Multiple sequence alignment - TraesCS4A01G392800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G392800 chr4A 100.000 5041 0 0 1 5041 668444734 668439694 0.000000e+00 9310.0
1 TraesCS4A01G392800 chr4A 86.285 977 93 13 4064 5034 677271239 677272180 0.000000e+00 1024.0
2 TraesCS4A01G392800 chr4A 90.281 391 28 7 142 527 715877796 715877411 2.090000e-138 503.0
3 TraesCS4A01G392800 chr4A 71.883 754 167 29 2692 3417 707675137 707675873 5.190000e-40 176.0
4 TraesCS4A01G392800 chr4A 71.520 783 183 27 2662 3417 707702563 707703332 1.870000e-39 174.0
5 TraesCS4A01G392800 chr7D 92.440 1574 68 20 2506 4039 53966927 53968489 0.000000e+00 2200.0
6 TraesCS4A01G392800 chr7D 91.001 989 52 13 791 1753 53963445 53964422 0.000000e+00 1299.0
7 TraesCS4A01G392800 chr7D 91.348 497 32 6 1753 2241 53964458 53964951 0.000000e+00 669.0
8 TraesCS4A01G392800 chr7D 97.333 150 4 0 528 677 53963297 53963446 6.480000e-64 255.0
9 TraesCS4A01G392800 chr7D 93.243 148 4 2 1 142 53963158 53963305 3.950000e-51 213.0
10 TraesCS4A01G392800 chr7D 96.875 32 1 0 4035 4066 374242587 374242618 3.000000e-03 54.7
11 TraesCS4A01G392800 chr7A 86.452 1550 148 19 2541 4039 57545366 57546904 0.000000e+00 1642.0
12 TraesCS4A01G392800 chr7A 87.805 205 25 0 1865 2069 57545066 57545270 1.810000e-59 241.0
13 TraesCS4A01G392800 chr3D 89.495 990 88 7 4066 5041 945080 946067 0.000000e+00 1238.0
14 TraesCS4A01G392800 chr3D 84.956 113 15 2 2242 2353 294047814 294047703 4.120000e-21 113.0
15 TraesCS4A01G392800 chr3D 100.000 29 0 0 4038 4066 402383356 402383328 3.000000e-03 54.7
16 TraesCS4A01G392800 chr6B 88.212 1001 95 7 4063 5041 548639857 548640856 0.000000e+00 1173.0
17 TraesCS4A01G392800 chr6B 89.203 954 80 10 4064 5000 699805589 699806536 0.000000e+00 1170.0
18 TraesCS4A01G392800 chr6B 89.099 954 81 13 4064 5000 699885101 699886048 0.000000e+00 1164.0
19 TraesCS4A01G392800 chr6B 88.679 954 85 12 4064 5000 699845492 699846439 0.000000e+00 1142.0
20 TraesCS4A01G392800 chr6B 88.120 968 95 7 4092 5041 347552348 347553313 0.000000e+00 1133.0
21 TraesCS4A01G392800 chr6B 87.001 977 97 9 4070 5041 213396750 213397701 0.000000e+00 1074.0
22 TraesCS4A01G392800 chr1B 86.251 1011 95 16 4065 5041 115447971 115448971 0.000000e+00 1057.0
23 TraesCS4A01G392800 chr1B 84.653 1023 98 18 4065 5041 256200487 256199478 0.000000e+00 965.0
24 TraesCS4A01G392800 chr1B 89.120 432 16 20 136 545 656092683 656093105 4.500000e-140 508.0
25 TraesCS4A01G392800 chr1B 90.074 403 22 9 142 527 652299321 652299722 1.620000e-139 507.0
26 TraesCS4A01G392800 chr1B 94.215 121 5 2 673 792 439402816 439402935 3.100000e-42 183.0
27 TraesCS4A01G392800 chr2B 85.469 991 88 23 4070 5041 21533908 21532955 0.000000e+00 981.0
28 TraesCS4A01G392800 chr2B 89.931 437 16 14 136 548 779132379 779131947 5.740000e-149 538.0
29 TraesCS4A01G392800 chr2B 90.816 392 25 9 145 527 66552976 66552587 9.680000e-142 514.0
30 TraesCS4A01G392800 chr2B 75.197 887 185 27 2673 3539 4014897 4015768 2.200000e-103 387.0
31 TraesCS4A01G392800 chr2B 75.000 888 185 29 2673 3539 4284396 4285267 4.760000e-100 375.0
32 TraesCS4A01G392800 chr2B 75.028 885 184 28 2673 3536 4377791 4378659 4.760000e-100 375.0
33 TraesCS4A01G392800 chr2B 75.028 885 184 29 2673 3536 4425632 4426500 4.760000e-100 375.0
34 TraesCS4A01G392800 chr2B 72.523 979 196 51 2606 3536 38841883 38842836 3.010000e-62 250.0
35 TraesCS4A01G392800 chr2B 93.600 125 8 0 668 792 676190150 676190274 2.400000e-43 187.0
36 TraesCS4A01G392800 chr2B 100.000 31 0 0 4036 4066 461649802 461649832 1.960000e-04 58.4
37 TraesCS4A01G392800 chr2B 100.000 29 0 0 4038 4066 180991144 180991172 3.000000e-03 54.7
38 TraesCS4A01G392800 chr3B 84.486 1012 117 15 4066 5041 715071148 715070141 0.000000e+00 963.0
39 TraesCS4A01G392800 chr3B 87.383 428 21 10 137 534 5168011 5168435 1.280000e-125 460.0
40 TraesCS4A01G392800 chr3B 92.683 123 9 0 672 794 30508511 30508633 1.440000e-40 178.0
41 TraesCS4A01G392800 chr3B 90.977 133 11 1 668 800 55781173 55781042 1.440000e-40 178.0
42 TraesCS4A01G392800 chr7B 91.414 396 22 10 139 527 103562735 103563125 2.670000e-147 532.0
43 TraesCS4A01G392800 chr7B 90.955 398 17 7 143 527 383873511 383873120 7.480000e-143 518.0
44 TraesCS4A01G392800 chr7B 86.620 426 25 9 130 529 22833000 22833419 4.630000e-120 442.0
45 TraesCS4A01G392800 chr7B 90.840 131 10 2 664 794 263793557 263793429 1.870000e-39 174.0
46 TraesCS4A01G392800 chr5B 88.586 403 35 7 138 535 544809559 544809955 3.530000e-131 479.0
47 TraesCS4A01G392800 chr4D 88.413 397 32 10 143 532 452805840 452806229 2.750000e-127 466.0
48 TraesCS4A01G392800 chr2D 73.909 1008 234 25 2546 3536 7834683 7835678 1.320000e-100 377.0
49 TraesCS4A01G392800 chr2D 74.306 864 191 26 2706 3553 7645962 7645114 2.250000e-88 337.0
50 TraesCS4A01G392800 chr2D 73.290 921 177 54 2636 3515 19245387 19244495 1.790000e-69 274.0
51 TraesCS4A01G392800 chr2D 93.548 124 8 0 675 798 26201357 26201234 8.620000e-43 185.0
52 TraesCS4A01G392800 chr2A 70.719 987 253 28 2540 3509 5911237 5912204 6.660000e-44 189.0
53 TraesCS4A01G392800 chr2A 86.585 82 11 0 2282 2363 685632263 685632344 1.930000e-14 91.6
54 TraesCS4A01G392800 chr4B 94.262 122 7 0 673 794 506580539 506580660 2.400000e-43 187.0
55 TraesCS4A01G392800 chr4B 82.857 70 7 4 2282 2349 638421174 638421240 1.960000e-04 58.4
56 TraesCS4A01G392800 chr6D 92.742 124 8 1 676 798 471326716 471326593 1.440000e-40 178.0
57 TraesCS4A01G392800 chr6D 89.051 137 15 0 676 812 430998580 430998444 2.410000e-38 171.0
58 TraesCS4A01G392800 chr5A 97.222 36 1 0 4038 4073 94007462 94007497 1.520000e-05 62.1
59 TraesCS4A01G392800 chr3A 97.222 36 1 0 4038 4073 205440006 205440041 1.520000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G392800 chr4A 668439694 668444734 5040 True 9310.0 9310 100.0000 1 5041 1 chr4A.!!$R1 5040
1 TraesCS4A01G392800 chr4A 677271239 677272180 941 False 1024.0 1024 86.2850 4064 5034 1 chr4A.!!$F1 970
2 TraesCS4A01G392800 chr7D 53963158 53968489 5331 False 927.2 2200 93.0730 1 4039 5 chr7D.!!$F2 4038
3 TraesCS4A01G392800 chr7A 57545066 57546904 1838 False 941.5 1642 87.1285 1865 4039 2 chr7A.!!$F1 2174
4 TraesCS4A01G392800 chr3D 945080 946067 987 False 1238.0 1238 89.4950 4066 5041 1 chr3D.!!$F1 975
5 TraesCS4A01G392800 chr6B 548639857 548640856 999 False 1173.0 1173 88.2120 4063 5041 1 chr6B.!!$F3 978
6 TraesCS4A01G392800 chr6B 699805589 699806536 947 False 1170.0 1170 89.2030 4064 5000 1 chr6B.!!$F4 936
7 TraesCS4A01G392800 chr6B 699885101 699886048 947 False 1164.0 1164 89.0990 4064 5000 1 chr6B.!!$F6 936
8 TraesCS4A01G392800 chr6B 699845492 699846439 947 False 1142.0 1142 88.6790 4064 5000 1 chr6B.!!$F5 936
9 TraesCS4A01G392800 chr6B 347552348 347553313 965 False 1133.0 1133 88.1200 4092 5041 1 chr6B.!!$F2 949
10 TraesCS4A01G392800 chr6B 213396750 213397701 951 False 1074.0 1074 87.0010 4070 5041 1 chr6B.!!$F1 971
11 TraesCS4A01G392800 chr1B 115447971 115448971 1000 False 1057.0 1057 86.2510 4065 5041 1 chr1B.!!$F1 976
12 TraesCS4A01G392800 chr1B 256199478 256200487 1009 True 965.0 965 84.6530 4065 5041 1 chr1B.!!$R1 976
13 TraesCS4A01G392800 chr2B 21532955 21533908 953 True 981.0 981 85.4690 4070 5041 1 chr2B.!!$R1 971
14 TraesCS4A01G392800 chr2B 4014897 4015768 871 False 387.0 387 75.1970 2673 3539 1 chr2B.!!$F1 866
15 TraesCS4A01G392800 chr2B 4284396 4285267 871 False 375.0 375 75.0000 2673 3539 1 chr2B.!!$F2 866
16 TraesCS4A01G392800 chr2B 4377791 4378659 868 False 375.0 375 75.0280 2673 3536 1 chr2B.!!$F3 863
17 TraesCS4A01G392800 chr2B 4425632 4426500 868 False 375.0 375 75.0280 2673 3536 1 chr2B.!!$F4 863
18 TraesCS4A01G392800 chr2B 38841883 38842836 953 False 250.0 250 72.5230 2606 3536 1 chr2B.!!$F5 930
19 TraesCS4A01G392800 chr3B 715070141 715071148 1007 True 963.0 963 84.4860 4066 5041 1 chr3B.!!$R2 975
20 TraesCS4A01G392800 chr2D 7834683 7835678 995 False 377.0 377 73.9090 2546 3536 1 chr2D.!!$F1 990
21 TraesCS4A01G392800 chr2D 7645114 7645962 848 True 337.0 337 74.3060 2706 3553 1 chr2D.!!$R1 847
22 TraesCS4A01G392800 chr2D 19244495 19245387 892 True 274.0 274 73.2900 2636 3515 1 chr2D.!!$R2 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 522 0.036732 AAATGAGCTCGGGTGCAGAA 59.963 50.000 9.64 0.0 34.99 3.02 F
516 523 0.036732 AATGAGCTCGGGTGCAGAAA 59.963 50.000 9.64 0.0 34.99 2.52 F
527 534 0.249911 GTGCAGAAACTCCACGTCCT 60.250 55.000 0.00 0.0 0.00 3.85 F
1836 1908 0.321653 CCTGGTCAGGTACAAGTGGC 60.322 60.000 8.78 0.0 43.61 5.01 F
2078 2150 1.002011 GTGCCAACTTCTCCCTCCC 60.002 63.158 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1505 0.108186 TCTATTGCTGACAGTGGCCG 60.108 55.000 3.99 0.0 0.00 6.13 R
1836 1908 1.153958 TGTCGATGCGAGCAGTCAG 60.154 57.895 3.58 0.0 36.23 3.51 R
2123 2195 1.200519 TACTTCCATTACCGGCAGCT 58.799 50.000 0.00 0.0 0.00 4.24 R
2813 4650 2.197324 GTTGTGGTGGAGGCCCAA 59.803 61.111 0.00 0.0 45.59 4.12 R
4059 5978 0.030705 TGGAGATGCTCTAAGGCCCT 60.031 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.037493 ACGGATAGCTGCAACGGATA 58.963 50.000 1.02 0.00 0.00 2.59
71 72 7.114388 GCAACGGATAAAGGAACAAAAGTTAAG 59.886 37.037 0.00 0.00 0.00 1.85
97 104 0.814457 TGCACCCGTCAATAATTGGC 59.186 50.000 0.00 0.00 0.00 4.52
109 116 2.710096 TAATTGGCAGGCAGACTACC 57.290 50.000 0.00 0.00 32.79 3.18
110 117 0.698238 AATTGGCAGGCAGACTACCA 59.302 50.000 0.00 0.00 40.98 3.25
142 149 8.871125 TGGTCTCTTTCAAAGGATATATACTCC 58.129 37.037 0.00 0.00 0.00 3.85
143 150 8.030106 GGTCTCTTTCAAAGGATATATACTCCG 58.970 40.741 0.00 0.00 37.88 4.63
144 151 8.794553 GTCTCTTTCAAAGGATATATACTCCGA 58.205 37.037 0.00 0.00 37.88 4.55
145 152 9.363401 TCTCTTTCAAAGGATATATACTCCGAA 57.637 33.333 0.00 1.70 37.88 4.30
146 153 9.982651 CTCTTTCAAAGGATATATACTCCGAAA 57.017 33.333 15.77 15.77 37.88 3.46
147 154 9.982651 TCTTTCAAAGGATATATACTCCGAAAG 57.017 33.333 26.05 26.05 38.16 2.62
148 155 9.765795 CTTTCAAAGGATATATACTCCGAAAGT 57.234 33.333 24.88 0.79 42.33 2.66
149 156 9.542462 TTTCAAAGGATATATACTCCGAAAGTG 57.458 33.333 13.85 0.71 39.11 3.16
150 157 7.152645 TCAAAGGATATATACTCCGAAAGTGC 58.847 38.462 0.00 0.00 39.11 4.40
151 158 5.662674 AGGATATATACTCCGAAAGTGCC 57.337 43.478 0.00 0.00 39.11 5.01
152 159 5.334421 AGGATATATACTCCGAAAGTGCCT 58.666 41.667 0.00 0.00 39.11 4.75
153 160 5.780793 AGGATATATACTCCGAAAGTGCCTT 59.219 40.000 0.00 0.00 39.11 4.35
154 161 6.270231 AGGATATATACTCCGAAAGTGCCTTT 59.730 38.462 0.00 0.46 39.11 3.11
155 162 6.590677 GGATATATACTCCGAAAGTGCCTTTC 59.409 42.308 14.28 14.28 44.29 2.62
156 163 3.983044 ATACTCCGAAAGTGCCTTTCT 57.017 42.857 19.11 8.35 45.19 2.52
157 164 1.884235 ACTCCGAAAGTGCCTTTCTG 58.116 50.000 19.11 14.94 45.19 3.02
158 165 0.519077 CTCCGAAAGTGCCTTTCTGC 59.481 55.000 19.11 0.00 45.19 4.26
159 166 0.108585 TCCGAAAGTGCCTTTCTGCT 59.891 50.000 19.11 0.00 45.19 4.24
160 167 0.519077 CCGAAAGTGCCTTTCTGCTC 59.481 55.000 19.11 0.00 45.19 4.26
161 168 0.519077 CGAAAGTGCCTTTCTGCTCC 59.481 55.000 19.11 1.19 45.19 4.70
162 169 0.884514 GAAAGTGCCTTTCTGCTCCC 59.115 55.000 16.08 0.00 44.33 4.30
163 170 0.890996 AAAGTGCCTTTCTGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
164 171 1.768684 AAGTGCCTTTCTGCTCCCGA 61.769 55.000 0.00 0.00 0.00 5.14
165 172 1.743252 GTGCCTTTCTGCTCCCGAG 60.743 63.158 0.00 0.00 0.00 4.63
186 193 2.416747 CTCATTTGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
187 194 2.414481 CTCATTTGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
188 195 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
189 196 3.006430 TCATTTGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
190 197 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
191 198 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
192 199 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
193 200 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
194 201 4.385825 TGAGCTCGGTGAACAGTAAAATT 58.614 39.130 9.64 0.00 0.00 1.82
195 202 4.213270 TGAGCTCGGTGAACAGTAAAATTG 59.787 41.667 9.64 0.00 0.00 2.32
196 203 4.385825 AGCTCGGTGAACAGTAAAATTGA 58.614 39.130 0.00 0.00 0.00 2.57
197 204 4.819630 AGCTCGGTGAACAGTAAAATTGAA 59.180 37.500 0.00 0.00 0.00 2.69
198 205 5.298276 AGCTCGGTGAACAGTAAAATTGAAA 59.702 36.000 0.00 0.00 0.00 2.69
199 206 5.974751 GCTCGGTGAACAGTAAAATTGAAAA 59.025 36.000 0.00 0.00 0.00 2.29
200 207 6.474102 GCTCGGTGAACAGTAAAATTGAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
244 251 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
245 252 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
246 253 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
247 254 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
248 255 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
249 256 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
250 257 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
251 258 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
252 259 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
253 260 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
254 261 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
255 262 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
256 263 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
257 264 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
258 265 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
259 266 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
260 267 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
261 268 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
262 269 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
263 270 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
264 271 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
265 272 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
266 273 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
267 274 6.572519 AGTTCTAAGTGCTTGCAAAAATTCA 58.427 32.000 0.00 0.00 0.00 2.57
268 275 7.212274 AGTTCTAAGTGCTTGCAAAAATTCAT 58.788 30.769 0.00 0.00 0.00 2.57
269 276 7.712205 AGTTCTAAGTGCTTGCAAAAATTCATT 59.288 29.630 0.00 0.00 0.00 2.57
270 277 8.977505 GTTCTAAGTGCTTGCAAAAATTCATTA 58.022 29.630 0.00 0.00 0.00 1.90
271 278 9.709495 TTCTAAGTGCTTGCAAAAATTCATTAT 57.291 25.926 0.00 0.00 0.00 1.28
272 279 9.142515 TCTAAGTGCTTGCAAAAATTCATTATG 57.857 29.630 0.00 0.00 0.00 1.90
273 280 7.966246 AAGTGCTTGCAAAAATTCATTATGA 57.034 28.000 0.00 0.00 0.00 2.15
274 281 7.966246 AGTGCTTGCAAAAATTCATTATGAA 57.034 28.000 10.23 10.23 41.09 2.57
275 282 8.380743 AGTGCTTGCAAAAATTCATTATGAAA 57.619 26.923 11.88 0.00 40.12 2.69
276 283 9.005777 AGTGCTTGCAAAAATTCATTATGAAAT 57.994 25.926 11.88 0.22 40.12 2.17
277 284 9.269415 GTGCTTGCAAAAATTCATTATGAAATC 57.731 29.630 11.88 0.00 40.12 2.17
278 285 9.000486 TGCTTGCAAAAATTCATTATGAAATCA 58.000 25.926 11.88 0.00 40.12 2.57
279 286 9.269415 GCTTGCAAAAATTCATTATGAAATCAC 57.731 29.630 11.88 1.29 40.12 3.06
292 299 9.241317 CATTATGAAATCACATTCTTGTAAGGC 57.759 33.333 0.00 0.00 33.76 4.35
293 300 5.295431 TGAAATCACATTCTTGTAAGGCG 57.705 39.130 0.00 0.00 33.76 5.52
294 301 4.759693 TGAAATCACATTCTTGTAAGGCGT 59.240 37.500 0.00 0.00 33.76 5.68
295 302 4.685169 AATCACATTCTTGTAAGGCGTG 57.315 40.909 0.00 0.00 33.76 5.34
296 303 2.422597 TCACATTCTTGTAAGGCGTGG 58.577 47.619 0.00 0.00 33.76 4.94
297 304 1.135689 CACATTCTTGTAAGGCGTGGC 60.136 52.381 0.00 0.00 33.76 5.01
298 305 1.164411 CATTCTTGTAAGGCGTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
299 306 1.539388 CATTCTTGTAAGGCGTGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
300 307 1.681538 TTCTTGTAAGGCGTGGCAAA 58.318 45.000 0.00 0.00 0.00 3.68
301 308 1.681538 TCTTGTAAGGCGTGGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
302 309 2.025155 TCTTGTAAGGCGTGGCAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
327 334 6.622833 AAAACAAATTCAGGCTCCAAAATG 57.377 33.333 0.00 0.00 0.00 2.32
328 335 3.667360 ACAAATTCAGGCTCCAAAATGC 58.333 40.909 0.00 0.00 0.00 3.56
329 336 3.325716 ACAAATTCAGGCTCCAAAATGCT 59.674 39.130 0.00 0.00 0.00 3.79
330 337 4.202388 ACAAATTCAGGCTCCAAAATGCTT 60.202 37.500 0.00 0.00 0.00 3.91
331 338 4.628963 AATTCAGGCTCCAAAATGCTTT 57.371 36.364 0.00 0.00 0.00 3.51
332 339 4.628963 ATTCAGGCTCCAAAATGCTTTT 57.371 36.364 0.00 0.00 0.00 2.27
350 357 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
351 358 6.919662 TGCTTTTGAAAGTAGCATTTTCAGAG 59.080 34.615 0.45 11.39 43.22 3.35
352 359 6.920210 GCTTTTGAAAGTAGCATTTTCAGAGT 59.080 34.615 5.47 0.00 43.22 3.24
353 360 8.076178 GCTTTTGAAAGTAGCATTTTCAGAGTA 58.924 33.333 5.47 0.00 43.22 2.59
354 361 9.387123 CTTTTGAAAGTAGCATTTTCAGAGTAC 57.613 33.333 9.30 0.00 43.22 2.73
355 362 7.435068 TTGAAAGTAGCATTTTCAGAGTACC 57.565 36.000 9.30 0.00 43.22 3.34
356 363 5.637810 TGAAAGTAGCATTTTCAGAGTACCG 59.362 40.000 6.29 0.00 39.05 4.02
357 364 5.401531 AAGTAGCATTTTCAGAGTACCGA 57.598 39.130 0.00 0.00 0.00 4.69
358 365 5.599999 AGTAGCATTTTCAGAGTACCGAT 57.400 39.130 0.00 0.00 0.00 4.18
359 366 5.978814 AGTAGCATTTTCAGAGTACCGATT 58.021 37.500 0.00 0.00 0.00 3.34
360 367 6.407202 AGTAGCATTTTCAGAGTACCGATTT 58.593 36.000 0.00 0.00 0.00 2.17
361 368 6.879458 AGTAGCATTTTCAGAGTACCGATTTT 59.121 34.615 0.00 0.00 0.00 1.82
362 369 5.942872 AGCATTTTCAGAGTACCGATTTTG 58.057 37.500 0.00 0.00 0.00 2.44
363 370 5.473504 AGCATTTTCAGAGTACCGATTTTGT 59.526 36.000 0.00 0.00 0.00 2.83
364 371 6.016276 AGCATTTTCAGAGTACCGATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
365 372 6.640907 GCATTTTCAGAGTACCGATTTTGTTT 59.359 34.615 0.00 0.00 0.00 2.83
366 373 7.169140 GCATTTTCAGAGTACCGATTTTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
367 374 9.030301 CATTTTCAGAGTACCGATTTTGTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
385 392 3.802948 TTTTTGCCACGCCTTTTAGAA 57.197 38.095 0.00 0.00 0.00 2.10
386 393 3.802948 TTTTGCCACGCCTTTTAGAAA 57.197 38.095 0.00 0.00 0.00 2.52
387 394 4.329462 TTTTGCCACGCCTTTTAGAAAT 57.671 36.364 0.00 0.00 0.00 2.17
388 395 3.296322 TTGCCACGCCTTTTAGAAATG 57.704 42.857 0.00 0.00 0.00 2.32
389 396 2.235016 TGCCACGCCTTTTAGAAATGT 58.765 42.857 0.00 0.00 0.00 2.71
390 397 2.030363 TGCCACGCCTTTTAGAAATGTG 60.030 45.455 0.00 0.00 0.00 3.21
391 398 2.227865 GCCACGCCTTTTAGAAATGTGA 59.772 45.455 0.00 0.00 0.00 3.58
392 399 3.119495 GCCACGCCTTTTAGAAATGTGAT 60.119 43.478 0.00 0.00 0.00 3.06
393 400 4.618227 GCCACGCCTTTTAGAAATGTGATT 60.618 41.667 0.00 0.00 0.00 2.57
394 401 5.469479 CCACGCCTTTTAGAAATGTGATTT 58.531 37.500 0.00 0.00 34.64 2.17
395 402 5.572896 CCACGCCTTTTAGAAATGTGATTTC 59.427 40.000 0.00 0.00 46.90 2.17
409 416 9.519905 GAAATGTGATTTCATGACGAATTTTTG 57.480 29.630 0.00 0.00 46.05 2.44
410 417 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
411 418 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
412 419 6.478016 TGTGATTTCATGACGAATTTTTGCAA 59.522 30.769 0.00 0.00 32.32 4.08
413 420 7.005380 GTGATTTCATGACGAATTTTTGCAAG 58.995 34.615 0.00 0.00 32.32 4.01
414 421 4.970472 TTCATGACGAATTTTTGCAAGC 57.030 36.364 0.00 0.00 0.00 4.01
415 422 3.974912 TCATGACGAATTTTTGCAAGCA 58.025 36.364 0.00 0.00 0.00 3.91
416 423 3.735240 TCATGACGAATTTTTGCAAGCAC 59.265 39.130 0.00 0.00 0.00 4.40
417 424 3.435105 TGACGAATTTTTGCAAGCACT 57.565 38.095 0.00 0.00 0.00 4.40
418 425 3.779759 TGACGAATTTTTGCAAGCACTT 58.220 36.364 0.00 0.00 0.00 3.16
419 426 4.926244 TGACGAATTTTTGCAAGCACTTA 58.074 34.783 0.00 0.00 0.00 2.24
420 427 5.344066 TGACGAATTTTTGCAAGCACTTAA 58.656 33.333 0.00 0.00 0.00 1.85
421 428 5.807520 TGACGAATTTTTGCAAGCACTTAAA 59.192 32.000 0.00 0.00 0.00 1.52
422 429 6.311445 TGACGAATTTTTGCAAGCACTTAAAA 59.689 30.769 0.00 0.00 0.00 1.52
423 430 7.010923 TGACGAATTTTTGCAAGCACTTAAAAT 59.989 29.630 0.00 9.09 30.07 1.82
424 431 7.693020 ACGAATTTTTGCAAGCACTTAAAATT 58.307 26.923 20.10 20.10 36.96 1.82
425 432 8.180920 ACGAATTTTTGCAAGCACTTAAAATTT 58.819 25.926 20.58 11.00 35.65 1.82
426 433 9.008289 CGAATTTTTGCAAGCACTTAAAATTTT 57.992 25.926 20.58 8.75 35.65 1.82
429 436 9.636879 ATTTTTGCAAGCACTTAAAATTTTTGT 57.363 22.222 9.06 6.13 0.00 2.83
430 437 8.666580 TTTTGCAAGCACTTAAAATTTTTGTC 57.333 26.923 9.06 4.17 0.00 3.18
431 438 6.974932 TGCAAGCACTTAAAATTTTTGTCA 57.025 29.167 9.06 1.01 0.00 3.58
432 439 7.369803 TGCAAGCACTTAAAATTTTTGTCAA 57.630 28.000 9.06 0.00 0.00 3.18
433 440 7.983307 TGCAAGCACTTAAAATTTTTGTCAAT 58.017 26.923 9.06 0.00 0.00 2.57
434 441 9.102757 TGCAAGCACTTAAAATTTTTGTCAATA 57.897 25.926 9.06 0.00 0.00 1.90
494 501 7.681939 TTTTATTTTACTGTTCATCCGAGCT 57.318 32.000 0.00 0.00 0.00 4.09
495 502 6.903883 TTATTTTACTGTTCATCCGAGCTC 57.096 37.500 2.73 2.73 0.00 4.09
496 503 3.953712 TTTACTGTTCATCCGAGCTCA 57.046 42.857 15.40 0.00 0.00 4.26
497 504 3.953712 TTACTGTTCATCCGAGCTCAA 57.046 42.857 15.40 0.75 0.00 3.02
498 505 2.839486 ACTGTTCATCCGAGCTCAAA 57.161 45.000 15.40 0.33 0.00 2.69
499 506 3.340814 ACTGTTCATCCGAGCTCAAAT 57.659 42.857 15.40 3.09 0.00 2.32
500 507 3.005554 ACTGTTCATCCGAGCTCAAATG 58.994 45.455 15.40 15.65 0.00 2.32
501 508 3.264947 CTGTTCATCCGAGCTCAAATGA 58.735 45.455 19.10 19.10 0.00 2.57
502 509 3.264947 TGTTCATCCGAGCTCAAATGAG 58.735 45.455 20.94 6.05 44.75 2.90
511 518 2.093216 CTCAAATGAGCTCGGGTGC 58.907 57.895 9.64 0.00 35.13 5.01
512 519 0.674581 CTCAAATGAGCTCGGGTGCA 60.675 55.000 9.64 0.00 35.13 4.57
513 520 0.674581 TCAAATGAGCTCGGGTGCAG 60.675 55.000 9.64 0.00 34.99 4.41
514 521 0.674581 CAAATGAGCTCGGGTGCAGA 60.675 55.000 9.64 0.00 34.99 4.26
515 522 0.036732 AAATGAGCTCGGGTGCAGAA 59.963 50.000 9.64 0.00 34.99 3.02
516 523 0.036732 AATGAGCTCGGGTGCAGAAA 59.963 50.000 9.64 0.00 34.99 2.52
517 524 0.674895 ATGAGCTCGGGTGCAGAAAC 60.675 55.000 9.64 0.00 34.99 2.78
518 525 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
519 526 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
520 527 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
521 528 1.371183 CTCGGGTGCAGAAACTCCA 59.629 57.895 0.00 0.00 0.00 3.86
522 529 0.951040 CTCGGGTGCAGAAACTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
523 530 2.317609 CGGGTGCAGAAACTCCACG 61.318 63.158 0.00 0.00 0.00 4.94
524 531 1.227853 GGGTGCAGAAACTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
525 532 1.228657 GGGTGCAGAAACTCCACGTC 61.229 60.000 0.00 0.00 0.00 4.34
526 533 1.228657 GGTGCAGAAACTCCACGTCC 61.229 60.000 0.00 0.00 0.00 4.79
527 534 0.249911 GTGCAGAAACTCCACGTCCT 60.250 55.000 0.00 0.00 0.00 3.85
528 535 1.000506 GTGCAGAAACTCCACGTCCTA 59.999 52.381 0.00 0.00 0.00 2.94
529 536 1.899814 TGCAGAAACTCCACGTCCTAT 59.100 47.619 0.00 0.00 0.00 2.57
530 537 3.093814 TGCAGAAACTCCACGTCCTATA 58.906 45.455 0.00 0.00 0.00 1.31
531 538 3.704566 TGCAGAAACTCCACGTCCTATAT 59.295 43.478 0.00 0.00 0.00 0.86
532 539 4.891168 TGCAGAAACTCCACGTCCTATATA 59.109 41.667 0.00 0.00 0.00 0.86
533 540 5.221130 GCAGAAACTCCACGTCCTATATAC 58.779 45.833 0.00 0.00 0.00 1.47
534 541 5.009811 GCAGAAACTCCACGTCCTATATACT 59.990 44.000 0.00 0.00 0.00 2.12
535 542 6.670233 CAGAAACTCCACGTCCTATATACTC 58.330 44.000 0.00 0.00 0.00 2.59
621 628 9.875708 AGATAAGATAGTTACCTGACTGAGATT 57.124 33.333 0.00 0.00 0.00 2.40
684 691 8.912614 TTCCCTATTTATAATCTACTCCCTCC 57.087 38.462 0.00 0.00 0.00 4.30
685 692 8.019537 TCCCTATTTATAATCTACTCCCTCCA 57.980 38.462 0.00 0.00 0.00 3.86
686 693 8.642869 TCCCTATTTATAATCTACTCCCTCCAT 58.357 37.037 0.00 0.00 0.00 3.41
687 694 8.929487 CCCTATTTATAATCTACTCCCTCCATC 58.071 40.741 0.00 0.00 0.00 3.51
688 695 8.929487 CCTATTTATAATCTACTCCCTCCATCC 58.071 40.741 0.00 0.00 0.00 3.51
689 696 9.494055 CTATTTATAATCTACTCCCTCCATCCA 57.506 37.037 0.00 0.00 0.00 3.41
690 697 8.757307 ATTTATAATCTACTCCCTCCATCCAA 57.243 34.615 0.00 0.00 0.00 3.53
691 698 8.575736 TTTATAATCTACTCCCTCCATCCAAA 57.424 34.615 0.00 0.00 0.00 3.28
692 699 8.575736 TTATAATCTACTCCCTCCATCCAAAA 57.424 34.615 0.00 0.00 0.00 2.44
693 700 5.796502 AATCTACTCCCTCCATCCAAAAA 57.203 39.130 0.00 0.00 0.00 1.94
694 701 6.347061 AATCTACTCCCTCCATCCAAAAAT 57.653 37.500 0.00 0.00 0.00 1.82
695 702 7.465900 AATCTACTCCCTCCATCCAAAAATA 57.534 36.000 0.00 0.00 0.00 1.40
696 703 6.248569 TCTACTCCCTCCATCCAAAAATAC 57.751 41.667 0.00 0.00 0.00 1.89
697 704 5.970640 TCTACTCCCTCCATCCAAAAATACT 59.029 40.000 0.00 0.00 0.00 2.12
698 705 5.536497 ACTCCCTCCATCCAAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
699 706 5.264395 ACTCCCTCCATCCAAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
700 707 5.222337 ACTCCCTCCATCCAAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
701 708 5.261216 TCCCTCCATCCAAAAATACTTGTC 58.739 41.667 0.00 0.00 0.00 3.18
702 709 4.096382 CCCTCCATCCAAAAATACTTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
703 710 4.096382 CCTCCATCCAAAAATACTTGTCGG 59.904 45.833 0.00 0.00 0.00 4.79
704 711 4.912586 TCCATCCAAAAATACTTGTCGGA 58.087 39.130 0.00 0.00 0.00 4.55
705 712 4.941263 TCCATCCAAAAATACTTGTCGGAG 59.059 41.667 0.00 0.00 0.00 4.63
706 713 4.941263 CCATCCAAAAATACTTGTCGGAGA 59.059 41.667 0.00 0.00 0.00 3.71
707 714 5.414454 CCATCCAAAAATACTTGTCGGAGAA 59.586 40.000 0.00 0.00 39.69 2.87
708 715 6.072175 CCATCCAAAAATACTTGTCGGAGAAA 60.072 38.462 0.00 0.00 39.69 2.52
709 716 7.362920 CCATCCAAAAATACTTGTCGGAGAAAT 60.363 37.037 0.00 0.00 39.69 2.17
710 717 6.908825 TCCAAAAATACTTGTCGGAGAAATG 58.091 36.000 0.00 0.00 39.69 2.32
711 718 5.572896 CCAAAAATACTTGTCGGAGAAATGC 59.427 40.000 0.00 0.00 39.69 3.56
712 719 5.957842 AAAATACTTGTCGGAGAAATGCA 57.042 34.783 0.00 0.00 39.69 3.96
713 720 6.515272 AAAATACTTGTCGGAGAAATGCAT 57.485 33.333 0.00 0.00 39.69 3.96
714 721 7.624360 AAAATACTTGTCGGAGAAATGCATA 57.376 32.000 0.00 0.00 39.69 3.14
715 722 7.624360 AAATACTTGTCGGAGAAATGCATAA 57.376 32.000 0.00 0.00 39.69 1.90
716 723 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
717 724 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
718 725 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
719 726 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
720 727 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
721 728 6.507958 TGTCGGAGAAATGCATAAAAATGA 57.492 33.333 0.00 0.00 39.69 2.57
722 729 6.918626 TGTCGGAGAAATGCATAAAAATGAA 58.081 32.000 0.00 0.00 39.69 2.57
723 730 7.546358 TGTCGGAGAAATGCATAAAAATGAAT 58.454 30.769 0.00 0.00 39.69 2.57
724 731 7.488792 TGTCGGAGAAATGCATAAAAATGAATG 59.511 33.333 0.00 0.00 39.69 2.67
725 732 7.489113 GTCGGAGAAATGCATAAAAATGAATGT 59.511 33.333 0.00 0.00 39.69 2.71
726 733 8.681806 TCGGAGAAATGCATAAAAATGAATGTA 58.318 29.630 0.00 0.00 0.00 2.29
727 734 9.467258 CGGAGAAATGCATAAAAATGAATGTAT 57.533 29.630 0.00 0.00 30.86 2.29
764 771 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
765 772 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
766 773 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
767 774 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
768 775 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
769 776 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
770 777 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
771 778 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
772 779 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
773 780 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
774 781 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
775 782 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
776 783 3.449737 TCCATTCCTCCGACGAGTATTTT 59.550 43.478 0.00 0.00 33.93 1.82
777 784 4.081309 TCCATTCCTCCGACGAGTATTTTT 60.081 41.667 0.00 0.00 33.93 1.94
778 785 4.034048 CCATTCCTCCGACGAGTATTTTTG 59.966 45.833 0.00 0.00 33.93 2.44
779 786 3.241067 TCCTCCGACGAGTATTTTTGG 57.759 47.619 0.00 0.00 33.93 3.28
780 787 2.827322 TCCTCCGACGAGTATTTTTGGA 59.173 45.455 0.00 0.00 33.93 3.53
781 788 2.928116 CCTCCGACGAGTATTTTTGGAC 59.072 50.000 0.00 0.00 33.93 4.02
782 789 3.581755 CTCCGACGAGTATTTTTGGACA 58.418 45.455 0.00 0.00 0.00 4.02
783 790 3.581755 TCCGACGAGTATTTTTGGACAG 58.418 45.455 0.00 0.00 0.00 3.51
784 791 3.256383 TCCGACGAGTATTTTTGGACAGA 59.744 43.478 0.00 0.00 0.00 3.41
785 792 3.991773 CCGACGAGTATTTTTGGACAGAA 59.008 43.478 0.00 0.00 0.00 3.02
786 793 4.091509 CCGACGAGTATTTTTGGACAGAAG 59.908 45.833 0.00 0.00 0.00 2.85
787 794 4.091509 CGACGAGTATTTTTGGACAGAAGG 59.908 45.833 0.00 0.00 0.00 3.46
788 795 5.223449 ACGAGTATTTTTGGACAGAAGGA 57.777 39.130 0.00 0.00 0.00 3.36
789 796 5.238583 ACGAGTATTTTTGGACAGAAGGAG 58.761 41.667 0.00 0.00 0.00 3.69
790 797 5.221661 ACGAGTATTTTTGGACAGAAGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
791 798 6.014840 ACGAGTATTTTTGGACAGAAGGAGTA 60.015 38.462 0.00 0.00 0.00 2.59
836 843 5.989777 GCAAGGATACAACGGTCTATATGTT 59.010 40.000 0.00 0.00 41.41 2.71
841 848 3.944422 CAACGGTCTATATGTTGTGCC 57.056 47.619 0.00 0.00 38.47 5.01
865 872 3.927854 TGCTACACTGGCATAACGTAAA 58.072 40.909 0.00 0.00 34.56 2.01
871 878 5.938322 ACACTGGCATAACGTAAAATTCTG 58.062 37.500 0.00 0.00 0.00 3.02
906 913 1.673920 ACAATGGTGTTGTTGGACGTC 59.326 47.619 7.13 7.13 32.58 4.34
949 956 2.849162 TCCCATCCCTCGCATCCC 60.849 66.667 0.00 0.00 0.00 3.85
950 957 4.320456 CCCATCCCTCGCATCCCG 62.320 72.222 0.00 0.00 38.61 5.14
957 964 2.100631 CCTCGCATCCCGTGTTCAC 61.101 63.158 0.00 0.00 38.35 3.18
992 999 1.487558 TGCCCCGGTCCTTAAATACTC 59.512 52.381 0.00 0.00 0.00 2.59
993 1000 1.202734 GCCCCGGTCCTTAAATACTCC 60.203 57.143 0.00 0.00 0.00 3.85
994 1001 1.419012 CCCCGGTCCTTAAATACTCCC 59.581 57.143 0.00 0.00 0.00 4.30
995 1002 2.405559 CCCGGTCCTTAAATACTCCCT 58.594 52.381 0.00 0.00 0.00 4.20
996 1003 2.367894 CCCGGTCCTTAAATACTCCCTC 59.632 54.545 0.00 0.00 0.00 4.30
997 1004 2.035576 CCGGTCCTTAAATACTCCCTCG 59.964 54.545 0.00 0.00 0.00 4.63
999 1006 2.433239 GGTCCTTAAATACTCCCTCGCA 59.567 50.000 0.00 0.00 0.00 5.10
1009 1037 0.817634 CTCCCTCGCATCTCTCGACT 60.818 60.000 0.00 0.00 32.08 4.18
1027 1055 3.546020 CGACTCACACAACCATTGTTCAC 60.546 47.826 0.00 0.00 43.23 3.18
1050 1078 4.429505 TCTTCTTCCTCATTTCCTCTCCA 58.570 43.478 0.00 0.00 0.00 3.86
1053 1081 4.171234 TCTTCCTCATTTCCTCTCCACTT 58.829 43.478 0.00 0.00 0.00 3.16
1060 1088 4.537688 TCATTTCCTCTCCACTTCATTCCT 59.462 41.667 0.00 0.00 0.00 3.36
1070 1098 5.491070 TCCACTTCATTCCTGTGAATACTG 58.509 41.667 0.00 0.00 39.20 2.74
1080 1108 8.986847 CATTCCTGTGAATACTGAACAGATATC 58.013 37.037 8.87 0.00 43.22 1.63
1089 1117 5.021033 ACTGAACAGATATCCTCAGCTTG 57.979 43.478 19.60 5.88 39.13 4.01
1091 1119 4.033009 TGAACAGATATCCTCAGCTTGGA 58.967 43.478 7.58 7.58 38.06 3.53
1115 1143 2.113986 GCACACAGGCAGGGAAGT 59.886 61.111 0.00 0.00 0.00 3.01
1175 1203 8.873490 TTCAACAATGACTAGCAAGAAATGCCT 61.873 37.037 0.00 0.00 45.60 4.75
1191 1219 7.081976 AGAAATGCCTTTTCGTAATGTAACAC 58.918 34.615 4.21 0.00 46.89 3.32
1337 1365 4.649088 AACTGAAACAGGGCTTTAACAC 57.351 40.909 0.00 0.00 35.51 3.32
1340 1368 2.356382 TGAAACAGGGCTTTAACACGTG 59.644 45.455 15.48 15.48 0.00 4.49
1446 1474 7.631717 AGTATGGAAAAATGGAGCTTTAGTC 57.368 36.000 0.00 0.00 0.00 2.59
1494 1523 1.091771 CCGGCCACTGTCAGCAATAG 61.092 60.000 2.24 0.00 0.00 1.73
1505 1534 8.246180 CCACTGTCAGCAATAGACATTTTTAAT 58.754 33.333 0.00 0.00 44.27 1.40
1521 1550 8.576442 ACATTTTTAATTCCAACGATCTGACTT 58.424 29.630 0.00 0.00 0.00 3.01
1546 1575 1.597663 ACTGAAACGAAAGCGACCAAG 59.402 47.619 0.00 0.00 41.64 3.61
1625 1655 4.675190 AGAACAGAAATGCGACAGATTG 57.325 40.909 0.00 0.00 0.00 2.67
1632 1662 4.911610 AGAAATGCGACAGATTGAAAAACG 59.088 37.500 0.00 0.00 0.00 3.60
1722 1754 8.680039 ACGACTCTAGCTAGATATTTGTAAGT 57.320 34.615 23.48 14.07 0.00 2.24
1723 1755 8.561212 ACGACTCTAGCTAGATATTTGTAAGTG 58.439 37.037 23.48 9.86 0.00 3.16
1724 1756 8.561212 CGACTCTAGCTAGATATTTGTAAGTGT 58.439 37.037 23.48 12.88 0.00 3.55
1778 1846 3.532641 AAAGATGTGGGCCTTTCTTCT 57.467 42.857 4.53 5.89 0.00 2.85
1815 1887 4.331717 CACCCGCTCTAATAAATTTGTCGT 59.668 41.667 0.00 0.00 0.00 4.34
1831 1903 1.342174 GTCGTTCCTGGTCAGGTACAA 59.658 52.381 21.12 5.64 45.70 2.41
1836 1908 0.321653 CCTGGTCAGGTACAAGTGGC 60.322 60.000 8.78 0.00 43.61 5.01
1999 2071 2.095532 CCGAGTACTACTTCCGTGTCAG 59.904 54.545 0.00 0.00 0.00 3.51
2050 2122 7.168972 GCTGACTGACACACTCAAGATAATATC 59.831 40.741 0.00 0.00 0.00 1.63
2078 2150 1.002011 GTGCCAACTTCTCCCTCCC 60.002 63.158 0.00 0.00 0.00 4.30
2082 2154 1.633945 GCCAACTTCTCCCTCCCTAAA 59.366 52.381 0.00 0.00 0.00 1.85
2091 2163 6.504279 ACTTCTCCCTCCCTAAAGAAACATAA 59.496 38.462 0.00 0.00 0.00 1.90
2092 2164 6.561519 TCTCCCTCCCTAAAGAAACATAAG 57.438 41.667 0.00 0.00 0.00 1.73
2134 2206 2.500098 AGTGATCTAAAGCTGCCGGTAA 59.500 45.455 1.90 0.00 0.00 2.85
2137 2209 2.325583 TCTAAAGCTGCCGGTAATGG 57.674 50.000 1.90 0.00 0.00 3.16
2139 2211 2.237643 TCTAAAGCTGCCGGTAATGGAA 59.762 45.455 1.90 0.00 0.00 3.53
2143 2215 1.557832 AGCTGCCGGTAATGGAAGTAA 59.442 47.619 1.90 0.00 36.97 2.24
2144 2216 2.172717 AGCTGCCGGTAATGGAAGTAAT 59.827 45.455 1.90 0.00 36.97 1.89
2145 2217 2.548480 GCTGCCGGTAATGGAAGTAATC 59.452 50.000 1.90 0.00 36.97 1.75
2146 2218 3.804036 CTGCCGGTAATGGAAGTAATCA 58.196 45.455 1.90 0.00 29.00 2.57
2147 2219 4.389374 CTGCCGGTAATGGAAGTAATCAT 58.611 43.478 1.90 0.00 29.00 2.45
2148 2220 5.547465 CTGCCGGTAATGGAAGTAATCATA 58.453 41.667 1.90 0.00 29.00 2.15
2149 2221 5.931294 TGCCGGTAATGGAAGTAATCATAA 58.069 37.500 1.90 0.00 0.00 1.90
2150 2222 6.358178 TGCCGGTAATGGAAGTAATCATAAA 58.642 36.000 1.90 0.00 0.00 1.40
2153 2227 8.665685 GCCGGTAATGGAAGTAATCATAAATAG 58.334 37.037 1.90 0.00 0.00 1.73
2250 2324 6.340522 TCATATTATGATACCGTCCTGCATG 58.659 40.000 2.14 0.00 33.59 4.06
2252 2326 2.533266 ATGATACCGTCCTGCATGAC 57.467 50.000 11.71 11.71 0.00 3.06
2267 2373 8.408601 GTCCTGCATGACAATAAATGAACTATT 58.591 33.333 16.22 0.00 35.29 1.73
2307 2418 6.887626 TGATACTATGCACTACGGATGTAA 57.112 37.500 0.00 0.00 0.00 2.41
2444 2555 9.634021 TGCATATTGGTTTATATTGGAGTACAA 57.366 29.630 0.00 0.00 44.54 2.41
2504 2615 1.541233 CGTTTGACTCTCAAGGCCTGT 60.541 52.381 5.69 0.00 37.70 4.00
2580 4417 1.087501 GGGAATGAGAGGCGTTTCAC 58.912 55.000 1.29 0.00 0.00 3.18
2752 4589 1.261938 CCACCGACATCACCCACCTA 61.262 60.000 0.00 0.00 0.00 3.08
2813 4650 1.692519 ACGTCCACTTGGCTACTCTTT 59.307 47.619 0.00 0.00 34.44 2.52
2884 4721 2.512057 GCTGGCTGCTCTGCTCTC 60.512 66.667 9.31 0.00 38.95 3.20
3145 4985 0.394216 ACACCTTGCAACTGCTGTCA 60.394 50.000 0.00 0.00 42.66 3.58
3575 5451 1.536284 GCTACTACAAGGCTACCAGCG 60.536 57.143 0.00 0.00 43.62 5.18
3582 5458 0.613260 AAGGCTACCAGCGTTCATGA 59.387 50.000 0.00 0.00 44.97 3.07
3590 5467 3.849911 ACCAGCGTTCATGATATATCCG 58.150 45.455 10.25 7.05 0.00 4.18
3627 5509 2.045561 TGGTGAGGCGTTTCAGAAAA 57.954 45.000 0.00 0.00 0.00 2.29
3628 5510 1.673920 TGGTGAGGCGTTTCAGAAAAC 59.326 47.619 0.00 0.00 41.16 2.43
3702 5588 5.495926 AAAGAGAAGAAGAAGATGGAGCA 57.504 39.130 0.00 0.00 0.00 4.26
3712 5598 0.837691 AGATGGAGCACCTGTGACCA 60.838 55.000 15.19 15.19 40.57 4.02
3728 5614 5.261216 TGTGACCAAAGAAGAAGTTCCTTT 58.739 37.500 0.00 0.40 32.48 3.11
3729 5615 6.419791 TGTGACCAAAGAAGAAGTTCCTTTA 58.580 36.000 0.00 0.00 32.48 1.85
3730 5616 6.887545 TGTGACCAAAGAAGAAGTTCCTTTAA 59.112 34.615 0.00 0.00 32.48 1.52
3773 5659 2.079925 CTCTTGCAGCTCCTGTTTACC 58.920 52.381 0.00 0.00 33.43 2.85
3774 5660 1.699634 TCTTGCAGCTCCTGTTTACCT 59.300 47.619 0.00 0.00 33.43 3.08
3775 5661 2.903784 TCTTGCAGCTCCTGTTTACCTA 59.096 45.455 0.00 0.00 33.43 3.08
3776 5662 3.519510 TCTTGCAGCTCCTGTTTACCTAT 59.480 43.478 0.00 0.00 33.43 2.57
3798 5688 4.160329 TCTATCTTCACTGGTTGGTCTGT 58.840 43.478 0.00 0.00 0.00 3.41
3799 5689 5.330233 TCTATCTTCACTGGTTGGTCTGTA 58.670 41.667 0.00 0.00 0.00 2.74
3800 5690 4.974645 ATCTTCACTGGTTGGTCTGTAA 57.025 40.909 0.00 0.00 0.00 2.41
3858 5755 1.518133 CTCGCTGGCTGTCTGTAGC 60.518 63.158 0.00 0.00 42.94 3.58
3859 5756 2.218037 CTCGCTGGCTGTCTGTAGCA 62.218 60.000 0.00 0.00 45.46 3.49
3860 5757 1.374631 CGCTGGCTGTCTGTAGCAA 60.375 57.895 0.00 0.00 45.46 3.91
3882 5779 9.269453 AGCAAAGTATAAGAAACGTCTTAAACT 57.731 29.630 1.32 0.00 46.83 2.66
3883 5780 9.314501 GCAAAGTATAAGAAACGTCTTAAACTG 57.685 33.333 1.32 0.00 46.83 3.16
3920 5832 1.270094 TGGTGGTTACGAGCTCTTGTG 60.270 52.381 12.85 0.00 0.00 3.33
3942 5860 1.003108 GCTTCGCTTAGACCAGCTTC 58.997 55.000 0.00 0.00 37.68 3.86
3952 5870 2.099405 AGACCAGCTTCTCTGTCTAGC 58.901 52.381 0.00 0.00 41.25 3.42
3985 5904 7.947890 AGGATATCCTAGTTTTTGTTTGTTCCA 59.052 33.333 23.34 0.00 46.48 3.53
3989 5908 7.176589 TCCTAGTTTTTGTTTGTTCCATGTT 57.823 32.000 0.00 0.00 0.00 2.71
3995 5914 7.875554 AGTTTTTGTTTGTTCCATGTTTAGTGT 59.124 29.630 0.00 0.00 0.00 3.55
4001 5920 7.755822 TGTTTGTTCCATGTTTAGTGTTTGTAC 59.244 33.333 0.00 0.00 0.00 2.90
4044 5963 9.768215 TTTGATAATGGAAATCTTTTACTCCCT 57.232 29.630 0.00 0.00 0.00 4.20
4045 5964 8.980481 TGATAATGGAAATCTTTTACTCCCTC 57.020 34.615 0.00 0.00 0.00 4.30
4046 5965 7.998964 TGATAATGGAAATCTTTTACTCCCTCC 59.001 37.037 0.00 0.00 0.00 4.30
4047 5966 5.796502 ATGGAAATCTTTTACTCCCTCCA 57.203 39.130 0.00 0.00 36.23 3.86
4048 5967 5.796502 TGGAAATCTTTTACTCCCTCCAT 57.203 39.130 0.00 0.00 0.00 3.41
4049 5968 5.755849 TGGAAATCTTTTACTCCCTCCATC 58.244 41.667 0.00 0.00 0.00 3.51
4050 5969 5.133941 GGAAATCTTTTACTCCCTCCATCC 58.866 45.833 0.00 0.00 0.00 3.51
4051 5970 5.340027 GGAAATCTTTTACTCCCTCCATCCA 60.340 44.000 0.00 0.00 0.00 3.41
4052 5971 6.347061 AAATCTTTTACTCCCTCCATCCAT 57.653 37.500 0.00 0.00 0.00 3.41
4053 5972 6.347061 AATCTTTTACTCCCTCCATCCATT 57.653 37.500 0.00 0.00 0.00 3.16
4054 5973 5.796502 TCTTTTACTCCCTCCATCCATTT 57.203 39.130 0.00 0.00 0.00 2.32
4055 5974 6.901615 TCTTTTACTCCCTCCATCCATTTA 57.098 37.500 0.00 0.00 0.00 1.40
4056 5975 7.465900 TCTTTTACTCCCTCCATCCATTTAT 57.534 36.000 0.00 0.00 0.00 1.40
4057 5976 8.575736 TCTTTTACTCCCTCCATCCATTTATA 57.424 34.615 0.00 0.00 0.00 0.98
4058 5977 9.182642 TCTTTTACTCCCTCCATCCATTTATAT 57.817 33.333 0.00 0.00 0.00 0.86
4061 5980 8.624019 TTACTCCCTCCATCCATTTATATAGG 57.376 38.462 0.00 0.00 0.00 2.57
4123 6045 2.841442 AAAGTAGTTTGCCGCTCTCT 57.159 45.000 0.00 0.00 0.00 3.10
4391 6423 5.786311 ACGGTGCAACTAGATAAAACTACA 58.214 37.500 0.00 0.00 36.74 2.74
4394 6426 7.031372 CGGTGCAACTAGATAAAACTACAGTA 58.969 38.462 0.00 0.00 36.74 2.74
4471 6508 5.837437 GAGGTATCGATCATATGTCATCCC 58.163 45.833 0.00 0.00 0.00 3.85
4472 6509 5.272402 AGGTATCGATCATATGTCATCCCA 58.728 41.667 0.00 0.00 0.00 4.37
4473 6510 5.721480 AGGTATCGATCATATGTCATCCCAA 59.279 40.000 0.00 0.00 0.00 4.12
4474 6511 5.812642 GGTATCGATCATATGTCATCCCAAC 59.187 44.000 0.00 0.00 0.00 3.77
4475 6512 4.953940 TCGATCATATGTCATCCCAACA 57.046 40.909 1.90 0.00 0.00 3.33
4670 6718 2.584418 CATGGCTCGCTCGTCCTG 60.584 66.667 0.00 0.00 0.00 3.86
4687 6735 1.837051 TGCTTGGTGACGAGGAGGT 60.837 57.895 0.00 0.00 42.59 3.85
4694 6742 4.373116 GACGAGGAGGTGGCGCAA 62.373 66.667 10.83 0.00 0.00 4.85
4746 6794 2.920524 GTCATCAGACGAGGTAGAGGA 58.079 52.381 0.00 0.00 34.60 3.71
4779 6827 4.874977 TGTTCGCGCGTGTGGACA 62.875 61.111 30.98 19.41 41.80 4.02
4794 6842 2.169769 GTGGACATCCCGGAAGTTCATA 59.830 50.000 7.05 0.00 37.93 2.15
4880 6928 4.430765 GAACGAGCCGAGGCCGAA 62.431 66.667 24.18 0.00 43.17 4.30
4959 7007 1.051812 CATGGTAGCCCGAAGATCCT 58.948 55.000 0.00 0.00 0.00 3.24
5022 7073 1.560860 GAAGCAGCGAGAAAGCGTGT 61.561 55.000 0.00 0.00 43.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.844097 TGGTCACTTAACTTTTGTTCCTTT 57.156 33.333 0.00 0.00 42.45 3.11
71 72 0.960364 ATTGACGGGTGCATGGTCAC 60.960 55.000 14.51 0.00 40.14 3.67
97 104 0.687354 AAGTGGTGGTAGTCTGCCTG 59.313 55.000 8.57 0.00 0.00 4.85
147 154 1.743252 CTCGGGAGCAGAAAGGCAC 60.743 63.158 0.00 0.00 35.83 5.01
148 155 2.665000 CTCGGGAGCAGAAAGGCA 59.335 61.111 0.00 0.00 35.83 4.75
166 173 2.414481 CTGTTCACCGAGCTCAAATGAG 59.586 50.000 15.40 6.05 44.75 2.90
167 174 2.224281 ACTGTTCACCGAGCTCAAATGA 60.224 45.455 15.40 10.78 0.00 2.57
168 175 2.146342 ACTGTTCACCGAGCTCAAATG 58.854 47.619 15.40 8.47 0.00 2.32
169 176 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
170 177 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
171 178 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
172 179 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
173 180 4.451096 TCAATTTTACTGTTCACCGAGCTC 59.549 41.667 2.73 2.73 0.00 4.09
174 181 4.385825 TCAATTTTACTGTTCACCGAGCT 58.614 39.130 0.00 0.00 0.00 4.09
175 182 4.742438 TCAATTTTACTGTTCACCGAGC 57.258 40.909 0.00 0.00 0.00 5.03
176 183 7.979115 TTTTTCAATTTTACTGTTCACCGAG 57.021 32.000 0.00 0.00 0.00 4.63
220 227 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
221 228 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
222 229 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
223 230 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
224 231 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
225 232 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
226 233 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
227 234 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
228 235 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
229 236 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
230 237 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
231 238 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
232 239 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
233 240 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
234 241 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
235 242 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
236 243 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
237 244 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
238 245 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
239 246 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
240 247 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
241 248 7.548780 TGAATTTTTGCAAGCACTTAGAACTTT 59.451 29.630 0.00 0.00 0.00 2.66
242 249 7.041107 TGAATTTTTGCAAGCACTTAGAACTT 58.959 30.769 0.00 0.00 0.00 2.66
243 250 6.572519 TGAATTTTTGCAAGCACTTAGAACT 58.427 32.000 0.00 0.00 0.00 3.01
244 251 6.826893 TGAATTTTTGCAAGCACTTAGAAC 57.173 33.333 0.00 0.00 0.00 3.01
245 252 9.709495 ATAATGAATTTTTGCAAGCACTTAGAA 57.291 25.926 0.00 0.00 0.00 2.10
246 253 9.142515 CATAATGAATTTTTGCAAGCACTTAGA 57.857 29.630 0.00 0.00 0.00 2.10
247 254 9.142515 TCATAATGAATTTTTGCAAGCACTTAG 57.857 29.630 0.00 0.00 0.00 2.18
248 255 9.486497 TTCATAATGAATTTTTGCAAGCACTTA 57.514 25.926 0.00 0.00 30.26 2.24
249 256 7.966246 TCATAATGAATTTTTGCAAGCACTT 57.034 28.000 0.00 0.00 0.00 3.16
250 257 7.966246 TTCATAATGAATTTTTGCAAGCACT 57.034 28.000 0.00 0.00 30.26 4.40
251 258 9.269415 GATTTCATAATGAATTTTTGCAAGCAC 57.731 29.630 0.00 0.00 36.11 4.40
252 259 9.000486 TGATTTCATAATGAATTTTTGCAAGCA 58.000 25.926 0.00 0.00 36.11 3.91
253 260 9.269415 GTGATTTCATAATGAATTTTTGCAAGC 57.731 29.630 0.00 0.00 36.11 4.01
266 273 9.241317 GCCTTACAAGAATGTGATTTCATAATG 57.759 33.333 0.00 0.00 40.84 1.90
267 274 8.131100 CGCCTTACAAGAATGTGATTTCATAAT 58.869 33.333 0.00 0.00 40.84 1.28
268 275 7.120579 ACGCCTTACAAGAATGTGATTTCATAA 59.879 33.333 0.00 0.00 40.84 1.90
269 276 6.597672 ACGCCTTACAAGAATGTGATTTCATA 59.402 34.615 0.00 0.00 40.84 2.15
270 277 5.415701 ACGCCTTACAAGAATGTGATTTCAT 59.584 36.000 0.00 0.00 40.84 2.57
271 278 4.759693 ACGCCTTACAAGAATGTGATTTCA 59.240 37.500 0.00 0.00 40.84 2.69
272 279 5.088739 CACGCCTTACAAGAATGTGATTTC 58.911 41.667 0.00 0.00 40.84 2.17
273 280 4.082787 CCACGCCTTACAAGAATGTGATTT 60.083 41.667 8.71 0.00 40.84 2.17
274 281 3.440173 CCACGCCTTACAAGAATGTGATT 59.560 43.478 8.71 0.00 40.84 2.57
275 282 3.009723 CCACGCCTTACAAGAATGTGAT 58.990 45.455 8.71 0.00 40.84 3.06
276 283 2.422597 CCACGCCTTACAAGAATGTGA 58.577 47.619 8.71 0.00 40.84 3.58
277 284 1.135689 GCCACGCCTTACAAGAATGTG 60.136 52.381 0.00 0.00 40.84 3.21
278 285 1.165270 GCCACGCCTTACAAGAATGT 58.835 50.000 0.00 0.00 43.74 2.71
279 286 1.164411 TGCCACGCCTTACAAGAATG 58.836 50.000 0.00 0.00 0.00 2.67
280 287 1.904287 TTGCCACGCCTTACAAGAAT 58.096 45.000 0.00 0.00 0.00 2.40
281 288 1.681538 TTTGCCACGCCTTACAAGAA 58.318 45.000 0.00 0.00 0.00 2.52
282 289 1.681538 TTTTGCCACGCCTTACAAGA 58.318 45.000 0.00 0.00 0.00 3.02
283 290 2.500509 TTTTTGCCACGCCTTACAAG 57.499 45.000 0.00 0.00 0.00 3.16
303 310 6.459985 GCATTTTGGAGCCTGAATTTGTTTTT 60.460 34.615 0.00 0.00 0.00 1.94
304 311 5.008911 GCATTTTGGAGCCTGAATTTGTTTT 59.991 36.000 0.00 0.00 0.00 2.43
305 312 4.516321 GCATTTTGGAGCCTGAATTTGTTT 59.484 37.500 0.00 0.00 0.00 2.83
306 313 4.067192 GCATTTTGGAGCCTGAATTTGTT 58.933 39.130 0.00 0.00 0.00 2.83
307 314 3.325716 AGCATTTTGGAGCCTGAATTTGT 59.674 39.130 0.00 0.00 0.00 2.83
308 315 3.934068 AGCATTTTGGAGCCTGAATTTG 58.066 40.909 0.00 0.00 0.00 2.32
309 316 4.628963 AAGCATTTTGGAGCCTGAATTT 57.371 36.364 0.00 0.00 0.00 1.82
310 317 4.628963 AAAGCATTTTGGAGCCTGAATT 57.371 36.364 0.00 0.00 31.62 2.17
327 334 6.920210 ACTCTGAAAATGCTACTTTCAAAAGC 59.080 34.615 2.43 0.00 41.10 3.51
328 335 9.387123 GTACTCTGAAAATGCTACTTTCAAAAG 57.613 33.333 0.97 0.97 41.10 2.27
329 336 8.349983 GGTACTCTGAAAATGCTACTTTCAAAA 58.650 33.333 8.91 2.31 41.10 2.44
330 337 7.307751 CGGTACTCTGAAAATGCTACTTTCAAA 60.308 37.037 8.91 0.00 41.10 2.69
331 338 6.147164 CGGTACTCTGAAAATGCTACTTTCAA 59.853 38.462 8.91 2.50 41.10 2.69
332 339 5.637810 CGGTACTCTGAAAATGCTACTTTCA 59.362 40.000 7.77 7.77 39.79 2.69
333 340 5.867716 TCGGTACTCTGAAAATGCTACTTTC 59.132 40.000 0.00 0.00 34.09 2.62
334 341 5.790593 TCGGTACTCTGAAAATGCTACTTT 58.209 37.500 0.00 0.00 0.00 2.66
335 342 5.401531 TCGGTACTCTGAAAATGCTACTT 57.598 39.130 0.00 0.00 0.00 2.24
336 343 5.599999 ATCGGTACTCTGAAAATGCTACT 57.400 39.130 0.00 0.00 32.29 2.57
337 344 6.663944 AAATCGGTACTCTGAAAATGCTAC 57.336 37.500 0.00 0.00 32.29 3.58
338 345 6.653320 ACAAAATCGGTACTCTGAAAATGCTA 59.347 34.615 0.00 0.00 32.29 3.49
339 346 5.473504 ACAAAATCGGTACTCTGAAAATGCT 59.526 36.000 0.00 0.00 32.29 3.79
340 347 5.699839 ACAAAATCGGTACTCTGAAAATGC 58.300 37.500 0.00 0.00 32.29 3.56
341 348 8.574196 AAAACAAAATCGGTACTCTGAAAATG 57.426 30.769 0.00 0.00 32.29 2.32
365 372 3.802948 TTCTAAAAGGCGTGGCAAAAA 57.197 38.095 0.00 0.00 0.00 1.94
366 373 3.802948 TTTCTAAAAGGCGTGGCAAAA 57.197 38.095 0.00 0.00 0.00 2.44
367 374 3.068873 ACATTTCTAAAAGGCGTGGCAAA 59.931 39.130 0.00 0.00 0.00 3.68
368 375 2.625790 ACATTTCTAAAAGGCGTGGCAA 59.374 40.909 0.00 0.00 0.00 4.52
369 376 2.030363 CACATTTCTAAAAGGCGTGGCA 60.030 45.455 0.00 0.00 0.00 4.92
370 377 2.227865 TCACATTTCTAAAAGGCGTGGC 59.772 45.455 0.00 0.00 0.00 5.01
371 378 4.701956 ATCACATTTCTAAAAGGCGTGG 57.298 40.909 0.00 0.00 0.00 4.94
372 379 6.148948 TGAAATCACATTTCTAAAAGGCGTG 58.851 36.000 9.74 0.00 46.71 5.34
373 380 6.325919 TGAAATCACATTTCTAAAAGGCGT 57.674 33.333 9.74 0.00 46.71 5.68
374 381 7.008628 GTCATGAAATCACATTTCTAAAAGGCG 59.991 37.037 0.00 0.00 46.71 5.52
375 382 7.008628 CGTCATGAAATCACATTTCTAAAAGGC 59.991 37.037 0.00 0.00 46.71 4.35
376 383 8.236586 TCGTCATGAAATCACATTTCTAAAAGG 58.763 33.333 0.00 0.00 46.71 3.11
377 384 9.611284 TTCGTCATGAAATCACATTTCTAAAAG 57.389 29.630 0.00 1.31 46.71 2.27
382 389 9.480053 AAAAATTCGTCATGAAATCACATTTCT 57.520 25.926 0.00 0.00 46.71 2.52
383 390 9.519905 CAAAAATTCGTCATGAAATCACATTTC 57.480 29.630 0.00 2.55 46.75 2.17
384 391 8.011106 GCAAAAATTCGTCATGAAATCACATTT 58.989 29.630 0.00 0.00 40.71 2.32
385 392 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
386 393 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
387 394 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
388 395 6.450845 TGCAAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
389 396 6.346758 GCTTGCAAAAATTCGTCATGAAATCA 60.347 34.615 0.00 0.00 40.71 2.57
390 397 6.011277 GCTTGCAAAAATTCGTCATGAAATC 58.989 36.000 0.00 0.00 40.71 2.17
391 398 5.466058 TGCTTGCAAAAATTCGTCATGAAAT 59.534 32.000 0.00 0.00 40.71 2.17
392 399 4.807834 TGCTTGCAAAAATTCGTCATGAAA 59.192 33.333 0.00 0.00 40.71 2.69
393 400 4.208873 GTGCTTGCAAAAATTCGTCATGAA 59.791 37.500 0.00 0.00 41.81 2.57
394 401 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
395 402 3.737266 AGTGCTTGCAAAAATTCGTCATG 59.263 39.130 0.00 0.00 0.00 3.07
396 403 3.981211 AGTGCTTGCAAAAATTCGTCAT 58.019 36.364 0.00 0.00 0.00 3.06
397 404 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
398 405 5.881637 TTAAGTGCTTGCAAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
399 406 6.654793 TTTTAAGTGCTTGCAAAAATTCGT 57.345 29.167 0.00 0.00 0.00 3.85
400 407 8.545749 AAATTTTAAGTGCTTGCAAAAATTCG 57.454 26.923 20.09 0.00 38.25 3.34
403 410 9.636879 ACAAAAATTTTAAGTGCTTGCAAAAAT 57.363 22.222 3.34 9.39 32.61 1.82
404 411 9.122613 GACAAAAATTTTAAGTGCTTGCAAAAA 57.877 25.926 12.15 1.76 0.00 1.94
405 412 8.292448 TGACAAAAATTTTAAGTGCTTGCAAAA 58.708 25.926 12.15 0.00 0.00 2.44
406 413 7.810658 TGACAAAAATTTTAAGTGCTTGCAAA 58.189 26.923 12.15 0.00 0.00 3.68
407 414 7.369803 TGACAAAAATTTTAAGTGCTTGCAA 57.630 28.000 12.15 0.00 0.00 4.08
408 415 6.974932 TGACAAAAATTTTAAGTGCTTGCA 57.025 29.167 12.15 0.00 0.00 4.08
469 476 8.106247 AGCTCGGATGAACAGTAAAATAAAAA 57.894 30.769 0.00 0.00 0.00 1.94
470 477 7.389330 TGAGCTCGGATGAACAGTAAAATAAAA 59.611 33.333 9.64 0.00 0.00 1.52
471 478 6.876789 TGAGCTCGGATGAACAGTAAAATAAA 59.123 34.615 9.64 0.00 0.00 1.40
472 479 6.403049 TGAGCTCGGATGAACAGTAAAATAA 58.597 36.000 9.64 0.00 0.00 1.40
473 480 5.972935 TGAGCTCGGATGAACAGTAAAATA 58.027 37.500 9.64 0.00 0.00 1.40
474 481 4.832248 TGAGCTCGGATGAACAGTAAAAT 58.168 39.130 9.64 0.00 0.00 1.82
475 482 4.265904 TGAGCTCGGATGAACAGTAAAA 57.734 40.909 9.64 0.00 0.00 1.52
476 483 3.953712 TGAGCTCGGATGAACAGTAAA 57.046 42.857 9.64 0.00 0.00 2.01
477 484 3.953712 TTGAGCTCGGATGAACAGTAA 57.046 42.857 9.64 0.00 0.00 2.24
478 485 3.953712 TTTGAGCTCGGATGAACAGTA 57.046 42.857 9.64 0.00 0.00 2.74
479 486 2.839486 TTTGAGCTCGGATGAACAGT 57.161 45.000 9.64 0.00 0.00 3.55
480 487 3.264947 TCATTTGAGCTCGGATGAACAG 58.735 45.455 22.35 4.07 0.00 3.16
481 488 3.264947 CTCATTTGAGCTCGGATGAACA 58.735 45.455 23.76 9.64 35.13 3.18
482 489 3.940657 CTCATTTGAGCTCGGATGAAC 57.059 47.619 23.76 0.00 35.13 3.18
493 500 0.674581 TGCACCCGAGCTCATTTGAG 60.675 55.000 15.40 3.13 44.75 3.02
494 501 0.674581 CTGCACCCGAGCTCATTTGA 60.675 55.000 15.40 0.00 34.99 2.69
495 502 0.674581 TCTGCACCCGAGCTCATTTG 60.675 55.000 15.40 7.77 34.99 2.32
496 503 0.036732 TTCTGCACCCGAGCTCATTT 59.963 50.000 15.40 0.00 34.99 2.32
497 504 0.036732 TTTCTGCACCCGAGCTCATT 59.963 50.000 15.40 0.00 34.99 2.57
498 505 0.674895 GTTTCTGCACCCGAGCTCAT 60.675 55.000 15.40 0.00 34.99 2.90
499 506 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
500 507 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
501 508 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
502 509 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
503 510 0.951040 GTGGAGTTTCTGCACCCGAG 60.951 60.000 9.63 0.00 44.99 4.63
504 511 1.070786 GTGGAGTTTCTGCACCCGA 59.929 57.895 9.63 0.00 44.99 5.14
505 512 3.655481 GTGGAGTTTCTGCACCCG 58.345 61.111 9.63 0.00 44.99 5.28
508 515 0.249911 AGGACGTGGAGTTTCTGCAC 60.250 55.000 10.52 10.52 46.73 4.57
509 516 1.334160 TAGGACGTGGAGTTTCTGCA 58.666 50.000 0.00 0.00 0.00 4.41
510 517 2.674796 ATAGGACGTGGAGTTTCTGC 57.325 50.000 0.00 0.00 0.00 4.26
511 518 6.262496 TGAGTATATAGGACGTGGAGTTTCTG 59.738 42.308 0.00 0.00 0.00 3.02
512 519 6.363065 TGAGTATATAGGACGTGGAGTTTCT 58.637 40.000 0.00 0.00 0.00 2.52
513 520 6.630444 TGAGTATATAGGACGTGGAGTTTC 57.370 41.667 0.00 0.00 0.00 2.78
514 521 8.880991 ATATGAGTATATAGGACGTGGAGTTT 57.119 34.615 0.00 0.00 0.00 2.66
515 522 8.880991 AATATGAGTATATAGGACGTGGAGTT 57.119 34.615 0.00 0.00 0.00 3.01
516 523 8.880991 AAATATGAGTATATAGGACGTGGAGT 57.119 34.615 0.00 0.00 0.00 3.85
517 524 9.179909 AGAAATATGAGTATATAGGACGTGGAG 57.820 37.037 0.00 0.00 0.00 3.86
518 525 9.529823 AAGAAATATGAGTATATAGGACGTGGA 57.470 33.333 0.00 0.00 0.00 4.02
546 553 7.253422 CGATTAGCAAGAAATGTTTCTCCATT 58.747 34.615 8.34 0.00 46.22 3.16
556 563 5.309323 TCCAAACCGATTAGCAAGAAATG 57.691 39.130 0.00 0.00 0.00 2.32
621 628 8.805175 ACATGTGACATTGGATCTTTGAATAAA 58.195 29.630 0.00 0.00 0.00 1.40
626 633 5.315348 TCACATGTGACATTGGATCTTTGA 58.685 37.500 24.56 0.00 34.14 2.69
677 684 5.264395 ACAAGTATTTTTGGATGGAGGGAG 58.736 41.667 0.00 0.00 32.32 4.30
678 685 5.261216 GACAAGTATTTTTGGATGGAGGGA 58.739 41.667 0.00 0.00 32.32 4.20
679 686 4.096382 CGACAAGTATTTTTGGATGGAGGG 59.904 45.833 0.00 0.00 32.32 4.30
680 687 4.096382 CCGACAAGTATTTTTGGATGGAGG 59.904 45.833 0.00 0.00 32.32 4.30
681 688 4.941263 TCCGACAAGTATTTTTGGATGGAG 59.059 41.667 0.00 0.00 32.32 3.86
682 689 4.912586 TCCGACAAGTATTTTTGGATGGA 58.087 39.130 0.00 0.00 32.32 3.41
683 690 4.941263 TCTCCGACAAGTATTTTTGGATGG 59.059 41.667 0.00 0.00 32.32 3.51
684 691 6.494893 TTCTCCGACAAGTATTTTTGGATG 57.505 37.500 0.00 0.00 32.32 3.51
685 692 7.538575 CATTTCTCCGACAAGTATTTTTGGAT 58.461 34.615 0.00 0.00 32.32 3.41
686 693 6.569610 GCATTTCTCCGACAAGTATTTTTGGA 60.570 38.462 0.00 0.00 32.32 3.53
687 694 5.572896 GCATTTCTCCGACAAGTATTTTTGG 59.427 40.000 0.00 0.00 32.32 3.28
688 695 6.148948 TGCATTTCTCCGACAAGTATTTTTG 58.851 36.000 0.00 0.00 0.00 2.44
689 696 6.325919 TGCATTTCTCCGACAAGTATTTTT 57.674 33.333 0.00 0.00 0.00 1.94
690 697 5.957842 TGCATTTCTCCGACAAGTATTTT 57.042 34.783 0.00 0.00 0.00 1.82
691 698 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
692 699 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
693 700 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
694 701 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
695 702 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
696 703 7.028962 TCATTTTTATGCATTTCTCCGACAAG 58.971 34.615 3.54 0.00 0.00 3.16
697 704 6.918626 TCATTTTTATGCATTTCTCCGACAA 58.081 32.000 3.54 0.00 0.00 3.18
698 705 6.507958 TCATTTTTATGCATTTCTCCGACA 57.492 33.333 3.54 0.00 0.00 4.35
699 706 7.489113 ACATTCATTTTTATGCATTTCTCCGAC 59.511 33.333 3.54 0.00 0.00 4.79
700 707 7.546358 ACATTCATTTTTATGCATTTCTCCGA 58.454 30.769 3.54 0.00 0.00 4.55
701 708 7.760131 ACATTCATTTTTATGCATTTCTCCG 57.240 32.000 3.54 0.00 0.00 4.63
738 745 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
739 746 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
740 747 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
741 748 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
742 749 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
743 750 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
744 751 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
745 752 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
746 753 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
747 754 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
748 755 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
749 756 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
750 757 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
751 758 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
752 759 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
753 760 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
754 761 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
755 762 3.454371 AAATACTCGTCGGAGGAATGG 57.546 47.619 1.73 0.00 44.93 3.16
756 763 4.034048 CCAAAAATACTCGTCGGAGGAATG 59.966 45.833 1.73 0.00 44.93 2.67
757 764 4.081309 TCCAAAAATACTCGTCGGAGGAAT 60.081 41.667 1.73 0.00 44.93 3.01
758 765 3.258872 TCCAAAAATACTCGTCGGAGGAA 59.741 43.478 1.73 0.00 44.93 3.36
759 766 2.827322 TCCAAAAATACTCGTCGGAGGA 59.173 45.455 0.00 0.00 44.93 3.71
760 767 2.928116 GTCCAAAAATACTCGTCGGAGG 59.072 50.000 0.00 0.00 44.93 4.30
761 768 3.581755 TGTCCAAAAATACTCGTCGGAG 58.418 45.455 0.00 0.00 46.13 4.63
762 769 3.256383 TCTGTCCAAAAATACTCGTCGGA 59.744 43.478 0.00 0.00 0.00 4.55
763 770 3.581755 TCTGTCCAAAAATACTCGTCGG 58.418 45.455 0.00 0.00 0.00 4.79
764 771 4.091509 CCTTCTGTCCAAAAATACTCGTCG 59.908 45.833 0.00 0.00 0.00 5.12
765 772 5.235516 TCCTTCTGTCCAAAAATACTCGTC 58.764 41.667 0.00 0.00 0.00 4.20
766 773 5.221661 ACTCCTTCTGTCCAAAAATACTCGT 60.222 40.000 0.00 0.00 0.00 4.18
767 774 5.238583 ACTCCTTCTGTCCAAAAATACTCG 58.761 41.667 0.00 0.00 0.00 4.18
768 775 8.794335 AATACTCCTTCTGTCCAAAAATACTC 57.206 34.615 0.00 0.00 0.00 2.59
776 783 8.204836 GCTCTAATTAATACTCCTTCTGTCCAA 58.795 37.037 0.00 0.00 0.00 3.53
777 784 7.202011 GGCTCTAATTAATACTCCTTCTGTCCA 60.202 40.741 0.00 0.00 0.00 4.02
778 785 7.156000 GGCTCTAATTAATACTCCTTCTGTCC 58.844 42.308 0.00 0.00 0.00 4.02
779 786 6.864165 CGGCTCTAATTAATACTCCTTCTGTC 59.136 42.308 0.00 0.00 0.00 3.51
780 787 6.739008 GCGGCTCTAATTAATACTCCTTCTGT 60.739 42.308 0.00 0.00 0.00 3.41
781 788 5.635700 GCGGCTCTAATTAATACTCCTTCTG 59.364 44.000 0.00 0.00 0.00 3.02
782 789 5.304614 TGCGGCTCTAATTAATACTCCTTCT 59.695 40.000 0.00 0.00 0.00 2.85
783 790 5.539048 TGCGGCTCTAATTAATACTCCTTC 58.461 41.667 0.00 0.00 0.00 3.46
784 791 5.546621 TGCGGCTCTAATTAATACTCCTT 57.453 39.130 0.00 0.00 0.00 3.36
785 792 5.246203 TCATGCGGCTCTAATTAATACTCCT 59.754 40.000 0.00 0.00 0.00 3.69
786 793 5.479306 TCATGCGGCTCTAATTAATACTCC 58.521 41.667 0.00 0.00 0.00 3.85
787 794 7.459486 CAATCATGCGGCTCTAATTAATACTC 58.541 38.462 0.00 0.00 0.00 2.59
788 795 6.128172 GCAATCATGCGGCTCTAATTAATACT 60.128 38.462 0.00 0.00 43.83 2.12
789 796 6.024049 GCAATCATGCGGCTCTAATTAATAC 58.976 40.000 0.00 0.00 43.83 1.89
790 797 6.182039 GCAATCATGCGGCTCTAATTAATA 57.818 37.500 0.00 0.00 43.83 0.98
791 798 5.051891 GCAATCATGCGGCTCTAATTAAT 57.948 39.130 0.00 0.00 43.83 1.40
836 843 2.945510 CCAGTGTAGCAATGGCACA 58.054 52.632 2.64 0.00 42.54 4.57
841 848 2.677836 ACGTTATGCCAGTGTAGCAATG 59.322 45.455 0.00 0.00 44.83 2.82
865 872 9.976511 CATTGTCAGCCATTATTAATCAGAATT 57.023 29.630 0.00 0.00 0.00 2.17
871 878 7.042797 ACACCATTGTCAGCCATTATTAATC 57.957 36.000 0.00 0.00 0.00 1.75
926 933 1.450312 GCGAGGGATGGGACTTGTG 60.450 63.158 0.00 0.00 0.00 3.33
950 957 4.643387 AGGCTGGCCCGTGAACAC 62.643 66.667 8.11 0.00 39.21 3.32
992 999 1.098129 TGAGTCGAGAGATGCGAGGG 61.098 60.000 0.00 0.00 45.19 4.30
993 1000 0.028770 GTGAGTCGAGAGATGCGAGG 59.971 60.000 0.00 0.00 45.19 4.63
994 1001 0.729690 TGTGAGTCGAGAGATGCGAG 59.270 55.000 0.00 0.00 45.19 5.03
995 1002 0.448197 GTGTGAGTCGAGAGATGCGA 59.552 55.000 0.00 0.00 45.19 5.10
996 1003 0.169009 TGTGTGAGTCGAGAGATGCG 59.831 55.000 0.00 0.00 45.19 4.73
997 1004 1.989165 GTTGTGTGAGTCGAGAGATGC 59.011 52.381 0.00 0.00 45.19 3.91
999 1006 2.239400 TGGTTGTGTGAGTCGAGAGAT 58.761 47.619 0.00 0.00 45.19 2.75
1009 1037 3.884895 AGAGTGAACAATGGTTGTGTGA 58.115 40.909 0.00 0.00 44.59 3.58
1027 1055 4.469227 TGGAGAGGAAATGAGGAAGAAGAG 59.531 45.833 0.00 0.00 0.00 2.85
1050 1078 6.533730 TGTTCAGTATTCACAGGAATGAAGT 58.466 36.000 0.41 0.00 43.47 3.01
1053 1081 6.358974 TCTGTTCAGTATTCACAGGAATGA 57.641 37.500 0.41 0.00 43.47 2.57
1060 1088 7.660030 TGAGGATATCTGTTCAGTATTCACA 57.340 36.000 2.05 0.35 0.00 3.58
1070 1098 4.679373 TCCAAGCTGAGGATATCTGTTC 57.321 45.455 4.11 0.00 0.00 3.18
1089 1117 2.639286 CCTGTGTGCACGCTTTCC 59.361 61.111 29.04 5.82 0.00 3.13
1091 1119 2.828095 TGCCTGTGTGCACGCTTT 60.828 55.556 29.04 0.00 36.04 3.51
1146 1174 6.545504 TTCTTGCTAGTCATTGTTGAAGAC 57.454 37.500 0.00 0.00 32.48 3.01
1175 1203 8.613482 TCATCACAAAGTGTTACATTACGAAAA 58.387 29.630 0.00 0.00 34.79 2.29
1179 1207 7.572759 AGTTCATCACAAAGTGTTACATTACG 58.427 34.615 0.00 0.00 34.79 3.18
1279 1307 8.972458 TGCAAACTATTTTATACAGCTGGATA 57.028 30.769 19.93 17.43 0.00 2.59
1324 1352 3.430333 AAAACACGTGTTAAAGCCCTG 57.570 42.857 32.47 0.00 37.25 4.45
1446 1474 1.861971 TGCGCTTCATCATCTAGCTG 58.138 50.000 9.73 0.00 32.80 4.24
1476 1505 0.108186 TCTATTGCTGACAGTGGCCG 60.108 55.000 3.99 0.00 0.00 6.13
1494 1523 8.237267 AGTCAGATCGTTGGAATTAAAAATGTC 58.763 33.333 0.00 0.00 0.00 3.06
1505 1534 7.608153 TCAGTTATAAAGTCAGATCGTTGGAA 58.392 34.615 0.00 0.00 0.00 3.53
1521 1550 4.989797 TGGTCGCTTTCGTTTCAGTTATAA 59.010 37.500 0.00 0.00 36.96 0.98
1591 1621 6.728200 CATTTCTGTTCTAGTTTTGACTGCA 58.272 36.000 0.00 0.00 0.00 4.41
1597 1627 5.747565 TGTCGCATTTCTGTTCTAGTTTTG 58.252 37.500 0.00 0.00 0.00 2.44
1625 1655 7.980742 AAAGAGTTTCCATGTTACGTTTTTC 57.019 32.000 0.00 0.00 0.00 2.29
1661 1691 8.314751 GCCTTATGTAGTGTCTATAATGGTGAT 58.685 37.037 0.00 0.00 0.00 3.06
1663 1693 6.586463 CGCCTTATGTAGTGTCTATAATGGTG 59.414 42.308 0.00 0.00 0.00 4.17
1720 1752 7.974501 GCACTTTACATATCACTACACTACACT 59.025 37.037 0.00 0.00 0.00 3.55
1721 1753 7.758076 TGCACTTTACATATCACTACACTACAC 59.242 37.037 0.00 0.00 0.00 2.90
1722 1754 7.832769 TGCACTTTACATATCACTACACTACA 58.167 34.615 0.00 0.00 0.00 2.74
1723 1755 8.697846 TTGCACTTTACATATCACTACACTAC 57.302 34.615 0.00 0.00 0.00 2.73
1724 1756 9.884636 AATTGCACTTTACATATCACTACACTA 57.115 29.630 0.00 0.00 0.00 2.74
1756 1824 3.575687 AGAAGAAAGGCCCACATCTTTTG 59.424 43.478 0.00 0.00 33.85 2.44
1778 1846 1.338973 GCGGGTGACGGATATAAGTGA 59.661 52.381 0.00 0.00 44.51 3.41
1836 1908 1.153958 TGTCGATGCGAGCAGTCAG 60.154 57.895 3.58 0.00 36.23 3.51
1999 2071 2.866028 CAAGGTGCTCGCTCTTGC 59.134 61.111 10.66 0.00 32.75 4.01
2015 2087 1.290324 GTCAGTCAGCTTCTCCGCA 59.710 57.895 0.00 0.00 0.00 5.69
2050 2122 3.326747 AGAAGTTGGCACGTAAGCTTAG 58.673 45.455 6.38 4.02 45.62 2.18
2092 2164 7.556844 TCACTAGACCAATGATCTAAAAGGTC 58.443 38.462 0.00 12.41 44.43 3.85
2106 2178 4.383118 GGCAGCTTTAGATCACTAGACCAA 60.383 45.833 0.00 0.00 0.00 3.67
2121 2193 1.271926 ACTTCCATTACCGGCAGCTTT 60.272 47.619 0.00 0.00 0.00 3.51
2123 2195 1.200519 TACTTCCATTACCGGCAGCT 58.799 50.000 0.00 0.00 0.00 4.24
2124 2196 2.032680 TTACTTCCATTACCGGCAGC 57.967 50.000 0.00 0.00 0.00 5.25
2241 2315 6.199937 AGTTCATTTATTGTCATGCAGGAC 57.800 37.500 23.99 23.99 38.29 3.85
2243 2317 8.627403 AGAATAGTTCATTTATTGTCATGCAGG 58.373 33.333 0.00 0.00 0.00 4.85
2283 2394 5.784578 ACATCCGTAGTGCATAGTATCAA 57.215 39.130 0.00 0.00 0.00 2.57
2418 2529 9.634021 TTGTACTCCAATATAAACCAATATGCA 57.366 29.630 0.00 0.00 0.00 3.96
2467 2578 5.462398 GTCAAACGATATATGGAGGTGTGAC 59.538 44.000 1.28 6.17 38.31 3.67
2566 4403 3.128349 GTTGTAAGTGAAACGCCTCTCA 58.872 45.455 0.00 0.00 45.86 3.27
2813 4650 2.197324 GTTGTGGTGGAGGCCCAA 59.803 61.111 0.00 0.00 45.59 4.12
2884 4721 3.868200 AAGGTCCTTTGCCAGGCGG 62.868 63.158 7.03 1.65 43.55 6.13
3145 4985 2.969628 CGTAGGTCTTGAGCTCCATT 57.030 50.000 12.15 0.00 0.00 3.16
3590 5467 7.255277 GCCTCACCAAATTTGAAGGATAGATAC 60.255 40.741 25.79 11.25 0.00 2.24
3627 5509 6.585322 GCGTCACTTTGTTTAGATAGTAGTGT 59.415 38.462 0.00 0.00 34.62 3.55
3628 5510 6.807230 AGCGTCACTTTGTTTAGATAGTAGTG 59.193 38.462 0.00 0.00 34.38 2.74
3683 5569 3.197549 AGGTGCTCCATCTTCTTCTTCTC 59.802 47.826 7.70 0.00 35.89 2.87
3684 5570 3.055240 CAGGTGCTCCATCTTCTTCTTCT 60.055 47.826 7.70 0.00 35.89 2.85
3702 5588 3.933861 ACTTCTTCTTTGGTCACAGGT 57.066 42.857 0.00 0.00 0.00 4.00
3773 5659 6.097554 ACAGACCAACCAGTGAAGATAGATAG 59.902 42.308 0.00 0.00 0.00 2.08
3774 5660 5.958380 ACAGACCAACCAGTGAAGATAGATA 59.042 40.000 0.00 0.00 0.00 1.98
3775 5661 4.780021 ACAGACCAACCAGTGAAGATAGAT 59.220 41.667 0.00 0.00 0.00 1.98
3776 5662 4.160329 ACAGACCAACCAGTGAAGATAGA 58.840 43.478 0.00 0.00 0.00 1.98
3834 5728 2.919856 ACAGCCAGCGAGTCCAGT 60.920 61.111 0.00 0.00 0.00 4.00
3858 5755 9.807386 CCAGTTTAAGACGTTTCTTATACTTTG 57.193 33.333 13.70 7.86 46.31 2.77
3859 5756 8.996271 CCCAGTTTAAGACGTTTCTTATACTTT 58.004 33.333 13.70 0.00 46.31 2.66
3860 5757 7.605309 CCCCAGTTTAAGACGTTTCTTATACTT 59.395 37.037 13.70 3.19 46.31 2.24
3882 5779 1.496060 CATCAGCTGGTAGTACCCCA 58.504 55.000 16.91 0.00 37.50 4.96
3883 5780 0.759346 CCATCAGCTGGTAGTACCCC 59.241 60.000 16.91 7.83 40.49 4.95
3942 5860 1.133637 TCCTAGGGCAGCTAGACAGAG 60.134 57.143 9.46 0.00 0.00 3.35
4019 5938 9.408648 GAGGGAGTAAAAGATTTCCATTATCAA 57.591 33.333 0.00 0.00 0.00 2.57
4039 5958 5.163152 GCCCTATATAAATGGATGGAGGGAG 60.163 48.000 7.83 0.00 44.48 4.30
4040 5959 4.726825 GCCCTATATAAATGGATGGAGGGA 59.273 45.833 7.83 0.00 44.48 4.20
4041 5960 4.141158 GGCCCTATATAAATGGATGGAGGG 60.141 50.000 0.00 0.00 44.52 4.30
4042 5961 4.728860 AGGCCCTATATAAATGGATGGAGG 59.271 45.833 0.00 0.00 0.00 4.30
4043 5962 5.983333 AGGCCCTATATAAATGGATGGAG 57.017 43.478 0.00 0.00 0.00 3.86
4044 5963 7.203361 TCTAAGGCCCTATATAAATGGATGGA 58.797 38.462 0.00 0.00 0.00 3.41
4045 5964 7.451731 TCTAAGGCCCTATATAAATGGATGG 57.548 40.000 0.00 0.00 0.00 3.51
4046 5965 6.995091 GCTCTAAGGCCCTATATAAATGGATG 59.005 42.308 0.00 0.00 0.00 3.51
4047 5966 6.678411 TGCTCTAAGGCCCTATATAAATGGAT 59.322 38.462 0.00 0.00 0.00 3.41
4048 5967 6.029431 TGCTCTAAGGCCCTATATAAATGGA 58.971 40.000 0.00 0.00 0.00 3.41
4049 5968 6.313519 TGCTCTAAGGCCCTATATAAATGG 57.686 41.667 0.00 0.00 0.00 3.16
4050 5969 7.800092 AGATGCTCTAAGGCCCTATATAAATG 58.200 38.462 0.00 0.00 0.00 2.32
4051 5970 7.071824 GGAGATGCTCTAAGGCCCTATATAAAT 59.928 40.741 0.00 0.00 0.00 1.40
4052 5971 6.384305 GGAGATGCTCTAAGGCCCTATATAAA 59.616 42.308 0.00 0.00 0.00 1.40
4053 5972 5.900123 GGAGATGCTCTAAGGCCCTATATAA 59.100 44.000 0.00 0.00 0.00 0.98
4054 5973 5.043356 TGGAGATGCTCTAAGGCCCTATATA 60.043 44.000 0.00 0.00 0.00 0.86
4055 5974 4.265032 TGGAGATGCTCTAAGGCCCTATAT 60.265 45.833 0.00 0.00 0.00 0.86
4056 5975 3.077543 TGGAGATGCTCTAAGGCCCTATA 59.922 47.826 0.00 0.00 0.00 1.31
4057 5976 2.158097 TGGAGATGCTCTAAGGCCCTAT 60.158 50.000 0.00 0.00 0.00 2.57
4058 5977 1.220493 TGGAGATGCTCTAAGGCCCTA 59.780 52.381 0.00 0.00 0.00 3.53
4059 5978 0.030705 TGGAGATGCTCTAAGGCCCT 60.031 55.000 0.00 0.00 0.00 5.19
4060 5979 0.839946 TTGGAGATGCTCTAAGGCCC 59.160 55.000 0.00 0.00 0.00 5.80
4061 5980 1.210478 TGTTGGAGATGCTCTAAGGCC 59.790 52.381 0.00 0.00 31.92 5.19
4119 6041 1.066858 GCCAAACCTGACGATGAGAGA 60.067 52.381 0.00 0.00 0.00 3.10
4121 6043 0.389817 CGCCAAACCTGACGATGAGA 60.390 55.000 0.00 0.00 0.00 3.27
4123 6045 2.032634 GCGCCAAACCTGACGATGA 61.033 57.895 0.00 0.00 0.00 2.92
4196 6161 4.731503 GACTTGCGTGCGCTGCTG 62.732 66.667 22.29 17.38 42.51 4.41
4202 6167 1.130373 ACAAATATGGACTTGCGTGCG 59.870 47.619 0.00 0.00 33.68 5.34
4391 6423 4.141733 GGACTCGGAGTAGTTCTAGGTACT 60.142 50.000 11.27 4.26 46.37 2.73
4394 6426 2.845586 AGGACTCGGAGTAGTTCTAGGT 59.154 50.000 11.27 0.00 33.30 3.08
4460 6497 5.624159 ACGATGAATGTTGGGATGACATAT 58.376 37.500 0.00 0.00 36.76 1.78
4461 6498 5.034852 ACGATGAATGTTGGGATGACATA 57.965 39.130 0.00 0.00 36.76 2.29
4462 6499 3.879295 GACGATGAATGTTGGGATGACAT 59.121 43.478 0.00 0.00 39.31 3.06
4463 6500 3.055167 AGACGATGAATGTTGGGATGACA 60.055 43.478 0.00 0.00 0.00 3.58
4464 6501 3.310774 CAGACGATGAATGTTGGGATGAC 59.689 47.826 0.00 0.00 0.00 3.06
4465 6502 3.197549 TCAGACGATGAATGTTGGGATGA 59.802 43.478 0.00 0.00 34.02 2.92
4466 6503 3.310774 GTCAGACGATGAATGTTGGGATG 59.689 47.826 0.00 0.00 40.43 3.51
4467 6504 3.535561 GTCAGACGATGAATGTTGGGAT 58.464 45.455 0.00 0.00 40.43 3.85
4468 6505 2.673893 CGTCAGACGATGAATGTTGGGA 60.674 50.000 18.63 0.00 46.05 4.37
4469 6506 1.660607 CGTCAGACGATGAATGTTGGG 59.339 52.381 18.63 0.00 46.05 4.12
4470 6507 2.092681 CACGTCAGACGATGAATGTTGG 59.907 50.000 29.53 0.00 46.05 3.77
4471 6508 2.986479 TCACGTCAGACGATGAATGTTG 59.014 45.455 29.53 14.02 46.05 3.33
4472 6509 3.297830 TCACGTCAGACGATGAATGTT 57.702 42.857 29.53 0.88 46.05 2.71
4473 6510 3.057526 TCTTCACGTCAGACGATGAATGT 60.058 43.478 29.53 1.69 46.05 2.71
4474 6511 3.501950 TCTTCACGTCAGACGATGAATG 58.498 45.455 29.53 21.96 46.05 2.67
4475 6512 3.850122 TCTTCACGTCAGACGATGAAT 57.150 42.857 29.53 3.31 46.05 2.57
4670 6718 1.374758 CACCTCCTCGTCACCAAGC 60.375 63.158 0.00 0.00 0.00 4.01
4693 6741 2.280592 GGACCACGTTCGGCTGTT 60.281 61.111 0.00 0.00 0.00 3.16
4694 6742 3.542676 TGGACCACGTTCGGCTGT 61.543 61.111 0.00 0.00 0.00 4.40
4728 6776 1.606668 GCTCCTCTACCTCGTCTGATG 59.393 57.143 0.00 0.00 0.00 3.07
4779 6827 1.691976 TCGCATATGAACTTCCGGGAT 59.308 47.619 6.97 0.00 0.00 3.85
4854 6902 2.048127 GGCTCGTTCCGAACAGCT 60.048 61.111 23.24 0.00 36.47 4.24
4929 6977 1.441729 CTACCATGGCGTCCACGAT 59.558 57.895 13.04 0.00 43.02 3.73
4941 6989 1.343069 GAGGATCTTCGGGCTACCAT 58.657 55.000 0.00 0.00 36.13 3.55
5002 7050 1.005630 ACGCTTTCTCGCTGCTTCT 60.006 52.632 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.