Multiple sequence alignment - TraesCS4A01G393300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G393300 chr4A 100.000 2702 0 0 1 2702 669043239 669045940 0.000000e+00 4990.0
1 TraesCS4A01G393300 chr4A 92.923 650 33 6 863 1512 712734207 712734843 0.000000e+00 933.0
2 TraesCS4A01G393300 chr4A 91.846 650 40 6 863 1512 712764865 712765501 0.000000e+00 894.0
3 TraesCS4A01G393300 chr4A 95.181 498 19 3 1 493 712763882 712764379 0.000000e+00 782.0
4 TraesCS4A01G393300 chr4A 94.980 498 20 3 1 493 712733214 712733711 0.000000e+00 776.0
5 TraesCS4A01G393300 chr4A 93.583 374 12 3 490 861 712733791 712734154 5.090000e-152 547.0
6 TraesCS4A01G393300 chr4A 93.583 374 12 3 490 861 712764450 712764813 5.090000e-152 547.0
7 TraesCS4A01G393300 chr4A 95.312 64 3 0 1 64 544888225 544888288 4.760000e-18 102.0
8 TraesCS4A01G393300 chr4A 81.443 97 6 5 862 958 669088837 669088753 4.830000e-08 69.4
9 TraesCS4A01G393300 chr7A 91.987 1510 65 12 865 2343 21958597 21957113 0.000000e+00 2067.0
10 TraesCS4A01G393300 chr7A 92.734 867 42 9 863 1726 21712201 21711353 0.000000e+00 1232.0
11 TraesCS4A01G393300 chr7A 89.881 840 48 15 61 864 21713094 21712256 0.000000e+00 1046.0
12 TraesCS4A01G393300 chr7A 91.108 686 41 10 865 1548 21985701 21985034 0.000000e+00 911.0
13 TraesCS4A01G393300 chr7A 92.019 639 35 7 865 1503 21596889 21596267 0.000000e+00 883.0
14 TraesCS4A01G393300 chr7A 87.669 738 55 19 160 864 21959388 21958654 0.000000e+00 826.0
15 TraesCS4A01G393300 chr7A 90.047 633 39 7 160 768 21561679 21561047 0.000000e+00 798.0
16 TraesCS4A01G393300 chr7A 86.656 652 80 4 1103 1754 21609282 21609926 0.000000e+00 715.0
17 TraesCS4A01G393300 chr7A 85.517 435 43 16 445 866 21597371 21596944 1.150000e-118 436.0
18 TraesCS4A01G393300 chr7A 88.037 326 32 4 61 381 21597692 21597369 1.960000e-101 379.0
19 TraesCS4A01G393300 chr7A 87.730 326 33 4 61 381 21986505 21986182 9.130000e-100 374.0
20 TraesCS4A01G393300 chr7A 79.134 254 23 22 2009 2237 21610174 21610422 6.030000e-32 148.0
21 TraesCS4A01G393300 chr7A 85.000 140 13 4 1569 1700 22367153 22367014 4.690000e-28 135.0
22 TraesCS4A01G393300 chr7A 85.470 117 15 2 2365 2481 692780447 692780333 1.310000e-23 121.0
23 TraesCS4A01G393300 chr7A 95.122 41 1 1 2115 2154 22020972 22021012 2.250000e-06 63.9
24 TraesCS4A01G393300 chr7D 90.869 898 44 9 859 1755 21122092 21122952 0.000000e+00 1170.0
25 TraesCS4A01G393300 chr7D 90.950 895 43 9 862 1755 21485520 21484663 0.000000e+00 1170.0
26 TraesCS4A01G393300 chr7D 86.990 515 61 3 1240 1754 21852465 21851957 2.330000e-160 575.0
27 TraesCS4A01G393300 chr7D 84.679 607 28 27 273 861 21121476 21122035 1.830000e-151 545.0
28 TraesCS4A01G393300 chr7D 83.308 671 32 33 228 864 21486201 21485577 1.830000e-151 545.0
29 TraesCS4A01G393300 chr7D 89.286 448 21 10 1849 2282 21122962 21123396 1.100000e-148 536.0
30 TraesCS4A01G393300 chr7D 89.569 441 21 8 1855 2282 21484647 21484219 1.100000e-148 536.0
31 TraesCS4A01G393300 chr7D 77.668 506 58 34 1885 2370 21851813 21851343 9.600000e-65 257.0
32 TraesCS4A01G393300 chr7D 95.238 63 3 0 1 63 343751951 343752013 1.710000e-17 100.0
33 TraesCS4A01G393300 chr7D 93.023 43 3 0 228 270 21121414 21121456 2.250000e-06 63.9
34 TraesCS4A01G393300 chr7B 84.718 301 36 6 2397 2697 188953724 188953434 2.630000e-75 292.0
35 TraesCS4A01G393300 chr7B 92.857 70 3 2 1 70 83911119 83911052 1.710000e-17 100.0
36 TraesCS4A01G393300 chr7B 92.857 70 3 1 1 68 616099824 616099755 1.710000e-17 100.0
37 TraesCS4A01G393300 chr3D 83.281 317 44 5 2388 2702 84326665 84326356 1.580000e-72 283.0
38 TraesCS4A01G393300 chr3D 88.393 224 25 1 2478 2700 565790018 565789795 4.430000e-68 268.0
39 TraesCS4A01G393300 chr3D 87.665 227 26 2 2477 2702 198101118 198101343 2.060000e-66 263.0
40 TraesCS4A01G393300 chr3D 93.651 63 4 0 1 63 414409708 414409770 7.960000e-16 95.3
41 TraesCS4A01G393300 chr3D 92.308 65 5 0 1 65 263991701 263991637 2.860000e-15 93.5
42 TraesCS4A01G393300 chr6D 87.665 227 24 4 2477 2701 186960985 186960761 7.420000e-66 261.0
43 TraesCS4A01G393300 chr6D 87.111 225 27 2 2478 2700 314097917 314097693 1.240000e-63 254.0
44 TraesCS4A01G393300 chr6D 94.231 52 3 0 1 52 452467034 452467085 2.230000e-11 80.5
45 TraesCS4A01G393300 chr3B 87.611 226 24 4 2476 2700 363938255 363938033 2.670000e-65 259.0
46 TraesCS4A01G393300 chr2D 87.665 227 23 3 2477 2701 644417019 644417242 2.670000e-65 259.0
47 TraesCS4A01G393300 chr5B 86.784 227 28 2 2477 2702 276266932 276267157 4.470000e-63 252.0
48 TraesCS4A01G393300 chr5B 90.654 107 8 2 2382 2486 91884434 91884540 1.010000e-29 141.0
49 TraesCS4A01G393300 chr6B 82.014 278 27 11 2388 2643 336181307 336181031 5.860000e-52 215.0
50 TraesCS4A01G393300 chr4D 91.346 104 9 0 2382 2485 293864547 293864650 2.800000e-30 143.0
51 TraesCS4A01G393300 chr4D 88.571 70 8 0 1 70 211031117 211031186 4.790000e-13 86.1
52 TraesCS4A01G393300 chr4D 92.982 57 4 0 6 62 119749666 119749610 1.720000e-12 84.2
53 TraesCS4A01G393300 chr4D 94.231 52 3 0 1 52 489621473 489621422 2.230000e-11 80.5
54 TraesCS4A01G393300 chr2A 90.654 107 9 1 2382 2488 92494426 92494531 1.010000e-29 141.0
55 TraesCS4A01G393300 chr1D 92.000 100 8 0 2381 2480 473539123 473539222 1.010000e-29 141.0
56 TraesCS4A01G393300 chr1D 93.846 65 4 0 1 65 481342956 481342892 6.160000e-17 99.0
57 TraesCS4A01G393300 chr1D 91.429 70 6 0 1 70 442376687 442376618 2.210000e-16 97.1
58 TraesCS4A01G393300 chr1D 93.548 62 4 0 1 62 10750609 10750548 2.860000e-15 93.5
59 TraesCS4A01G393300 chr1D 92.063 63 5 0 1 63 348120797 348120859 3.710000e-14 89.8
60 TraesCS4A01G393300 chr1D 88.732 71 8 0 1 71 255832404 255832474 1.330000e-13 87.9
61 TraesCS4A01G393300 chr1D 93.220 59 4 0 1 59 416852076 416852134 1.330000e-13 87.9
62 TraesCS4A01G393300 chr1B 91.262 103 9 0 2379 2481 156596662 156596560 1.010000e-29 141.0
63 TraesCS4A01G393300 chr1B 95.238 63 3 0 1 63 453132560 453132498 1.710000e-17 100.0
64 TraesCS4A01G393300 chr5D 90.566 106 9 1 2388 2492 344825526 344825421 3.630000e-29 139.0
65 TraesCS4A01G393300 chr5D 95.161 62 3 0 1 62 277238996 277238935 6.160000e-17 99.0
66 TraesCS4A01G393300 chr5D 93.548 62 4 0 1 62 293405739 293405678 2.860000e-15 93.5
67 TraesCS4A01G393300 chr3A 96.825 63 2 0 1 63 498772546 498772608 3.680000e-19 106.0
68 TraesCS4A01G393300 chr3A 92.958 71 3 1 1 69 388801181 388801111 4.760000e-18 102.0
69 TraesCS4A01G393300 chr5A 95.238 63 3 0 1 63 547393352 547393414 1.710000e-17 100.0
70 TraesCS4A01G393300 chr5A 96.610 59 2 0 1 59 709722506 709722564 6.160000e-17 99.0
71 TraesCS4A01G393300 chr5A 87.059 85 8 2 1 82 46707030 46707114 2.860000e-15 93.5
72 TraesCS4A01G393300 chrUn 96.610 59 2 0 1 59 126734364 126734422 6.160000e-17 99.0
73 TraesCS4A01G393300 chrUn 90.769 65 6 0 1 65 9840392 9840456 1.330000e-13 87.9
74 TraesCS4A01G393300 chrUn 93.617 47 3 0 13 59 95563187 95563233 1.340000e-08 71.3
75 TraesCS4A01G393300 chr1A 95.161 62 3 0 2 63 511009218 511009157 6.160000e-17 99.0
76 TraesCS4A01G393300 chr1A 96.610 59 2 0 1 59 511009275 511009217 6.160000e-17 99.0
77 TraesCS4A01G393300 chr1A 93.651 63 4 0 1 63 6672282 6672344 7.960000e-16 95.3
78 TraesCS4A01G393300 chr1A 93.651 63 4 0 1 63 40555788 40555850 7.960000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G393300 chr4A 669043239 669045940 2701 False 4990.000000 4990 100.000000 1 2702 1 chr4A.!!$F2 2701
1 TraesCS4A01G393300 chr4A 712733214 712734843 1629 False 752.000000 933 93.828667 1 1512 3 chr4A.!!$F3 1511
2 TraesCS4A01G393300 chr4A 712763882 712765501 1619 False 741.000000 894 93.536667 1 1512 3 chr4A.!!$F4 1511
3 TraesCS4A01G393300 chr7A 21957113 21959388 2275 True 1446.500000 2067 89.828000 160 2343 2 chr7A.!!$R6 2183
4 TraesCS4A01G393300 chr7A 21711353 21713094 1741 True 1139.000000 1232 91.307500 61 1726 2 chr7A.!!$R5 1665
5 TraesCS4A01G393300 chr7A 21561047 21561679 632 True 798.000000 798 90.047000 160 768 1 chr7A.!!$R1 608
6 TraesCS4A01G393300 chr7A 21985034 21986505 1471 True 642.500000 911 89.419000 61 1548 2 chr7A.!!$R7 1487
7 TraesCS4A01G393300 chr7A 21596267 21597692 1425 True 566.000000 883 88.524333 61 1503 3 chr7A.!!$R4 1442
8 TraesCS4A01G393300 chr7A 21609282 21610422 1140 False 431.500000 715 82.895000 1103 2237 2 chr7A.!!$F2 1134
9 TraesCS4A01G393300 chr7D 21484219 21486201 1982 True 750.333333 1170 87.942333 228 2282 3 chr7D.!!$R1 2054
10 TraesCS4A01G393300 chr7D 21121414 21123396 1982 False 578.725000 1170 89.464250 228 2282 4 chr7D.!!$F2 2054
11 TraesCS4A01G393300 chr7D 21851343 21852465 1122 True 416.000000 575 82.329000 1240 2370 2 chr7D.!!$R2 1130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 1134 0.031857 CAATCACCAAACCAGCGCAA 59.968 50.0 11.47 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2693 0.038892 TTTGCGACGGAGACAGTACC 60.039 55.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 8.622948 AGAAAGAGGTAGTTATTCACCTTTTG 57.377 34.615 0.00 0.00 45.32 2.44
359 385 7.229306 CCATGATTGTGTACATATTTAGGCAGT 59.771 37.037 0.00 0.00 0.00 4.40
368 394 4.881273 ACATATTTAGGCAGTCAAATCGCA 59.119 37.500 0.00 0.00 0.00 5.10
440 466 4.894784 ACTATACTGATAAACCATGGCCG 58.105 43.478 13.04 0.00 0.00 6.13
443 469 2.643551 ACTGATAAACCATGGCCGAAG 58.356 47.619 13.04 4.95 0.00 3.79
563 677 8.501580 CATGTATCATTAGAAGCATCACGAAAT 58.498 33.333 0.00 0.00 0.00 2.17
634 749 7.500227 GGATGAATGTGATCAACCAGAGAAATA 59.500 37.037 0.00 0.00 40.81 1.40
797 945 1.103803 GTCATCGGTGGACTGAGCTA 58.896 55.000 0.00 0.00 34.27 3.32
798 946 1.066303 GTCATCGGTGGACTGAGCTAG 59.934 57.143 0.00 0.00 34.27 3.42
912 1120 2.419990 CGCCTACTCCACAATCCAATCA 60.420 50.000 0.00 0.00 0.00 2.57
918 1126 3.573967 ACTCCACAATCCAATCACCAAAC 59.426 43.478 0.00 0.00 0.00 2.93
921 1129 3.306225 CCACAATCCAATCACCAAACCAG 60.306 47.826 0.00 0.00 0.00 4.00
922 1130 2.299867 ACAATCCAATCACCAAACCAGC 59.700 45.455 0.00 0.00 0.00 4.85
923 1131 1.176527 ATCCAATCACCAAACCAGCG 58.823 50.000 0.00 0.00 0.00 5.18
924 1132 1.080569 CCAATCACCAAACCAGCGC 60.081 57.895 0.00 0.00 0.00 5.92
925 1133 1.659233 CAATCACCAAACCAGCGCA 59.341 52.632 11.47 0.00 0.00 6.09
926 1134 0.031857 CAATCACCAAACCAGCGCAA 59.968 50.000 11.47 0.00 0.00 4.85
927 1135 0.314935 AATCACCAAACCAGCGCAAG 59.685 50.000 11.47 1.76 43.44 4.01
960 1168 3.170717 ACCTCGAAACCCAAGATCTACA 58.829 45.455 0.00 0.00 0.00 2.74
962 1170 4.960469 ACCTCGAAACCCAAGATCTACATA 59.040 41.667 0.00 0.00 0.00 2.29
973 1181 5.221880 CAAGATCTACATAGACAGCAGAGC 58.778 45.833 0.00 0.00 34.72 4.09
1033 1241 2.044946 AGGCGGGGAAGTTGATGC 60.045 61.111 0.00 0.00 0.00 3.91
1069 1280 2.584608 CCAATTCGACGGAGGCCT 59.415 61.111 3.86 3.86 0.00 5.19
1070 1281 1.521681 CCAATTCGACGGAGGCCTC 60.522 63.158 25.59 25.59 0.00 4.70
1169 1380 3.480133 GGGGGTAGCTGCGATGGT 61.480 66.667 0.00 0.00 0.00 3.55
1338 1549 0.311165 ATTACCTCGACGATCTGGCG 59.689 55.000 0.00 6.48 37.29 5.69
1584 1795 0.377203 GTAGCCGCAAGTATGTTGCC 59.623 55.000 8.56 0.00 42.10 4.52
2007 2270 0.741221 CCTTCCTCCGTTGCAGTAGC 60.741 60.000 0.00 0.00 42.57 3.58
2024 2289 7.518731 GCAGTAGCATTTATAGTATCTCTGC 57.481 40.000 0.00 0.00 41.58 4.26
2163 2470 3.283751 TCTCGTGTTGTTTGGATGGTTT 58.716 40.909 0.00 0.00 0.00 3.27
2165 2472 4.158764 TCTCGTGTTGTTTGGATGGTTTTT 59.841 37.500 0.00 0.00 0.00 1.94
2227 2541 7.595130 GGATGACATTTACTCAACTTTTTGGTC 59.405 37.037 0.00 0.00 33.06 4.02
2239 2553 7.262048 TCAACTTTTTGGTCTTTGTTATCCAC 58.738 34.615 0.00 0.00 33.06 4.02
2246 2560 3.335579 GTCTTTGTTATCCACGCCTTCT 58.664 45.455 0.00 0.00 0.00 2.85
2261 2575 1.537202 CCTTCTTTCCTCTGCAAACCG 59.463 52.381 0.00 0.00 0.00 4.44
2306 2620 1.992519 GCCATCTCTGCACCATCCCT 61.993 60.000 0.00 0.00 0.00 4.20
2316 2630 1.000955 GCACCATCCCTGAGTATACCG 59.999 57.143 0.00 0.00 0.00 4.02
2344 2658 5.027460 TCCTGGCTCTTATACAGTTTACCA 58.973 41.667 0.00 0.00 0.00 3.25
2356 2670 3.443681 ACAGTTTACCATTGGTAGCATGC 59.556 43.478 10.51 10.51 39.52 4.06
2361 2675 1.285962 ACCATTGGTAGCATGCTTCCT 59.714 47.619 34.60 19.21 35.00 3.36
2364 2678 0.680921 TTGGTAGCATGCTTCCTGCC 60.681 55.000 34.60 23.80 40.56 4.85
2370 2684 1.033746 GCATGCTTCCTGCCTTGCTA 61.034 55.000 11.37 0.00 42.68 3.49
2371 2685 1.022735 CATGCTTCCTGCCTTGCTAG 58.977 55.000 0.00 0.00 42.00 3.42
2372 2686 0.106819 ATGCTTCCTGCCTTGCTAGG 60.107 55.000 10.15 10.15 45.02 3.02
2373 2687 1.200760 TGCTTCCTGCCTTGCTAGGA 61.201 55.000 19.07 4.39 45.05 2.94
2385 2699 4.130286 CTTGCTAGGAAGGAAGGTACTG 57.870 50.000 15.78 0.00 44.91 2.74
2386 2700 3.185880 TGCTAGGAAGGAAGGTACTGT 57.814 47.619 0.00 0.00 40.86 3.55
2387 2701 3.097614 TGCTAGGAAGGAAGGTACTGTC 58.902 50.000 0.00 0.00 40.86 3.51
2388 2702 3.245658 TGCTAGGAAGGAAGGTACTGTCT 60.246 47.826 0.00 0.00 40.86 3.41
2389 2703 3.382227 GCTAGGAAGGAAGGTACTGTCTC 59.618 52.174 0.00 0.00 40.86 3.36
2390 2704 2.822697 AGGAAGGAAGGTACTGTCTCC 58.177 52.381 0.00 0.00 40.86 3.71
2391 2705 1.477295 GGAAGGAAGGTACTGTCTCCG 59.523 57.143 0.00 0.00 40.86 4.63
2392 2706 2.169330 GAAGGAAGGTACTGTCTCCGT 58.831 52.381 0.00 0.00 40.86 4.69
2393 2707 1.836802 AGGAAGGTACTGTCTCCGTC 58.163 55.000 8.50 8.50 40.86 4.79
2394 2708 0.450983 GGAAGGTACTGTCTCCGTCG 59.549 60.000 10.00 0.00 40.86 5.12
2395 2709 0.179169 GAAGGTACTGTCTCCGTCGC 60.179 60.000 0.00 0.00 40.86 5.19
2396 2710 0.892358 AAGGTACTGTCTCCGTCGCA 60.892 55.000 0.00 0.00 40.86 5.10
2397 2711 0.892358 AGGTACTGTCTCCGTCGCAA 60.892 55.000 0.00 0.00 37.18 4.85
2398 2712 0.038892 GGTACTGTCTCCGTCGCAAA 60.039 55.000 0.00 0.00 0.00 3.68
2399 2713 1.603678 GGTACTGTCTCCGTCGCAAAA 60.604 52.381 0.00 0.00 0.00 2.44
2400 2714 2.334838 GTACTGTCTCCGTCGCAAAAT 58.665 47.619 0.00 0.00 0.00 1.82
2401 2715 2.736144 ACTGTCTCCGTCGCAAAATA 57.264 45.000 0.00 0.00 0.00 1.40
2402 2716 3.034721 ACTGTCTCCGTCGCAAAATAA 57.965 42.857 0.00 0.00 0.00 1.40
2403 2717 2.993899 ACTGTCTCCGTCGCAAAATAAG 59.006 45.455 0.00 0.00 0.00 1.73
2404 2718 2.993899 CTGTCTCCGTCGCAAAATAAGT 59.006 45.455 0.00 0.00 0.00 2.24
2405 2719 2.734606 TGTCTCCGTCGCAAAATAAGTG 59.265 45.455 0.00 0.00 0.00 3.16
2406 2720 2.735134 GTCTCCGTCGCAAAATAAGTGT 59.265 45.455 0.00 0.00 0.00 3.55
2407 2721 2.991190 TCTCCGTCGCAAAATAAGTGTC 59.009 45.455 0.00 0.00 0.00 3.67
2408 2722 2.993899 CTCCGTCGCAAAATAAGTGTCT 59.006 45.455 0.00 0.00 0.00 3.41
2409 2723 2.991190 TCCGTCGCAAAATAAGTGTCTC 59.009 45.455 0.00 0.00 0.00 3.36
2410 2724 2.734606 CCGTCGCAAAATAAGTGTCTCA 59.265 45.455 0.00 0.00 0.00 3.27
2411 2725 3.185594 CCGTCGCAAAATAAGTGTCTCAA 59.814 43.478 0.00 0.00 0.00 3.02
2412 2726 4.141680 CGTCGCAAAATAAGTGTCTCAAC 58.858 43.478 0.00 0.00 0.00 3.18
2413 2727 4.084537 CGTCGCAAAATAAGTGTCTCAACT 60.085 41.667 0.00 0.00 0.00 3.16
2414 2728 5.558273 CGTCGCAAAATAAGTGTCTCAACTT 60.558 40.000 0.00 0.00 42.89 2.66
2415 2729 6.199393 GTCGCAAAATAAGTGTCTCAACTTT 58.801 36.000 0.00 0.00 40.77 2.66
2416 2730 7.349711 GTCGCAAAATAAGTGTCTCAACTTTA 58.650 34.615 0.00 0.00 40.77 1.85
2417 2731 8.015658 GTCGCAAAATAAGTGTCTCAACTTTAT 58.984 33.333 0.00 0.00 40.77 1.40
2418 2732 9.210329 TCGCAAAATAAGTGTCTCAACTTTATA 57.790 29.630 0.00 0.00 40.77 0.98
2419 2733 9.262472 CGCAAAATAAGTGTCTCAACTTTATAC 57.738 33.333 0.00 0.00 40.77 1.47
2429 2743 9.857957 GTGTCTCAACTTTATACTAGCTTTAGT 57.142 33.333 0.00 0.00 0.00 2.24
2464 2778 9.774742 GTATCAAGCTTAAGACACTTATTTTGG 57.225 33.333 6.67 0.00 0.00 3.28
2465 2779 7.214467 TCAAGCTTAAGACACTTATTTTGGG 57.786 36.000 6.67 0.00 0.00 4.12
2466 2780 7.001674 TCAAGCTTAAGACACTTATTTTGGGA 58.998 34.615 6.67 0.00 0.00 4.37
2467 2781 6.819397 AGCTTAAGACACTTATTTTGGGAC 57.181 37.500 6.67 0.00 0.00 4.46
2468 2782 5.411669 AGCTTAAGACACTTATTTTGGGACG 59.588 40.000 6.67 0.00 0.00 4.79
2469 2783 5.391629 GCTTAAGACACTTATTTTGGGACGG 60.392 44.000 6.67 0.00 0.00 4.79
2470 2784 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2471 2785 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2472 2786 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2473 2787 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2474 2788 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2475 2789 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2476 2790 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2477 2791 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2478 2792 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2479 2793 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2480 2794 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
2481 2795 1.961133 TGGGACGGAGGGAGTATTTT 58.039 50.000 0.00 0.00 0.00 1.82
2482 2796 3.119009 TGGGACGGAGGGAGTATTTTA 57.881 47.619 0.00 0.00 0.00 1.52
2483 2797 3.660959 TGGGACGGAGGGAGTATTTTAT 58.339 45.455 0.00 0.00 0.00 1.40
2484 2798 4.818447 TGGGACGGAGGGAGTATTTTATA 58.182 43.478 0.00 0.00 0.00 0.98
2485 2799 5.408824 TGGGACGGAGGGAGTATTTTATAT 58.591 41.667 0.00 0.00 0.00 0.86
2486 2800 5.482878 TGGGACGGAGGGAGTATTTTATATC 59.517 44.000 0.00 0.00 0.00 1.63
2487 2801 5.720520 GGGACGGAGGGAGTATTTTATATCT 59.279 44.000 0.00 0.00 0.00 1.98
2488 2802 6.212993 GGGACGGAGGGAGTATTTTATATCTT 59.787 42.308 0.00 0.00 0.00 2.40
2489 2803 7.256583 GGGACGGAGGGAGTATTTTATATCTTT 60.257 40.741 0.00 0.00 0.00 2.52
2490 2804 8.155510 GGACGGAGGGAGTATTTTATATCTTTT 58.844 37.037 0.00 0.00 0.00 2.27
2491 2805 9.557061 GACGGAGGGAGTATTTTATATCTTTTT 57.443 33.333 0.00 0.00 0.00 1.94
2492 2806 9.338622 ACGGAGGGAGTATTTTATATCTTTTTG 57.661 33.333 0.00 0.00 0.00 2.44
2493 2807 8.784043 CGGAGGGAGTATTTTATATCTTTTTGG 58.216 37.037 0.00 0.00 0.00 3.28
2494 2808 9.078990 GGAGGGAGTATTTTATATCTTTTTGGG 57.921 37.037 0.00 0.00 0.00 4.12
2495 2809 9.862149 GAGGGAGTATTTTATATCTTTTTGGGA 57.138 33.333 0.00 0.00 0.00 4.37
2496 2810 9.642343 AGGGAGTATTTTATATCTTTTTGGGAC 57.358 33.333 0.00 0.00 0.00 4.46
2497 2811 9.642343 GGGAGTATTTTATATCTTTTTGGGACT 57.358 33.333 0.00 0.00 0.00 3.85
2508 2822 9.794719 ATATCTTTTTGGGACTAACCTATTAGC 57.205 33.333 0.00 0.00 41.48 3.09
2509 2823 7.023171 TCTTTTTGGGACTAACCTATTAGCA 57.977 36.000 0.00 0.00 41.48 3.49
2510 2824 7.639378 TCTTTTTGGGACTAACCTATTAGCAT 58.361 34.615 0.00 0.00 41.48 3.79
2511 2825 8.774183 TCTTTTTGGGACTAACCTATTAGCATA 58.226 33.333 0.00 0.00 41.48 3.14
2512 2826 8.974060 TTTTTGGGACTAACCTATTAGCATAG 57.026 34.615 0.00 0.00 41.48 2.23
2513 2827 7.685849 TTTGGGACTAACCTATTAGCATAGT 57.314 36.000 6.42 6.42 41.48 2.12
2514 2828 6.665992 TGGGACTAACCTATTAGCATAGTG 57.334 41.667 9.88 0.00 41.48 2.74
2515 2829 5.011738 TGGGACTAACCTATTAGCATAGTGC 59.988 44.000 12.89 12.89 41.48 4.40
2516 2830 5.480205 GGACTAACCTATTAGCATAGTGCC 58.520 45.833 9.88 8.08 41.48 5.01
2517 2831 5.246429 GGACTAACCTATTAGCATAGTGCCT 59.754 44.000 9.88 0.00 41.48 4.75
2518 2832 6.436532 GGACTAACCTATTAGCATAGTGCCTA 59.563 42.308 9.88 0.00 41.48 3.93
2519 2833 7.363094 GGACTAACCTATTAGCATAGTGCCTAG 60.363 44.444 9.88 0.00 41.48 3.02
2520 2834 7.011382 ACTAACCTATTAGCATAGTGCCTAGT 58.989 38.462 0.00 0.00 46.52 2.57
2521 2835 5.730296 ACCTATTAGCATAGTGCCTAGTG 57.270 43.478 0.00 0.00 46.52 2.74
2522 2836 4.021016 ACCTATTAGCATAGTGCCTAGTGC 60.021 45.833 0.00 0.00 46.52 4.40
2523 2837 2.910688 TTAGCATAGTGCCTAGTGCC 57.089 50.000 0.00 0.00 46.52 5.01
2524 2838 1.788229 TAGCATAGTGCCTAGTGCCA 58.212 50.000 0.00 0.00 46.52 4.92
2525 2839 0.467384 AGCATAGTGCCTAGTGCCAG 59.533 55.000 0.00 0.00 46.52 4.85
2526 2840 0.179000 GCATAGTGCCTAGTGCCAGT 59.821 55.000 1.42 0.00 37.42 4.00
2527 2841 1.407437 GCATAGTGCCTAGTGCCAGTT 60.407 52.381 1.42 0.00 37.42 3.16
2528 2842 2.941415 GCATAGTGCCTAGTGCCAGTTT 60.941 50.000 1.42 0.00 37.42 2.66
2529 2843 2.762535 TAGTGCCTAGTGCCAGTTTC 57.237 50.000 1.42 0.00 40.16 2.78
2530 2844 1.059913 AGTGCCTAGTGCCAGTTTCT 58.940 50.000 1.42 0.00 40.16 2.52
2531 2845 1.160137 GTGCCTAGTGCCAGTTTCTG 58.840 55.000 1.42 0.00 40.16 3.02
2532 2846 0.764890 TGCCTAGTGCCAGTTTCTGT 59.235 50.000 1.42 0.00 40.16 3.41
2533 2847 1.142870 TGCCTAGTGCCAGTTTCTGTT 59.857 47.619 1.42 0.00 40.16 3.16
2534 2848 2.230660 GCCTAGTGCCAGTTTCTGTTT 58.769 47.619 0.00 0.00 0.00 2.83
2535 2849 2.623416 GCCTAGTGCCAGTTTCTGTTTT 59.377 45.455 0.00 0.00 0.00 2.43
2536 2850 3.068165 GCCTAGTGCCAGTTTCTGTTTTT 59.932 43.478 0.00 0.00 0.00 1.94
2559 2873 8.472007 TTTTCCTTATTTTTGGCTTCTACAGA 57.528 30.769 0.00 0.00 0.00 3.41
2560 2874 8.472007 TTTCCTTATTTTTGGCTTCTACAGAA 57.528 30.769 0.00 0.00 0.00 3.02
2561 2875 8.472007 TTCCTTATTTTTGGCTTCTACAGAAA 57.528 30.769 0.00 0.00 33.07 2.52
2562 2876 8.472007 TCCTTATTTTTGGCTTCTACAGAAAA 57.528 30.769 0.00 0.00 33.07 2.29
2563 2877 8.576442 TCCTTATTTTTGGCTTCTACAGAAAAG 58.424 33.333 0.00 0.00 33.07 2.27
2564 2878 8.360390 CCTTATTTTTGGCTTCTACAGAAAAGT 58.640 33.333 0.00 0.00 33.07 2.66
2570 2884 9.744468 TTTTGGCTTCTACAGAAAAGTAATTTC 57.256 29.630 0.00 0.00 46.45 2.17
2582 2896 6.702716 AAAAGTAATTTCAAACGGAGTCCA 57.297 33.333 10.49 0.00 45.00 4.02
2583 2897 6.702716 AAAGTAATTTCAAACGGAGTCCAA 57.297 33.333 10.49 0.00 45.00 3.53
2584 2898 6.702716 AAGTAATTTCAAACGGAGTCCAAA 57.297 33.333 10.49 1.86 45.00 3.28
2585 2899 6.702716 AGTAATTTCAAACGGAGTCCAAAA 57.297 33.333 10.49 1.93 45.00 2.44
2586 2900 6.735130 AGTAATTTCAAACGGAGTCCAAAAG 58.265 36.000 10.49 0.00 45.00 2.27
2587 2901 4.584327 ATTTCAAACGGAGTCCAAAAGG 57.416 40.909 10.49 0.00 45.00 3.11
2588 2902 3.284793 TTCAAACGGAGTCCAAAAGGA 57.715 42.857 10.49 0.00 45.00 3.36
2589 2903 3.284793 TCAAACGGAGTCCAAAAGGAA 57.715 42.857 10.49 0.00 45.00 3.36
2590 2904 3.827722 TCAAACGGAGTCCAAAAGGAAT 58.172 40.909 10.49 0.00 45.00 3.01
2591 2905 4.975631 TCAAACGGAGTCCAAAAGGAATA 58.024 39.130 10.49 0.00 45.00 1.75
2592 2906 5.378332 TCAAACGGAGTCCAAAAGGAATAA 58.622 37.500 10.49 0.00 45.00 1.40
2593 2907 5.828859 TCAAACGGAGTCCAAAAGGAATAAA 59.171 36.000 10.49 0.00 45.00 1.40
2594 2908 6.321690 TCAAACGGAGTCCAAAAGGAATAAAA 59.678 34.615 10.49 0.00 45.00 1.52
2595 2909 5.700722 ACGGAGTCCAAAAGGAATAAAAC 57.299 39.130 10.49 0.00 29.74 2.43
2596 2910 5.382616 ACGGAGTCCAAAAGGAATAAAACT 58.617 37.500 10.49 0.00 29.74 2.66
2597 2911 5.831525 ACGGAGTCCAAAAGGAATAAAACTT 59.168 36.000 10.49 0.00 29.74 2.66
2598 2912 6.322969 ACGGAGTCCAAAAGGAATAAAACTTT 59.677 34.615 10.49 0.00 29.74 2.66
2599 2913 7.503230 ACGGAGTCCAAAAGGAATAAAACTTTA 59.497 33.333 10.49 0.00 29.74 1.85
2600 2914 7.806487 CGGAGTCCAAAAGGAATAAAACTTTAC 59.194 37.037 10.49 0.00 35.99 2.01
2601 2915 7.806487 GGAGTCCAAAAGGAATAAAACTTTACG 59.194 37.037 3.60 0.00 35.99 3.18
2602 2916 8.454570 AGTCCAAAAGGAATAAAACTTTACGA 57.545 30.769 0.00 0.00 35.99 3.43
2603 2917 9.074576 AGTCCAAAAGGAATAAAACTTTACGAT 57.925 29.630 0.00 0.00 35.99 3.73
2604 2918 9.124807 GTCCAAAAGGAATAAAACTTTACGATG 57.875 33.333 0.00 0.00 35.99 3.84
2605 2919 9.069082 TCCAAAAGGAATAAAACTTTACGATGA 57.931 29.630 0.00 0.00 35.99 2.92
2606 2920 9.855021 CCAAAAGGAATAAAACTTTACGATGAT 57.145 29.630 0.00 0.00 35.99 2.45
2617 2931 8.797266 AAACTTTACGATGATTTTTCTTGGAC 57.203 30.769 0.00 0.00 0.00 4.02
2618 2932 6.909909 ACTTTACGATGATTTTTCTTGGACC 58.090 36.000 0.00 0.00 0.00 4.46
2619 2933 6.488683 ACTTTACGATGATTTTTCTTGGACCA 59.511 34.615 0.00 0.00 0.00 4.02
2620 2934 6.494893 TTACGATGATTTTTCTTGGACCAG 57.505 37.500 0.00 0.00 0.00 4.00
2621 2935 4.651778 ACGATGATTTTTCTTGGACCAGA 58.348 39.130 0.00 0.00 0.00 3.86
2622 2936 5.070001 ACGATGATTTTTCTTGGACCAGAA 58.930 37.500 0.00 0.00 0.00 3.02
2623 2937 5.182001 ACGATGATTTTTCTTGGACCAGAAG 59.818 40.000 0.00 0.00 34.22 2.85
2624 2938 5.412594 CGATGATTTTTCTTGGACCAGAAGA 59.587 40.000 0.00 0.00 34.22 2.87
2625 2939 6.581171 ATGATTTTTCTTGGACCAGAAGAC 57.419 37.500 0.00 0.00 34.22 3.01
2626 2940 5.445069 TGATTTTTCTTGGACCAGAAGACA 58.555 37.500 0.00 0.00 34.22 3.41
2627 2941 5.299279 TGATTTTTCTTGGACCAGAAGACAC 59.701 40.000 0.00 0.00 34.22 3.67
2628 2942 2.930826 TTCTTGGACCAGAAGACACC 57.069 50.000 0.00 0.00 0.00 4.16
2629 2943 2.103153 TCTTGGACCAGAAGACACCT 57.897 50.000 0.00 0.00 0.00 4.00
2630 2944 3.254093 TCTTGGACCAGAAGACACCTA 57.746 47.619 0.00 0.00 0.00 3.08
2631 2945 3.791320 TCTTGGACCAGAAGACACCTAT 58.209 45.455 0.00 0.00 0.00 2.57
2632 2946 4.942944 TCTTGGACCAGAAGACACCTATA 58.057 43.478 0.00 0.00 0.00 1.31
2633 2947 5.338632 TCTTGGACCAGAAGACACCTATAA 58.661 41.667 0.00 0.00 0.00 0.98
2634 2948 5.422331 TCTTGGACCAGAAGACACCTATAAG 59.578 44.000 0.00 0.00 0.00 1.73
2635 2949 4.942944 TGGACCAGAAGACACCTATAAGA 58.057 43.478 0.00 0.00 0.00 2.10
2636 2950 4.710375 TGGACCAGAAGACACCTATAAGAC 59.290 45.833 0.00 0.00 0.00 3.01
2637 2951 4.957327 GGACCAGAAGACACCTATAAGACT 59.043 45.833 0.00 0.00 0.00 3.24
2638 2952 5.422650 GGACCAGAAGACACCTATAAGACTT 59.577 44.000 0.00 0.00 0.00 3.01
2639 2953 6.287589 ACCAGAAGACACCTATAAGACTTG 57.712 41.667 0.00 0.00 0.00 3.16
2640 2954 5.187967 ACCAGAAGACACCTATAAGACTTGG 59.812 44.000 0.00 0.00 0.00 3.61
2641 2955 5.422331 CCAGAAGACACCTATAAGACTTGGA 59.578 44.000 0.00 0.00 0.00 3.53
2642 2956 6.406400 CCAGAAGACACCTATAAGACTTGGAG 60.406 46.154 0.00 0.00 0.00 3.86
2643 2957 6.378564 CAGAAGACACCTATAAGACTTGGAGA 59.621 42.308 0.00 0.00 0.00 3.71
2644 2958 6.605594 AGAAGACACCTATAAGACTTGGAGAG 59.394 42.308 0.00 0.00 0.00 3.20
2645 2959 5.205056 AGACACCTATAAGACTTGGAGAGG 58.795 45.833 0.00 0.00 0.00 3.69
2646 2960 5.044030 AGACACCTATAAGACTTGGAGAGGA 60.044 44.000 5.79 0.00 0.00 3.71
2647 2961 5.205056 ACACCTATAAGACTTGGAGAGGAG 58.795 45.833 5.79 1.22 0.00 3.69
2648 2962 4.586841 CACCTATAAGACTTGGAGAGGAGG 59.413 50.000 5.79 1.53 0.00 4.30
2649 2963 3.576550 CCTATAAGACTTGGAGAGGAGGC 59.423 52.174 0.00 0.00 0.00 4.70
2650 2964 1.867363 TAAGACTTGGAGAGGAGGCC 58.133 55.000 0.00 0.00 0.00 5.19
2651 2965 0.118144 AAGACTTGGAGAGGAGGCCT 59.882 55.000 3.86 3.86 36.03 5.19
2652 2966 0.617249 AGACTTGGAGAGGAGGCCTG 60.617 60.000 12.00 0.00 31.76 4.85
2653 2967 0.616111 GACTTGGAGAGGAGGCCTGA 60.616 60.000 12.00 0.00 31.76 3.86
2654 2968 0.178891 ACTTGGAGAGGAGGCCTGAA 60.179 55.000 12.00 0.00 31.76 3.02
2655 2969 0.540923 CTTGGAGAGGAGGCCTGAAG 59.459 60.000 12.00 0.00 31.76 3.02
2656 2970 0.117140 TTGGAGAGGAGGCCTGAAGA 59.883 55.000 12.00 0.00 31.76 2.87
2657 2971 0.341258 TGGAGAGGAGGCCTGAAGAT 59.659 55.000 12.00 0.00 31.76 2.40
2658 2972 1.274069 TGGAGAGGAGGCCTGAAGATT 60.274 52.381 12.00 0.00 31.76 2.40
2659 2973 1.416030 GGAGAGGAGGCCTGAAGATTC 59.584 57.143 12.00 0.00 31.76 2.52
2660 2974 1.416030 GAGAGGAGGCCTGAAGATTCC 59.584 57.143 12.00 2.58 31.76 3.01
2661 2975 0.472044 GAGGAGGCCTGAAGATTCCC 59.528 60.000 12.00 1.25 31.76 3.97
2662 2976 1.147153 GGAGGCCTGAAGATTCCCG 59.853 63.158 12.00 0.00 0.00 5.14
2663 2977 1.338136 GGAGGCCTGAAGATTCCCGA 61.338 60.000 12.00 0.00 0.00 5.14
2664 2978 0.105778 GAGGCCTGAAGATTCCCGAG 59.894 60.000 12.00 0.00 0.00 4.63
2665 2979 0.325671 AGGCCTGAAGATTCCCGAGA 60.326 55.000 3.11 0.00 0.00 4.04
2666 2980 0.541863 GGCCTGAAGATTCCCGAGAA 59.458 55.000 0.00 0.00 36.15 2.87
2667 2981 1.065418 GGCCTGAAGATTCCCGAGAAA 60.065 52.381 0.00 0.00 35.09 2.52
2668 2982 2.618045 GGCCTGAAGATTCCCGAGAAAA 60.618 50.000 0.00 0.00 35.09 2.29
2669 2983 2.420372 GCCTGAAGATTCCCGAGAAAAC 59.580 50.000 0.00 0.00 35.09 2.43
2670 2984 3.010420 CCTGAAGATTCCCGAGAAAACC 58.990 50.000 0.00 0.00 35.09 3.27
2671 2985 3.559171 CCTGAAGATTCCCGAGAAAACCA 60.559 47.826 0.00 0.00 35.09 3.67
2672 2986 3.408634 TGAAGATTCCCGAGAAAACCAC 58.591 45.455 0.00 0.00 35.09 4.16
2673 2987 3.181449 TGAAGATTCCCGAGAAAACCACA 60.181 43.478 0.00 0.00 35.09 4.17
2674 2988 3.502123 AGATTCCCGAGAAAACCACAA 57.498 42.857 0.00 0.00 35.09 3.33
2675 2989 3.412386 AGATTCCCGAGAAAACCACAAG 58.588 45.455 0.00 0.00 35.09 3.16
2676 2990 1.314730 TTCCCGAGAAAACCACAAGC 58.685 50.000 0.00 0.00 0.00 4.01
2677 2991 0.536460 TCCCGAGAAAACCACAAGCC 60.536 55.000 0.00 0.00 0.00 4.35
2678 2992 1.574428 CCGAGAAAACCACAAGCCG 59.426 57.895 0.00 0.00 0.00 5.52
2679 2993 1.164041 CCGAGAAAACCACAAGCCGT 61.164 55.000 0.00 0.00 0.00 5.68
2680 2994 1.504359 CGAGAAAACCACAAGCCGTA 58.496 50.000 0.00 0.00 0.00 4.02
2681 2995 1.459592 CGAGAAAACCACAAGCCGTAG 59.540 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.523916 CCTTTCTTGTCATGTATTCCCTACG 59.476 44.000 0.00 0.00 32.61 3.51
53 54 6.884472 TCCTTTCTTGTCATGTATTCCCTA 57.116 37.500 0.00 0.00 0.00 3.53
145 147 6.430451 CCTTTGTATCAAGTTATCCGAATGC 58.570 40.000 0.00 0.00 0.00 3.56
359 385 3.872511 AAAATCATGCCTGCGATTTGA 57.127 38.095 5.98 0.00 40.15 2.69
368 394 9.737844 AAATGTTTACCAAATAAAATCATGCCT 57.262 25.926 0.00 0.00 34.50 4.75
470 499 0.246910 TAGTAAACATGCCCGTGCGA 59.753 50.000 0.00 0.00 41.78 5.10
604 719 5.104235 TCTGGTTGATCACATTCATCCTGAT 60.104 40.000 0.00 0.00 37.96 2.90
609 724 6.748333 TTTCTCTGGTTGATCACATTCATC 57.252 37.500 0.00 0.00 0.00 2.92
861 1009 6.206048 TGCCGTCTCGATCTATATAAACAAGA 59.794 38.462 0.00 0.00 0.00 3.02
896 1104 3.524095 TTGGTGATTGGATTGTGGAGT 57.476 42.857 0.00 0.00 0.00 3.85
912 1120 1.954362 TTTGCTTGCGCTGGTTTGGT 61.954 50.000 9.73 0.00 36.97 3.67
918 1126 2.027897 TTGCTTTGCTTGCGCTGG 59.972 55.556 9.73 1.88 36.97 4.85
921 1129 1.882167 TTGGTTGCTTTGCTTGCGC 60.882 52.632 0.00 0.00 0.00 6.09
922 1130 1.489881 GGTTGGTTGCTTTGCTTGCG 61.490 55.000 0.00 0.00 0.00 4.85
923 1131 0.179076 AGGTTGGTTGCTTTGCTTGC 60.179 50.000 0.00 0.00 0.00 4.01
924 1132 1.856802 GAGGTTGGTTGCTTTGCTTG 58.143 50.000 0.00 0.00 0.00 4.01
925 1133 0.385390 CGAGGTTGGTTGCTTTGCTT 59.615 50.000 0.00 0.00 0.00 3.91
926 1134 0.465460 TCGAGGTTGGTTGCTTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
927 1135 0.383949 TTCGAGGTTGGTTGCTTTGC 59.616 50.000 0.00 0.00 0.00 3.68
928 1136 2.459934 GTTTCGAGGTTGGTTGCTTTG 58.540 47.619 0.00 0.00 0.00 2.77
929 1137 1.407618 GGTTTCGAGGTTGGTTGCTTT 59.592 47.619 0.00 0.00 0.00 3.51
960 1168 2.502947 TGATGGTTGCTCTGCTGTCTAT 59.497 45.455 0.00 0.00 0.00 1.98
962 1170 0.689055 TGATGGTTGCTCTGCTGTCT 59.311 50.000 0.00 0.00 0.00 3.41
973 1181 6.561614 CCTCTTCTTGATTGATTGATGGTTG 58.438 40.000 0.00 0.00 0.00 3.77
1069 1280 3.822192 CGCAGGACCATCGACGGA 61.822 66.667 3.60 0.00 0.00 4.69
1144 1355 1.604378 CAGCTACCCCCTTGTCTGG 59.396 63.158 0.00 0.00 0.00 3.86
1169 1380 1.304282 GCCTCCCCAAGCATCTTGA 59.696 57.895 8.04 0.00 0.00 3.02
1231 1442 1.398958 TTGCCCTTGTTTGGACCTGC 61.399 55.000 0.00 0.00 0.00 4.85
1584 1795 0.689745 TTATCCTGTCCTCCGGGGTG 60.690 60.000 0.00 0.00 40.38 4.61
1642 1853 4.655963 ACATAATCAACAAGAGTGCCAGT 58.344 39.130 0.00 0.00 0.00 4.00
1646 1857 6.000891 TGACAACATAATCAACAAGAGTGC 57.999 37.500 0.00 0.00 0.00 4.40
1648 1859 8.394971 TCAATGACAACATAATCAACAAGAGT 57.605 30.769 0.00 0.00 35.50 3.24
1720 1931 3.187227 CCTCTGAGTTGAATTTCACACCG 59.813 47.826 3.66 0.00 0.00 4.94
1791 2003 9.920133 CACAGATTATATGCTAAGTACACAGAT 57.080 33.333 0.00 0.00 0.00 2.90
1792 2004 8.914011 ACACAGATTATATGCTAAGTACACAGA 58.086 33.333 0.00 0.00 0.00 3.41
1793 2005 9.534565 AACACAGATTATATGCTAAGTACACAG 57.465 33.333 0.00 0.00 0.00 3.66
1826 2046 1.382522 CATGGACGGTTGGAAGGATG 58.617 55.000 0.00 0.00 0.00 3.51
2007 2270 8.367911 TGTTACCAGGCAGAGATACTATAAATG 58.632 37.037 0.00 0.00 0.00 2.32
2012 2277 7.071196 TGAATTGTTACCAGGCAGAGATACTAT 59.929 37.037 0.00 0.00 0.00 2.12
2024 2289 7.891561 TCATTTTAGGTTGAATTGTTACCAGG 58.108 34.615 0.00 0.00 34.32 4.45
2227 2541 4.379499 GGAAAGAAGGCGTGGATAACAAAG 60.379 45.833 0.00 0.00 0.00 2.77
2239 2553 1.068954 GTTTGCAGAGGAAAGAAGGCG 60.069 52.381 0.00 0.00 0.00 5.52
2246 2560 0.889186 GCTCCGGTTTGCAGAGGAAA 60.889 55.000 0.00 0.00 31.67 3.13
2261 2575 4.767255 CAGTGGACGCCCTGCTCC 62.767 72.222 0.00 0.00 0.00 4.70
2306 2620 2.239400 CCAGGAGATGCGGTATACTCA 58.761 52.381 2.25 2.04 0.00 3.41
2316 2630 3.323403 ACTGTATAAGAGCCAGGAGATGC 59.677 47.826 0.00 0.00 0.00 3.91
2344 2658 1.396653 GCAGGAAGCATGCTACCAAT 58.603 50.000 23.00 4.16 44.79 3.16
2356 2670 2.035530 CTTCCTAGCAAGGCAGGAAG 57.964 55.000 22.68 22.68 46.30 3.46
2361 2675 0.620556 CCTTCCTTCCTAGCAAGGCA 59.379 55.000 7.67 0.00 42.63 4.75
2364 2678 3.515901 ACAGTACCTTCCTTCCTAGCAAG 59.484 47.826 0.00 0.00 0.00 4.01
2370 2684 2.822697 GGAGACAGTACCTTCCTTCCT 58.177 52.381 0.00 0.00 0.00 3.36
2371 2685 1.477295 CGGAGACAGTACCTTCCTTCC 59.523 57.143 0.00 0.00 0.00 3.46
2372 2686 2.164017 GACGGAGACAGTACCTTCCTTC 59.836 54.545 0.00 0.00 0.00 3.46
2373 2687 2.169330 GACGGAGACAGTACCTTCCTT 58.831 52.381 0.00 0.00 0.00 3.36
2374 2688 1.836802 GACGGAGACAGTACCTTCCT 58.163 55.000 0.00 0.00 0.00 3.36
2375 2689 0.450983 CGACGGAGACAGTACCTTCC 59.549 60.000 0.00 0.00 0.00 3.46
2376 2690 0.179169 GCGACGGAGACAGTACCTTC 60.179 60.000 0.00 0.00 0.00 3.46
2377 2691 0.892358 TGCGACGGAGACAGTACCTT 60.892 55.000 0.00 0.00 0.00 3.50
2378 2692 0.892358 TTGCGACGGAGACAGTACCT 60.892 55.000 0.00 0.00 0.00 3.08
2379 2693 0.038892 TTTGCGACGGAGACAGTACC 60.039 55.000 0.00 0.00 0.00 3.34
2380 2694 1.774639 TTTTGCGACGGAGACAGTAC 58.225 50.000 0.00 0.00 0.00 2.73
2381 2695 2.736144 ATTTTGCGACGGAGACAGTA 57.264 45.000 0.00 0.00 0.00 2.74
2382 2696 2.736144 TATTTTGCGACGGAGACAGT 57.264 45.000 0.00 0.00 0.00 3.55
2383 2697 2.993899 ACTTATTTTGCGACGGAGACAG 59.006 45.455 0.00 0.00 0.00 3.51
2384 2698 2.734606 CACTTATTTTGCGACGGAGACA 59.265 45.455 0.00 0.00 0.00 3.41
2385 2699 2.735134 ACACTTATTTTGCGACGGAGAC 59.265 45.455 0.00 0.00 0.00 3.36
2386 2700 2.991190 GACACTTATTTTGCGACGGAGA 59.009 45.455 0.00 0.00 0.00 3.71
2387 2701 2.993899 AGACACTTATTTTGCGACGGAG 59.006 45.455 0.00 0.00 0.00 4.63
2388 2702 2.991190 GAGACACTTATTTTGCGACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2389 2703 2.734606 TGAGACACTTATTTTGCGACGG 59.265 45.455 0.00 0.00 0.00 4.79
2390 2704 4.084537 AGTTGAGACACTTATTTTGCGACG 60.085 41.667 0.00 0.00 0.00 5.12
2391 2705 5.344207 AGTTGAGACACTTATTTTGCGAC 57.656 39.130 0.00 0.00 0.00 5.19
2392 2706 6.371809 AAAGTTGAGACACTTATTTTGCGA 57.628 33.333 0.00 0.00 35.87 5.10
2393 2707 9.262472 GTATAAAGTTGAGACACTTATTTTGCG 57.738 33.333 0.00 0.00 35.87 4.85
2403 2717 9.857957 ACTAAAGCTAGTATAAAGTTGAGACAC 57.142 33.333 0.00 0.00 36.56 3.67
2438 2752 9.774742 CCAAAATAAGTGTCTTAAGCTTGATAC 57.225 33.333 9.86 7.37 0.00 2.24
2439 2753 8.956426 CCCAAAATAAGTGTCTTAAGCTTGATA 58.044 33.333 9.86 0.00 0.00 2.15
2440 2754 7.669722 TCCCAAAATAAGTGTCTTAAGCTTGAT 59.330 33.333 9.86 0.00 0.00 2.57
2441 2755 7.001674 TCCCAAAATAAGTGTCTTAAGCTTGA 58.998 34.615 9.86 0.00 0.00 3.02
2442 2756 7.084486 GTCCCAAAATAAGTGTCTTAAGCTTG 58.916 38.462 9.86 0.00 0.00 4.01
2443 2757 6.072673 CGTCCCAAAATAAGTGTCTTAAGCTT 60.073 38.462 3.48 3.48 0.00 3.74
2444 2758 5.411669 CGTCCCAAAATAAGTGTCTTAAGCT 59.588 40.000 0.00 0.00 0.00 3.74
2445 2759 5.391629 CCGTCCCAAAATAAGTGTCTTAAGC 60.392 44.000 0.00 0.00 0.00 3.09
2446 2760 5.935789 TCCGTCCCAAAATAAGTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
2447 2761 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2448 2762 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2449 2763 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2450 2764 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2451 2765 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2452 2766 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2453 2767 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2454 2768 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2455 2769 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2456 2770 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2457 2771 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2458 2772 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2459 2773 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2460 2774 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2461 2775 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2462 2776 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
2463 2777 5.720520 AGATATAAAATACTCCCTCCGTCCC 59.279 44.000 0.00 0.00 0.00 4.46
2464 2778 6.854091 AGATATAAAATACTCCCTCCGTCC 57.146 41.667 0.00 0.00 0.00 4.79
2465 2779 9.557061 AAAAAGATATAAAATACTCCCTCCGTC 57.443 33.333 0.00 0.00 0.00 4.79
2466 2780 9.338622 CAAAAAGATATAAAATACTCCCTCCGT 57.661 33.333 0.00 0.00 0.00 4.69
2467 2781 8.784043 CCAAAAAGATATAAAATACTCCCTCCG 58.216 37.037 0.00 0.00 0.00 4.63
2468 2782 9.078990 CCCAAAAAGATATAAAATACTCCCTCC 57.921 37.037 0.00 0.00 0.00 4.30
2469 2783 9.862149 TCCCAAAAAGATATAAAATACTCCCTC 57.138 33.333 0.00 0.00 0.00 4.30
2470 2784 9.642343 GTCCCAAAAAGATATAAAATACTCCCT 57.358 33.333 0.00 0.00 0.00 4.20
2471 2785 9.642343 AGTCCCAAAAAGATATAAAATACTCCC 57.358 33.333 0.00 0.00 0.00 4.30
2482 2796 9.794719 GCTAATAGGTTAGTCCCAAAAAGATAT 57.205 33.333 0.00 0.00 39.60 1.63
2483 2797 8.774183 TGCTAATAGGTTAGTCCCAAAAAGATA 58.226 33.333 0.00 0.00 39.60 1.98
2484 2798 7.639378 TGCTAATAGGTTAGTCCCAAAAAGAT 58.361 34.615 0.00 0.00 39.60 2.40
2485 2799 7.023171 TGCTAATAGGTTAGTCCCAAAAAGA 57.977 36.000 0.00 0.00 39.60 2.52
2486 2800 7.881775 ATGCTAATAGGTTAGTCCCAAAAAG 57.118 36.000 0.00 0.00 39.60 2.27
2487 2801 8.554011 ACTATGCTAATAGGTTAGTCCCAAAAA 58.446 33.333 0.00 0.00 40.23 1.94
2488 2802 7.990886 CACTATGCTAATAGGTTAGTCCCAAAA 59.009 37.037 0.00 0.00 40.23 2.44
2489 2803 7.506114 CACTATGCTAATAGGTTAGTCCCAAA 58.494 38.462 0.00 0.00 40.23 3.28
2490 2804 6.463897 GCACTATGCTAATAGGTTAGTCCCAA 60.464 42.308 0.00 0.00 40.96 4.12
2491 2805 5.011738 GCACTATGCTAATAGGTTAGTCCCA 59.988 44.000 0.00 0.00 40.96 4.37
2492 2806 5.480205 GCACTATGCTAATAGGTTAGTCCC 58.520 45.833 0.00 0.00 40.96 4.46
2493 2807 5.246429 AGGCACTATGCTAATAGGTTAGTCC 59.754 44.000 0.13 0.00 44.28 3.85
2494 2808 6.347859 AGGCACTATGCTAATAGGTTAGTC 57.652 41.667 0.13 0.00 44.28 2.59
2495 2809 7.011382 ACTAGGCACTATGCTAATAGGTTAGT 58.989 38.462 0.13 0.00 44.28 2.24
2496 2810 7.316640 CACTAGGCACTATGCTAATAGGTTAG 58.683 42.308 0.13 0.00 44.28 2.34
2497 2811 6.295123 GCACTAGGCACTATGCTAATAGGTTA 60.295 42.308 0.13 0.00 44.28 2.85
2498 2812 5.511545 GCACTAGGCACTATGCTAATAGGTT 60.512 44.000 0.13 0.00 44.28 3.50
2499 2813 4.021016 GCACTAGGCACTATGCTAATAGGT 60.021 45.833 0.13 0.00 44.28 3.08
2500 2814 4.499183 GCACTAGGCACTATGCTAATAGG 58.501 47.826 0.13 0.00 44.28 2.57
2501 2815 4.021104 TGGCACTAGGCACTATGCTAATAG 60.021 45.833 0.13 4.24 46.46 1.73
2502 2816 3.901222 TGGCACTAGGCACTATGCTAATA 59.099 43.478 0.13 0.00 46.46 0.98
2503 2817 2.705658 TGGCACTAGGCACTATGCTAAT 59.294 45.455 0.13 0.00 46.46 1.73
2504 2818 2.103094 CTGGCACTAGGCACTATGCTAA 59.897 50.000 0.13 0.00 46.46 3.09
2505 2819 1.688735 CTGGCACTAGGCACTATGCTA 59.311 52.381 0.13 0.00 46.46 3.49
2506 2820 0.467384 CTGGCACTAGGCACTATGCT 59.533 55.000 0.13 0.00 46.46 3.79
2507 2821 0.179000 ACTGGCACTAGGCACTATGC 59.821 55.000 0.00 0.00 46.46 3.14
2508 2822 2.698855 AACTGGCACTAGGCACTATG 57.301 50.000 0.00 0.00 46.46 2.23
2509 2823 2.840651 AGAAACTGGCACTAGGCACTAT 59.159 45.455 0.00 0.00 46.46 2.12
2510 2824 2.028112 CAGAAACTGGCACTAGGCACTA 60.028 50.000 0.00 0.00 46.46 2.74
2511 2825 1.059913 AGAAACTGGCACTAGGCACT 58.940 50.000 0.00 0.00 46.46 4.40
2512 2826 1.160137 CAGAAACTGGCACTAGGCAC 58.840 55.000 0.00 0.00 46.46 5.01
2514 2828 1.897560 AACAGAAACTGGCACTAGGC 58.102 50.000 0.00 0.00 43.74 3.93
2515 2829 4.918810 AAAAACAGAAACTGGCACTAGG 57.081 40.909 0.00 0.00 35.51 3.02
2533 2847 8.919145 TCTGTAGAAGCCAAAAATAAGGAAAAA 58.081 29.630 0.00 0.00 0.00 1.94
2534 2848 8.472007 TCTGTAGAAGCCAAAAATAAGGAAAA 57.528 30.769 0.00 0.00 0.00 2.29
2535 2849 8.472007 TTCTGTAGAAGCCAAAAATAAGGAAA 57.528 30.769 0.00 0.00 0.00 3.13
2536 2850 8.472007 TTTCTGTAGAAGCCAAAAATAAGGAA 57.528 30.769 0.00 0.00 35.21 3.36
2537 2851 8.472007 TTTTCTGTAGAAGCCAAAAATAAGGA 57.528 30.769 0.00 0.00 35.21 3.36
2538 2852 8.360390 ACTTTTCTGTAGAAGCCAAAAATAAGG 58.640 33.333 0.00 0.00 35.21 2.69
2544 2858 9.744468 GAAATTACTTTTCTGTAGAAGCCAAAA 57.256 29.630 0.00 0.00 40.54 2.44
2545 2859 8.908903 TGAAATTACTTTTCTGTAGAAGCCAAA 58.091 29.630 0.00 0.00 43.50 3.28
2546 2860 8.458573 TGAAATTACTTTTCTGTAGAAGCCAA 57.541 30.769 0.00 0.00 43.50 4.52
2547 2861 8.458573 TTGAAATTACTTTTCTGTAGAAGCCA 57.541 30.769 0.00 0.00 43.50 4.75
2548 2862 9.181805 GTTTGAAATTACTTTTCTGTAGAAGCC 57.818 33.333 0.00 0.00 43.50 4.35
2549 2863 8.892905 CGTTTGAAATTACTTTTCTGTAGAAGC 58.107 33.333 0.00 0.00 43.50 3.86
2550 2864 9.382244 CCGTTTGAAATTACTTTTCTGTAGAAG 57.618 33.333 0.00 0.00 43.50 2.85
2551 2865 9.111613 TCCGTTTGAAATTACTTTTCTGTAGAA 57.888 29.630 0.42 0.00 43.50 2.10
2552 2866 8.665643 TCCGTTTGAAATTACTTTTCTGTAGA 57.334 30.769 0.42 0.00 43.50 2.59
2553 2867 8.557029 ACTCCGTTTGAAATTACTTTTCTGTAG 58.443 33.333 0.42 0.00 43.50 2.74
2554 2868 8.441312 ACTCCGTTTGAAATTACTTTTCTGTA 57.559 30.769 0.42 0.00 43.50 2.74
2555 2869 7.329588 ACTCCGTTTGAAATTACTTTTCTGT 57.670 32.000 0.42 0.00 43.50 3.41
2556 2870 6.856426 GGACTCCGTTTGAAATTACTTTTCTG 59.144 38.462 0.42 0.00 43.50 3.02
2557 2871 6.544564 TGGACTCCGTTTGAAATTACTTTTCT 59.455 34.615 0.42 0.00 43.50 2.52
2558 2872 6.731164 TGGACTCCGTTTGAAATTACTTTTC 58.269 36.000 0.00 0.00 43.42 2.29
2559 2873 6.702716 TGGACTCCGTTTGAAATTACTTTT 57.297 33.333 0.00 0.00 0.00 2.27
2560 2874 6.702716 TTGGACTCCGTTTGAAATTACTTT 57.297 33.333 0.00 0.00 0.00 2.66
2561 2875 6.702716 TTTGGACTCCGTTTGAAATTACTT 57.297 33.333 0.00 0.00 0.00 2.24
2562 2876 6.238925 CCTTTTGGACTCCGTTTGAAATTACT 60.239 38.462 0.00 0.00 44.07 2.24
2563 2877 5.918576 CCTTTTGGACTCCGTTTGAAATTAC 59.081 40.000 0.00 0.00 44.07 1.89
2564 2878 5.828859 TCCTTTTGGACTCCGTTTGAAATTA 59.171 36.000 0.00 0.00 45.19 1.40
2565 2879 4.647399 TCCTTTTGGACTCCGTTTGAAATT 59.353 37.500 0.00 0.00 45.19 1.82
2566 2880 4.211920 TCCTTTTGGACTCCGTTTGAAAT 58.788 39.130 0.00 0.00 45.19 2.17
2567 2881 3.622630 TCCTTTTGGACTCCGTTTGAAA 58.377 40.909 0.00 0.00 45.19 2.69
2568 2882 3.284793 TCCTTTTGGACTCCGTTTGAA 57.715 42.857 0.00 0.00 45.19 2.69
2580 2894 9.855021 ATCATCGTAAAGTTTTATTCCTTTTGG 57.145 29.630 0.00 0.00 42.21 3.28
2591 2905 9.244799 GTCCAAGAAAAATCATCGTAAAGTTTT 57.755 29.630 0.00 0.00 0.00 2.43
2592 2906 7.865889 GGTCCAAGAAAAATCATCGTAAAGTTT 59.134 33.333 0.00 0.00 0.00 2.66
2593 2907 7.013846 TGGTCCAAGAAAAATCATCGTAAAGTT 59.986 33.333 0.00 0.00 0.00 2.66
2594 2908 6.488683 TGGTCCAAGAAAAATCATCGTAAAGT 59.511 34.615 0.00 0.00 0.00 2.66
2595 2909 6.908825 TGGTCCAAGAAAAATCATCGTAAAG 58.091 36.000 0.00 0.00 0.00 1.85
2596 2910 6.712998 TCTGGTCCAAGAAAAATCATCGTAAA 59.287 34.615 0.00 0.00 0.00 2.01
2597 2911 6.234920 TCTGGTCCAAGAAAAATCATCGTAA 58.765 36.000 0.00 0.00 0.00 3.18
2598 2912 5.800296 TCTGGTCCAAGAAAAATCATCGTA 58.200 37.500 0.00 0.00 0.00 3.43
2599 2913 4.651778 TCTGGTCCAAGAAAAATCATCGT 58.348 39.130 0.00 0.00 0.00 3.73
2600 2914 5.412594 TCTTCTGGTCCAAGAAAAATCATCG 59.587 40.000 0.00 0.00 35.79 3.84
2601 2915 6.207417 TGTCTTCTGGTCCAAGAAAAATCATC 59.793 38.462 0.00 0.00 35.79 2.92
2602 2916 6.015940 GTGTCTTCTGGTCCAAGAAAAATCAT 60.016 38.462 0.00 0.00 35.79 2.45
2603 2917 5.299279 GTGTCTTCTGGTCCAAGAAAAATCA 59.701 40.000 0.00 0.00 35.79 2.57
2604 2918 5.278512 GGTGTCTTCTGGTCCAAGAAAAATC 60.279 44.000 0.00 0.00 35.79 2.17
2605 2919 4.584743 GGTGTCTTCTGGTCCAAGAAAAAT 59.415 41.667 0.00 0.00 35.79 1.82
2606 2920 3.951680 GGTGTCTTCTGGTCCAAGAAAAA 59.048 43.478 0.00 0.00 35.79 1.94
2607 2921 3.202151 AGGTGTCTTCTGGTCCAAGAAAA 59.798 43.478 0.00 0.00 35.79 2.29
2608 2922 2.777692 AGGTGTCTTCTGGTCCAAGAAA 59.222 45.455 0.00 0.00 35.79 2.52
2609 2923 2.408565 AGGTGTCTTCTGGTCCAAGAA 58.591 47.619 0.00 0.00 34.97 2.52
2610 2924 2.103153 AGGTGTCTTCTGGTCCAAGA 57.897 50.000 0.00 0.00 0.00 3.02
2611 2925 5.422331 TCTTATAGGTGTCTTCTGGTCCAAG 59.578 44.000 0.00 0.00 0.00 3.61
2612 2926 5.187186 GTCTTATAGGTGTCTTCTGGTCCAA 59.813 44.000 0.00 0.00 0.00 3.53
2613 2927 4.710375 GTCTTATAGGTGTCTTCTGGTCCA 59.290 45.833 0.00 0.00 0.00 4.02
2614 2928 4.957327 AGTCTTATAGGTGTCTTCTGGTCC 59.043 45.833 0.00 0.00 0.00 4.46
2615 2929 6.334202 CAAGTCTTATAGGTGTCTTCTGGTC 58.666 44.000 0.00 0.00 0.00 4.02
2616 2930 5.187967 CCAAGTCTTATAGGTGTCTTCTGGT 59.812 44.000 0.00 0.00 0.00 4.00
2617 2931 5.422331 TCCAAGTCTTATAGGTGTCTTCTGG 59.578 44.000 0.00 0.00 0.00 3.86
2618 2932 6.378564 TCTCCAAGTCTTATAGGTGTCTTCTG 59.621 42.308 0.00 0.00 0.00 3.02
2619 2933 6.494952 TCTCCAAGTCTTATAGGTGTCTTCT 58.505 40.000 0.00 0.00 0.00 2.85
2620 2934 6.183360 CCTCTCCAAGTCTTATAGGTGTCTTC 60.183 46.154 0.00 0.00 0.00 2.87
2621 2935 5.659079 CCTCTCCAAGTCTTATAGGTGTCTT 59.341 44.000 0.00 0.00 0.00 3.01
2622 2936 5.044030 TCCTCTCCAAGTCTTATAGGTGTCT 60.044 44.000 0.00 0.00 0.00 3.41
2623 2937 5.202004 TCCTCTCCAAGTCTTATAGGTGTC 58.798 45.833 0.00 0.00 0.00 3.67
2624 2938 5.205056 CTCCTCTCCAAGTCTTATAGGTGT 58.795 45.833 0.00 0.00 0.00 4.16
2625 2939 4.586841 CCTCCTCTCCAAGTCTTATAGGTG 59.413 50.000 0.00 0.00 0.00 4.00
2626 2940 4.810345 CCTCCTCTCCAAGTCTTATAGGT 58.190 47.826 0.00 0.00 0.00 3.08
2627 2941 3.576550 GCCTCCTCTCCAAGTCTTATAGG 59.423 52.174 0.00 0.00 0.00 2.57
2628 2942 3.576550 GGCCTCCTCTCCAAGTCTTATAG 59.423 52.174 0.00 0.00 0.00 1.31
2629 2943 3.207777 AGGCCTCCTCTCCAAGTCTTATA 59.792 47.826 0.00 0.00 0.00 0.98
2630 2944 2.022527 AGGCCTCCTCTCCAAGTCTTAT 60.023 50.000 0.00 0.00 0.00 1.73
2631 2945 1.362932 AGGCCTCCTCTCCAAGTCTTA 59.637 52.381 0.00 0.00 0.00 2.10
2632 2946 0.118144 AGGCCTCCTCTCCAAGTCTT 59.882 55.000 0.00 0.00 0.00 3.01
2633 2947 0.617249 CAGGCCTCCTCTCCAAGTCT 60.617 60.000 0.00 0.00 0.00 3.24
2634 2948 0.616111 TCAGGCCTCCTCTCCAAGTC 60.616 60.000 0.00 0.00 0.00 3.01
2635 2949 0.178891 TTCAGGCCTCCTCTCCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
2636 2950 0.540923 CTTCAGGCCTCCTCTCCAAG 59.459 60.000 0.00 0.00 0.00 3.61
2637 2951 0.117140 TCTTCAGGCCTCCTCTCCAA 59.883 55.000 0.00 0.00 0.00 3.53
2638 2952 0.341258 ATCTTCAGGCCTCCTCTCCA 59.659 55.000 0.00 0.00 0.00 3.86
2639 2953 1.416030 GAATCTTCAGGCCTCCTCTCC 59.584 57.143 0.00 0.00 0.00 3.71
2640 2954 1.416030 GGAATCTTCAGGCCTCCTCTC 59.584 57.143 0.00 0.00 0.00 3.20
2641 2955 1.506025 GGAATCTTCAGGCCTCCTCT 58.494 55.000 0.00 0.00 0.00 3.69
2642 2956 0.472044 GGGAATCTTCAGGCCTCCTC 59.528 60.000 0.00 0.00 0.00 3.71
2643 2957 1.341156 CGGGAATCTTCAGGCCTCCT 61.341 60.000 0.00 0.00 0.00 3.69
2644 2958 1.147153 CGGGAATCTTCAGGCCTCC 59.853 63.158 0.00 0.00 0.00 4.30
2645 2959 0.105778 CTCGGGAATCTTCAGGCCTC 59.894 60.000 0.00 0.00 0.00 4.70
2646 2960 0.325671 TCTCGGGAATCTTCAGGCCT 60.326 55.000 0.00 0.00 0.00 5.19
2647 2961 0.541863 TTCTCGGGAATCTTCAGGCC 59.458 55.000 0.00 0.00 0.00 5.19
2648 2962 2.403252 TTTCTCGGGAATCTTCAGGC 57.597 50.000 0.00 0.00 0.00 4.85
2649 2963 3.010420 GGTTTTCTCGGGAATCTTCAGG 58.990 50.000 0.00 0.00 0.00 3.86
2650 2964 3.437049 GTGGTTTTCTCGGGAATCTTCAG 59.563 47.826 0.00 0.00 0.00 3.02
2651 2965 3.181449 TGTGGTTTTCTCGGGAATCTTCA 60.181 43.478 0.00 0.00 0.00 3.02
2652 2966 3.408634 TGTGGTTTTCTCGGGAATCTTC 58.591 45.455 0.00 0.00 0.00 2.87
2653 2967 3.502123 TGTGGTTTTCTCGGGAATCTT 57.498 42.857 0.00 0.00 0.00 2.40
2654 2968 3.412386 CTTGTGGTTTTCTCGGGAATCT 58.588 45.455 0.00 0.00 0.00 2.40
2655 2969 2.095212 GCTTGTGGTTTTCTCGGGAATC 60.095 50.000 0.00 0.00 0.00 2.52
2656 2970 1.886542 GCTTGTGGTTTTCTCGGGAAT 59.113 47.619 0.00 0.00 0.00 3.01
2657 2971 1.314730 GCTTGTGGTTTTCTCGGGAA 58.685 50.000 0.00 0.00 0.00 3.97
2658 2972 0.536460 GGCTTGTGGTTTTCTCGGGA 60.536 55.000 0.00 0.00 0.00 5.14
2659 2973 1.852067 CGGCTTGTGGTTTTCTCGGG 61.852 60.000 0.00 0.00 0.00 5.14
2660 2974 1.164041 ACGGCTTGTGGTTTTCTCGG 61.164 55.000 0.00 0.00 0.00 4.63
2661 2975 1.459592 CTACGGCTTGTGGTTTTCTCG 59.540 52.381 0.00 0.00 0.00 4.04
2662 2976 1.804748 CCTACGGCTTGTGGTTTTCTC 59.195 52.381 0.00 0.00 0.00 2.87
2663 2977 1.544759 CCCTACGGCTTGTGGTTTTCT 60.545 52.381 0.00 0.00 0.00 2.52
2664 2978 0.879090 CCCTACGGCTTGTGGTTTTC 59.121 55.000 0.00 0.00 0.00 2.29
2665 2979 0.538746 CCCCTACGGCTTGTGGTTTT 60.539 55.000 0.00 0.00 0.00 2.43
2666 2980 1.074248 CCCCTACGGCTTGTGGTTT 59.926 57.895 0.00 0.00 0.00 3.27
2667 2981 2.754375 CCCCTACGGCTTGTGGTT 59.246 61.111 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.