Multiple sequence alignment - TraesCS4A01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G392600 chr4A 100.000 2848 0 0 1 2848 668350804 668353651 0.000000e+00 5260
1 TraesCS4A01G392600 chr4A 84.322 472 46 15 139 599 668372190 668372644 1.210000e-118 436
2 TraesCS4A01G392600 chr4A 82.979 376 27 14 605 957 668372963 668373324 3.560000e-79 305
3 TraesCS4A01G392600 chr4A 89.071 183 20 0 1399 1581 668323925 668324107 7.940000e-56 228
4 TraesCS4A01G392600 chr7A 86.533 1344 114 34 605 1932 57095538 57096830 0.000000e+00 1417
5 TraesCS4A01G392600 chr7A 84.872 1018 81 32 856 1849 57156596 57157564 0.000000e+00 959
6 TraesCS4A01G392600 chr7A 92.432 370 25 3 2216 2584 546062125 546062492 2.510000e-145 525
7 TraesCS4A01G392600 chr7A 79.787 470 60 17 142 599 410501022 410500576 2.760000e-80 309
8 TraesCS4A01G392600 chr7A 85.567 194 23 5 890 1079 57130634 57130826 6.220000e-47 198
9 TraesCS4A01G392600 chr7A 84.127 126 19 1 3 128 410501209 410501085 1.390000e-23 121
10 TraesCS4A01G392600 chr7D 87.219 1111 90 27 605 1686 53637426 53638513 0.000000e+00 1218
11 TraesCS4A01G392600 chr7D 84.789 1065 84 30 827 1849 53710773 53711801 0.000000e+00 998
12 TraesCS4A01G392600 chr7D 84.848 297 27 8 2569 2848 26208823 26209118 1.670000e-72 283
13 TraesCS4A01G392600 chr7D 78.465 469 65 19 142 599 98036708 98036265 1.010000e-69 274
14 TraesCS4A01G392600 chr7D 88.587 184 19 2 1399 1581 53558666 53558848 3.690000e-54 222
15 TraesCS4A01G392600 chr7D 87.568 185 23 0 1397 1581 53700207 53700391 6.180000e-52 215
16 TraesCS4A01G392600 chr7D 81.683 202 28 6 365 563 44657397 44657202 2.940000e-35 159
17 TraesCS4A01G392600 chr7D 86.667 135 13 4 682 816 53710595 53710724 8.220000e-31 145
18 TraesCS4A01G392600 chr7D 91.000 100 9 0 1048 1147 46965670 46965769 4.950000e-28 135
19 TraesCS4A01G392600 chr3A 85.534 712 66 17 935 1636 639620001 639620685 0.000000e+00 710
20 TraesCS4A01G392600 chr3A 80.420 286 18 18 1640 1913 639628021 639628280 1.740000e-42 183
21 TraesCS4A01G392600 chr2D 84.615 676 54 29 2215 2848 483758953 483759620 6.700000e-176 627
22 TraesCS4A01G392600 chr2D 82.400 625 61 30 2266 2848 189973283 189972666 1.520000e-137 499
23 TraesCS4A01G392600 chr2D 78.027 446 66 23 166 606 157034067 157033649 4.710000e-63 252
24 TraesCS4A01G392600 chr2D 81.863 204 22 10 365 563 166104850 166105043 1.060000e-34 158
25 TraesCS4A01G392600 chr2B 83.852 675 61 25 2213 2848 5165199 5164534 1.460000e-167 599
26 TraesCS4A01G392600 chr2B 81.918 636 73 29 2218 2848 246376301 246375703 1.520000e-137 499
27 TraesCS4A01G392600 chr2B 90.296 371 28 7 2216 2584 635172841 635173205 1.980000e-131 479
28 TraesCS4A01G392600 chr5B 94.118 357 14 4 2216 2568 542735882 542735529 1.160000e-148 536
29 TraesCS4A01G392600 chr5B 91.957 373 26 3 2220 2592 546717513 546717145 1.170000e-143 520
30 TraesCS4A01G392600 chr5B 92.162 370 22 6 2216 2584 56915529 56915166 1.510000e-142 516
31 TraesCS4A01G392600 chr5B 88.070 285 19 9 2576 2847 546717132 546716850 9.840000e-85 324
32 TraesCS4A01G392600 chr5B 86.316 285 26 6 2576 2848 609849123 609849406 5.970000e-77 298
33 TraesCS4A01G392600 chr5D 81.997 661 80 20 2216 2848 365990418 365989769 2.510000e-145 525
34 TraesCS4A01G392600 chr5D 88.055 293 21 6 2569 2848 513645207 513644916 4.550000e-88 335
35 TraesCS4A01G392600 chr5D 82.143 252 29 5 350 593 192263266 192263023 4.810000e-48 202
36 TraesCS4A01G392600 chr6B 91.328 369 28 3 2216 2584 134485938 134485574 4.240000e-138 501
37 TraesCS4A01G392600 chr3B 90.541 370 31 3 2216 2584 805327174 805327540 1.190000e-133 486
38 TraesCS4A01G392600 chr3B 85.315 286 26 7 2576 2848 805327560 805327842 6.010000e-72 281
39 TraesCS4A01G392600 chr3B 82.667 225 27 11 372 593 543036771 543036986 3.750000e-44 189
40 TraesCS4A01G392600 chr6D 90.463 367 31 3 2218 2584 368139318 368138956 5.520000e-132 481
41 TraesCS4A01G392600 chr6D 87.197 289 20 7 2576 2848 368138936 368138649 2.130000e-81 313
42 TraesCS4A01G392600 chr6D 86.364 286 19 9 2576 2848 28252837 28252559 7.720000e-76 294
43 TraesCS4A01G392600 chr6D 74.658 438 68 25 131 563 141278973 141278574 1.370000e-33 154
44 TraesCS4A01G392600 chr3D 94.096 271 10 3 1311 1581 500110049 500110313 9.500000e-110 407
45 TraesCS4A01G392600 chr3D 85.324 293 34 6 935 1223 500109745 500110032 7.720000e-76 294
46 TraesCS4A01G392600 chr2A 80.696 575 55 25 2315 2848 19575883 19575324 2.060000e-106 396
47 TraesCS4A01G392600 chr2A 83.509 285 32 8 2576 2848 763364014 763363733 4.710000e-63 252
48 TraesCS4A01G392600 chr5A 87.097 279 27 6 2576 2848 528291114 528291389 9.910000e-80 307
49 TraesCS4A01G392600 chr7B 76.106 452 77 22 142 585 579352823 579353251 1.030000e-49 207
50 TraesCS4A01G392600 chrUn 83.721 129 19 2 161 288 114241598 114241471 1.390000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G392600 chr4A 668350804 668353651 2847 False 5260.0 5260 100.0000 1 2848 1 chr4A.!!$F2 2847
1 TraesCS4A01G392600 chr4A 668372190 668373324 1134 False 370.5 436 83.6505 139 957 2 chr4A.!!$F3 818
2 TraesCS4A01G392600 chr7A 57095538 57096830 1292 False 1417.0 1417 86.5330 605 1932 1 chr7A.!!$F1 1327
3 TraesCS4A01G392600 chr7A 57156596 57157564 968 False 959.0 959 84.8720 856 1849 1 chr7A.!!$F3 993
4 TraesCS4A01G392600 chr7A 410500576 410501209 633 True 215.0 309 81.9570 3 599 2 chr7A.!!$R1 596
5 TraesCS4A01G392600 chr7D 53637426 53638513 1087 False 1218.0 1218 87.2190 605 1686 1 chr7D.!!$F4 1081
6 TraesCS4A01G392600 chr7D 53710595 53711801 1206 False 571.5 998 85.7280 682 1849 2 chr7D.!!$F6 1167
7 TraesCS4A01G392600 chr3A 639620001 639620685 684 False 710.0 710 85.5340 935 1636 1 chr3A.!!$F1 701
8 TraesCS4A01G392600 chr2D 483758953 483759620 667 False 627.0 627 84.6150 2215 2848 1 chr2D.!!$F2 633
9 TraesCS4A01G392600 chr2D 189972666 189973283 617 True 499.0 499 82.4000 2266 2848 1 chr2D.!!$R2 582
10 TraesCS4A01G392600 chr2B 5164534 5165199 665 True 599.0 599 83.8520 2213 2848 1 chr2B.!!$R1 635
11 TraesCS4A01G392600 chr2B 246375703 246376301 598 True 499.0 499 81.9180 2218 2848 1 chr2B.!!$R2 630
12 TraesCS4A01G392600 chr5B 546716850 546717513 663 True 422.0 520 90.0135 2220 2847 2 chr5B.!!$R3 627
13 TraesCS4A01G392600 chr5D 365989769 365990418 649 True 525.0 525 81.9970 2216 2848 1 chr5D.!!$R2 632
14 TraesCS4A01G392600 chr3B 805327174 805327842 668 False 383.5 486 87.9280 2216 2848 2 chr3B.!!$F2 632
15 TraesCS4A01G392600 chr6D 368138649 368139318 669 True 397.0 481 88.8300 2218 2848 2 chr6D.!!$R3 630
16 TraesCS4A01G392600 chr3D 500109745 500110313 568 False 350.5 407 89.7100 935 1581 2 chr3D.!!$F1 646
17 TraesCS4A01G392600 chr2A 19575324 19575883 559 True 396.0 396 80.6960 2315 2848 1 chr2A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 1278 0.314935 CACAGTTTTGGATGCCGCTT 59.685 50.0 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2638 0.028902 AAAAAGCTCAACGTGGTCGC 59.971 50.0 0.0 0.0 41.18 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.111277 GAAGAGTGAGGAGGAGGAGC 58.889 60.000 0.00 0.00 0.00 4.70
21 22 1.077357 GAGTGAGGAGGAGGAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
26 27 4.200283 GGAGGAGGAGCGACGCAG 62.200 72.222 23.70 0.00 0.00 5.18
50 51 2.524394 GGAGGAGGAGGCGGCATA 60.524 66.667 13.08 0.00 0.00 3.14
85 86 3.112126 GATGCCATGGCGTTGTCCG 62.112 63.158 31.62 0.00 45.51 4.79
86 87 3.918253 ATGCCATGGCGTTGTCCGT 62.918 57.895 30.87 7.01 45.51 4.69
88 89 2.668212 CCATGGCGTTGTCCGTGT 60.668 61.111 0.00 0.00 40.66 4.49
136 137 2.553727 CCGCCGTCCCTAGAGTAGC 61.554 68.421 0.00 0.00 0.00 3.58
137 138 1.822613 CGCCGTCCCTAGAGTAGCA 60.823 63.158 0.00 0.00 0.00 3.49
140 141 0.747283 CCGTCCCTAGAGTAGCACGT 60.747 60.000 0.00 0.00 0.00 4.49
180 230 3.714487 ATTTGGATGGGGGCGACGG 62.714 63.158 0.00 0.00 0.00 4.79
212 262 1.823295 GGCCTACCTCGAGCAATGA 59.177 57.895 6.99 0.00 0.00 2.57
219 269 1.446792 CTCGAGCAATGACGCCAGT 60.447 57.895 0.00 0.00 0.00 4.00
295 352 4.504916 CGAGGAGGAGCAGCGTGG 62.505 72.222 0.00 0.00 0.00 4.94
308 365 3.470888 CGTGGGGCGAAGGATCCT 61.471 66.667 9.02 9.02 44.77 3.24
309 366 2.506472 GTGGGGCGAAGGATCCTC 59.494 66.667 16.52 7.91 0.00 3.71
313 370 2.107141 GGCGAAGGATCCTCCACG 59.893 66.667 16.52 20.62 39.61 4.94
315 372 3.211288 CGAAGGATCCTCCACGCT 58.789 61.111 16.52 0.00 39.61 5.07
321 378 2.844839 ATCCTCCACGCTAGGCCC 60.845 66.667 0.00 0.00 33.84 5.80
377 434 4.796231 GCGTCCGACATCGCCACT 62.796 66.667 0.00 0.00 45.54 4.00
383 440 2.265739 GACATCGCCACTGCCTGA 59.734 61.111 0.00 0.00 0.00 3.86
462 519 1.593209 GTTGACAACGAGGACGCCA 60.593 57.895 1.86 0.00 43.96 5.69
463 520 1.144276 TTGACAACGAGGACGCCAA 59.856 52.632 0.00 0.00 43.96 4.52
490 548 1.408474 CGCGCCACCTCGTAGTTTAC 61.408 60.000 0.00 0.00 0.00 2.01
531 596 2.578786 TGTAAGTGTGGACTCTCGTCA 58.421 47.619 0.00 0.00 42.05 4.35
533 598 1.693627 AAGTGTGGACTCTCGTCAGT 58.306 50.000 0.00 0.00 42.05 3.41
552 617 0.952010 TCTTCGTGGCCGGCTTTAAC 60.952 55.000 28.56 17.93 33.95 2.01
662 1043 4.513442 TGCCTCGTGTAGCAAAATTATCT 58.487 39.130 0.00 0.00 35.69 1.98
663 1044 5.666462 TGCCTCGTGTAGCAAAATTATCTA 58.334 37.500 0.00 0.00 35.69 1.98
664 1045 5.522460 TGCCTCGTGTAGCAAAATTATCTAC 59.478 40.000 0.00 5.30 35.69 2.59
665 1046 5.753921 GCCTCGTGTAGCAAAATTATCTACT 59.246 40.000 10.86 0.00 35.10 2.57
666 1047 6.074249 GCCTCGTGTAGCAAAATTATCTACTC 60.074 42.308 10.86 7.77 35.10 2.59
667 1048 6.421202 CCTCGTGTAGCAAAATTATCTACTCC 59.579 42.308 10.86 4.14 35.10 3.85
668 1049 6.278363 TCGTGTAGCAAAATTATCTACTCCC 58.722 40.000 10.86 2.54 35.10 4.30
669 1050 6.097839 TCGTGTAGCAAAATTATCTACTCCCT 59.902 38.462 10.86 0.00 35.10 4.20
670 1051 6.421202 CGTGTAGCAAAATTATCTACTCCCTC 59.579 42.308 10.86 0.00 35.10 4.30
671 1052 6.706716 GTGTAGCAAAATTATCTACTCCCTCC 59.293 42.308 10.86 0.00 35.10 4.30
672 1053 4.962155 AGCAAAATTATCTACTCCCTCCG 58.038 43.478 0.00 0.00 0.00 4.63
673 1054 4.409247 AGCAAAATTATCTACTCCCTCCGT 59.591 41.667 0.00 0.00 0.00 4.69
674 1055 5.601313 AGCAAAATTATCTACTCCCTCCGTA 59.399 40.000 0.00 0.00 0.00 4.02
675 1056 5.927115 GCAAAATTATCTACTCCCTCCGTAG 59.073 44.000 0.00 0.00 36.53 3.51
787 1187 2.291043 GGAGGGAGCAACGGAGGAA 61.291 63.158 0.00 0.00 0.00 3.36
788 1188 1.627297 GGAGGGAGCAACGGAGGAAT 61.627 60.000 0.00 0.00 0.00 3.01
837 1278 0.314935 CACAGTTTTGGATGCCGCTT 59.685 50.000 0.00 0.00 0.00 4.68
892 1347 0.868406 CACTCCAAGTCCAAACGAGC 59.132 55.000 0.00 0.00 0.00 5.03
970 1446 2.224426 ACAAATACACGGCTCAACTCCA 60.224 45.455 0.00 0.00 0.00 3.86
995 1471 2.886523 CCTGGAAACATCAAGCAACAGA 59.113 45.455 0.00 0.00 41.51 3.41
1039 1534 2.123988 ATCTCGCTCGATCGCACTCC 62.124 60.000 11.09 0.00 0.00 3.85
1057 1552 1.165907 CCTTGTGCTGAGCCGTTTCA 61.166 55.000 0.23 0.00 0.00 2.69
1154 1651 2.103143 CGCTGCTCCAGAGGTACG 59.897 66.667 0.00 0.00 32.44 3.67
1158 1655 0.382515 CTGCTCCAGAGGTACGTAGC 59.617 60.000 16.85 16.85 32.44 3.58
1165 1662 1.544691 CAGAGGTACGTAGCAACCAGT 59.455 52.381 25.28 4.62 39.09 4.00
1332 1841 2.752238 CGGTGAGCTCCTCCGTCT 60.752 66.667 27.95 0.00 44.43 4.18
1355 1869 5.618236 TGGGATTTGTTGATTTTCATGCAA 58.382 33.333 0.00 0.00 0.00 4.08
1390 1924 9.612620 CTGGTTTTCATAACTGAACTGTTAATC 57.387 33.333 7.99 0.00 41.05 1.75
1391 1925 8.286800 TGGTTTTCATAACTGAACTGTTAATCG 58.713 33.333 7.99 2.40 41.05 3.34
1392 1926 8.287503 GGTTTTCATAACTGAACTGTTAATCGT 58.712 33.333 7.99 0.00 41.05 3.73
1636 2176 2.770164 TTCTTCAGGCCTTGAGCTAC 57.230 50.000 0.00 0.00 43.05 3.58
1648 2188 3.055819 CCTTGAGCTACTGTCCTGCTAAA 60.056 47.826 0.00 2.63 37.16 1.85
1707 2268 1.444119 AAACGCATGCACCGTTGTCT 61.444 50.000 22.61 8.89 46.90 3.41
1710 2271 1.207593 GCATGCACCGTTGTCTGTC 59.792 57.895 14.21 0.00 0.00 3.51
1711 2272 1.506309 GCATGCACCGTTGTCTGTCA 61.506 55.000 14.21 0.00 0.00 3.58
1712 2273 0.514255 CATGCACCGTTGTCTGTCAG 59.486 55.000 0.00 0.00 0.00 3.51
1713 2274 0.106708 ATGCACCGTTGTCTGTCAGT 59.893 50.000 0.00 0.00 0.00 3.41
1714 2275 0.809636 TGCACCGTTGTCTGTCAGTG 60.810 55.000 0.00 0.00 0.00 3.66
1715 2276 0.810031 GCACCGTTGTCTGTCAGTGT 60.810 55.000 0.00 0.00 0.00 3.55
1716 2277 1.209128 CACCGTTGTCTGTCAGTGTC 58.791 55.000 0.00 0.00 0.00 3.67
1746 2308 0.109873 GCTGCGGCATGAATATCTGC 60.110 55.000 14.08 0.00 38.54 4.26
1761 2339 1.009675 CTGCCGCCGAAATGTATGC 60.010 57.895 0.00 0.00 0.00 3.14
1766 2344 1.597690 CCGCCGAAATGTATGCACATG 60.598 52.381 0.00 0.00 44.83 3.21
1768 2346 1.066002 GCCGAAATGTATGCACATGCT 59.934 47.619 5.31 0.00 44.83 3.79
1769 2347 2.480073 GCCGAAATGTATGCACATGCTT 60.480 45.455 5.31 1.27 44.83 3.91
1770 2348 3.772932 CCGAAATGTATGCACATGCTTT 58.227 40.909 5.31 0.00 44.83 3.51
1771 2349 4.733230 GCCGAAATGTATGCACATGCTTTA 60.733 41.667 5.31 0.00 44.83 1.85
1772 2350 4.734854 CCGAAATGTATGCACATGCTTTAC 59.265 41.667 5.31 7.78 44.83 2.01
1773 2351 5.331098 CGAAATGTATGCACATGCTTTACA 58.669 37.500 16.94 16.94 44.83 2.41
1774 2352 5.972973 CGAAATGTATGCACATGCTTTACAT 59.027 36.000 18.94 18.94 44.83 2.29
1775 2353 6.141211 CGAAATGTATGCACATGCTTTACATC 59.859 38.462 22.15 15.46 44.83 3.06
1776 2354 6.704289 AATGTATGCACATGCTTTACATCT 57.296 33.333 22.15 14.62 44.83 2.90
1777 2355 5.488645 TGTATGCACATGCTTTACATCTG 57.511 39.130 12.99 0.00 42.66 2.90
1778 2356 4.943093 TGTATGCACATGCTTTACATCTGT 59.057 37.500 12.99 0.00 42.66 3.41
1779 2357 3.835378 TGCACATGCTTTACATCTGTG 57.165 42.857 5.31 0.00 42.66 3.66
1780 2358 3.410508 TGCACATGCTTTACATCTGTGA 58.589 40.909 5.31 0.00 42.66 3.58
1781 2359 4.011698 TGCACATGCTTTACATCTGTGAT 58.988 39.130 5.31 0.00 42.66 3.06
1782 2360 4.095334 TGCACATGCTTTACATCTGTGATC 59.905 41.667 5.31 0.00 42.66 2.92
1783 2361 4.334759 GCACATGCTTTACATCTGTGATCT 59.665 41.667 5.25 0.00 36.64 2.75
1792 2370 4.462508 ACATCTGTGATCTGTGTACTGG 57.537 45.455 0.00 0.00 0.00 4.00
1829 2407 2.797156 CGATCCTGGTTTCAGATAAGCG 59.203 50.000 0.00 0.00 43.49 4.68
1830 2408 3.490933 CGATCCTGGTTTCAGATAAGCGA 60.491 47.826 0.00 0.00 43.49 4.93
1841 2419 3.003378 TCAGATAAGCGATGTACGACAGG 59.997 47.826 0.00 0.00 45.77 4.00
1850 2428 3.735208 CGATGTACGACAGGCTTCAGATT 60.735 47.826 0.00 0.00 45.77 2.40
1861 2439 2.993899 GGCTTCAGATTTCGACGAAGAA 59.006 45.455 10.61 9.64 37.63 2.52
1863 2441 3.921021 GCTTCAGATTTCGACGAAGAAGA 59.079 43.478 27.83 16.13 37.63 2.87
1864 2442 4.564769 GCTTCAGATTTCGACGAAGAAGAT 59.435 41.667 27.83 14.37 37.63 2.40
1865 2443 5.499971 GCTTCAGATTTCGACGAAGAAGATG 60.500 44.000 27.83 18.81 37.63 2.90
1866 2444 4.424626 TCAGATTTCGACGAAGAAGATGG 58.575 43.478 10.61 0.00 0.00 3.51
1867 2445 3.553511 CAGATTTCGACGAAGAAGATGGG 59.446 47.826 10.61 0.00 0.00 4.00
1869 2447 2.649331 TTCGACGAAGAAGATGGGTC 57.351 50.000 6.10 0.00 0.00 4.46
1871 2449 1.201647 TCGACGAAGAAGATGGGTCAC 59.798 52.381 0.00 0.00 0.00 3.67
1872 2450 1.067846 CGACGAAGAAGATGGGTCACA 60.068 52.381 0.00 0.00 0.00 3.58
1873 2451 2.611518 GACGAAGAAGATGGGTCACAG 58.388 52.381 0.00 0.00 0.00 3.66
1874 2452 1.276421 ACGAAGAAGATGGGTCACAGG 59.724 52.381 0.00 0.00 0.00 4.00
1875 2453 1.406069 CGAAGAAGATGGGTCACAGGG 60.406 57.143 0.00 0.00 0.00 4.45
1876 2454 1.630878 GAAGAAGATGGGTCACAGGGT 59.369 52.381 0.00 0.00 0.00 4.34
1881 2459 0.107165 GATGGGTCACAGGGTTAGCC 60.107 60.000 0.00 0.00 0.00 3.93
1898 2476 2.179517 CGTGAGGCCGTGACTCTC 59.820 66.667 0.00 4.09 38.75 3.20
1916 2494 2.499289 TCTCACAGGAGAGAATTCAGGC 59.501 50.000 8.44 0.00 45.12 4.85
1918 2496 0.107945 ACAGGAGAGAATTCAGGCGC 60.108 55.000 8.44 0.00 0.00 6.53
1922 2500 2.897350 GAGAATTCAGGCGCCCCG 60.897 66.667 26.15 15.87 35.76 5.73
1926 2504 4.778143 ATTCAGGCGCCCCGACAC 62.778 66.667 26.15 0.00 37.34 3.67
1932 2510 3.484547 GCGCCCCGACACGTTAAG 61.485 66.667 0.00 0.00 0.00 1.85
1933 2511 2.259204 CGCCCCGACACGTTAAGA 59.741 61.111 0.00 0.00 0.00 2.10
1934 2512 1.153706 CGCCCCGACACGTTAAGAT 60.154 57.895 0.00 0.00 0.00 2.40
1935 2513 1.143969 CGCCCCGACACGTTAAGATC 61.144 60.000 0.00 0.00 0.00 2.75
1936 2514 0.808847 GCCCCGACACGTTAAGATCC 60.809 60.000 0.00 0.00 0.00 3.36
1937 2515 0.822164 CCCCGACACGTTAAGATCCT 59.178 55.000 0.00 0.00 0.00 3.24
1938 2516 2.026641 CCCCGACACGTTAAGATCCTA 58.973 52.381 0.00 0.00 0.00 2.94
1939 2517 2.428171 CCCCGACACGTTAAGATCCTAA 59.572 50.000 0.00 0.00 0.00 2.69
1940 2518 3.119029 CCCCGACACGTTAAGATCCTAAA 60.119 47.826 0.00 0.00 0.00 1.85
1941 2519 4.497300 CCCGACACGTTAAGATCCTAAAA 58.503 43.478 0.00 0.00 0.00 1.52
1942 2520 5.114081 CCCGACACGTTAAGATCCTAAAAT 58.886 41.667 0.00 0.00 0.00 1.82
1943 2521 5.006358 CCCGACACGTTAAGATCCTAAAATG 59.994 44.000 0.00 0.00 0.00 2.32
1944 2522 5.579511 CCGACACGTTAAGATCCTAAAATGT 59.420 40.000 0.00 2.54 0.00 2.71
1945 2523 6.091713 CCGACACGTTAAGATCCTAAAATGTT 59.908 38.462 0.00 0.00 0.00 2.71
1946 2524 6.953743 CGACACGTTAAGATCCTAAAATGTTG 59.046 38.462 0.00 3.72 0.00 3.33
1947 2525 7.141100 ACACGTTAAGATCCTAAAATGTTGG 57.859 36.000 0.00 0.00 0.00 3.77
1948 2526 6.713450 ACACGTTAAGATCCTAAAATGTTGGT 59.287 34.615 0.00 0.00 0.00 3.67
1949 2527 7.094933 ACACGTTAAGATCCTAAAATGTTGGTC 60.095 37.037 0.00 0.00 0.00 4.02
1950 2528 6.091713 ACGTTAAGATCCTAAAATGTTGGTCG 59.908 38.462 0.00 0.00 0.00 4.79
1951 2529 6.091713 CGTTAAGATCCTAAAATGTTGGTCGT 59.908 38.462 0.00 0.00 0.00 4.34
1952 2530 7.360607 CGTTAAGATCCTAAAATGTTGGTCGTT 60.361 37.037 0.00 0.00 0.00 3.85
1953 2531 6.894339 AAGATCCTAAAATGTTGGTCGTTT 57.106 33.333 0.00 0.00 36.91 3.60
1954 2532 6.254281 AGATCCTAAAATGTTGGTCGTTTG 57.746 37.500 0.00 0.00 35.69 2.93
1955 2533 5.768164 AGATCCTAAAATGTTGGTCGTTTGT 59.232 36.000 0.00 0.00 35.69 2.83
1956 2534 5.838531 TCCTAAAATGTTGGTCGTTTGTT 57.161 34.783 0.00 0.00 35.69 2.83
1957 2535 6.210287 TCCTAAAATGTTGGTCGTTTGTTT 57.790 33.333 0.00 0.00 35.69 2.83
1958 2536 7.330900 TCCTAAAATGTTGGTCGTTTGTTTA 57.669 32.000 0.00 0.00 35.69 2.01
1959 2537 7.194962 TCCTAAAATGTTGGTCGTTTGTTTAC 58.805 34.615 0.00 0.00 35.69 2.01
1960 2538 6.973474 CCTAAAATGTTGGTCGTTTGTTTACA 59.027 34.615 0.00 0.00 35.69 2.41
1961 2539 6.635166 AAAATGTTGGTCGTTTGTTTACAC 57.365 33.333 0.00 0.00 35.69 2.90
1962 2540 5.570234 AATGTTGGTCGTTTGTTTACACT 57.430 34.783 0.00 0.00 0.00 3.55
1963 2541 6.680874 AATGTTGGTCGTTTGTTTACACTA 57.319 33.333 0.00 0.00 0.00 2.74
1964 2542 5.721876 TGTTGGTCGTTTGTTTACACTAG 57.278 39.130 0.00 0.00 0.00 2.57
1965 2543 5.417811 TGTTGGTCGTTTGTTTACACTAGA 58.582 37.500 0.00 0.00 0.00 2.43
1966 2544 5.521010 TGTTGGTCGTTTGTTTACACTAGAG 59.479 40.000 0.00 0.00 0.00 2.43
1967 2545 4.624015 TGGTCGTTTGTTTACACTAGAGG 58.376 43.478 0.00 0.00 0.00 3.69
1968 2546 4.099881 TGGTCGTTTGTTTACACTAGAGGT 59.900 41.667 0.00 0.00 0.00 3.85
1969 2547 5.301551 TGGTCGTTTGTTTACACTAGAGGTA 59.698 40.000 0.00 0.00 0.00 3.08
1970 2548 5.631096 GGTCGTTTGTTTACACTAGAGGTAC 59.369 44.000 0.00 0.00 0.00 3.34
1971 2549 6.208644 GTCGTTTGTTTACACTAGAGGTACA 58.791 40.000 0.00 0.00 0.00 2.90
1972 2550 6.865205 GTCGTTTGTTTACACTAGAGGTACAT 59.135 38.462 0.00 0.00 0.00 2.29
1973 2551 8.023128 GTCGTTTGTTTACACTAGAGGTACATA 58.977 37.037 0.00 0.00 0.00 2.29
1974 2552 8.575589 TCGTTTGTTTACACTAGAGGTACATAA 58.424 33.333 0.00 0.00 0.00 1.90
1975 2553 9.195411 CGTTTGTTTACACTAGAGGTACATAAA 57.805 33.333 0.00 0.78 0.00 1.40
1977 2555 9.492973 TTTGTTTACACTAGAGGTACATAAACC 57.507 33.333 0.00 0.00 40.06 3.27
2007 2585 7.835634 GGTAACTTGAAACAAATCCAAACAA 57.164 32.000 0.00 0.00 0.00 2.83
2008 2586 7.680982 GGTAACTTGAAACAAATCCAAACAAC 58.319 34.615 0.00 0.00 0.00 3.32
2009 2587 7.547722 GGTAACTTGAAACAAATCCAAACAACT 59.452 33.333 0.00 0.00 0.00 3.16
2010 2588 9.575783 GTAACTTGAAACAAATCCAAACAACTA 57.424 29.630 0.00 0.00 0.00 2.24
2011 2589 8.702163 AACTTGAAACAAATCCAAACAACTAG 57.298 30.769 0.00 0.00 0.00 2.57
2012 2590 6.756542 ACTTGAAACAAATCCAAACAACTAGC 59.243 34.615 0.00 0.00 0.00 3.42
2013 2591 5.596845 TGAAACAAATCCAAACAACTAGCC 58.403 37.500 0.00 0.00 0.00 3.93
2014 2592 4.600692 AACAAATCCAAACAACTAGCCC 57.399 40.909 0.00 0.00 0.00 5.19
2015 2593 3.571590 ACAAATCCAAACAACTAGCCCA 58.428 40.909 0.00 0.00 0.00 5.36
2016 2594 4.159557 ACAAATCCAAACAACTAGCCCAT 58.840 39.130 0.00 0.00 0.00 4.00
2017 2595 4.021192 ACAAATCCAAACAACTAGCCCATG 60.021 41.667 0.00 0.00 0.00 3.66
2018 2596 3.737559 ATCCAAACAACTAGCCCATGA 57.262 42.857 0.00 0.00 0.00 3.07
2019 2597 3.517296 TCCAAACAACTAGCCCATGAA 57.483 42.857 0.00 0.00 0.00 2.57
2020 2598 3.153919 TCCAAACAACTAGCCCATGAAC 58.846 45.455 0.00 0.00 0.00 3.18
2021 2599 3.157087 CCAAACAACTAGCCCATGAACT 58.843 45.455 0.00 0.00 0.00 3.01
2022 2600 3.573967 CCAAACAACTAGCCCATGAACTT 59.426 43.478 0.00 0.00 0.00 2.66
2023 2601 4.549458 CAAACAACTAGCCCATGAACTTG 58.451 43.478 0.00 0.00 0.00 3.16
2024 2602 3.788227 ACAACTAGCCCATGAACTTGA 57.212 42.857 0.00 0.00 0.00 3.02
2025 2603 3.679389 ACAACTAGCCCATGAACTTGAG 58.321 45.455 0.00 0.00 0.00 3.02
2026 2604 3.327757 ACAACTAGCCCATGAACTTGAGA 59.672 43.478 0.00 0.00 0.00 3.27
2027 2605 4.018960 ACAACTAGCCCATGAACTTGAGAT 60.019 41.667 0.00 0.00 0.00 2.75
2028 2606 4.414337 ACTAGCCCATGAACTTGAGATC 57.586 45.455 0.00 0.00 0.00 2.75
2029 2607 2.725221 AGCCCATGAACTTGAGATCC 57.275 50.000 0.00 0.00 0.00 3.36
2030 2608 1.134280 AGCCCATGAACTTGAGATCCG 60.134 52.381 0.00 0.00 0.00 4.18
2031 2609 1.134401 GCCCATGAACTTGAGATCCGA 60.134 52.381 0.00 0.00 0.00 4.55
2032 2610 2.831333 CCCATGAACTTGAGATCCGAG 58.169 52.381 0.00 0.00 0.00 4.63
2033 2611 2.169352 CCCATGAACTTGAGATCCGAGT 59.831 50.000 0.00 0.00 41.25 4.18
2041 2619 5.869753 ACTTGAGATCCGAGTTCAATTTG 57.130 39.130 0.00 0.00 36.04 2.32
2042 2620 4.697352 ACTTGAGATCCGAGTTCAATTTGG 59.303 41.667 0.00 0.00 36.04 3.28
2043 2621 4.286297 TGAGATCCGAGTTCAATTTGGT 57.714 40.909 0.00 0.00 0.00 3.67
2044 2622 4.253685 TGAGATCCGAGTTCAATTTGGTC 58.746 43.478 0.00 0.00 0.00 4.02
2045 2623 3.610911 AGATCCGAGTTCAATTTGGTCC 58.389 45.455 0.00 0.00 0.00 4.46
2046 2624 2.940994 TCCGAGTTCAATTTGGTCCA 57.059 45.000 0.00 0.00 0.00 4.02
2047 2625 3.216187 TCCGAGTTCAATTTGGTCCAA 57.784 42.857 0.00 0.00 0.00 3.53
2048 2626 3.556999 TCCGAGTTCAATTTGGTCCAAA 58.443 40.909 19.29 19.29 37.75 3.28
2049 2627 3.954904 TCCGAGTTCAATTTGGTCCAAAA 59.045 39.130 20.76 2.01 36.90 2.44
2050 2628 4.586841 TCCGAGTTCAATTTGGTCCAAAAT 59.413 37.500 20.76 10.19 36.90 1.82
2051 2629 4.923281 CCGAGTTCAATTTGGTCCAAAATC 59.077 41.667 20.76 5.93 36.90 2.17
2052 2630 5.508825 CCGAGTTCAATTTGGTCCAAAATCA 60.509 40.000 20.76 0.00 36.90 2.57
2053 2631 5.402270 CGAGTTCAATTTGGTCCAAAATCAC 59.598 40.000 20.76 14.16 36.90 3.06
2054 2632 5.610398 AGTTCAATTTGGTCCAAAATCACC 58.390 37.500 20.76 9.32 36.90 4.02
2055 2633 5.366477 AGTTCAATTTGGTCCAAAATCACCT 59.634 36.000 20.76 11.25 36.90 4.00
2056 2634 6.553100 AGTTCAATTTGGTCCAAAATCACCTA 59.447 34.615 20.76 0.00 36.90 3.08
2057 2635 6.588719 TCAATTTGGTCCAAAATCACCTAG 57.411 37.500 20.76 0.44 36.90 3.02
2058 2636 5.480073 TCAATTTGGTCCAAAATCACCTAGG 59.520 40.000 20.76 7.41 36.90 3.02
2059 2637 2.507407 TGGTCCAAAATCACCTAGGC 57.493 50.000 9.30 0.00 33.36 3.93
2060 2638 1.339631 TGGTCCAAAATCACCTAGGCG 60.340 52.381 9.30 0.00 33.36 5.52
2061 2639 0.733150 GTCCAAAATCACCTAGGCGC 59.267 55.000 9.30 0.00 0.00 6.53
2062 2640 0.742990 TCCAAAATCACCTAGGCGCG 60.743 55.000 9.30 0.00 0.00 6.86
2063 2641 0.742990 CCAAAATCACCTAGGCGCGA 60.743 55.000 12.10 3.37 0.00 5.87
2064 2642 0.373716 CAAAATCACCTAGGCGCGAC 59.626 55.000 12.10 7.34 0.00 5.19
2065 2643 0.743345 AAAATCACCTAGGCGCGACC 60.743 55.000 9.25 10.36 39.61 4.79
2066 2644 1.895020 AAATCACCTAGGCGCGACCA 61.895 55.000 9.25 0.00 43.14 4.02
2067 2645 2.573609 AATCACCTAGGCGCGACCAC 62.574 60.000 9.25 0.00 43.14 4.16
2070 2648 4.430765 CCTAGGCGCGACCACGTT 62.431 66.667 9.25 0.00 43.14 3.99
2071 2649 3.179265 CTAGGCGCGACCACGTTG 61.179 66.667 9.25 0.00 43.14 4.10
2072 2650 3.620300 CTAGGCGCGACCACGTTGA 62.620 63.158 9.25 0.00 43.14 3.18
2073 2651 3.620300 TAGGCGCGACCACGTTGAG 62.620 63.158 9.25 0.00 43.14 3.02
2076 2654 3.036084 CGCGACCACGTTGAGCTT 61.036 61.111 0.00 0.00 41.98 3.74
2077 2655 2.594962 CGCGACCACGTTGAGCTTT 61.595 57.895 0.00 0.00 41.98 3.51
2078 2656 1.647084 GCGACCACGTTGAGCTTTT 59.353 52.632 0.00 0.00 41.98 2.27
2079 2657 0.028902 GCGACCACGTTGAGCTTTTT 59.971 50.000 0.00 0.00 41.98 1.94
2100 2678 4.497473 TTTTTCGGCTGTCCATAAAGTG 57.503 40.909 0.00 0.00 0.00 3.16
2111 2689 1.410153 CCATAAAGTGGGGCAGATTGC 59.590 52.381 0.00 0.00 44.79 3.56
2120 2698 3.348236 GCAGATTGCCGGCCATAG 58.652 61.111 26.77 15.53 37.42 2.23
2121 2699 1.227943 GCAGATTGCCGGCCATAGA 60.228 57.895 26.77 0.09 37.42 1.98
2122 2700 1.233285 GCAGATTGCCGGCCATAGAG 61.233 60.000 26.77 12.57 37.42 2.43
2123 2701 0.394192 CAGATTGCCGGCCATAGAGA 59.606 55.000 26.77 0.00 0.00 3.10
2124 2702 0.683973 AGATTGCCGGCCATAGAGAG 59.316 55.000 26.77 0.00 0.00 3.20
2125 2703 0.681733 GATTGCCGGCCATAGAGAGA 59.318 55.000 26.77 0.00 0.00 3.10
2126 2704 1.070758 GATTGCCGGCCATAGAGAGAA 59.929 52.381 26.77 8.43 0.00 2.87
2127 2705 0.908910 TTGCCGGCCATAGAGAGAAA 59.091 50.000 26.77 3.84 0.00 2.52
2128 2706 0.908910 TGCCGGCCATAGAGAGAAAA 59.091 50.000 26.77 0.00 0.00 2.29
2133 2711 4.199310 CCGGCCATAGAGAGAAAAATTCA 58.801 43.478 2.24 0.00 0.00 2.57
2229 2807 4.441415 CGGATCGTTCACTTTAGCTACATC 59.559 45.833 0.00 0.00 0.00 3.06
2377 2958 8.713708 TTTTTGATTGACCCCTATTTTGAGTA 57.286 30.769 0.00 0.00 0.00 2.59
2429 3011 6.517374 CGTTACGTGTTTTCTTATTAGGTTGC 59.483 38.462 0.00 0.00 0.00 4.17
2451 3034 5.473162 TGCTTATGTGTGTATTTGCTTCTGT 59.527 36.000 0.00 0.00 0.00 3.41
2484 3067 7.147880 TGTCGGTTTTTATGGGTATATTTTGGG 60.148 37.037 0.00 0.00 0.00 4.12
2618 3236 7.402054 TCTGTGAAAATTCCACTACCATATGT 58.598 34.615 1.24 0.00 35.66 2.29
2811 3453 4.706476 TCTGAAGGGTAATGCCAAAATCAG 59.294 41.667 0.00 0.00 39.65 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.111277 GCTCCTCCTCCTCACTCTTC 58.889 60.000 0.00 0.00 0.00 2.87
1 2 0.682855 CGCTCCTCCTCCTCACTCTT 60.683 60.000 0.00 0.00 0.00 2.85
4 5 1.379309 GTCGCTCCTCCTCCTCACT 60.379 63.158 0.00 0.00 0.00 3.41
5 6 2.766400 CGTCGCTCCTCCTCCTCAC 61.766 68.421 0.00 0.00 0.00 3.51
6 7 2.438614 CGTCGCTCCTCCTCCTCA 60.439 66.667 0.00 0.00 0.00 3.86
48 49 1.962822 CGCCATGCATGCCTCGTAT 60.963 57.895 21.69 0.00 0.00 3.06
52 53 2.596631 ATCCGCCATGCATGCCTC 60.597 61.111 21.69 10.93 0.00 4.70
117 118 2.517875 TACTCTAGGGACGGCGGC 60.518 66.667 13.24 8.60 0.00 6.53
119 120 1.822613 TGCTACTCTAGGGACGGCG 60.823 63.158 4.80 4.80 0.00 6.46
123 124 1.671845 CTCACGTGCTACTCTAGGGAC 59.328 57.143 11.67 0.00 0.00 4.46
128 129 1.271762 ACCCACTCACGTGCTACTCTA 60.272 52.381 11.67 0.00 39.86 2.43
130 131 0.388649 CACCCACTCACGTGCTACTC 60.389 60.000 11.67 0.00 39.86 2.59
131 132 1.666011 CACCCACTCACGTGCTACT 59.334 57.895 11.67 0.00 39.86 2.57
132 133 1.374252 CCACCCACTCACGTGCTAC 60.374 63.158 11.67 0.00 39.86 3.58
133 134 2.579657 CCCACCCACTCACGTGCTA 61.580 63.158 11.67 0.00 39.86 3.49
188 238 2.441348 TCGAGGTAGGCCGCATCA 60.441 61.111 13.67 1.14 40.50 3.07
240 290 2.103538 GAGGTATTCGCCGTCGCA 59.896 61.111 0.00 0.00 35.26 5.10
305 362 4.392166 TGGGCCTAGCGTGGAGGA 62.392 66.667 4.53 0.00 35.99 3.71
306 363 3.854669 CTGGGCCTAGCGTGGAGG 61.855 72.222 1.92 0.00 37.12 4.30
307 364 3.854669 CCTGGGCCTAGCGTGGAG 61.855 72.222 11.38 0.00 0.00 3.86
363 420 4.451150 GGCAGTGGCGATGTCGGA 62.451 66.667 0.00 0.00 42.47 4.55
383 440 2.593436 CAGGGGAACGCCGTGTTT 60.593 61.111 0.00 0.00 44.92 2.83
446 503 0.878523 CTTTGGCGTCCTCGTTGTCA 60.879 55.000 0.00 0.00 39.49 3.58
450 507 2.032071 CCCTTTGGCGTCCTCGTT 59.968 61.111 0.00 0.00 39.49 3.85
470 527 1.865788 TAAACTACGAGGTGGCGCGT 61.866 55.000 8.43 0.00 43.86 6.01
531 596 1.823169 TAAAGCCGGCCACGAAGACT 61.823 55.000 26.15 0.00 44.60 3.24
533 598 0.952010 GTTAAAGCCGGCCACGAAGA 60.952 55.000 26.15 0.00 44.60 2.87
630 1011 1.523758 ACACGAGGCATTTGTCCTTC 58.476 50.000 0.00 0.00 33.24 3.46
662 1043 5.338219 GCTGATAGATACTACGGAGGGAGTA 60.338 48.000 0.00 0.00 35.18 2.59
663 1044 4.566070 GCTGATAGATACTACGGAGGGAGT 60.566 50.000 0.00 0.00 0.00 3.85
664 1045 3.942748 GCTGATAGATACTACGGAGGGAG 59.057 52.174 0.00 0.00 0.00 4.30
665 1046 3.329814 TGCTGATAGATACTACGGAGGGA 59.670 47.826 0.00 0.00 0.00 4.20
666 1047 3.440872 GTGCTGATAGATACTACGGAGGG 59.559 52.174 0.00 0.00 0.00 4.30
667 1048 4.155099 CAGTGCTGATAGATACTACGGAGG 59.845 50.000 0.00 0.00 0.00 4.30
668 1049 4.757657 ACAGTGCTGATAGATACTACGGAG 59.242 45.833 6.17 0.00 0.00 4.63
669 1050 4.715713 ACAGTGCTGATAGATACTACGGA 58.284 43.478 6.17 0.00 0.00 4.69
670 1051 5.215903 CAACAGTGCTGATAGATACTACGG 58.784 45.833 6.17 0.00 0.00 4.02
671 1052 5.683302 CACAACAGTGCTGATAGATACTACG 59.317 44.000 6.17 0.00 0.00 3.51
787 1187 1.209019 TGTTTGTTTGTTGCAGGGCAT 59.791 42.857 0.00 0.00 38.76 4.40
788 1188 0.610174 TGTTTGTTTGTTGCAGGGCA 59.390 45.000 0.00 0.00 36.47 5.36
794 1197 5.500825 GTTTGGATGATGTTTGTTTGTTGC 58.499 37.500 0.00 0.00 0.00 4.17
837 1278 2.048222 CAGAGCACGCTTTCCGGA 60.048 61.111 0.00 0.00 42.52 5.14
899 1368 4.877619 TTGGGTGCAAACCGCGGA 62.878 61.111 35.90 5.52 46.97 5.54
902 1371 1.885388 GGTTTTGGGTGCAAACCGC 60.885 57.895 1.61 0.00 42.88 5.68
970 1446 1.202758 TGCTTGATGTTTCCAGGACGT 60.203 47.619 0.00 0.00 0.00 4.34
981 1457 1.242076 GGCTGTCTGTTGCTTGATGT 58.758 50.000 0.00 0.00 0.00 3.06
995 1471 4.437587 GATGGGCTGGCTGGCTGT 62.438 66.667 17.06 6.61 41.48 4.40
1039 1534 0.236711 CTGAAACGGCTCAGCACAAG 59.763 55.000 0.00 0.00 36.67 3.16
1057 1552 3.454587 TTCGCCGTGGTCTTGTGCT 62.455 57.895 0.00 0.00 0.00 4.40
1154 1651 2.766828 AGTGGATCCTACTGGTTGCTAC 59.233 50.000 14.23 0.00 34.23 3.58
1158 1655 4.020218 TGAAGAAGTGGATCCTACTGGTTG 60.020 45.833 14.23 0.00 34.23 3.77
1165 1662 5.333581 TGAACTCTGAAGAAGTGGATCCTA 58.666 41.667 14.23 0.00 0.00 2.94
1332 1841 5.224821 TGCATGAAAATCAACAAATCCCA 57.775 34.783 0.00 0.00 0.00 4.37
1355 1869 5.765182 CAGTTATGAAAACCAGAGTCCAACT 59.235 40.000 0.00 0.00 0.00 3.16
1391 1925 3.181967 CTCGCCAGCTGCACGTAC 61.182 66.667 21.84 2.13 41.33 3.67
1610 2150 2.044946 GGCCTGAAGAATGCCGGT 60.045 61.111 1.90 0.00 35.08 5.28
1636 2176 4.681942 GCGTATCATACTTTAGCAGGACAG 59.318 45.833 0.00 0.00 0.00 3.51
1648 2188 1.209128 GCAAGCGTGCGTATCATACT 58.791 50.000 9.33 0.00 41.93 2.12
1691 2252 2.174107 CAGACAACGGTGCATGCG 59.826 61.111 14.09 0.76 0.00 4.73
1693 2254 0.514255 CTGACAGACAACGGTGCATG 59.486 55.000 0.00 1.33 0.00 4.06
1699 2260 0.600255 GGGACACTGACAGACAACGG 60.600 60.000 10.08 0.00 0.00 4.44
1710 2271 1.605710 CAGCAGTTTCTTGGGACACTG 59.394 52.381 7.64 7.64 46.90 3.66
1711 2272 1.972872 CAGCAGTTTCTTGGGACACT 58.027 50.000 0.00 0.00 39.29 3.55
1712 2273 0.312102 GCAGCAGTTTCTTGGGACAC 59.688 55.000 0.00 0.00 39.29 3.67
1713 2274 1.165907 CGCAGCAGTTTCTTGGGACA 61.166 55.000 0.00 0.00 0.00 4.02
1714 2275 1.576421 CGCAGCAGTTTCTTGGGAC 59.424 57.895 0.00 0.00 0.00 4.46
1715 2276 1.600636 CCGCAGCAGTTTCTTGGGA 60.601 57.895 0.00 0.00 0.00 4.37
1716 2277 2.956987 CCGCAGCAGTTTCTTGGG 59.043 61.111 0.00 0.00 0.00 4.12
1746 2308 0.662619 ATGTGCATACATTTCGGCGG 59.337 50.000 7.21 0.00 45.01 6.13
1766 2344 6.035435 CAGTACACAGATCACAGATGTAAAGC 59.965 42.308 0.00 0.00 0.00 3.51
1768 2346 6.210584 TCCAGTACACAGATCACAGATGTAAA 59.789 38.462 0.00 0.00 0.00 2.01
1769 2347 5.714806 TCCAGTACACAGATCACAGATGTAA 59.285 40.000 0.00 0.00 0.00 2.41
1770 2348 5.261216 TCCAGTACACAGATCACAGATGTA 58.739 41.667 0.00 0.00 0.00 2.29
1771 2349 4.089361 TCCAGTACACAGATCACAGATGT 58.911 43.478 0.00 0.00 0.00 3.06
1772 2350 4.725790 TCCAGTACACAGATCACAGATG 57.274 45.455 0.00 0.00 0.00 2.90
1773 2351 7.423844 TTTATCCAGTACACAGATCACAGAT 57.576 36.000 0.00 0.00 0.00 2.90
1774 2352 6.850752 TTTATCCAGTACACAGATCACAGA 57.149 37.500 0.00 0.00 0.00 3.41
1775 2353 7.063898 CAGTTTTATCCAGTACACAGATCACAG 59.936 40.741 0.00 0.00 0.00 3.66
1776 2354 6.873605 CAGTTTTATCCAGTACACAGATCACA 59.126 38.462 0.00 0.00 0.00 3.58
1777 2355 7.097192 TCAGTTTTATCCAGTACACAGATCAC 58.903 38.462 0.00 0.00 0.00 3.06
1778 2356 7.239763 TCAGTTTTATCCAGTACACAGATCA 57.760 36.000 0.00 0.00 0.00 2.92
1779 2357 6.758886 CCTCAGTTTTATCCAGTACACAGATC 59.241 42.308 0.00 0.00 0.00 2.75
1780 2358 6.352222 CCCTCAGTTTTATCCAGTACACAGAT 60.352 42.308 0.00 0.00 0.00 2.90
1781 2359 5.046591 CCCTCAGTTTTATCCAGTACACAGA 60.047 44.000 0.00 0.00 0.00 3.41
1782 2360 5.178797 CCCTCAGTTTTATCCAGTACACAG 58.821 45.833 0.00 0.00 0.00 3.66
1783 2361 4.564821 GCCCTCAGTTTTATCCAGTACACA 60.565 45.833 0.00 0.00 0.00 3.72
1792 2370 3.070302 AGGATCGAGCCCTCAGTTTTATC 59.930 47.826 17.84 0.00 0.00 1.75
1829 2407 2.941453 TCTGAAGCCTGTCGTACATC 57.059 50.000 0.00 0.00 0.00 3.06
1830 2408 3.895232 AATCTGAAGCCTGTCGTACAT 57.105 42.857 0.00 0.00 0.00 2.29
1841 2419 3.921021 TCTTCTTCGTCGAAATCTGAAGC 59.079 43.478 21.17 0.00 38.14 3.86
1850 2428 1.890489 TGACCCATCTTCTTCGTCGAA 59.110 47.619 7.57 7.57 0.00 3.71
1861 2439 0.912486 GCTAACCCTGTGACCCATCT 59.088 55.000 0.00 0.00 0.00 2.90
1863 2441 1.910580 CGGCTAACCCTGTGACCCAT 61.911 60.000 0.00 0.00 0.00 4.00
1864 2442 2.589157 CGGCTAACCCTGTGACCCA 61.589 63.158 0.00 0.00 0.00 4.51
1865 2443 2.267961 CGGCTAACCCTGTGACCC 59.732 66.667 0.00 0.00 0.00 4.46
1866 2444 1.375523 CACGGCTAACCCTGTGACC 60.376 63.158 0.00 0.00 39.13 4.02
1867 2445 0.389948 CTCACGGCTAACCCTGTGAC 60.390 60.000 0.01 0.00 40.04 3.67
1869 2447 1.079127 CCTCACGGCTAACCCTGTG 60.079 63.158 0.00 0.00 38.57 3.66
1881 2459 2.179517 GAGAGTCACGGCCTCACG 59.820 66.667 0.00 0.00 40.31 4.35
1896 2474 2.738000 CGCCTGAATTCTCTCCTGTGAG 60.738 54.545 7.05 0.00 40.17 3.51
1897 2475 1.205655 CGCCTGAATTCTCTCCTGTGA 59.794 52.381 7.05 0.00 0.00 3.58
1898 2476 1.649664 CGCCTGAATTCTCTCCTGTG 58.350 55.000 7.05 0.00 0.00 3.66
1903 2481 1.524849 GGGGCGCCTGAATTCTCTC 60.525 63.158 28.56 4.74 0.00 3.20
1905 2483 2.897350 CGGGGCGCCTGAATTCTC 60.897 66.667 28.56 6.44 29.82 2.87
1916 2494 1.143969 GATCTTAACGTGTCGGGGCG 61.144 60.000 0.00 0.00 0.00 6.13
1918 2496 0.822164 AGGATCTTAACGTGTCGGGG 59.178 55.000 0.00 0.00 0.00 5.73
1922 2500 7.094933 ACCAACATTTTAGGATCTTAACGTGTC 60.095 37.037 11.88 0.00 0.00 3.67
1926 2504 6.091713 ACGACCAACATTTTAGGATCTTAACG 59.908 38.462 0.00 0.00 0.00 3.18
1932 2510 6.009115 ACAAACGACCAACATTTTAGGATC 57.991 37.500 0.00 0.00 0.00 3.36
1933 2511 6.399639 AACAAACGACCAACATTTTAGGAT 57.600 33.333 0.00 0.00 0.00 3.24
1934 2512 5.838531 AACAAACGACCAACATTTTAGGA 57.161 34.783 0.00 0.00 0.00 2.94
1935 2513 6.973474 TGTAAACAAACGACCAACATTTTAGG 59.027 34.615 0.00 0.00 0.00 2.69
1936 2514 7.698970 AGTGTAAACAAACGACCAACATTTTAG 59.301 33.333 0.00 0.00 0.00 1.85
1937 2515 7.536855 AGTGTAAACAAACGACCAACATTTTA 58.463 30.769 0.00 0.00 0.00 1.52
1938 2516 6.391537 AGTGTAAACAAACGACCAACATTTT 58.608 32.000 0.00 0.00 0.00 1.82
1939 2517 5.956642 AGTGTAAACAAACGACCAACATTT 58.043 33.333 0.00 0.00 0.00 2.32
1940 2518 5.570234 AGTGTAAACAAACGACCAACATT 57.430 34.783 0.00 0.00 0.00 2.71
1941 2519 6.050432 TCTAGTGTAAACAAACGACCAACAT 58.950 36.000 0.00 0.00 0.00 2.71
1942 2520 5.417811 TCTAGTGTAAACAAACGACCAACA 58.582 37.500 0.00 0.00 0.00 3.33
1943 2521 5.050567 CCTCTAGTGTAAACAAACGACCAAC 60.051 44.000 0.00 0.00 0.00 3.77
1944 2522 5.051816 CCTCTAGTGTAAACAAACGACCAA 58.948 41.667 0.00 0.00 0.00 3.67
1945 2523 4.099881 ACCTCTAGTGTAAACAAACGACCA 59.900 41.667 0.00 0.00 0.00 4.02
1946 2524 4.625028 ACCTCTAGTGTAAACAAACGACC 58.375 43.478 0.00 0.00 0.00 4.79
1947 2525 6.208644 TGTACCTCTAGTGTAAACAAACGAC 58.791 40.000 0.00 0.00 0.00 4.34
1948 2526 6.389830 TGTACCTCTAGTGTAAACAAACGA 57.610 37.500 0.00 0.00 0.00 3.85
1949 2527 8.746922 TTATGTACCTCTAGTGTAAACAAACG 57.253 34.615 0.00 0.00 0.00 3.60
1951 2529 9.492973 GGTTTATGTACCTCTAGTGTAAACAAA 57.507 33.333 12.90 2.87 35.75 2.83
1952 2530 8.873144 AGGTTTATGTACCTCTAGTGTAAACAA 58.127 33.333 12.90 0.00 45.44 2.83
1953 2531 8.308931 CAGGTTTATGTACCTCTAGTGTAAACA 58.691 37.037 12.90 5.84 45.44 2.83
1954 2532 7.277319 GCAGGTTTATGTACCTCTAGTGTAAAC 59.723 40.741 0.00 0.00 45.44 2.01
1955 2533 7.325694 GCAGGTTTATGTACCTCTAGTGTAAA 58.674 38.462 0.00 0.00 45.44 2.01
1956 2534 6.405065 CGCAGGTTTATGTACCTCTAGTGTAA 60.405 42.308 0.00 0.00 45.44 2.41
1957 2535 5.066893 CGCAGGTTTATGTACCTCTAGTGTA 59.933 44.000 0.00 0.00 45.44 2.90
1958 2536 4.142227 CGCAGGTTTATGTACCTCTAGTGT 60.142 45.833 0.00 0.00 45.44 3.55
1959 2537 4.097437 TCGCAGGTTTATGTACCTCTAGTG 59.903 45.833 0.00 0.00 45.44 2.74
1960 2538 4.275810 TCGCAGGTTTATGTACCTCTAGT 58.724 43.478 0.00 0.00 45.44 2.57
1961 2539 4.261656 CCTCGCAGGTTTATGTACCTCTAG 60.262 50.000 0.00 0.00 45.44 2.43
1962 2540 3.635373 CCTCGCAGGTTTATGTACCTCTA 59.365 47.826 0.00 0.00 45.44 2.43
1963 2541 2.431057 CCTCGCAGGTTTATGTACCTCT 59.569 50.000 0.00 0.00 45.44 3.69
1964 2542 2.822764 CCTCGCAGGTTTATGTACCTC 58.177 52.381 0.00 0.00 45.44 3.85
1976 2554 2.489971 TGTTTCAAGTTACCTCGCAGG 58.510 47.619 1.16 1.16 42.49 4.85
1977 2555 4.545823 TTTGTTTCAAGTTACCTCGCAG 57.454 40.909 0.00 0.00 0.00 5.18
1978 2556 4.023536 GGATTTGTTTCAAGTTACCTCGCA 60.024 41.667 0.00 0.00 0.00 5.10
1979 2557 4.023536 TGGATTTGTTTCAAGTTACCTCGC 60.024 41.667 0.00 0.00 0.00 5.03
1980 2558 5.682943 TGGATTTGTTTCAAGTTACCTCG 57.317 39.130 0.00 0.00 0.00 4.63
1981 2559 7.262048 TGTTTGGATTTGTTTCAAGTTACCTC 58.738 34.615 0.00 0.00 0.00 3.85
1982 2560 7.176589 TGTTTGGATTTGTTTCAAGTTACCT 57.823 32.000 0.00 0.00 0.00 3.08
1983 2561 7.547722 AGTTGTTTGGATTTGTTTCAAGTTACC 59.452 33.333 0.00 0.00 0.00 2.85
1984 2562 8.474006 AGTTGTTTGGATTTGTTTCAAGTTAC 57.526 30.769 0.00 0.00 0.00 2.50
1985 2563 9.796120 CTAGTTGTTTGGATTTGTTTCAAGTTA 57.204 29.630 0.00 0.00 0.00 2.24
1986 2564 7.277760 GCTAGTTGTTTGGATTTGTTTCAAGTT 59.722 33.333 0.00 0.00 0.00 2.66
1987 2565 6.756542 GCTAGTTGTTTGGATTTGTTTCAAGT 59.243 34.615 0.00 0.00 0.00 3.16
1988 2566 6.200854 GGCTAGTTGTTTGGATTTGTTTCAAG 59.799 38.462 0.00 0.00 0.00 3.02
1989 2567 6.045955 GGCTAGTTGTTTGGATTTGTTTCAA 58.954 36.000 0.00 0.00 0.00 2.69
1990 2568 5.452636 GGGCTAGTTGTTTGGATTTGTTTCA 60.453 40.000 0.00 0.00 0.00 2.69
1991 2569 4.988540 GGGCTAGTTGTTTGGATTTGTTTC 59.011 41.667 0.00 0.00 0.00 2.78
1992 2570 4.407296 TGGGCTAGTTGTTTGGATTTGTTT 59.593 37.500 0.00 0.00 0.00 2.83
1993 2571 3.964031 TGGGCTAGTTGTTTGGATTTGTT 59.036 39.130 0.00 0.00 0.00 2.83
1994 2572 3.571590 TGGGCTAGTTGTTTGGATTTGT 58.428 40.909 0.00 0.00 0.00 2.83
1995 2573 4.220382 TCATGGGCTAGTTGTTTGGATTTG 59.780 41.667 0.00 0.00 0.00 2.32
1996 2574 4.415596 TCATGGGCTAGTTGTTTGGATTT 58.584 39.130 0.00 0.00 0.00 2.17
1997 2575 4.046286 TCATGGGCTAGTTGTTTGGATT 57.954 40.909 0.00 0.00 0.00 3.01
1998 2576 3.737559 TCATGGGCTAGTTGTTTGGAT 57.262 42.857 0.00 0.00 0.00 3.41
1999 2577 3.153919 GTTCATGGGCTAGTTGTTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
2000 2578 3.157087 AGTTCATGGGCTAGTTGTTTGG 58.843 45.455 0.00 0.00 0.00 3.28
2001 2579 4.278170 TCAAGTTCATGGGCTAGTTGTTTG 59.722 41.667 0.00 0.00 0.00 2.93
2002 2580 4.469657 TCAAGTTCATGGGCTAGTTGTTT 58.530 39.130 0.00 0.00 0.00 2.83
2003 2581 4.074970 CTCAAGTTCATGGGCTAGTTGTT 58.925 43.478 0.00 0.00 0.00 2.83
2004 2582 3.327757 TCTCAAGTTCATGGGCTAGTTGT 59.672 43.478 0.00 0.00 0.00 3.32
2005 2583 3.942829 TCTCAAGTTCATGGGCTAGTTG 58.057 45.455 0.00 0.00 0.00 3.16
2006 2584 4.384647 GGATCTCAAGTTCATGGGCTAGTT 60.385 45.833 0.00 0.00 0.00 2.24
2007 2585 3.135530 GGATCTCAAGTTCATGGGCTAGT 59.864 47.826 0.00 0.00 0.00 2.57
2008 2586 3.737850 GGATCTCAAGTTCATGGGCTAG 58.262 50.000 0.00 0.00 0.00 3.42
2009 2587 2.103094 CGGATCTCAAGTTCATGGGCTA 59.897 50.000 0.00 0.00 0.00 3.93
2010 2588 1.134280 CGGATCTCAAGTTCATGGGCT 60.134 52.381 0.00 0.00 0.00 5.19
2011 2589 1.134401 TCGGATCTCAAGTTCATGGGC 60.134 52.381 0.00 0.00 0.00 5.36
2012 2590 2.169352 ACTCGGATCTCAAGTTCATGGG 59.831 50.000 0.00 0.00 0.00 4.00
2013 2591 3.533606 ACTCGGATCTCAAGTTCATGG 57.466 47.619 0.00 0.00 0.00 3.66
2017 2595 6.310197 CAAATTGAACTCGGATCTCAAGTTC 58.690 40.000 19.58 19.58 45.80 3.01
2018 2596 5.182001 CCAAATTGAACTCGGATCTCAAGTT 59.818 40.000 8.30 8.30 37.73 2.66
2019 2597 4.697352 CCAAATTGAACTCGGATCTCAAGT 59.303 41.667 0.00 3.29 32.87 3.16
2020 2598 4.697352 ACCAAATTGAACTCGGATCTCAAG 59.303 41.667 0.00 0.00 32.87 3.02
2021 2599 4.651778 ACCAAATTGAACTCGGATCTCAA 58.348 39.130 0.00 4.86 33.82 3.02
2022 2600 4.253685 GACCAAATTGAACTCGGATCTCA 58.746 43.478 0.00 0.00 0.00 3.27
2023 2601 3.623510 GGACCAAATTGAACTCGGATCTC 59.376 47.826 0.00 0.00 0.00 2.75
2024 2602 3.009033 TGGACCAAATTGAACTCGGATCT 59.991 43.478 0.00 0.00 0.00 2.75
2025 2603 3.343617 TGGACCAAATTGAACTCGGATC 58.656 45.455 0.00 0.00 0.00 3.36
2026 2604 3.433306 TGGACCAAATTGAACTCGGAT 57.567 42.857 0.00 0.00 0.00 4.18
2027 2605 2.940994 TGGACCAAATTGAACTCGGA 57.059 45.000 0.00 0.00 0.00 4.55
2028 2606 4.314740 TTTTGGACCAAATTGAACTCGG 57.685 40.909 20.22 0.00 33.19 4.63
2029 2607 5.402270 GTGATTTTGGACCAAATTGAACTCG 59.598 40.000 20.22 0.00 33.19 4.18
2030 2608 5.696270 GGTGATTTTGGACCAAATTGAACTC 59.304 40.000 20.22 10.59 33.19 3.01
2031 2609 5.366477 AGGTGATTTTGGACCAAATTGAACT 59.634 36.000 20.22 15.44 33.19 3.01
2032 2610 5.610398 AGGTGATTTTGGACCAAATTGAAC 58.390 37.500 20.22 13.48 33.19 3.18
2033 2611 5.885449 AGGTGATTTTGGACCAAATTGAA 57.115 34.783 20.22 6.01 33.19 2.69
2034 2612 5.480073 CCTAGGTGATTTTGGACCAAATTGA 59.520 40.000 20.22 8.58 33.19 2.57
2035 2613 5.723295 CCTAGGTGATTTTGGACCAAATTG 58.277 41.667 20.22 5.61 33.19 2.32
2036 2614 4.222810 GCCTAGGTGATTTTGGACCAAATT 59.777 41.667 20.22 16.36 33.19 1.82
2037 2615 3.769300 GCCTAGGTGATTTTGGACCAAAT 59.231 43.478 20.22 10.49 33.19 2.32
2038 2616 3.161866 GCCTAGGTGATTTTGGACCAAA 58.838 45.455 15.89 15.89 34.36 3.28
2039 2617 2.802719 GCCTAGGTGATTTTGGACCAA 58.197 47.619 11.31 1.69 34.36 3.67
2040 2618 1.339631 CGCCTAGGTGATTTTGGACCA 60.340 52.381 17.96 0.00 34.36 4.02
2041 2619 1.379527 CGCCTAGGTGATTTTGGACC 58.620 55.000 17.96 0.00 0.00 4.46
2042 2620 0.733150 GCGCCTAGGTGATTTTGGAC 59.267 55.000 26.74 1.38 0.00 4.02
2043 2621 0.742990 CGCGCCTAGGTGATTTTGGA 60.743 55.000 26.74 0.00 0.00 3.53
2044 2622 0.742990 TCGCGCCTAGGTGATTTTGG 60.743 55.000 26.74 7.00 0.00 3.28
2045 2623 0.373716 GTCGCGCCTAGGTGATTTTG 59.626 55.000 26.74 9.24 0.00 2.44
2046 2624 0.743345 GGTCGCGCCTAGGTGATTTT 60.743 55.000 26.74 0.00 0.00 1.82
2047 2625 1.153429 GGTCGCGCCTAGGTGATTT 60.153 57.895 26.74 0.00 0.00 2.17
2048 2626 2.355986 TGGTCGCGCCTAGGTGATT 61.356 57.895 26.74 0.00 38.35 2.57
2049 2627 2.758327 TGGTCGCGCCTAGGTGAT 60.758 61.111 26.74 0.00 38.35 3.06
2050 2628 3.755628 GTGGTCGCGCCTAGGTGA 61.756 66.667 26.74 11.26 38.35 4.02
2053 2631 4.430765 AACGTGGTCGCGCCTAGG 62.431 66.667 18.14 3.67 41.18 3.02
2054 2632 3.179265 CAACGTGGTCGCGCCTAG 61.179 66.667 18.14 14.19 41.18 3.02
2055 2633 3.620300 CTCAACGTGGTCGCGCCTA 62.620 63.158 18.14 0.00 41.18 3.93
2059 2637 2.101209 AAAAGCTCAACGTGGTCGCG 62.101 55.000 0.00 0.00 41.18 5.87
2060 2638 0.028902 AAAAAGCTCAACGTGGTCGC 59.971 50.000 0.00 0.00 41.18 5.19
2079 2657 4.497473 CACTTTATGGACAGCCGAAAAA 57.503 40.909 0.00 0.00 36.79 1.94
2089 2667 5.048883 GCAATCTGCCCCACTTTATGGAC 62.049 52.174 0.00 0.00 44.35 4.02
2090 2668 2.949963 GCAATCTGCCCCACTTTATGGA 60.950 50.000 0.00 0.00 44.35 3.41
2091 2669 1.410153 GCAATCTGCCCCACTTTATGG 59.590 52.381 0.00 0.00 40.30 2.74
2092 2670 2.877043 GCAATCTGCCCCACTTTATG 57.123 50.000 0.00 0.00 37.42 1.90
2103 2681 1.227943 TCTATGGCCGGCAATCTGC 60.228 57.895 30.85 10.31 44.08 4.26
2104 2682 0.394192 TCTCTATGGCCGGCAATCTG 59.606 55.000 30.85 18.81 0.00 2.90
2105 2683 0.683973 CTCTCTATGGCCGGCAATCT 59.316 55.000 30.85 11.69 0.00 2.40
2106 2684 0.681733 TCTCTCTATGGCCGGCAATC 59.318 55.000 30.85 12.03 0.00 2.67
2107 2685 1.131638 TTCTCTCTATGGCCGGCAAT 58.868 50.000 30.85 26.68 0.00 3.56
2108 2686 0.908910 TTTCTCTCTATGGCCGGCAA 59.091 50.000 30.85 20.37 0.00 4.52
2109 2687 0.908910 TTTTCTCTCTATGGCCGGCA 59.091 50.000 30.85 15.30 0.00 5.69
2110 2688 2.038387 TTTTTCTCTCTATGGCCGGC 57.962 50.000 21.18 21.18 0.00 6.13
2111 2689 4.199310 TGAATTTTTCTCTCTATGGCCGG 58.801 43.478 0.00 0.00 0.00 6.13
2112 2690 5.818136 TTGAATTTTTCTCTCTATGGCCG 57.182 39.130 0.00 0.00 0.00 6.13
2196 2774 3.312421 AGTGAACGATCCGCCATTTATTG 59.688 43.478 0.00 0.00 0.00 1.90
2197 2775 3.541632 AGTGAACGATCCGCCATTTATT 58.458 40.909 0.00 0.00 0.00 1.40
2198 2776 3.194005 AGTGAACGATCCGCCATTTAT 57.806 42.857 0.00 0.00 0.00 1.40
2199 2777 2.684001 AGTGAACGATCCGCCATTTA 57.316 45.000 0.00 0.00 0.00 1.40
2200 2778 1.821216 AAGTGAACGATCCGCCATTT 58.179 45.000 0.00 0.00 0.00 2.32
2201 2779 1.821216 AAAGTGAACGATCCGCCATT 58.179 45.000 0.00 0.00 0.00 3.16
2202 2780 2.550978 CTAAAGTGAACGATCCGCCAT 58.449 47.619 0.00 0.00 0.00 4.40
2203 2781 2.004583 CTAAAGTGAACGATCCGCCA 57.995 50.000 0.00 0.00 0.00 5.69
2204 2782 0.651031 GCTAAAGTGAACGATCCGCC 59.349 55.000 0.00 0.00 0.00 6.13
2205 2783 1.641577 AGCTAAAGTGAACGATCCGC 58.358 50.000 0.00 0.00 0.00 5.54
2206 2784 3.766151 TGTAGCTAAAGTGAACGATCCG 58.234 45.455 0.00 0.00 0.00 4.18
2207 2785 5.593010 AGATGTAGCTAAAGTGAACGATCC 58.407 41.667 0.00 0.00 0.00 3.36
2208 2786 6.266323 TGAGATGTAGCTAAAGTGAACGATC 58.734 40.000 0.00 0.00 0.00 3.69
2209 2787 6.208988 TGAGATGTAGCTAAAGTGAACGAT 57.791 37.500 0.00 0.00 0.00 3.73
2210 2788 5.638596 TGAGATGTAGCTAAAGTGAACGA 57.361 39.130 0.00 0.00 0.00 3.85
2211 2789 4.266502 GCTGAGATGTAGCTAAAGTGAACG 59.733 45.833 0.00 0.00 38.14 3.95
2377 2958 2.554032 CAGCCCAACAAGAAATCGACTT 59.446 45.455 0.00 0.00 0.00 3.01
2429 3011 8.801715 AAAACAGAAGCAAATACACACATAAG 57.198 30.769 0.00 0.00 0.00 1.73
2618 3236 8.531622 CAAACCATTGTGCTTTCAACAATATA 57.468 30.769 1.76 0.00 33.36 0.86
2700 3339 8.686334 AGTTAGTTGCATTGATATTACCCTTTG 58.314 33.333 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.