 0.00 0.00 0.00 4.58
1421 1622 3.133542 CCACTTATCATCCAGCAGTGAGA 59.866 47.826 0.00 0.00 37.63 3.27
1434 1635 4.455533 CAGCAGTGAGATCTAGCTAGTAGG 59.544 50.000 20.10 0.00 33.59 3.18
1436 1637 4.695455 GCAGTGAGATCTAGCTAGTAGGAG 59.305 50.000 20.10 0.00 0.00 3.69
1439 1640 6.872020 CAGTGAGATCTAGCTAGTAGGAGTAC 59.128 46.154 20.10 11.49 0.00 2.73
1440 1641 6.013984 AGTGAGATCTAGCTAGTAGGAGTACC 60.014 46.154 20.10 2.55 0.00 3.34
1441 1642 5.845065 TGAGATCTAGCTAGTAGGAGTACCA 59.155 44.000 20.10 5.23 38.94 3.25
1444 1645 5.972327 TCTAGCTAGTAGGAGTACCACTT 57.028 43.478 20.10 0.00 38.94 3.16
1449 1650 4.440387 GCTAGTAGGAGTACCACTTCTTGC 60.440 50.000 9.93 9.93 35.25 4.01
1453 1654 1.443802 GAGTACCACTTCTTGCTGCC 58.556 55.000 0.00 0.00 0.00 4.85
1514 1715 3.781307 CCATGTCCGGCCGGAGAA 61.781 66.667 46.28 35.79 46.16 2.87
1515 1716 2.267642 CATGTCCGGCCGGAGAAA 59.732 61.111 46.28 33.19 46.16 2.52
1780 1990 0.178973 TCTTCGTCCAGGTGTCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
1930 2140 3.991051 CTGTCCAGGTCACGCGGT 61.991 66.667 12.47 0.00 0.00 5.68
2313 3040 4.559862 ACTCTAGATCAAAACCACCCAG 57.440 45.455 0.00 0.00 0.00 4.45
2314 3041 4.168101 ACTCTAGATCAAAACCACCCAGA 58.832 43.478 0.00 0.00 0.00 3.86
2324 3051 2.200373 ACCACCCAGAAACTATGCAC 57.800 50.000 0.00 0.00 0.00 4.57
2370 3097 1.015109 CACAGCCTAGCAGCTTGATG 58.985 55.000 0.00 4.12 42.61 3.07
2408 3135 3.181489 GCTAGTACGTGCACCTCTTGTAT 60.181 47.826 12.15 1.20 0.00 2.29
2441 3168 1.066929 TGCTAGTGCTCAAATCGCTCA 60.067 47.619 0.00 0.00 40.48 4.26
2457 3184 2.044860 GCTCAGATCGATTTACGTCGG 58.955 52.381 0.00 0.00 41.74 4.79
2492 3219 0.810426 TGCGTAACTTGGCGAACACA 60.810 50.000 0.00 0.00 0.00 3.72
2501 3228 3.942748 ACTTGGCGAACACAGAAAAACTA 59.057 39.130 0.00 0.00 0.00 2.24
2517 3245 9.591404 CAGAAAAACTAATCGATGATTGATAGC 57.409 33.333 0.00 0.00 33.95 2.97
2533 3261 4.301505 GCCAATGGCTCTTGTCGA 57.698 55.556 18.47 0.00 46.69 4.20
2543 3271 2.724977 CTCTTGTCGAGCCTTGTACA 57.275 50.000 0.00 0.00 31.99 2.90
2551 4115 6.028146 TGTCGAGCCTTGTACACTTTATTA 57.972 37.500 0.00 0.00 0.00 0.98
2559 4123 8.784043 AGCCTTGTACACTTTATTACTTTTCTG 58.216 33.333 0.00 0.00 0.00 3.02
2560 4124 8.780249 GCCTTGTACACTTTATTACTTTTCTGA 58.220 33.333 0.00 0.00 0.00 3.27
2587 4152 6.726490 TCTTGATACAGATTACAGGGGTAC 57.274 41.667 0.00 0.00 0.00 3.34
2604 4169 8.709308 ACAGGGGTACGTACCTATATATACTAG 58.291 40.741 36.70 18.77 45.72 2.57
2616 4181 9.612066 ACCTATATATACTAGCTTACCGAGAAC 57.388 37.037 0.00 0.00 0.00 3.01
2628 4193 6.550108 AGCTTACCGAGAACTATCAATCCTAA 59.450 38.462 0.00 0.00 0.00 2.69
2649 4214 7.392673 TCCTAATCGGTAGCTAATACTACTTGG 59.607 40.741 0.00 0.00 41.88 3.61
2680 4245 1.640428 CATACCTGCACCTGTACGTG 58.360 55.000 0.00 0.00 36.80 4.49
2700 4265 4.321745 CGTGTAACTTCCGTACACATACAC 59.678 45.833 13.43 8.55 42.90 2.90
2734 4299 7.880059 ACCAAGTCGTGTTTAACTCTAATAC 57.120 36.000 0.00 0.00 0.00 1.89
2735 4300 6.870439 ACCAAGTCGTGTTTAACTCTAATACC 59.130 38.462 0.00 0.00 0.00 2.73
2736 4301 6.034256 CCAAGTCGTGTTTAACTCTAATACCG 59.966 42.308 0.00 0.00 0.00 4.02
2737 4302 5.098211 AGTCGTGTTTAACTCTAATACCGC 58.902 41.667 0.00 0.00 0.00 5.68
2738 4303 4.858692 GTCGTGTTTAACTCTAATACCGCA 59.141 41.667 0.00 0.00 0.00 5.69
2739 4304 5.517770 GTCGTGTTTAACTCTAATACCGCAT 59.482 40.000 0.00 0.00 0.00 4.73
2753 4318 1.286570 CGCATCCTGCAACAAAGCA 59.713 52.632 0.00 0.00 45.36 3.91
2758 4332 1.301165 CCTGCAACAAAGCAAGGGC 60.301 57.895 0.00 0.00 45.13 5.19
3130 4748 4.664267 AGACTGGCCAGGCAGGGA 62.664 66.667 39.69 0.00 39.50 4.20
3131 4749 4.106925 GACTGGCCAGGCAGGGAG 62.107 72.222 34.67 8.43 36.17 4.30
3277 4896 4.980805 GTGTCCGTGGCGCTTGGA 62.981 66.667 7.64 9.68 0.00 3.53
3344 4963 0.507358 CATCGCATGAGAGCATCACG 59.493 55.000 5.15 0.00 41.91 4.35
3371 4990 3.588906 AGTGTCGTGGCGTCGTGA 61.589 61.111 0.00 0.00 0.00 4.35
3381 5000 1.149987 GGCGTCGTGAAATTGGTGTA 58.850 50.000 0.00 0.00 0.00 2.90
3389 5008 5.747197 GTCGTGAAATTGGTGTAGATACGAT 59.253 40.000 0.00 0.00 39.69 3.73
3390 5009 5.975344 TCGTGAAATTGGTGTAGATACGATC 59.025 40.000 0.00 0.00 33.75 3.69
3395 5014 9.173021 TGAAATTGGTGTAGATACGATCAAAAT 57.827 29.630 0.00 0.00 0.00 1.82
3398 5017 5.286438 TGGTGTAGATACGATCAAAATCCG 58.714 41.667 0.00 0.00 0.00 4.18
3400 5019 6.039605 TGGTGTAGATACGATCAAAATCCGTA 59.960 38.462 0.00 0.00 0.00 4.02
3401 5020 7.088905 GGTGTAGATACGATCAAAATCCGTAT 58.911 38.462 0.00 0.00 35.87 3.06
3402 5021 7.061905 GGTGTAGATACGATCAAAATCCGTATG 59.938 40.741 10.73 0.00 34.61 2.39
3403 5022 7.594015 GTGTAGATACGATCAAAATCCGTATGT 59.406 37.037 10.73 9.49 34.61 2.29
3404 5023 8.785946 TGTAGATACGATCAAAATCCGTATGTA 58.214 33.333 10.73 8.63 34.61 2.29
3405 5024 9.616634 GTAGATACGATCAAAATCCGTATGTAA 57.383 33.333 10.73 0.00 33.88 2.41
3526 5147 0.902531 GTCATGGTTCTTCCCTCGGA 59.097 55.000 0.00 0.00 34.77 4.55
3723 5344 0.321653 GGCCACTGGACGATCACTTT 60.322 55.000 0.00 0.00 0.00 2.66
3821 5442 4.668576 TCTGCAAGCTGAAAAGATTACG 57.331 40.909 0.00 0.00 0.00 3.18
3828 5449 2.617021 GCTGAAAAGATTACGTCCCCCA 60.617 50.000 0.00 0.00 0.00 4.96
3884 5505 2.742053 ACCATCATGAAAAGAACCGTCG 59.258 45.455 0.00 0.00 0.00 5.12
3902 5523 3.340928 GTCGGTGTTTAGCTTTACCCAT 58.659 45.455 0.00 0.00 0.00 4.00
3978 5599 6.176975 CATGGAGTAACGTGCAATTAAAGA 57.823 37.500 0.00 0.00 0.00 2.52
4175 5796 5.104735 GGACCTCTCTAATTCATGAAGTGGT 60.105 44.000 18.22 16.32 0.00 4.16
4213 5835 2.167075 GCCATTCCTTCCAACATTCTGG 59.833 50.000 0.00 0.00 37.87 3.86
4348 5971 2.936498 CGGACATATGTTGGTGACTTCC 59.064 50.000 10.30 2.18 0.00 3.46
4352 5975 5.241403 ACATATGTTGGTGACTTCCAAGA 57.759 39.130 1.41 0.00 46.35 3.02
4439 6062 2.635915 ACTGTTGGAGGAACATCCGTTA 59.364 45.455 1.22 0.00 43.78 3.18
4441 6064 4.261801 CTGTTGGAGGAACATCCGTTATT 58.738 43.478 1.22 0.00 43.78 1.40
4500 6123 1.591703 TGCTAGACGCAGGTTGAGG 59.408 57.895 0.00 0.00 45.47 3.86
4588 6211 2.024560 TGGTCCCCATGCAATTGTATCA 60.025 45.455 6.00 0.00 0.00 2.15
4643 6266 4.768448 TGATTTCATTCACATCACAAGGCT 59.232 37.500 0.00 0.00 0.00 4.58
4710 6334 2.831685 AGCAGTTCGGACACATAACA 57.168 45.000 0.00 0.00 0.00 2.41
4751 6376 2.290450 GGGTGACCGGTTTGAAGGAATA 60.290 50.000 9.42 0.00 43.64 1.75
4758 6383 3.453353 CCGGTTTGAAGGAATAGGGTCTA 59.547 47.826 0.00 0.00 0.00 2.59
4782 6407 5.251700 AGGTATCCAATTGTCTCTCCAAACT 59.748 40.000 4.43 0.00 0.00 2.66
4808 6433 1.019673 CTTGATCCATTGCCCACTCG 58.980 55.000 0.00 0.00 0.00 4.18
4826 6451 2.352960 CTCGCCAGACTATGCCTTTTTC 59.647 50.000 0.00 0.00 0.00 2.29
4908 6534 2.363680 CGTATCCTCAAGCTGACCATCT 59.636 50.000 0.00 0.00 0.00 2.90
4947 6573 0.679505 ACAGTCGAGCACAAAGGCTA 59.320 50.000 0.00 0.00 45.99 3.93
4949 6575 2.289694 ACAGTCGAGCACAAAGGCTATT 60.290 45.455 0.00 0.00 45.99 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.535331 GTTTGTGTGATTGCCGTTGTT 58.465 42.857 0.00 0.00 0.00 2.83
3 4 0.593773 GCGTTTGTGTGATTGCCGTT 60.594 50.000 0.00 0.00 0.00 4.44
4 5 1.008995 GCGTTTGTGTGATTGCCGT 60.009 52.632 0.00 0.00 0.00 5.68
5 6 1.009108 TGCGTTTGTGTGATTGCCG 60.009 52.632 0.00 0.00 0.00 5.69
6 7 0.248825 TGTGCGTTTGTGTGATTGCC 60.249 50.000 0.00 0.00 0.00 4.52
7 8 0.845768 GTGTGCGTTTGTGTGATTGC 59.154 50.000 0.00 0.00 0.00 3.56
8 9 2.473530 AGTGTGCGTTTGTGTGATTG 57.526 45.000 0.00 0.00 0.00 2.67
9 10 2.032030 GCTAGTGTGCGTTTGTGTGATT 60.032 45.455 0.00 0.00 0.00 2.57
11 12 0.934496 GCTAGTGTGCGTTTGTGTGA 59.066 50.000 0.00 0.00 0.00 3.58
12 13 0.937304 AGCTAGTGTGCGTTTGTGTG 59.063 50.000 0.00 0.00 38.13 3.82
13 14 2.404215 CTAGCTAGTGTGCGTTTGTGT 58.596 47.619 12.92 0.00 38.13 3.72
14 15 1.726791 CCTAGCTAGTGTGCGTTTGTG 59.273 52.381 19.31 0.00 38.13 3.33
15 16 1.616865 TCCTAGCTAGTGTGCGTTTGT 59.383 47.619 19.31 0.00 38.13 2.83
16 17 2.363788 TCCTAGCTAGTGTGCGTTTG 57.636 50.000 19.31 1.05 38.13 2.93
17 18 2.299297 AGTTCCTAGCTAGTGTGCGTTT 59.701 45.455 19.31 0.00 38.13 3.60
18 19 1.893801 AGTTCCTAGCTAGTGTGCGTT 59.106 47.619 19.31 0.00 38.13 4.84
19 20 1.473278 GAGTTCCTAGCTAGTGTGCGT 59.527 52.381 19.31 0.00 38.13 5.24
20 21 1.472878 TGAGTTCCTAGCTAGTGTGCG 59.527 52.381 19.31 3.92 38.13 5.34
21 22 2.494073 AGTGAGTTCCTAGCTAGTGTGC 59.506 50.000 19.31 6.84 0.00 4.57
22 23 3.129638 GGAGTGAGTTCCTAGCTAGTGTG 59.870 52.174 19.31 4.65 34.27 3.82
23 24 3.358118 GGAGTGAGTTCCTAGCTAGTGT 58.642 50.000 19.31 0.76 34.27 3.55
24 25 2.691011 GGGAGTGAGTTCCTAGCTAGTG 59.309 54.545 19.31 10.88 37.40 2.74
25 26 2.358405 GGGGAGTGAGTTCCTAGCTAGT 60.358 54.545 19.31 0.28 37.40 2.57
26 27 2.091555 AGGGGAGTGAGTTCCTAGCTAG 60.092 54.545 14.20 14.20 37.40 3.42
27 28 1.930914 AGGGGAGTGAGTTCCTAGCTA 59.069 52.381 0.00 0.00 37.40 3.32
28 29 0.713579 AGGGGAGTGAGTTCCTAGCT 59.286 55.000 0.00 0.00 37.40 3.32
29 30 0.827368 CAGGGGAGTGAGTTCCTAGC 59.173 60.000 0.00 0.00 37.40 3.42
30 31 1.007238 TCCAGGGGAGTGAGTTCCTAG 59.993 57.143 0.00 0.00 37.40 3.02
31 32 1.007238 CTCCAGGGGAGTGAGTTCCTA 59.993 57.143 4.08 0.00 44.25 2.94
32 33 0.252467 CTCCAGGGGAGTGAGTTCCT 60.252 60.000 4.08 0.00 44.25 3.36
33 34 2.291856 CTCCAGGGGAGTGAGTTCC 58.708 63.158 4.08 0.00 44.25 3.62
42 43 2.605535 ATAGCGGCTTCTCCAGGGGA 62.606 60.000 8.26 0.00 34.01 4.81
43 44 1.700042 AATAGCGGCTTCTCCAGGGG 61.700 60.000 8.26 0.00 34.01 4.79
44 45 0.250081 GAATAGCGGCTTCTCCAGGG 60.250 60.000 8.26 0.00 34.01 4.45
45 46 0.250081 GGAATAGCGGCTTCTCCAGG 60.250 60.000 19.62 0.00 34.01 4.45
46 47 0.465705 TGGAATAGCGGCTTCTCCAG 59.534 55.000 22.05 0.00 32.42 3.86
47 48 1.070758 GATGGAATAGCGGCTTCTCCA 59.929 52.381 25.79 25.79 40.36 3.86
48 49 1.070758 TGATGGAATAGCGGCTTCTCC 59.929 52.381 18.35 18.35 0.00 3.71
49 50 2.533266 TGATGGAATAGCGGCTTCTC 57.467 50.000 8.26 5.09 0.00 2.87
50 51 3.144506 CATTGATGGAATAGCGGCTTCT 58.855 45.455 8.26 0.00 0.00 2.85
51 52 2.351157 GCATTGATGGAATAGCGGCTTC 60.351 50.000 8.26 0.00 0.00 3.86
52 53 1.610522 GCATTGATGGAATAGCGGCTT 59.389 47.619 8.26 0.00 0.00 4.35
53 54 1.242076 GCATTGATGGAATAGCGGCT 58.758 50.000 7.98 7.98 0.00 5.52
54 55 0.242017 GGCATTGATGGAATAGCGGC 59.758 55.000 0.00 0.00 0.00 6.53
55 56 0.518636 CGGCATTGATGGAATAGCGG 59.481 55.000 0.00 0.00 0.00 5.52
56 57 1.511850 TCGGCATTGATGGAATAGCG 58.488 50.000 0.00 0.00 0.00 4.26
57 58 3.988379 TTTCGGCATTGATGGAATAGC 57.012 42.857 0.00 0.00 0.00 2.97
58 59 5.756195 TCTTTTCGGCATTGATGGAATAG 57.244 39.130 0.00 0.00 0.00 1.73
59 60 5.652014 ACTTCTTTTCGGCATTGATGGAATA 59.348 36.000 0.00 0.00 0.00 1.75
60 61 4.463891 ACTTCTTTTCGGCATTGATGGAAT 59.536 37.500 0.00 0.00 0.00 3.01
61 62 3.826157 ACTTCTTTTCGGCATTGATGGAA 59.174 39.130 0.00 0.00 0.00 3.53
62 63 3.420893 ACTTCTTTTCGGCATTGATGGA 58.579 40.909 0.00 0.00 0.00 3.41
63 64 3.191162 TGACTTCTTTTCGGCATTGATGG 59.809 43.478 0.00 0.00 0.00 3.51
64 65 4.424061 TGACTTCTTTTCGGCATTGATG 57.576 40.909 0.00 0.00 0.00 3.07
65 66 4.701651 TCATGACTTCTTTTCGGCATTGAT 59.298 37.500 0.00 0.00 0.00 2.57
66 67 4.071423 TCATGACTTCTTTTCGGCATTGA 58.929 39.130 0.00 0.00 0.00 2.57
67 68 4.409570 CTCATGACTTCTTTTCGGCATTG 58.590 43.478 0.00 0.00 0.00 2.82
68 69 3.441572 CCTCATGACTTCTTTTCGGCATT 59.558 43.478 0.00 0.00 0.00 3.56
69 70 3.012518 CCTCATGACTTCTTTTCGGCAT 58.987 45.455 0.00 0.00 0.00 4.40
70 71 2.426522 CCTCATGACTTCTTTTCGGCA 58.573 47.619 0.00 0.00 0.00 5.69
71 72 1.131315 GCCTCATGACTTCTTTTCGGC 59.869 52.381 0.00 0.00 0.00 5.54
72 73 2.160417 GTGCCTCATGACTTCTTTTCGG 59.840 50.000 0.00 0.00 0.00 4.30
73 74 3.070018 AGTGCCTCATGACTTCTTTTCG 58.930 45.455 0.00 0.00 0.00 3.46
74 75 4.322567 AGAGTGCCTCATGACTTCTTTTC 58.677 43.478 0.00 0.00 32.06 2.29
75 76 4.322567 GAGAGTGCCTCATGACTTCTTTT 58.677 43.478 0.00 0.00 41.58 2.27
76 77 3.307339 GGAGAGTGCCTCATGACTTCTTT 60.307 47.826 0.00 0.00 43.76 2.52
77 78 2.235898 GGAGAGTGCCTCATGACTTCTT 59.764 50.000 0.00 0.00 43.76 2.52
78 79 1.830477 GGAGAGTGCCTCATGACTTCT 59.170 52.381 0.00 0.00 43.76 2.85
79 80 1.134551 GGGAGAGTGCCTCATGACTTC 60.135 57.143 0.00 0.00 43.76 3.01
80 81 0.908198 GGGAGAGTGCCTCATGACTT 59.092 55.000 0.00 0.00 43.76 3.01
81 82 1.326213 CGGGAGAGTGCCTCATGACT 61.326 60.000 0.00 0.00 43.76 3.41
82 83 1.142748 CGGGAGAGTGCCTCATGAC 59.857 63.158 0.00 0.00 43.76 3.06
83 84 1.305297 ACGGGAGAGTGCCTCATGA 60.305 57.895 0.00 0.00 43.76 3.07
84 85 1.153489 CACGGGAGAGTGCCTCATG 60.153 63.158 5.21 0.00 43.76 3.07
85 86 2.362369 CCACGGGAGAGTGCCTCAT 61.362 63.158 0.00 0.00 43.76 2.90
86 87 2.997315 CCACGGGAGAGTGCCTCA 60.997 66.667 0.00 0.00 43.76 3.86
87 88 4.459089 GCCACGGGAGAGTGCCTC 62.459 72.222 0.00 0.00 40.59 4.70
90 91 4.148825 ATCGCCACGGGAGAGTGC 62.149 66.667 0.00 0.00 40.59 4.40
91 92 2.202797 CATCGCCACGGGAGAGTG 60.203 66.667 0.00 0.00 41.53 3.51
92 93 1.949847 CTTCATCGCCACGGGAGAGT 61.950 60.000 0.00 0.00 34.53 3.24
93 94 1.227089 CTTCATCGCCACGGGAGAG 60.227 63.158 0.00 0.00 34.53 3.20
94 95 1.667154 CTCTTCATCGCCACGGGAGA 61.667 60.000 0.00 0.00 35.71 3.71
95 96 1.227089 CTCTTCATCGCCACGGGAG 60.227 63.158 0.00 0.00 0.00 4.30
96 97 1.680989 TCTCTTCATCGCCACGGGA 60.681 57.895 0.00 0.00 0.00 5.14
97 98 1.519455 GTCTCTTCATCGCCACGGG 60.519 63.158 0.00 0.00 0.00 5.28
98 99 0.389817 TTGTCTCTTCATCGCCACGG 60.390 55.000 0.00 0.00 0.00 4.94
99 100 0.994995 CTTGTCTCTTCATCGCCACG 59.005 55.000 0.00 0.00 0.00 4.94
100 101 0.723981 GCTTGTCTCTTCATCGCCAC 59.276 55.000 0.00 0.00 0.00 5.01
101 102 0.321346 TGCTTGTCTCTTCATCGCCA 59.679 50.000 0.00 0.00 0.00 5.69
102 103 1.661341 ATGCTTGTCTCTTCATCGCC 58.339 50.000 0.00 0.00 0.00 5.54
103 104 2.031437 GGAATGCTTGTCTCTTCATCGC 59.969 50.000 0.00 0.00 0.00 4.58
104 105 3.063180 GTGGAATGCTTGTCTCTTCATCG 59.937 47.826 0.00 0.00 0.00 3.84
105 106 4.005650 TGTGGAATGCTTGTCTCTTCATC 58.994 43.478 0.00 0.00 0.00 2.92
106 107 4.025040 TGTGGAATGCTTGTCTCTTCAT 57.975 40.909 0.00 0.00 0.00 2.57
107 108 3.490439 TGTGGAATGCTTGTCTCTTCA 57.510 42.857 0.00 0.00 0.00 3.02
108 109 3.365767 GCTTGTGGAATGCTTGTCTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
109 110 2.555757 GCTTGTGGAATGCTTGTCTCTT 59.444 45.455 0.00 0.00 0.00 2.85
110 111 2.157738 GCTTGTGGAATGCTTGTCTCT 58.842 47.619 0.00 0.00 0.00 3.10
111 112 2.157738 AGCTTGTGGAATGCTTGTCTC 58.842 47.619 0.00 0.00 32.61 3.36
112 113 2.283145 AGCTTGTGGAATGCTTGTCT 57.717 45.000 0.00 0.00 32.61 3.41
116 117 1.000506 CTGCAAGCTTGTGGAATGCTT 59.999 47.619 26.55 0.00 46.38 3.91
117 118 0.601558 CTGCAAGCTTGTGGAATGCT 59.398 50.000 26.55 0.00 37.86 3.79
118 119 0.316204 ACTGCAAGCTTGTGGAATGC 59.684 50.000 26.55 12.61 37.60 3.56
119 120 2.816087 ACTACTGCAAGCTTGTGGAATG 59.184 45.455 26.55 14.95 37.60 2.67
120 121 3.146104 ACTACTGCAAGCTTGTGGAAT 57.854 42.857 26.55 11.30 37.60 3.01
121 122 2.618241 CAACTACTGCAAGCTTGTGGAA 59.382 45.455 26.55 10.32 37.60 3.53
122 123 2.221169 CAACTACTGCAAGCTTGTGGA 58.779 47.619 26.55 15.72 37.60 4.02
123 124 2.693797 CAACTACTGCAAGCTTGTGG 57.306 50.000 26.55 20.40 37.60 4.17
133 134 3.748916 CCGTGTAGGTTGCAACTACTGC 61.749 54.545 27.64 20.09 42.92 4.40
134 135 2.066262 CCGTGTAGGTTGCAACTACTG 58.934 52.381 27.64 20.11 41.03 2.74
135 136 1.607251 GCCGTGTAGGTTGCAACTACT 60.607 52.381 27.64 19.39 43.70 2.57
136 137 0.794473 GCCGTGTAGGTTGCAACTAC 59.206 55.000 27.64 24.26 43.70 2.73
137 138 0.393448 TGCCGTGTAGGTTGCAACTA 59.607 50.000 27.64 15.42 43.70 2.24
138 139 1.147376 TGCCGTGTAGGTTGCAACT 59.853 52.632 27.64 16.38 43.70 3.16
139 140 1.281656 GTGCCGTGTAGGTTGCAAC 59.718 57.895 21.59 21.59 43.70 4.17
140 141 1.894756 GGTGCCGTGTAGGTTGCAA 60.895 57.895 0.00 0.00 43.70 4.08
141 142 2.281208 GGTGCCGTGTAGGTTGCA 60.281 61.111 0.00 0.00 43.70 4.08
142 143 1.241315 AATGGTGCCGTGTAGGTTGC 61.241 55.000 0.00 0.00 43.70 4.17
143 144 0.521291 CAATGGTGCCGTGTAGGTTG 59.479 55.000 0.00 0.00 43.70 3.77
144 145 1.241315 GCAATGGTGCCGTGTAGGTT 61.241 55.000 0.00 0.00 45.68 3.50
145 146 1.674322 GCAATGGTGCCGTGTAGGT 60.674 57.895 0.00 0.00 45.68 3.08
146 147 3.187058 GCAATGGTGCCGTGTAGG 58.813 61.111 0.00 0.00 45.68 3.18
155 156 1.031235 TGTGTGTTGGAGCAATGGTG 58.969 50.000 0.00 0.00 0.00 4.17
156 157 1.999648 ATGTGTGTTGGAGCAATGGT 58.000 45.000 0.00 0.00 0.00 3.55
157 158 2.036217 ACAATGTGTGTTGGAGCAATGG 59.964 45.455 0.00 0.00 37.01 3.16
158 159 3.054166 CACAATGTGTGTTGGAGCAATG 58.946 45.455 5.00 0.00 43.08 2.82
159 160 3.374220 CACAATGTGTGTTGGAGCAAT 57.626 42.857 5.00 0.00 43.08 3.56
160 161 2.867287 CACAATGTGTGTTGGAGCAA 57.133 45.000 5.00 0.00 43.08 3.91
197 198 2.106683 CAAAGTCGGGGCGATGACC 61.107 63.158 0.00 0.00 38.42 4.02
198 199 0.108520 TACAAAGTCGGGGCGATGAC 60.109 55.000 0.00 0.00 38.42 3.06
199 200 0.174845 CTACAAAGTCGGGGCGATGA 59.825 55.000 0.00 0.00 38.42 2.92
200 201 0.174845 TCTACAAAGTCGGGGCGATG 59.825 55.000 0.00 0.00 38.42 3.84
201 202 1.120530 ATCTACAAAGTCGGGGCGAT 58.879 50.000 0.00 0.00 38.42 4.58
202 203 0.174845 CATCTACAAAGTCGGGGCGA 59.825 55.000 0.00 0.00 0.00 5.54
203 204 1.429148 GCATCTACAAAGTCGGGGCG 61.429 60.000 0.00 0.00 0.00 6.13
204 205 1.429148 CGCATCTACAAAGTCGGGGC 61.429 60.000 0.00 0.00 0.00 5.80
205 206 0.108329 ACGCATCTACAAAGTCGGGG 60.108 55.000 0.00 0.00 0.00 5.73
206 207 0.999406 CACGCATCTACAAAGTCGGG 59.001 55.000 0.00 0.00 0.00 5.14
207 208 0.370273 GCACGCATCTACAAAGTCGG 59.630 55.000 0.00 0.00 0.00 4.79
208 209 0.023732 CGCACGCATCTACAAAGTCG 59.976 55.000 0.00 0.00 0.00 4.18
209 210 1.068474 ACGCACGCATCTACAAAGTC 58.932 50.000 0.00 0.00 0.00 3.01
210 211 1.194547 CAACGCACGCATCTACAAAGT 59.805 47.619 0.00 0.00 0.00 2.66
211 212 1.869503 CAACGCACGCATCTACAAAG 58.130 50.000 0.00 0.00 0.00 2.77
212 213 0.110419 GCAACGCACGCATCTACAAA 60.110 50.000 0.00 0.00 0.00 2.83
213 214 1.224722 TGCAACGCACGCATCTACAA 61.225 50.000 0.00 0.00 33.55 2.41
214 215 1.666234 TGCAACGCACGCATCTACA 60.666 52.632 0.00 0.00 33.55 2.74
215 216 3.164576 TGCAACGCACGCATCTAC 58.835 55.556 0.00 0.00 33.55 2.59
230 231 1.324736 GACTAGTAAGCATGCACGTGC 59.675 52.381 33.11 33.11 45.38 5.34
231 232 1.927174 GGACTAGTAAGCATGCACGTG 59.073 52.381 21.98 12.28 0.00 4.49
232 233 1.825474 AGGACTAGTAAGCATGCACGT 59.175 47.619 21.98 7.14 0.00 4.49
233 234 2.586258 AGGACTAGTAAGCATGCACG 57.414 50.000 21.98 3.52 0.00 5.34
234 235 5.175859 TGTAAAGGACTAGTAAGCATGCAC 58.824 41.667 21.98 10.48 0.00 4.57
235 236 5.414789 TGTAAAGGACTAGTAAGCATGCA 57.585 39.130 21.98 0.00 0.00 3.96
236 237 6.737254 TTTGTAAAGGACTAGTAAGCATGC 57.263 37.500 10.51 10.51 0.00 4.06
237 238 8.268850 ACATTTGTAAAGGACTAGTAAGCATG 57.731 34.615 0.00 0.00 0.00 4.06
238 239 8.863872 AACATTTGTAAAGGACTAGTAAGCAT 57.136 30.769 0.00 0.00 0.00 3.79
239 240 8.685838 AAACATTTGTAAAGGACTAGTAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
530 543 6.461509 GCACCAAGGAATTCAGAAGAAAAAGA 60.462 38.462 7.93 0.00 37.29 2.52
531 544 5.693555 GCACCAAGGAATTCAGAAGAAAAAG 59.306 40.000 7.93 0.00 37.29 2.27
552 568 4.305769 TGCCAATTGTGAAACTAATGCAC 58.694 39.130 4.43 0.00 38.04 4.57
600 616 7.366551 CCCCCTAATTACTGAGGTAACAATCTT 60.367 40.741 0.00 0.00 40.22 2.40
625 641 2.161855 TGTCAAGAATGTCATGTGGCC 58.838 47.619 0.00 0.00 0.00 5.36
652 668 7.851387 TTTACTATGATGGTCGTGCATTTTA 57.149 32.000 0.00 0.00 0.00 1.52
702 719 1.333177 GGATGTAGATGAGCCCGAGT 58.667 55.000 0.00 0.00 0.00 4.18
704 721 1.179174 CCGGATGTAGATGAGCCCGA 61.179 60.000 0.00 0.00 39.31 5.14
918 942 4.546674 ACTTCCAGGAGTTTGGACATTTT 58.453 39.130 0.00 0.00 46.61 1.82
939 963 1.278637 CGTGAAGTCCGTGCCAAAC 59.721 57.895 0.00 0.00 0.00 2.93
958 982 1.526041 GTGATGCGAGATGCTCATGTC 59.474 52.381 0.00 0.00 46.63 3.06
1043 1067 3.518634 ATGTGTGCGTTTTGGTTCTTT 57.481 38.095 0.00 0.00 0.00 2.52
1044 1068 4.846779 ATATGTGTGCGTTTTGGTTCTT 57.153 36.364 0.00 0.00 0.00 2.52
1058 1098 4.537135 ACTCTGAACCGTGAATATGTGT 57.463 40.909 0.00 0.00 0.00 3.72
1102 1150 8.036575 CCAATGAATACAAAATGGACATGAAGT 58.963 33.333 0.00 0.00 33.28 3.01
1107 1155 8.980596 ACATACCAATGAATACAAAATGGACAT 58.019 29.630 0.00 0.00 36.54 3.06
1289 1490 1.590238 GAATTCGACCGTGAGCTGATG 59.410 52.381 0.00 0.00 0.00 3.07
1356 1557 2.419673 TGATGTTGTTTATGAGCCGCTG 59.580 45.455 0.00 0.00 0.00 5.18
1369 1570 1.741528 TGCAGCGATGATGATGTTGT 58.258 45.000 4.02 0.00 0.00 3.32
1384 1585 8.761575 ATGATAAGTGGTTTATTTTGTTGCAG 57.238 30.769 0.00 0.00 32.09 4.41
1421 1622 6.330778 AGAAGTGGTACTCCTACTAGCTAGAT 59.669 42.308 27.45 13.50 34.23 1.98
1434 1635 1.443802 GGCAGCAAGAAGTGGTACTC 58.556 55.000 0.00 0.00 35.75 2.59
1436 1637 0.602905 ACGGCAGCAAGAAGTGGTAC 60.603 55.000 0.00 0.00 35.75 3.34
1439 1640 2.620112 CCACGGCAGCAAGAAGTGG 61.620 63.158 0.00 1.85 45.01 4.00
1440 1641 1.893808 ACCACGGCAGCAAGAAGTG 60.894 57.895 0.00 0.00 0.00 3.16
1441 1642 1.893808 CACCACGGCAGCAAGAAGT 60.894 57.895 0.00 0.00 0.00 3.01
1514 1715 2.360726 GCGGACCGGTGGGAATTT 60.361 61.111 14.63 0.00 36.97 1.82
1515 1716 4.419921 GGCGGACCGGTGGGAATT 62.420 66.667 14.63 0.00 36.97 2.17
1683 1893 3.371097 GAGCGGGATGAAGACGGCA 62.371 63.158 0.00 0.00 35.65 5.69
1764 1974 1.313091 CGATCCTGACACCTGGACGA 61.313 60.000 0.00 0.00 42.18 4.20
1780 1990 0.733729 GAGTACTCTGCCACGACGAT 59.266 55.000 15.91 0.00 0.00 3.73
1914 2124 3.986006 GACCGCGTGACCTGGACA 61.986 66.667 4.92 0.00 0.00 4.02
1940 2150 3.878519 CCTCGTCGTCTCGCCCTC 61.879 72.222 0.00 0.00 0.00 4.30
2324 3051 1.394917 CTTGCTAGCTTTGCACTACGG 59.605 52.381 17.23 0.45 40.40 4.02
2353 3080 0.179702 TCCATCAAGCTGCTAGGCTG 59.820 55.000 0.90 0.00 42.24 4.85
2370 3097 5.334260 CGTACTAGCTAGCTACTGTTCATCC 60.334 48.000 20.67 4.53 0.00 3.51
2408 3135 0.397941 ACTAGCAAGCCAGCTTCACA 59.602 50.000 5.77 0.00 43.70 3.58
2441 3168 3.159446 CGCCGACGTAAATCGATCT 57.841 52.632 0.00 0.00 45.13 2.75
2457 3184 2.717809 GCAAGAGTTCCGTCGACGC 61.718 63.158 31.73 18.46 38.18 5.19
2477 3204 4.396790 AGTTTTTCTGTGTTCGCCAAGTTA 59.603 37.500 0.00 0.00 0.00 2.24
2492 3219 8.778358 GGCTATCAATCATCGATTAGTTTTTCT 58.222 33.333 0.00 0.00 30.44 2.52
2501 3228 4.157289 GCCATTGGCTATCAATCATCGATT 59.843 41.667 20.66 0.00 46.69 3.34
2530 3258 6.276832 AGTAATAAAGTGTACAAGGCTCGA 57.723 37.500 0.00 0.00 0.00 4.04
2533 3261 8.784043 CAGAAAAGTAATAAAGTGTACAAGGCT 58.216 33.333 0.00 0.00 0.00 4.58
2559 4123 7.775561 ACCCCTGTAATCTGTATCAAGAAAATC 59.224 37.037 0.00 0.00 0.00 2.17
2560 4124 7.643123 ACCCCTGTAATCTGTATCAAGAAAAT 58.357 34.615 0.00 0.00 0.00 1.82
2569 4133 4.829492 GGTACGTACCCCTGTAATCTGTAT 59.171 45.833 30.84 0.00 40.53 2.29
2587 4152 9.190858 CTCGGTAAGCTAGTATATATAGGTACG 57.809 40.741 0.00 6.39 31.02 3.67
2604 4169 5.203060 AGGATTGATAGTTCTCGGTAAGC 57.797 43.478 0.00 0.00 0.00 3.09
2610 4175 6.015027 ACCGATTAGGATTGATAGTTCTCG 57.985 41.667 0.00 0.00 45.00 4.04
2616 4181 9.953697 GTATTAGCTACCGATTAGGATTGATAG 57.046 37.037 0.00 0.00 45.00 2.08
2628 4193 6.016443 GTGTCCAAGTAGTATTAGCTACCGAT 60.016 42.308 0.00 0.00 41.54 4.18
2649 4214 1.076533 CAGGTATGCGTGTCCGTGTC 61.077 60.000 0.00 0.00 36.15 3.67
2680 4245 5.064441 AGGTGTATGTGTACGGAAGTTAC 57.936 43.478 0.00 0.00 46.40 2.50
2700 4265 4.402056 ACACGACTTGGTATTCCATAGG 57.598 45.455 0.00 0.00 43.91 2.57
2737 4302 1.337447 CCCTTGCTTTGTTGCAGGATG 60.337 52.381 0.25 0.00 44.27 3.51
2738 4303 0.971386 CCCTTGCTTTGTTGCAGGAT 59.029 50.000 0.25 0.00 44.27 3.24
2739 4304 1.747325 GCCCTTGCTTTGTTGCAGGA 61.747 55.000 0.25 0.00 44.27 3.86
2852 4446 0.240411 AGGAAGTACACGTCGTCAGC 59.760 55.000 0.00 0.00 0.00 4.26
2916 4528 2.034221 AGTTGCCGAAGAAGCCCC 59.966 61.111 0.00 0.00 0.00 5.80
3112 4730 3.655211 CCCTGCCTGGCCAGTCTT 61.655 66.667 30.63 0.00 0.00 3.01
3130 4748 2.108514 CATGAACCGGTGCGATGCT 61.109 57.895 8.52 0.00 0.00 3.79
3131 4749 2.404789 CATGAACCGGTGCGATGC 59.595 61.111 8.52 0.00 0.00 3.91
3277 4896 4.082523 CCATCCACGTGCTCCCGT 62.083 66.667 10.91 0.00 42.87 5.28
3347 4966 2.788176 CGCCACGACACTGCGTATG 61.788 63.158 0.00 0.00 43.59 2.39
3371 4990 8.621286 GGATTTTGATCGTATCTACACCAATTT 58.379 33.333 0.00 0.00 0.00 1.82
3381 5000 9.706691 AATTACATACGGATTTTGATCGTATCT 57.293 29.630 4.88 0.00 44.82 1.98
3689 5310 1.133025 GTGGCCATTGAGTTGGATTCG 59.867 52.381 9.72 0.00 39.25 3.34
3723 5344 5.141182 AGGTTTATCTCTAGCGATCCAGAA 58.859 41.667 0.00 0.00 0.00 3.02
3828 5449 3.392285 GGTATGGTATTACGGGACCCTTT 59.608 47.826 9.41 0.00 34.58 3.11
3884 5505 3.964411 AGGATGGGTAAAGCTAAACACC 58.036 45.455 0.00 0.00 0.00 4.16
3947 5568 4.038642 TGCACGTTACTCCATGCTGATATA 59.961 41.667 0.00 0.00 38.90 0.86
3973 5594 9.200817 CCAAGGGGAAATCAATTATCTTCTTTA 57.799 33.333 0.00 0.00 35.59 1.85
3978 5599 5.364735 CAGCCAAGGGGAAATCAATTATCTT 59.635 40.000 0.00 0.00 35.59 2.40
4175 5796 1.133945 TGGCTGTTCCAAGTGCTACAA 60.134 47.619 0.00 0.00 43.21 2.41
4243 5865 7.400339 AGAGAATTATGGTGGTATATGTCGGAT 59.600 37.037 0.00 0.00 0.00 4.18
4246 5868 7.148573 GCAAGAGAATTATGGTGGTATATGTCG 60.149 40.741 0.00 0.00 0.00 4.35
4352 5975 3.181434 TGGGTTAACAAGCACAAGAGGAT 60.181 43.478 8.10 0.00 0.00 3.24
4439 6062 4.508047 GGCCATCTGGAACCTGATATGAAT 60.508 45.833 11.73 0.00 37.39 2.57
4441 6064 2.373169 GGCCATCTGGAACCTGATATGA 59.627 50.000 11.73 0.00 37.39 2.15
4500 6123 2.550830 TGAGGAAGCCAACAGAGAAC 57.449 50.000 0.00 0.00 0.00 3.01
4588 6211 1.745141 GCGTCTCCAAGGCATGAAGAT 60.745 52.381 0.00 0.00 38.64 2.40
4710 6334 2.037772 CCTAGAGGTAATTGCCGCATCT 59.962 50.000 17.85 12.44 0.00 2.90
4751 6376 4.897051 AGACAATTGGATACCTAGACCCT 58.103 43.478 10.83 0.00 0.00 4.34
4758 6383 5.251700 AGTTTGGAGAGACAATTGGATACCT 59.748 40.000 10.83 0.00 0.00 3.08
4782 6407 1.677576 GGCAATGGATCAAGCATTCGA 59.322 47.619 0.00 0.00 0.00 3.71
4826 6451 1.202627 GCTATGGACTTGAGCTCCTGG 60.203 57.143 12.15 3.69 33.28 4.45
4908 6534 5.044993 ACTGTTAAAATCCCGGTATTACCCA 60.045 40.000 7.29 0.00 33.75 4.51
4947 6573 3.007398 GGAGACTGATTGATAGGCCGAAT 59.993 47.826 0.00 0.00 0.00 3.34
4949 6575 1.964223 GGAGACTGATTGATAGGCCGA 59.036 52.381 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.