Multiple sequence alignment - TraesCS4A01G391400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G391400 chr4A 100.000 7076 0 0 1 7076 668152369 668145294 0.000000e+00 13068.0
1 TraesCS4A01G391400 chr4A 85.460 1685 197 26 4450 6124 668161823 668160177 0.000000e+00 1711.0
2 TraesCS4A01G391400 chr4A 83.847 941 147 3 3427 4366 667861429 667860493 0.000000e+00 891.0
3 TraesCS4A01G391400 chr4A 82.505 1006 169 5 3366 4367 668110352 668109350 0.000000e+00 876.0
4 TraesCS4A01G391400 chr4A 87.069 348 37 6 4447 4786 668095474 668095127 3.100000e-103 387.0
5 TraesCS4A01G391400 chr4A 94.828 58 3 0 7019 7076 35583145 35583088 2.720000e-14 91.6
6 TraesCS4A01G391400 chr4A 94.915 59 2 1 7018 7076 732619784 732619841 2.720000e-14 91.6
7 TraesCS4A01G391400 chr4A 92.857 42 3 0 3286 3327 668148986 668148945 2.130000e-05 62.1
8 TraesCS4A01G391400 chr4A 92.857 42 3 0 3384 3425 668149084 668149043 2.130000e-05 62.1
9 TraesCS4A01G391400 chr7D 92.285 4822 236 60 2263 7019 53499874 53495124 0.000000e+00 6719.0
10 TraesCS4A01G391400 chr7D 83.641 2763 378 50 3385 6120 53509958 53507243 0.000000e+00 2531.0
11 TraesCS4A01G391400 chr7D 88.551 1380 144 12 4724 6099 53484168 53482799 0.000000e+00 1661.0
12 TraesCS4A01G391400 chr7D 87.490 1247 143 10 4861 6103 52696508 52697745 0.000000e+00 1426.0
13 TraesCS4A01G391400 chr7D 85.547 941 134 2 3427 4366 52821429 52822368 0.000000e+00 983.0
14 TraesCS4A01G391400 chr7D 84.255 940 145 2 3427 4366 52829691 52830627 0.000000e+00 913.0
15 TraesCS4A01G391400 chr7D 82.934 1002 164 5 3366 4366 53427273 53426278 0.000000e+00 896.0
16 TraesCS4A01G391400 chr7D 82.745 991 164 5 3381 4367 53485412 53484425 0.000000e+00 876.0
17 TraesCS4A01G391400 chr7D 82.207 1006 172 5 3366 4367 52695222 52696224 0.000000e+00 859.0
18 TraesCS4A01G391400 chr7D 82.377 993 165 6 3383 4367 53434406 53433416 0.000000e+00 856.0
19 TraesCS4A01G391400 chr7D 88.442 597 47 9 1664 2255 53500652 53500073 0.000000e+00 701.0
20 TraesCS4A01G391400 chr7D 83.389 602 64 19 828 1407 53501330 53500743 6.290000e-145 525.0
21 TraesCS4A01G391400 chr7D 91.967 361 24 2 211 571 53501687 53501332 1.060000e-137 501.0
22 TraesCS4A01G391400 chr7D 87.349 332 34 6 4447 4770 52797548 52797879 2.410000e-99 374.0
23 TraesCS4A01G391400 chr7D 90.106 283 28 0 4084 4366 53415987 53415705 1.120000e-97 368.0
24 TraesCS4A01G391400 chr7D 86.286 350 34 7 4447 4786 53433366 53433021 1.120000e-97 368.0
25 TraesCS4A01G391400 chr7D 93.750 224 13 1 4447 4669 53484406 53484183 1.140000e-87 335.0
26 TraesCS4A01G391400 chr7D 93.304 224 14 1 4447 4669 52696243 52696466 5.290000e-86 329.0
27 TraesCS4A01G391400 chr7D 89.712 243 23 2 4446 4686 52822415 52822657 6.890000e-80 309.0
28 TraesCS4A01G391400 chr7D 89.140 221 22 2 4447 4665 52830646 52830866 2.510000e-69 274.0
29 TraesCS4A01G391400 chr7D 89.573 211 21 1 4450 4659 53415683 53415473 4.210000e-67 267.0
30 TraesCS4A01G391400 chr7D 95.513 156 7 0 1 156 53502158 53502003 4.240000e-62 250.0
31 TraesCS4A01G391400 chr7D 76.056 355 51 27 2731 3070 52694644 52694979 3.420000e-33 154.0
32 TraesCS4A01G391400 chr7D 92.857 42 3 0 3286 3327 53498749 53498708 2.130000e-05 62.1
33 TraesCS4A01G391400 chr7D 92.857 42 3 0 3384 3425 53498844 53498803 2.130000e-05 62.1
34 TraesCS4A01G391400 chr7A 95.769 3120 103 7 3153 6252 55883812 55880702 0.000000e+00 5003.0
35 TraesCS4A01G391400 chr7A 89.392 1678 145 24 4456 6120 55894465 55892808 0.000000e+00 2082.0
36 TraesCS4A01G391400 chr7A 87.754 1429 158 14 4724 6148 55427215 55425800 0.000000e+00 1653.0
37 TraesCS4A01G391400 chr7A 87.060 1136 139 4 4818 5946 55383712 55382578 0.000000e+00 1277.0
38 TraesCS4A01G391400 chr7A 83.980 980 152 3 3359 4338 55385062 55384088 0.000000e+00 935.0
39 TraesCS4A01G391400 chr7A 89.563 709 48 14 6326 7019 112524592 112523895 0.000000e+00 876.0
40 TraesCS4A01G391400 chr7A 85.242 847 61 31 2356 3192 55884604 55883812 0.000000e+00 813.0
41 TraesCS4A01G391400 chr7A 83.516 637 65 24 6375 6978 55880584 55879955 6.200000e-155 558.0
42 TraesCS4A01G391400 chr7A 86.517 445 39 7 1820 2255 55885355 55884923 2.990000e-128 470.0
43 TraesCS4A01G391400 chr7A 86.707 331 36 6 4447 4769 55396979 55396649 1.880000e-95 361.0
44 TraesCS4A01G391400 chr7A 94.196 224 12 1 4447 4669 55427453 55427230 2.440000e-89 340.0
45 TraesCS4A01G391400 chr7A 85.294 340 32 14 237 571 55888228 55887902 1.140000e-87 335.0
46 TraesCS4A01G391400 chr7A 94.624 93 3 2 6250 6340 55880663 55880571 7.400000e-30 143.0
47 TraesCS4A01G391400 chr5B 95.094 265 9 2 564 824 8022684 8022948 1.420000e-111 414.0
48 TraesCS4A01G391400 chr5B 93.536 263 13 2 565 823 516967242 516967504 8.610000e-104 388.0
49 TraesCS4A01G391400 chr5B 93.208 265 13 4 561 822 347589333 347589595 1.110000e-102 385.0
50 TraesCS4A01G391400 chr5B 94.595 37 1 1 1406 1442 677344399 677344434 1.000000e-03 56.5
51 TraesCS4A01G391400 chr4B 94.275 262 11 3 566 823 33742362 33742623 1.430000e-106 398.0
52 TraesCS4A01G391400 chr4B 93.536 263 13 2 565 823 161846006 161846268 8.610000e-104 388.0
53 TraesCS4A01G391400 chr4B 93.511 262 13 2 565 822 270860558 270860297 3.100000e-103 387.0
54 TraesCS4A01G391400 chr4B 96.000 50 1 1 1409 1458 329812829 329812781 5.880000e-11 80.5
55 TraesCS4A01G391400 chr3B 93.916 263 12 2 565 823 813256853 813257115 1.850000e-105 394.0
56 TraesCS4A01G391400 chr3B 92.188 64 5 0 7013 7076 808370934 808370871 2.720000e-14 91.6
57 TraesCS4A01G391400 chr3B 92.188 64 5 0 7013 7076 808407869 808407806 2.720000e-14 91.6
58 TraesCS4A01G391400 chr3B 92.188 64 5 0 7013 7076 808443563 808443500 2.720000e-14 91.6
59 TraesCS4A01G391400 chr3B 93.333 60 3 1 7017 7076 262710595 262710653 3.520000e-13 87.9
60 TraesCS4A01G391400 chr7B 93.536 263 13 3 566 824 186334619 186334357 8.610000e-104 388.0
61 TraesCS4A01G391400 chr5D 92.857 266 15 3 562 823 534789314 534789049 4.000000e-102 383.0
62 TraesCS4A01G391400 chr5D 82.394 142 20 4 6713 6853 256439056 256438919 1.250000e-22 119.0
63 TraesCS4A01G391400 chr5D 87.037 54 2 2 1406 1459 560463056 560463008 1.000000e-03 56.5
64 TraesCS4A01G391400 chr2D 79.111 225 34 10 6654 6873 331753438 331753654 7.400000e-30 143.0
65 TraesCS4A01G391400 chr6D 77.391 230 40 10 6575 6795 91558084 91558310 7.450000e-25 126.0
66 TraesCS4A01G391400 chr6D 93.103 58 4 0 7019 7076 237652852 237652909 1.260000e-12 86.1
67 TraesCS4A01G391400 chr6A 74.267 307 57 11 6553 6851 415019726 415019434 7.500000e-20 110.0
68 TraesCS4A01G391400 chr3A 93.220 59 4 0 7018 7076 701339971 701339913 3.520000e-13 87.9
69 TraesCS4A01G391400 chr3A 90.909 44 4 0 6558 6601 200809810 200809853 7.670000e-05 60.2
70 TraesCS4A01G391400 chr3A 96.875 32 1 0 6571 6602 32163638 32163669 4.000000e-03 54.7
71 TraesCS4A01G391400 chr4D 96.154 52 2 0 7025 7076 47089453 47089402 1.260000e-12 86.1
72 TraesCS4A01G391400 chrUn 92.683 41 2 1 1406 1446 23784149 23784188 2.760000e-04 58.4
73 TraesCS4A01G391400 chrUn 92.683 41 2 1 1406 1446 291098606 291098645 2.760000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G391400 chr4A 668145294 668152369 7075 True 4397.400000 13068 95.238000 1 7076 3 chr4A.!!$R6 7075
1 TraesCS4A01G391400 chr4A 668160177 668161823 1646 True 1711.000000 1711 85.460000 4450 6124 1 chr4A.!!$R5 1674
2 TraesCS4A01G391400 chr4A 667860493 667861429 936 True 891.000000 891 83.847000 3427 4366 1 chr4A.!!$R2 939
3 TraesCS4A01G391400 chr4A 668109350 668110352 1002 True 876.000000 876 82.505000 3366 4367 1 chr4A.!!$R4 1001
4 TraesCS4A01G391400 chr7D 53507243 53509958 2715 True 2531.000000 2531 83.641000 3385 6120 1 chr7D.!!$R2 2735
5 TraesCS4A01G391400 chr7D 53495124 53502158 7034 True 1260.028571 6719 91.044286 1 7019 7 chr7D.!!$R6 7018
6 TraesCS4A01G391400 chr7D 53482799 53485412 2613 True 957.333333 1661 88.348667 3381 6099 3 chr7D.!!$R5 2718
7 TraesCS4A01G391400 chr7D 53426278 53427273 995 True 896.000000 896 82.934000 3366 4366 1 chr7D.!!$R1 1000
8 TraesCS4A01G391400 chr7D 52694644 52697745 3101 False 692.000000 1426 84.764250 2731 6103 4 chr7D.!!$F2 3372
9 TraesCS4A01G391400 chr7D 52821429 52822657 1228 False 646.000000 983 87.629500 3427 4686 2 chr7D.!!$F3 1259
10 TraesCS4A01G391400 chr7D 53433021 53434406 1385 True 612.000000 856 84.331500 3383 4786 2 chr7D.!!$R4 1403
11 TraesCS4A01G391400 chr7D 52829691 52830866 1175 False 593.500000 913 86.697500 3427 4665 2 chr7D.!!$F4 1238
12 TraesCS4A01G391400 chr7D 53415473 53415987 514 True 317.500000 368 89.839500 4084 4659 2 chr7D.!!$R3 575
13 TraesCS4A01G391400 chr7A 55892808 55894465 1657 True 2082.000000 2082 89.392000 4456 6120 1 chr7A.!!$R2 1664
14 TraesCS4A01G391400 chr7A 55879955 55888228 8273 True 1220.333333 5003 88.493667 237 6978 6 chr7A.!!$R6 6741
15 TraesCS4A01G391400 chr7A 55382578 55385062 2484 True 1106.000000 1277 85.520000 3359 5946 2 chr7A.!!$R4 2587
16 TraesCS4A01G391400 chr7A 55425800 55427453 1653 True 996.500000 1653 90.975000 4447 6148 2 chr7A.!!$R5 1701
17 TraesCS4A01G391400 chr7A 112523895 112524592 697 True 876.000000 876 89.563000 6326 7019 1 chr7A.!!$R3 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 685 0.099082 GAGTAGCTCACGGTCTTCGG 59.901 60.000 0.0 0.0 44.45 4.30 F
1057 1335 0.039326 TCCGGCCTAGATAGCTACCC 59.961 60.000 0.0 0.0 0.00 3.69 F
1634 2517 0.038744 AAATGGCTCCTGTCTGGTGG 59.961 55.000 0.0 0.0 37.07 4.61 F
2418 4511 0.036294 GTGGCAAGTAGGGGTCAGAC 60.036 60.000 0.0 0.0 0.00 3.51 F
2530 4631 0.318441 TGCTCGGACAACAGGAAGAG 59.682 55.000 0.0 0.0 0.00 2.85 F
2537 4638 1.289066 CAACAGGAAGAGCGTCCGA 59.711 57.895 0.0 0.0 43.03 4.55 F
3224 5411 1.394697 GTGTTCGCATTGGTTTGTCG 58.605 50.000 0.0 0.0 0.00 4.35 F
4209 6421 0.534203 TGTTCGGAAGCCACCAAGAC 60.534 55.000 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 2498 0.038744 CCACCAGACAGGAGCCATTT 59.961 55.000 0.00 0.00 41.22 2.32 R
1906 3756 0.106719 AAACCCGTGGCATGGATAGG 60.107 55.000 27.29 12.45 0.00 2.57 R
3448 5645 0.108138 GGATTAGCGTGACAGCACCT 60.108 55.000 2.68 0.00 42.09 4.00 R
4066 6278 0.461870 CCACCTCCGCGATGAATGAA 60.462 55.000 8.23 0.00 0.00 2.57 R
4078 6290 0.680061 ACTTGAACGAGTCCACCTCC 59.320 55.000 0.00 0.00 36.82 4.30 R
4209 6421 1.153369 CAGGCATACTGTGACCCCG 60.153 63.158 0.00 0.00 42.42 5.73 R
5748 8000 1.146930 GCTCCCATCCTTCATCGCA 59.853 57.895 0.00 0.00 0.00 5.10 R
6569 8906 1.144057 GGGTGTAGATGAGCCCACG 59.856 63.158 0.00 0.00 40.76 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.227910 ACGGTGTTGTTGTCTAAATAGTTTCAT 59.772 33.333 0.00 0.00 0.00 2.57
69 70 9.180678 GGTGTTGTTGTCTAAATAGTTTCATTG 57.819 33.333 0.00 0.00 0.00 2.82
166 282 5.007332 GTGTTGTCAAGTACGAAGAAACCAT 59.993 40.000 0.00 0.00 0.00 3.55
221 484 8.129496 TCTATGTGTTACATTGAAGACACCTA 57.871 34.615 14.49 10.42 41.16 3.08
243 506 5.000012 AGTACTTGTTCTAGCTTCATCCG 58.000 43.478 0.00 0.00 0.00 4.18
293 556 9.675553 CTATATACGTTTGATGCATATGTTTCG 57.324 33.333 0.00 3.16 0.00 3.46
300 563 3.935828 TGATGCATATGTTTCGTTCCGAA 59.064 39.130 0.00 0.00 44.28 4.30
393 661 3.520290 TCAGATGAACATACGTGTCCC 57.480 47.619 0.00 0.00 37.67 4.46
394 662 2.167693 TCAGATGAACATACGTGTCCCC 59.832 50.000 0.00 0.00 37.67 4.81
400 668 2.443390 ATACGTGTCCCCGGGGAG 60.443 66.667 43.53 32.06 46.16 4.30
407 675 3.352748 TCCCCGGGGAGTAGCTCA 61.353 66.667 39.67 14.59 39.76 4.26
417 685 0.099082 GAGTAGCTCACGGTCTTCGG 59.901 60.000 0.00 0.00 44.45 4.30
428 696 1.597461 GTCTTCGGTCTGGGAAGGG 59.403 63.158 2.12 0.00 40.95 3.95
448 716 6.218108 AGGGGATAAACTAAACTAGACGTG 57.782 41.667 0.00 0.00 0.00 4.49
571 839 6.313164 GCAACTACAGTTTGATTAGTACTCCC 59.687 42.308 0.00 0.00 35.83 4.30
572 840 7.612677 CAACTACAGTTTGATTAGTACTCCCT 58.387 38.462 0.00 0.00 35.83 4.20
573 841 7.407393 ACTACAGTTTGATTAGTACTCCCTC 57.593 40.000 0.00 0.00 0.00 4.30
574 842 5.678955 ACAGTTTGATTAGTACTCCCTCC 57.321 43.478 0.00 0.00 0.00 4.30
575 843 4.159879 ACAGTTTGATTAGTACTCCCTCCG 59.840 45.833 0.00 0.00 0.00 4.63
576 844 4.159879 CAGTTTGATTAGTACTCCCTCCGT 59.840 45.833 0.00 0.00 0.00 4.69
577 845 4.776308 AGTTTGATTAGTACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
578 846 5.247792 AGTTTGATTAGTACTCCCTCCGTTT 59.752 40.000 0.00 0.00 0.00 3.60
579 847 5.750352 TTGATTAGTACTCCCTCCGTTTT 57.250 39.130 0.00 0.00 0.00 2.43
580 848 5.750352 TGATTAGTACTCCCTCCGTTTTT 57.250 39.130 0.00 0.00 0.00 1.94
618 886 8.738645 AAGATTTAGTCAAAGTCAAACTCACT 57.261 30.769 0.00 0.00 0.00 3.41
619 887 9.832445 AAGATTTAGTCAAAGTCAAACTCACTA 57.168 29.630 0.00 0.00 0.00 2.74
620 888 9.832445 AGATTTAGTCAAAGTCAAACTCACTAA 57.168 29.630 0.00 0.00 0.00 2.24
623 891 9.444600 TTTAGTCAAAGTCAAACTCACTAAAGT 57.555 29.630 11.31 0.00 32.54 2.66
624 892 7.923414 AGTCAAAGTCAAACTCACTAAAGTT 57.077 32.000 0.00 0.00 41.20 2.66
669 937 8.749841 AATATCAACATCTACGATACTGAAGC 57.250 34.615 0.00 0.00 0.00 3.86
670 938 5.836821 TCAACATCTACGATACTGAAGCT 57.163 39.130 0.00 0.00 0.00 3.74
671 939 6.937436 TCAACATCTACGATACTGAAGCTA 57.063 37.500 0.00 0.00 0.00 3.32
672 940 7.511959 TCAACATCTACGATACTGAAGCTAT 57.488 36.000 0.00 0.00 0.00 2.97
673 941 8.617290 TCAACATCTACGATACTGAAGCTATA 57.383 34.615 0.00 0.00 0.00 1.31
674 942 9.232473 TCAACATCTACGATACTGAAGCTATAT 57.768 33.333 0.00 0.00 0.00 0.86
675 943 9.283420 CAACATCTACGATACTGAAGCTATATG 57.717 37.037 0.00 0.00 0.00 1.78
676 944 7.990917 ACATCTACGATACTGAAGCTATATGG 58.009 38.462 0.00 0.00 0.00 2.74
677 945 7.612244 ACATCTACGATACTGAAGCTATATGGT 59.388 37.037 0.00 0.00 0.00 3.55
678 946 9.110502 CATCTACGATACTGAAGCTATATGGTA 57.889 37.037 0.00 0.00 0.00 3.25
679 947 9.854668 ATCTACGATACTGAAGCTATATGGTAT 57.145 33.333 0.00 0.00 0.00 2.73
680 948 9.110502 TCTACGATACTGAAGCTATATGGTATG 57.889 37.037 0.00 0.00 0.00 2.39
681 949 7.939784 ACGATACTGAAGCTATATGGTATGA 57.060 36.000 0.00 0.00 0.00 2.15
682 950 8.349568 ACGATACTGAAGCTATATGGTATGAA 57.650 34.615 0.00 0.00 0.00 2.57
683 951 8.803235 ACGATACTGAAGCTATATGGTATGAAA 58.197 33.333 0.00 0.00 0.00 2.69
684 952 9.639601 CGATACTGAAGCTATATGGTATGAAAA 57.360 33.333 0.00 0.00 0.00 2.29
796 1064 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
797 1065 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
798 1066 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
799 1067 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
800 1068 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
801 1069 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
802 1070 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
803 1071 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
804 1072 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
805 1073 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
813 1081 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
814 1082 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
815 1083 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
816 1084 4.699637 TGCAGACTAAAAAGAAACGGAGA 58.300 39.130 0.00 0.00 0.00 3.71
817 1085 4.750098 TGCAGACTAAAAAGAAACGGAGAG 59.250 41.667 0.00 0.00 0.00 3.20
818 1086 4.989168 GCAGACTAAAAAGAAACGGAGAGA 59.011 41.667 0.00 0.00 0.00 3.10
819 1087 5.119434 GCAGACTAAAAAGAAACGGAGAGAG 59.881 44.000 0.00 0.00 0.00 3.20
820 1088 6.217294 CAGACTAAAAAGAAACGGAGAGAGT 58.783 40.000 0.00 0.00 0.00 3.24
821 1089 7.368833 CAGACTAAAAAGAAACGGAGAGAGTA 58.631 38.462 0.00 0.00 0.00 2.59
822 1090 7.326547 CAGACTAAAAAGAAACGGAGAGAGTAC 59.673 40.741 0.00 0.00 0.00 2.73
823 1091 7.231115 AGACTAAAAAGAAACGGAGAGAGTACT 59.769 37.037 0.00 0.00 0.00 2.73
824 1092 7.724287 ACTAAAAAGAAACGGAGAGAGTACTT 58.276 34.615 0.00 0.00 0.00 2.24
825 1093 8.202811 ACTAAAAAGAAACGGAGAGAGTACTTT 58.797 33.333 0.00 0.00 33.41 2.66
837 1105 4.163458 AGAGAGTACTTTGTTTCACACCCA 59.837 41.667 0.00 0.00 0.00 4.51
838 1106 4.451900 AGAGTACTTTGTTTCACACCCAG 58.548 43.478 0.00 0.00 0.00 4.45
899 1168 7.432545 CCTTGTGTGTATATATAGCTCGTATGC 59.567 40.741 0.00 0.00 0.00 3.14
900 1169 6.483687 TGTGTGTATATATAGCTCGTATGCG 58.516 40.000 0.00 0.00 38.13 4.73
908 1177 6.732531 ATATAGCTCGTATGCGTAAGTACA 57.267 37.500 2.37 0.00 39.49 2.90
935 1206 4.214758 ACAAATAACCCTCGCAACAACTAC 59.785 41.667 0.00 0.00 0.00 2.73
950 1221 6.401688 GCAACAACTACACAGTCGCATAATAA 60.402 38.462 0.00 0.00 32.29 1.40
956 1227 3.615496 ACACAGTCGCATAATAAACGGTC 59.385 43.478 0.00 0.00 0.00 4.79
968 1241 0.248175 AAACGGTCGCGAAACAAACC 60.248 50.000 12.06 6.32 0.00 3.27
971 1244 2.246042 GGTCGCGAAACAAACCGGA 61.246 57.895 12.06 0.00 0.00 5.14
992 1265 3.961182 AGCTACACCGTACATTCATACG 58.039 45.455 0.00 0.00 45.99 3.06
1003 1280 5.401079 CGTACATTCATACGCACATACATGA 59.599 40.000 0.00 0.00 41.28 3.07
1015 1292 3.125829 CACATACATGAGTTGGTCACTGC 59.874 47.826 0.00 0.00 38.28 4.40
1016 1293 3.008375 ACATACATGAGTTGGTCACTGCT 59.992 43.478 0.00 0.00 38.28 4.24
1017 1294 2.645838 ACATGAGTTGGTCACTGCTT 57.354 45.000 0.00 0.00 38.28 3.91
1021 1298 1.070758 TGAGTTGGTCACTGCTTCCTC 59.929 52.381 0.00 0.00 35.01 3.71
1040 1317 4.227527 TCCTCCAGGTAAGAATTTCCTTCC 59.772 45.833 0.00 0.00 44.02 3.46
1048 1325 2.478292 AGAATTTCCTTCCGGCCTAGA 58.522 47.619 0.00 0.00 34.11 2.43
1053 1330 0.483328 TCCTTCCGGCCTAGATAGCT 59.517 55.000 0.00 0.00 0.00 3.32
1057 1335 0.039326 TCCGGCCTAGATAGCTACCC 59.961 60.000 0.00 0.00 0.00 3.69
1063 1355 3.231818 GCCTAGATAGCTACCCTGTTCA 58.768 50.000 0.00 0.00 0.00 3.18
1066 1358 5.567823 GCCTAGATAGCTACCCTGTTCATTC 60.568 48.000 0.00 0.00 0.00 2.67
1090 1382 2.038387 AAGAACACACTCCAAGCGTT 57.962 45.000 0.00 0.00 0.00 4.84
1091 1383 2.038387 AGAACACACTCCAAGCGTTT 57.962 45.000 0.00 0.00 0.00 3.60
1092 1384 1.940613 AGAACACACTCCAAGCGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
1093 1385 1.940613 GAACACACTCCAAGCGTTTCT 59.059 47.619 0.00 0.00 0.00 2.52
1094 1386 2.038387 ACACACTCCAAGCGTTTCTT 57.962 45.000 0.00 0.00 34.78 2.52
1095 1387 2.365582 ACACACTCCAAGCGTTTCTTT 58.634 42.857 0.00 0.00 31.27 2.52
1096 1388 2.354821 ACACACTCCAAGCGTTTCTTTC 59.645 45.455 0.00 0.00 31.27 2.62
1097 1389 2.614057 CACACTCCAAGCGTTTCTTTCT 59.386 45.455 0.00 0.00 31.27 2.52
1098 1390 2.614057 ACACTCCAAGCGTTTCTTTCTG 59.386 45.455 0.00 0.00 31.27 3.02
1100 1392 3.807622 CACTCCAAGCGTTTCTTTCTGTA 59.192 43.478 0.00 0.00 31.27 2.74
1101 1393 4.058817 ACTCCAAGCGTTTCTTTCTGTAG 58.941 43.478 0.00 0.00 31.27 2.74
1102 1394 4.202223 ACTCCAAGCGTTTCTTTCTGTAGA 60.202 41.667 0.00 0.00 31.27 2.59
1103 1395 4.307432 TCCAAGCGTTTCTTTCTGTAGAG 58.693 43.478 0.00 0.00 31.27 2.43
1104 1396 4.038763 TCCAAGCGTTTCTTTCTGTAGAGA 59.961 41.667 0.00 0.00 31.27 3.10
1105 1397 4.387256 CCAAGCGTTTCTTTCTGTAGAGAG 59.613 45.833 0.00 0.00 31.27 3.20
1154 1452 7.834068 TGCATGTAGTTTTTGTTGCTTTTTA 57.166 28.000 0.00 0.00 0.00 1.52
1171 1469 7.425606 TGCTTTTTAGTTGCTCTTTTCTAAGG 58.574 34.615 0.00 0.00 32.02 2.69
1205 1503 5.354234 CCATGAGTTTATTTTGCGGAGTAGT 59.646 40.000 0.00 0.00 0.00 2.73
1213 1511 4.339872 TTTTGCGGAGTAGTAGTTTCCA 57.660 40.909 2.75 0.00 0.00 3.53
1219 1517 4.507021 GCGGAGTAGTAGTTTCCATTTAGC 59.493 45.833 2.75 0.00 0.00 3.09
1302 1600 2.357637 GCTAATGCATGGCGAAAGGTTA 59.642 45.455 0.00 0.00 39.41 2.85
1303 1601 2.939460 AATGCATGGCGAAAGGTTAC 57.061 45.000 0.00 0.00 0.00 2.50
1318 1616 7.352739 CGAAAGGTTACTATTGCCATATGAAC 58.647 38.462 3.65 0.00 0.00 3.18
1365 1664 6.607735 AGGATGCACAATTTTTCAAGTTTG 57.392 33.333 0.00 0.00 0.00 2.93
1366 1665 6.114767 AGGATGCACAATTTTTCAAGTTTGT 58.885 32.000 0.00 0.00 32.76 2.83
1399 1698 1.013596 CTATTTCGCCGCACCATCAA 58.986 50.000 0.00 0.00 0.00 2.57
1400 1699 1.603802 CTATTTCGCCGCACCATCAAT 59.396 47.619 0.00 0.00 0.00 2.57
1401 1700 1.674359 ATTTCGCCGCACCATCAATA 58.326 45.000 0.00 0.00 0.00 1.90
1402 1701 0.730265 TTTCGCCGCACCATCAATAC 59.270 50.000 0.00 0.00 0.00 1.89
1415 1894 6.494842 CACCATCAATACCATACCGAAAAAG 58.505 40.000 0.00 0.00 0.00 2.27
1423 1902 2.486592 CCATACCGAAAAAGGCTTTCGT 59.513 45.455 13.76 9.60 46.85 3.85
1425 1904 1.963172 ACCGAAAAAGGCTTTCGTCT 58.037 45.000 13.76 0.00 46.85 4.18
1435 1914 4.119442 AGGCTTTCGTCTCGCTTTATAA 57.881 40.909 0.00 0.00 0.00 0.98
1437 1916 4.933400 AGGCTTTCGTCTCGCTTTATAAAA 59.067 37.500 0.00 0.00 0.00 1.52
1438 1917 5.585047 AGGCTTTCGTCTCGCTTTATAAAAT 59.415 36.000 0.00 0.00 0.00 1.82
1441 1920 7.906527 GGCTTTCGTCTCGCTTTATAAAATAAA 59.093 33.333 0.00 0.00 0.00 1.40
1443 1922 9.207042 CTTTCGTCTCGCTTTATAAAATAAACC 57.793 33.333 0.00 0.00 0.00 3.27
1447 2064 8.782327 CGTCTCGCTTTATAAAATAAACCAAAC 58.218 33.333 0.00 0.00 0.00 2.93
1451 2068 6.237622 CGCTTTATAAAATAAACCAAACCGCC 60.238 38.462 0.00 0.00 0.00 6.13
1457 2074 0.955905 TAAACCAAACCGCCAAGAGC 59.044 50.000 0.00 0.00 38.52 4.09
1458 2075 1.744320 AAACCAAACCGCCAAGAGCC 61.744 55.000 0.00 0.00 38.78 4.70
1460 2077 4.404654 CAAACCGCCAAGAGCCGC 62.405 66.667 0.00 0.00 38.78 6.53
1471 2088 1.802960 CAAGAGCCGCACCATCATATC 59.197 52.381 0.00 0.00 0.00 1.63
1480 2097 4.093998 CCGCACCATCATATCATAAAGCTC 59.906 45.833 0.00 0.00 0.00 4.09
1483 2100 5.163913 GCACCATCATATCATAAAGCTCGAC 60.164 44.000 0.00 0.00 0.00 4.20
1490 2107 1.746787 TCATAAAGCTCGACGGTAGCA 59.253 47.619 10.71 0.00 42.62 3.49
1506 2389 0.039618 AGCATGTCGGAAAACCCCAT 59.960 50.000 0.00 0.00 0.00 4.00
1508 2391 1.955208 GCATGTCGGAAAACCCCATCT 60.955 52.381 0.00 0.00 0.00 2.90
1522 2405 0.803768 CCATCTCCAGCACGACTTCG 60.804 60.000 0.00 0.00 46.33 3.79
1540 2423 0.316360 CGTCCCCGAAAACAAACACG 60.316 55.000 0.00 0.00 35.63 4.49
1543 2426 1.817447 TCCCCGAAAACAAACACGTTT 59.183 42.857 0.00 0.00 40.79 3.60
1545 2428 3.631227 TCCCCGAAAACAAACACGTTTAT 59.369 39.130 0.00 0.00 38.13 1.40
1547 2430 5.297776 TCCCCGAAAACAAACACGTTTATAA 59.702 36.000 0.00 0.00 38.13 0.98
1548 2431 5.975939 CCCCGAAAACAAACACGTTTATAAA 59.024 36.000 0.00 0.00 38.13 1.40
1549 2432 6.074941 CCCCGAAAACAAACACGTTTATAAAC 60.075 38.462 16.87 16.87 38.13 2.01
1550 2433 6.692249 CCCGAAAACAAACACGTTTATAAACT 59.308 34.615 22.57 9.78 38.13 2.66
1553 2436 8.458328 CGAAAACAAACACGTTTATAAACTCTG 58.542 33.333 22.57 18.91 38.13 3.35
1554 2437 9.281075 GAAAACAAACACGTTTATAAACTCTGT 57.719 29.630 22.57 19.43 38.13 3.41
1555 2438 9.628746 AAAACAAACACGTTTATAAACTCTGTT 57.371 25.926 23.00 23.00 38.13 3.16
1557 2440 9.925268 AACAAACACGTTTATAAACTCTGTTAG 57.075 29.630 25.96 14.38 36.89 2.34
1558 2441 9.316730 ACAAACACGTTTATAAACTCTGTTAGA 57.683 29.630 25.96 0.00 36.89 2.10
1562 2445 9.701098 ACACGTTTATAAACTCTGTTAGAATCA 57.299 29.630 22.57 0.00 36.77 2.57
1564 2447 9.701098 ACGTTTATAAACTCTGTTAGAATCACA 57.299 29.630 22.57 0.00 36.77 3.58
1572 2455 9.520515 AAACTCTGTTAGAATCACATACCAATT 57.479 29.630 0.00 0.00 0.00 2.32
1573 2456 9.520515 AACTCTGTTAGAATCACATACCAATTT 57.479 29.630 0.00 0.00 0.00 1.82
1574 2457 8.950210 ACTCTGTTAGAATCACATACCAATTTG 58.050 33.333 0.00 0.00 0.00 2.32
1575 2458 8.279970 TCTGTTAGAATCACATACCAATTTGG 57.720 34.615 14.02 14.02 45.02 3.28
1576 2459 7.339212 TCTGTTAGAATCACATACCAATTTGGG 59.661 37.037 19.39 4.65 43.37 4.12
1577 2460 6.127479 TGTTAGAATCACATACCAATTTGGGC 60.127 38.462 19.39 0.00 43.37 5.36
1578 2461 4.613437 AGAATCACATACCAATTTGGGCT 58.387 39.130 19.39 3.46 43.37 5.19
1579 2462 5.025453 AGAATCACATACCAATTTGGGCTT 58.975 37.500 19.39 1.47 43.37 4.35
1580 2463 4.741321 ATCACATACCAATTTGGGCTTG 57.259 40.909 19.39 14.56 43.37 4.01
1586 2469 2.460757 CCAATTTGGGCTTGGTCAAG 57.539 50.000 7.60 6.36 38.67 3.02
1587 2470 1.969923 CCAATTTGGGCTTGGTCAAGA 59.030 47.619 14.20 0.00 40.06 3.02
1588 2471 2.568509 CCAATTTGGGCTTGGTCAAGAT 59.431 45.455 14.20 0.00 40.06 2.40
1589 2472 3.368739 CCAATTTGGGCTTGGTCAAGATC 60.369 47.826 14.20 5.99 40.06 2.75
1590 2473 2.673775 TTTGGGCTTGGTCAAGATCA 57.326 45.000 14.20 8.21 40.79 2.92
1591 2474 2.673775 TTGGGCTTGGTCAAGATCAA 57.326 45.000 14.20 12.82 40.79 2.57
1592 2475 2.905415 TGGGCTTGGTCAAGATCAAT 57.095 45.000 14.20 0.00 40.79 2.57
1594 2477 1.135721 GGGCTTGGTCAAGATCAATGC 59.864 52.381 14.20 3.23 40.79 3.56
1596 2479 2.429610 GGCTTGGTCAAGATCAATGCAT 59.570 45.455 14.20 0.00 40.79 3.96
1597 2480 3.490419 GGCTTGGTCAAGATCAATGCATC 60.490 47.826 14.20 0.00 40.79 3.91
1598 2481 3.380637 GCTTGGTCAAGATCAATGCATCT 59.619 43.478 14.20 0.00 40.79 2.90
1601 2484 3.201487 TGGTCAAGATCAATGCATCTCCT 59.799 43.478 0.00 0.00 31.44 3.69
1603 2486 4.449131 GTCAAGATCAATGCATCTCCTCA 58.551 43.478 0.00 0.00 31.44 3.86
1604 2487 4.880120 GTCAAGATCAATGCATCTCCTCAA 59.120 41.667 0.00 0.00 31.44 3.02
1605 2488 5.356190 GTCAAGATCAATGCATCTCCTCAAA 59.644 40.000 0.00 0.00 31.44 2.69
1606 2489 5.589050 TCAAGATCAATGCATCTCCTCAAAG 59.411 40.000 0.00 0.00 31.44 2.77
1607 2490 3.884091 AGATCAATGCATCTCCTCAAAGC 59.116 43.478 0.00 0.00 0.00 3.51
1608 2491 2.372264 TCAATGCATCTCCTCAAAGCC 58.628 47.619 0.00 0.00 0.00 4.35
1609 2492 1.065102 CAATGCATCTCCTCAAAGCCG 59.935 52.381 0.00 0.00 0.00 5.52
1610 2493 0.543277 ATGCATCTCCTCAAAGCCGA 59.457 50.000 0.00 0.00 0.00 5.54
1611 2494 0.543277 TGCATCTCCTCAAAGCCGAT 59.457 50.000 0.00 0.00 0.00 4.18
1613 2496 2.224137 TGCATCTCCTCAAAGCCGATAG 60.224 50.000 0.00 0.00 0.00 2.08
1615 2498 3.493350 GCATCTCCTCAAAGCCGATAGAA 60.493 47.826 0.00 0.00 39.76 2.10
1616 2499 4.697514 CATCTCCTCAAAGCCGATAGAAA 58.302 43.478 0.00 0.00 39.76 2.52
1617 2500 4.819105 TCTCCTCAAAGCCGATAGAAAA 57.181 40.909 0.00 0.00 39.76 2.29
1618 2501 5.359194 TCTCCTCAAAGCCGATAGAAAAT 57.641 39.130 0.00 0.00 39.76 1.82
1619 2502 5.118990 TCTCCTCAAAGCCGATAGAAAATG 58.881 41.667 0.00 0.00 39.76 2.32
1625 2508 2.262423 GCCGATAGAAAATGGCTCCT 57.738 50.000 0.00 0.00 44.16 3.69
1626 2509 1.876156 GCCGATAGAAAATGGCTCCTG 59.124 52.381 0.00 0.00 44.16 3.86
1627 2510 2.746472 GCCGATAGAAAATGGCTCCTGT 60.746 50.000 0.00 0.00 44.16 4.00
1630 2513 3.806521 CGATAGAAAATGGCTCCTGTCTG 59.193 47.826 0.00 0.00 39.76 3.51
1631 2514 2.503895 AGAAAATGGCTCCTGTCTGG 57.496 50.000 0.00 0.00 37.10 3.86
1632 2515 1.707427 AGAAAATGGCTCCTGTCTGGT 59.293 47.619 0.00 0.00 37.07 4.00
1633 2516 1.815003 GAAAATGGCTCCTGTCTGGTG 59.185 52.381 0.00 0.00 37.07 4.17
1634 2517 0.038744 AAATGGCTCCTGTCTGGTGG 59.961 55.000 0.00 0.00 37.07 4.61
1637 2520 2.753029 GCTCCTGTCTGGTGGCTT 59.247 61.111 0.00 0.00 37.07 4.35
1638 2521 1.073897 GCTCCTGTCTGGTGGCTTT 59.926 57.895 0.00 0.00 37.07 3.51
1640 2523 0.322008 CTCCTGTCTGGTGGCTTTCC 60.322 60.000 0.00 0.00 37.07 3.13
1641 2524 0.768221 TCCTGTCTGGTGGCTTTCCT 60.768 55.000 0.00 0.00 37.07 3.36
1642 2525 0.322008 CCTGTCTGGTGGCTTTCCTC 60.322 60.000 0.00 0.00 0.00 3.71
1643 2526 0.689623 CTGTCTGGTGGCTTTCCTCT 59.310 55.000 0.00 0.00 0.00 3.69
1644 2527 1.072965 CTGTCTGGTGGCTTTCCTCTT 59.927 52.381 0.00 0.00 0.00 2.85
1645 2528 1.202806 TGTCTGGTGGCTTTCCTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
1646 2529 1.072331 GTCTGGTGGCTTTCCTCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
1647 2530 1.072331 TCTGGTGGCTTTCCTCTTGAC 59.928 52.381 0.00 0.00 0.00 3.18
1648 2531 0.110486 TGGTGGCTTTCCTCTTGACC 59.890 55.000 0.00 0.00 0.00 4.02
1649 2532 0.955919 GGTGGCTTTCCTCTTGACCG 60.956 60.000 0.00 0.00 0.00 4.79
1650 2533 1.302511 TGGCTTTCCTCTTGACCGC 60.303 57.895 0.00 0.00 0.00 5.68
1651 2534 1.302511 GGCTTTCCTCTTGACCGCA 60.303 57.895 0.00 0.00 0.00 5.69
1653 2536 0.603975 GCTTTCCTCTTGACCGCAGT 60.604 55.000 0.00 0.00 0.00 4.40
1654 2537 1.884235 CTTTCCTCTTGACCGCAGTT 58.116 50.000 0.00 0.00 0.00 3.16
1658 2541 1.597854 CTCTTGACCGCAGTTGGCA 60.598 57.895 0.00 0.00 45.17 4.92
1660 2543 1.008538 CTTGACCGCAGTTGGCAAC 60.009 57.895 22.48 22.48 45.17 4.17
1661 2544 1.447317 CTTGACCGCAGTTGGCAACT 61.447 55.000 26.54 26.54 45.17 3.16
1662 2545 1.034838 TTGACCGCAGTTGGCAACTT 61.035 50.000 29.32 15.83 45.17 2.66
1663 2546 1.282875 GACCGCAGTTGGCAACTTC 59.717 57.895 29.32 23.56 45.17 3.01
1664 2547 2.252260 CCGCAGTTGGCAACTTCG 59.748 61.111 34.72 34.72 45.53 3.79
1668 2551 1.510480 GCAGTTGGCAACTTCGAGCT 61.510 55.000 29.32 5.12 40.46 4.09
1672 3235 1.841663 TTGGCAACTTCGAGCTTCGC 61.842 55.000 0.00 0.00 37.35 4.70
1683 3246 0.861837 GAGCTTCGCCATCAATACGG 59.138 55.000 0.00 0.00 0.00 4.02
1685 3248 0.531974 GCTTCGCCATCAATACGGGA 60.532 55.000 0.00 0.00 0.00 5.14
1693 3256 3.197766 GCCATCAATACGGGATCTCCATA 59.802 47.826 0.00 0.00 37.91 2.74
1752 3315 5.858381 ACATTCTCCATCTTGTATACGCAT 58.142 37.500 0.00 0.00 0.00 4.73
1780 3344 5.512942 TGTCAGGGGTTGAATTTCTATCA 57.487 39.130 0.00 0.00 37.61 2.15
1816 3381 7.747155 TTGACCCGATGACAAGTTTTAAATA 57.253 32.000 0.00 0.00 0.00 1.40
1817 3382 7.747155 TGACCCGATGACAAGTTTTAAATAA 57.253 32.000 0.00 0.00 0.00 1.40
1818 3383 8.167605 TGACCCGATGACAAGTTTTAAATAAA 57.832 30.769 0.00 0.00 0.00 1.40
1819 3384 8.798402 TGACCCGATGACAAGTTTTAAATAAAT 58.202 29.630 0.00 0.00 0.00 1.40
1858 3708 0.930310 CATACGTGGTGAGCAATCCG 59.070 55.000 0.00 0.00 0.00 4.18
1870 3720 4.384247 GTGAGCAATCCGAATCTCGATAAG 59.616 45.833 0.00 0.00 43.74 1.73
1906 3756 4.754372 TGCTTCCATCATCGCAAATATC 57.246 40.909 0.00 0.00 0.00 1.63
1922 3772 1.275666 TATCCTATCCATGCCACGGG 58.724 55.000 0.00 0.00 0.00 5.28
1973 3823 6.913873 AATGGCTTTCATTTTCATACATGC 57.086 33.333 0.00 0.00 43.04 4.06
2014 3864 1.117150 TATACCCCGCAGACAAGTCC 58.883 55.000 0.00 0.00 0.00 3.85
2037 3888 3.917760 CCATCTCTCCCCCGCGTC 61.918 72.222 4.92 0.00 0.00 5.19
2068 3925 0.322008 GACCTGAGGAGCAAACCCTG 60.322 60.000 4.99 0.00 33.36 4.45
2120 3977 3.451556 ATGCCTGACGCCGATGGAG 62.452 63.158 0.00 0.00 36.24 3.86
2125 3982 4.933064 GACGCCGATGGAGCTCCG 62.933 72.222 27.43 16.37 39.43 4.63
2179 4039 3.444805 GCTCGTCCGCCTCTGTCT 61.445 66.667 0.00 0.00 0.00 3.41
2212 4072 4.452733 CGGTCTGGTTCCTCCGGC 62.453 72.222 0.00 0.00 42.13 6.13
2247 4107 4.373116 CCACGTGGGGTCCGAGTG 62.373 72.222 27.57 0.00 34.78 3.51
2258 4118 3.521605 CCGAGTGTCCGGCATAGA 58.478 61.111 0.00 0.00 43.25 1.98
2259 4119 1.360551 CCGAGTGTCCGGCATAGAG 59.639 63.158 0.00 0.00 43.25 2.43
2260 4120 1.384989 CCGAGTGTCCGGCATAGAGT 61.385 60.000 0.00 0.00 43.25 3.24
2315 4389 3.278157 CGAAGCAGGGGAAAAGCC 58.722 61.111 0.00 0.00 0.00 4.35
2418 4511 0.036294 GTGGCAAGTAGGGGTCAGAC 60.036 60.000 0.00 0.00 0.00 3.51
2419 4512 1.218316 GGCAAGTAGGGGTCAGACG 59.782 63.158 0.00 0.00 0.00 4.18
2428 4521 1.831736 AGGGGTCAGACGTTAATCAGG 59.168 52.381 0.00 0.00 0.00 3.86
2530 4631 0.318441 TGCTCGGACAACAGGAAGAG 59.682 55.000 0.00 0.00 0.00 2.85
2537 4638 1.289066 CAACAGGAAGAGCGTCCGA 59.711 57.895 0.00 0.00 43.03 4.55
2554 4655 7.848491 AGCGTCCGATATAAATCAGTAAAAAC 58.152 34.615 0.00 0.00 31.93 2.43
2577 4678 2.315925 ATGTCAATCGTAGTGGGCAG 57.684 50.000 0.00 0.00 0.00 4.85
2596 4697 3.371898 GCAGGAATGTTTGCCATTTTAGC 59.628 43.478 0.00 0.00 43.87 3.09
2598 4699 5.240121 CAGGAATGTTTGCCATTTTAGCTT 58.760 37.500 0.00 0.00 43.87 3.74
2599 4700 5.702209 CAGGAATGTTTGCCATTTTAGCTTT 59.298 36.000 0.00 0.00 43.87 3.51
2600 4701 6.873076 CAGGAATGTTTGCCATTTTAGCTTTA 59.127 34.615 0.00 0.00 43.87 1.85
2601 4702 6.873605 AGGAATGTTTGCCATTTTAGCTTTAC 59.126 34.615 0.00 0.00 43.87 2.01
2603 4704 7.334171 GGAATGTTTGCCATTTTAGCTTTACAT 59.666 33.333 0.00 0.00 43.87 2.29
2604 4705 9.364989 GAATGTTTGCCATTTTAGCTTTACATA 57.635 29.630 0.00 0.00 43.87 2.29
2605 4706 8.702163 ATGTTTGCCATTTTAGCTTTACATAC 57.298 30.769 0.00 0.00 30.28 2.39
2606 4707 7.093992 TGTTTGCCATTTTAGCTTTACATACC 58.906 34.615 0.00 0.00 0.00 2.73
2607 4708 5.845391 TGCCATTTTAGCTTTACATACCC 57.155 39.130 0.00 0.00 0.00 3.69
2608 4709 5.265191 TGCCATTTTAGCTTTACATACCCA 58.735 37.500 0.00 0.00 0.00 4.51
2609 4710 5.359576 TGCCATTTTAGCTTTACATACCCAG 59.640 40.000 0.00 0.00 0.00 4.45
2610 4711 5.736207 GCCATTTTAGCTTTACATACCCAGC 60.736 44.000 0.00 0.00 0.00 4.85
2611 4712 5.594317 CCATTTTAGCTTTACATACCCAGCT 59.406 40.000 0.00 0.00 44.83 4.24
2612 4713 6.096846 CCATTTTAGCTTTACATACCCAGCTT 59.903 38.462 0.00 0.00 39.69 3.74
2613 4714 6.509418 TTTTAGCTTTACATACCCAGCTTG 57.491 37.500 0.00 0.00 39.69 4.01
2614 4715 2.369394 AGCTTTACATACCCAGCTTGC 58.631 47.619 0.00 0.00 39.69 4.01
2615 4716 1.405463 GCTTTACATACCCAGCTTGCC 59.595 52.381 0.00 0.00 0.00 4.52
2616 4717 2.722094 CTTTACATACCCAGCTTGCCA 58.278 47.619 0.00 0.00 0.00 4.92
2617 4718 3.290710 CTTTACATACCCAGCTTGCCAT 58.709 45.455 0.00 0.00 0.00 4.40
2621 4722 2.234414 ACATACCCAGCTTGCCATTTTG 59.766 45.455 0.00 0.00 0.00 2.44
2631 4732 3.429881 GCTTGCCATTTTGAGCTTTACAC 59.570 43.478 0.00 0.00 32.54 2.90
2663 4764 8.452989 CTACAAAGGATGTTGCTAATGTTTTC 57.547 34.615 0.00 0.00 43.63 2.29
2721 4823 7.717875 TGTACTTAGGTTTTAAACATCACTGCT 59.282 33.333 10.14 0.00 0.00 4.24
2722 4824 9.211485 GTACTTAGGTTTTAAACATCACTGCTA 57.789 33.333 10.14 0.00 0.00 3.49
2723 4825 8.685838 ACTTAGGTTTTAAACATCACTGCTAA 57.314 30.769 10.14 5.51 0.00 3.09
2724 4826 9.127277 ACTTAGGTTTTAAACATCACTGCTAAA 57.873 29.630 10.14 0.00 0.00 1.85
2726 4828 9.906660 TTAGGTTTTAAACATCACTGCTAAATG 57.093 29.630 10.14 0.00 0.00 2.32
2727 4829 6.868339 AGGTTTTAAACATCACTGCTAAATGC 59.132 34.615 10.14 0.00 43.25 3.56
2728 4830 6.868339 GGTTTTAAACATCACTGCTAAATGCT 59.132 34.615 10.14 0.00 43.37 3.79
2783 4885 8.632551 CGAAAAGTTGAATATAAAAACCCGAAC 58.367 33.333 0.00 0.00 0.00 3.95
2809 4914 9.577110 CTGACAAATATATGCAAACTGAAACAT 57.423 29.630 0.00 0.00 0.00 2.71
2822 4927 5.376854 ACTGAAACATGCCACTTAATGTC 57.623 39.130 0.00 0.00 35.99 3.06
2905 5014 4.673968 TGGAGTCTGGAGTGTACACTTAT 58.326 43.478 28.49 8.02 42.66 1.73
3179 5329 5.163301 ACCGATATATTCCCTATGTGATGGC 60.163 44.000 0.00 0.00 0.00 4.40
3224 5411 1.394697 GTGTTCGCATTGGTTTGTCG 58.605 50.000 0.00 0.00 0.00 4.35
3448 5645 5.045066 TCCAGGTCAGAAGCTCTTACTACTA 60.045 44.000 0.00 0.00 0.00 1.82
3450 5647 5.298276 CAGGTCAGAAGCTCTTACTACTAGG 59.702 48.000 0.00 0.00 0.00 3.02
3758 5970 2.352715 GGCACCAATAGCACCAGTTTTC 60.353 50.000 0.00 0.00 0.00 2.29
3759 5971 2.352715 GCACCAATAGCACCAGTTTTCC 60.353 50.000 0.00 0.00 0.00 3.13
3808 6020 2.698274 GGTTTCCAACACCAAGAACCAT 59.302 45.455 0.00 0.00 34.04 3.55
3961 6173 4.972733 TGCGCTGGCATGGGTTGT 62.973 61.111 9.73 0.00 46.21 3.32
4066 6278 3.117738 AGTCTTTTAGCCCATGCAGCTAT 60.118 43.478 14.32 0.00 42.21 2.97
4078 6290 1.528161 TGCAGCTATTCATTCATCGCG 59.472 47.619 0.00 0.00 0.00 5.87
4209 6421 0.534203 TGTTCGGAAGCCACCAAGAC 60.534 55.000 0.00 0.00 0.00 3.01
4411 6623 0.991920 TTGCGGGGAATTTCTCCTCT 59.008 50.000 13.43 0.00 43.57 3.69
4412 6624 1.874129 TGCGGGGAATTTCTCCTCTA 58.126 50.000 13.43 0.00 43.57 2.43
4413 6625 2.408565 TGCGGGGAATTTCTCCTCTAT 58.591 47.619 13.43 0.00 43.57 1.98
4414 6626 3.583228 TGCGGGGAATTTCTCCTCTATA 58.417 45.455 13.43 0.00 43.57 1.31
5355 7607 6.425504 CACTCTCTTTCATTTTATCCATCGC 58.574 40.000 0.00 0.00 0.00 4.58
5385 7637 2.765807 CCACCTCCCTCGCTGGAT 60.766 66.667 0.00 0.00 38.35 3.41
5748 8000 2.048127 GCGTCGTCCTTCCTGCTT 60.048 61.111 0.00 0.00 0.00 3.91
5818 8073 3.461773 CCGGGATGGAGACGCTGT 61.462 66.667 0.00 0.00 42.00 4.40
5839 8094 0.896226 GGGAGAAGTTACCGAGCTGT 59.104 55.000 0.00 0.00 0.00 4.40
5982 8237 0.107459 GTCTGGTCATTGGCTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
5983 8238 1.153289 CTGGTCATTGGCTCCTCCG 60.153 63.158 0.00 0.00 37.80 4.63
6078 8333 6.864421 AGGTATAGAGACACCCAGATGATAA 58.136 40.000 0.00 0.00 35.25 1.75
6107 8366 5.733226 TTGATTATTACACCATGCGAGTG 57.267 39.130 0.00 0.00 41.15 3.51
6125 8384 3.326747 AGTGGTATTGCGAAGAGTGTTC 58.673 45.455 0.00 0.00 0.00 3.18
6143 8402 2.584608 GAGGCCTGGCGCTTCTAA 59.415 61.111 12.00 0.00 40.37 2.10
6148 8407 2.840651 AGGCCTGGCGCTTCTAATATAT 59.159 45.455 3.11 0.00 37.74 0.86
6154 8413 7.434492 GCCTGGCGCTTCTAATATATTATCTA 58.566 38.462 7.64 0.00 0.00 1.98
6242 8513 6.474819 TGTCACAACATTTATAGAACGGTG 57.525 37.500 0.00 0.00 0.00 4.94
6277 8589 7.700656 GGGATATTTGACCTTGTTCGTTTATTG 59.299 37.037 0.00 0.00 0.00 1.90
6445 8757 2.157738 ACATGTCAGGCTCTTTCAAGC 58.842 47.619 0.00 0.00 41.73 4.01
6495 8809 3.602483 TGAGTGAAAGGGGTTATTACGC 58.398 45.455 0.00 0.00 36.54 4.42
6569 8906 4.026886 GTGTTTGAAATTTCAAGTCGGTGC 60.027 41.667 27.52 15.60 46.68 5.01
6570 8907 2.679355 TGAAATTTCAAGTCGGTGCG 57.321 45.000 18.45 0.00 33.55 5.34
6602 8940 3.002038 ACACCCGGTGAACAGTAAAAA 57.998 42.857 24.80 0.00 36.96 1.94
6642 8994 3.020984 ACGATTTTTGTGTGGTCCAAGT 58.979 40.909 0.00 0.00 0.00 3.16
6649 9001 1.133823 TGTGTGGTCCAAGTTGCTCAT 60.134 47.619 0.00 0.00 0.00 2.90
6661 9013 3.225104 AGTTGCTCATGTGGTGATGTTT 58.775 40.909 0.00 0.00 35.97 2.83
6664 9016 3.749226 TGCTCATGTGGTGATGTTTGTA 58.251 40.909 0.00 0.00 35.97 2.41
6669 9021 6.647334 TCATGTGGTGATGTTTGTACAAAT 57.353 33.333 23.11 9.17 37.91 2.32
6702 9054 0.620556 GGACATTCCAGGAGCTTGGA 59.379 55.000 2.82 2.82 45.34 3.53
6730 9083 5.147330 AGGACAATATCGAGTGTGAACAA 57.853 39.130 4.10 0.00 33.05 2.83
6818 9171 6.173339 TGTCCAAACTTAACCAAATTTTGCA 58.827 32.000 3.50 0.00 36.75 4.08
6856 9210 3.780925 GCATCTTGCACCACAGAAC 57.219 52.632 0.00 0.00 44.26 3.01
6857 9211 0.242017 GCATCTTGCACCACAGAACC 59.758 55.000 0.00 0.00 44.26 3.62
6864 9218 4.646945 TCTTGCACCACAGAACCAAAAATA 59.353 37.500 0.00 0.00 0.00 1.40
6911 9265 5.603170 ATGAGCCCATGTTTGGATAAAAG 57.397 39.130 0.00 0.00 46.92 2.27
6916 9271 4.438744 GCCCATGTTTGGATAAAAGAGACG 60.439 45.833 0.00 0.00 46.92 4.18
7002 9362 1.414866 GGAGGGAGGGATGCCTTCTC 61.415 65.000 21.34 21.34 32.55 2.87
7019 9379 1.569548 TCTCGATTACTGAGGGGAGGT 59.430 52.381 0.00 0.00 34.19 3.85
7020 9380 1.683917 CTCGATTACTGAGGGGAGGTG 59.316 57.143 0.00 0.00 0.00 4.00
7021 9381 1.006758 TCGATTACTGAGGGGAGGTGT 59.993 52.381 0.00 0.00 0.00 4.16
7022 9382 1.409427 CGATTACTGAGGGGAGGTGTC 59.591 57.143 0.00 0.00 0.00 3.67
7023 9383 1.763545 GATTACTGAGGGGAGGTGTCC 59.236 57.143 0.00 0.00 43.05 4.02
7024 9384 0.613853 TTACTGAGGGGAGGTGTCCG 60.614 60.000 0.00 0.00 45.05 4.79
7035 9395 2.624264 GTGTCCGCACACGAACAC 59.376 61.111 0.00 0.00 43.63 3.32
7036 9396 2.586635 TGTCCGCACACGAACACC 60.587 61.111 0.00 0.00 43.93 4.16
7037 9397 2.279918 GTCCGCACACGAACACCT 60.280 61.111 0.00 0.00 43.93 4.00
7038 9398 2.028484 TCCGCACACGAACACCTC 59.972 61.111 0.00 0.00 43.93 3.85
7039 9399 2.279851 CCGCACACGAACACCTCA 60.280 61.111 0.00 0.00 43.93 3.86
7040 9400 1.667830 CCGCACACGAACACCTCAT 60.668 57.895 0.00 0.00 43.93 2.90
7041 9401 1.227999 CCGCACACGAACACCTCATT 61.228 55.000 0.00 0.00 43.93 2.57
7042 9402 0.110688 CGCACACGAACACCTCATTG 60.111 55.000 0.00 0.00 43.93 2.82
7043 9403 0.944386 GCACACGAACACCTCATTGT 59.056 50.000 0.00 0.00 0.00 2.71
7044 9404 1.334059 GCACACGAACACCTCATTGTG 60.334 52.381 0.00 0.00 39.31 3.33
7052 9412 2.010145 CACCTCATTGTGTACCCTCG 57.990 55.000 0.00 0.00 0.00 4.63
7053 9413 1.548719 CACCTCATTGTGTACCCTCGA 59.451 52.381 0.00 0.00 0.00 4.04
7054 9414 1.549170 ACCTCATTGTGTACCCTCGAC 59.451 52.381 0.00 0.00 0.00 4.20
7055 9415 1.548719 CCTCATTGTGTACCCTCGACA 59.451 52.381 0.00 0.00 0.00 4.35
7056 9416 2.607187 CTCATTGTGTACCCTCGACAC 58.393 52.381 0.00 0.00 46.07 3.67
7057 9417 1.274167 TCATTGTGTACCCTCGACACC 59.726 52.381 3.64 0.00 45.43 4.16
7058 9418 0.245539 ATTGTGTACCCTCGACACCG 59.754 55.000 3.64 0.00 45.43 4.94
7059 9419 1.808531 TTGTGTACCCTCGACACCGG 61.809 60.000 0.00 0.00 45.43 5.28
7060 9420 2.677524 TGTACCCTCGACACCGGG 60.678 66.667 6.32 5.93 46.26 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.826893 AACAGTTTAAACAACATCATGTGC 57.173 33.333 20.06 0.00 32.81 4.57
67 68 9.968870 ACACTAAACAGTTTCAAAAACTTACAA 57.031 25.926 0.48 0.00 0.00 2.41
83 84 3.318017 AGCGCTACTCAACACTAAACAG 58.682 45.455 8.99 0.00 0.00 3.16
123 124 8.099364 ACAACACCATCTAAAACATAGACAAG 57.901 34.615 0.00 0.00 0.00 3.16
127 128 7.936847 ACTTGACAACACCATCTAAAACATAGA 59.063 33.333 0.00 0.00 0.00 1.98
135 136 5.456548 TCGTACTTGACAACACCATCTAA 57.543 39.130 0.00 0.00 0.00 2.10
173 289 7.834803 AGAGATCCAAAATAGCAAAAGGAAAG 58.165 34.615 0.00 0.00 0.00 2.62
176 292 8.055181 ACATAGAGATCCAAAATAGCAAAAGGA 58.945 33.333 0.00 0.00 0.00 3.36
190 306 7.981789 GTCTTCAATGTAACACATAGAGATCCA 59.018 37.037 0.00 0.00 37.97 3.41
221 484 4.142138 CCGGATGAAGCTAGAACAAGTACT 60.142 45.833 0.00 0.00 0.00 2.73
243 506 0.608035 TGGATTGGTTCAACCTCGCC 60.608 55.000 8.40 6.67 39.58 5.54
274 537 4.495472 GGAACGAAACATATGCATCAAACG 59.505 41.667 0.19 5.95 0.00 3.60
293 556 4.425577 AAGTCATTGCTCATTTCGGAAC 57.574 40.909 0.00 0.00 0.00 3.62
300 563 6.810182 GCACTAATTCAAAGTCATTGCTCATT 59.190 34.615 0.00 0.00 38.98 2.57
309 572 8.028354 CACCATTAATGCACTAATTCAAAGTCA 58.972 33.333 10.11 0.00 0.00 3.41
353 621 4.951254 TGAAAACCGTACTGAAGTCATCA 58.049 39.130 0.00 0.00 36.38 3.07
354 622 5.227908 TCTGAAAACCGTACTGAAGTCATC 58.772 41.667 0.00 0.00 0.00 2.92
355 623 5.209818 TCTGAAAACCGTACTGAAGTCAT 57.790 39.130 0.00 0.00 0.00 3.06
361 629 4.951254 TGTTCATCTGAAAACCGTACTGA 58.049 39.130 0.00 0.00 35.58 3.41
366 634 4.151689 CACGTATGTTCATCTGAAAACCGT 59.848 41.667 0.00 0.00 34.52 4.83
393 661 3.528370 CCGTGAGCTACTCCCCGG 61.528 72.222 0.00 0.00 37.54 5.73
394 662 2.754658 ACCGTGAGCTACTCCCCG 60.755 66.667 0.00 0.00 0.00 5.73
400 668 0.179169 GACCGAAGACCGTGAGCTAC 60.179 60.000 0.00 0.00 36.31 3.58
407 675 1.532316 TTCCCAGACCGAAGACCGT 60.532 57.895 0.00 0.00 36.31 4.83
417 685 5.045066 AGTTTAGTTTATCCCCTTCCCAGAC 60.045 44.000 0.00 0.00 0.00 3.51
428 696 7.533426 TCTCACACGTCTAGTTTAGTTTATCC 58.467 38.462 0.00 0.00 0.00 2.59
448 716 7.041635 TCTGATCTCTGATCTCAATTCTCAC 57.958 40.000 8.71 0.00 0.00 3.51
520 788 4.749598 GGCTTGTTGTTTAATTTGGACAGG 59.250 41.667 0.00 0.00 0.00 4.00
592 860 9.832445 AGTGAGTTTGACTTTGACTAAATCTTA 57.168 29.630 0.00 0.00 0.00 2.10
593 861 8.738645 AGTGAGTTTGACTTTGACTAAATCTT 57.261 30.769 0.00 0.00 0.00 2.40
594 862 9.832445 TTAGTGAGTTTGACTTTGACTAAATCT 57.168 29.630 0.00 0.00 29.53 2.40
597 865 9.444600 ACTTTAGTGAGTTTGACTTTGACTAAA 57.555 29.630 0.00 0.00 35.14 1.85
598 866 9.444600 AACTTTAGTGAGTTTGACTTTGACTAA 57.555 29.630 0.00 0.00 36.49 2.24
599 867 9.444600 AAACTTTAGTGAGTTTGACTTTGACTA 57.555 29.630 2.51 0.00 45.46 2.59
600 868 7.923414 AACTTTAGTGAGTTTGACTTTGACT 57.077 32.000 0.00 0.00 36.49 3.41
643 911 9.197694 GCTTCAGTATCGTAGATGTTGATATTT 57.802 33.333 0.00 0.00 45.12 1.40
644 912 8.580720 AGCTTCAGTATCGTAGATGTTGATATT 58.419 33.333 0.00 0.00 45.12 1.28
645 913 8.116651 AGCTTCAGTATCGTAGATGTTGATAT 57.883 34.615 0.00 0.00 45.12 1.63
646 914 7.511959 AGCTTCAGTATCGTAGATGTTGATA 57.488 36.000 0.00 0.00 45.12 2.15
647 915 6.398234 AGCTTCAGTATCGTAGATGTTGAT 57.602 37.500 0.00 0.00 45.12 2.57
648 916 5.836821 AGCTTCAGTATCGTAGATGTTGA 57.163 39.130 0.00 0.00 45.12 3.18
649 917 9.283420 CATATAGCTTCAGTATCGTAGATGTTG 57.717 37.037 0.00 0.00 45.12 3.33
650 918 8.462811 CCATATAGCTTCAGTATCGTAGATGTT 58.537 37.037 0.00 0.00 45.12 2.71
651 919 7.612244 ACCATATAGCTTCAGTATCGTAGATGT 59.388 37.037 0.00 0.00 45.12 3.06
652 920 7.990917 ACCATATAGCTTCAGTATCGTAGATG 58.009 38.462 0.00 0.00 45.12 2.90
653 921 9.854668 ATACCATATAGCTTCAGTATCGTAGAT 57.145 33.333 0.00 0.00 45.12 1.98
654 922 9.110502 CATACCATATAGCTTCAGTATCGTAGA 57.889 37.037 0.00 0.00 45.75 2.59
655 923 9.110502 TCATACCATATAGCTTCAGTATCGTAG 57.889 37.037 0.00 0.00 0.00 3.51
656 924 9.457436 TTCATACCATATAGCTTCAGTATCGTA 57.543 33.333 0.00 0.00 0.00 3.43
657 925 7.939784 TCATACCATATAGCTTCAGTATCGT 57.060 36.000 0.00 0.00 0.00 3.73
658 926 9.639601 TTTTCATACCATATAGCTTCAGTATCG 57.360 33.333 0.00 0.00 0.00 2.92
770 1038 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
771 1039 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
772 1040 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
773 1041 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
774 1042 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
775 1043 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
776 1044 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
777 1045 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
778 1046 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
779 1047 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
787 1055 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
788 1056 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
789 1057 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
790 1058 8.255206 TCTCCGTTTCTTTTTAGTCTGCATATA 58.745 33.333 0.00 0.00 0.00 0.86
791 1059 7.103641 TCTCCGTTTCTTTTTAGTCTGCATAT 58.896 34.615 0.00 0.00 0.00 1.78
792 1060 6.460781 TCTCCGTTTCTTTTTAGTCTGCATA 58.539 36.000 0.00 0.00 0.00 3.14
793 1061 5.305585 TCTCCGTTTCTTTTTAGTCTGCAT 58.694 37.500 0.00 0.00 0.00 3.96
794 1062 4.699637 TCTCCGTTTCTTTTTAGTCTGCA 58.300 39.130 0.00 0.00 0.00 4.41
795 1063 4.989168 TCTCTCCGTTTCTTTTTAGTCTGC 59.011 41.667 0.00 0.00 0.00 4.26
796 1064 6.217294 ACTCTCTCCGTTTCTTTTTAGTCTG 58.783 40.000 0.00 0.00 0.00 3.51
797 1065 6.408107 ACTCTCTCCGTTTCTTTTTAGTCT 57.592 37.500 0.00 0.00 0.00 3.24
798 1066 7.369607 AGTACTCTCTCCGTTTCTTTTTAGTC 58.630 38.462 0.00 0.00 0.00 2.59
799 1067 7.287512 AGTACTCTCTCCGTTTCTTTTTAGT 57.712 36.000 0.00 0.00 0.00 2.24
800 1068 8.488764 CAAAGTACTCTCTCCGTTTCTTTTTAG 58.511 37.037 0.00 0.00 0.00 1.85
801 1069 7.983484 ACAAAGTACTCTCTCCGTTTCTTTTTA 59.017 33.333 0.00 0.00 0.00 1.52
802 1070 6.822170 ACAAAGTACTCTCTCCGTTTCTTTTT 59.178 34.615 0.00 0.00 0.00 1.94
803 1071 6.346896 ACAAAGTACTCTCTCCGTTTCTTTT 58.653 36.000 0.00 0.00 0.00 2.27
804 1072 5.915175 ACAAAGTACTCTCTCCGTTTCTTT 58.085 37.500 0.00 0.00 0.00 2.52
805 1073 5.532664 ACAAAGTACTCTCTCCGTTTCTT 57.467 39.130 0.00 0.00 0.00 2.52
806 1074 5.532664 AACAAAGTACTCTCTCCGTTTCT 57.467 39.130 0.00 0.00 0.00 2.52
807 1075 5.751990 TGAAACAAAGTACTCTCTCCGTTTC 59.248 40.000 16.60 16.60 38.07 2.78
808 1076 5.522824 GTGAAACAAAGTACTCTCTCCGTTT 59.477 40.000 0.00 0.28 36.32 3.60
809 1077 5.048507 GTGAAACAAAGTACTCTCTCCGTT 58.951 41.667 0.00 0.00 36.32 4.44
810 1078 4.618965 GTGAAACAAAGTACTCTCTCCGT 58.381 43.478 0.00 0.00 36.32 4.69
837 1105 3.705579 CACTCAAGTCTCCTGGATCATCT 59.294 47.826 0.00 0.00 0.00 2.90
838 1106 3.740764 GCACTCAAGTCTCCTGGATCATC 60.741 52.174 0.00 0.00 0.00 2.92
899 1168 5.697633 AGGGTTATTTGTGTGTGTACTTACG 59.302 40.000 0.00 0.00 0.00 3.18
900 1169 6.128742 CGAGGGTTATTTGTGTGTGTACTTAC 60.129 42.308 0.00 0.00 0.00 2.34
908 1177 2.264005 TGCGAGGGTTATTTGTGTGT 57.736 45.000 0.00 0.00 0.00 3.72
935 1206 3.301579 CGACCGTTTATTATGCGACTGTG 60.302 47.826 0.00 0.00 0.00 3.66
950 1221 1.352753 GGTTTGTTTCGCGACCGTT 59.647 52.632 9.15 0.00 35.54 4.44
956 1227 1.286354 TAGCTCCGGTTTGTTTCGCG 61.286 55.000 0.00 0.00 0.00 5.87
971 1244 3.794475 GCGTATGAATGTACGGTGTAGCT 60.794 47.826 8.31 0.00 45.57 3.32
980 1253 6.420903 ACTCATGTATGTGCGTATGAATGTAC 59.579 38.462 0.00 0.00 0.00 2.90
986 1259 4.119136 CCAACTCATGTATGTGCGTATGA 58.881 43.478 0.00 0.00 0.00 2.15
992 1265 3.125829 CAGTGACCAACTCATGTATGTGC 59.874 47.826 0.00 0.00 36.83 4.57
1003 1280 0.398318 GGAGGAAGCAGTGACCAACT 59.602 55.000 0.00 0.00 40.93 3.16
1015 1292 5.443230 AGGAAATTCTTACCTGGAGGAAG 57.557 43.478 0.00 0.99 38.94 3.46
1016 1293 5.281037 GGAAGGAAATTCTTACCTGGAGGAA 60.281 44.000 0.00 2.00 38.07 3.36
1017 1294 4.227527 GGAAGGAAATTCTTACCTGGAGGA 59.772 45.833 0.00 0.00 38.07 3.71
1040 1317 1.178276 CAGGGTAGCTATCTAGGCCG 58.822 60.000 3.53 0.00 0.00 6.13
1048 1325 6.808321 TTACAGAATGAACAGGGTAGCTAT 57.192 37.500 0.00 0.00 39.69 2.97
1053 1330 6.833041 TGTTCTTTACAGAATGAACAGGGTA 58.167 36.000 12.49 0.00 46.59 3.69
1063 1355 5.239525 GCTTGGAGTGTGTTCTTTACAGAAT 59.760 40.000 0.00 0.00 41.26 2.40
1066 1358 3.059597 CGCTTGGAGTGTGTTCTTTACAG 60.060 47.826 0.00 0.00 37.45 2.74
1090 1382 7.455058 ACTCTCTACACTCTCTACAGAAAGAA 58.545 38.462 0.00 0.00 0.00 2.52
1091 1383 7.011499 ACTCTCTACACTCTCTACAGAAAGA 57.989 40.000 0.00 0.00 0.00 2.52
1092 1384 7.526608 CAACTCTCTACACTCTCTACAGAAAG 58.473 42.308 0.00 0.00 0.00 2.62
1093 1385 6.072397 GCAACTCTCTACACTCTCTACAGAAA 60.072 42.308 0.00 0.00 0.00 2.52
1094 1386 5.413213 GCAACTCTCTACACTCTCTACAGAA 59.587 44.000 0.00 0.00 0.00 3.02
1095 1387 4.938832 GCAACTCTCTACACTCTCTACAGA 59.061 45.833 0.00 0.00 0.00 3.41
1096 1388 4.095782 GGCAACTCTCTACACTCTCTACAG 59.904 50.000 0.00 0.00 0.00 2.74
1097 1389 4.011023 GGCAACTCTCTACACTCTCTACA 58.989 47.826 0.00 0.00 0.00 2.74
1098 1390 3.379057 GGGCAACTCTCTACACTCTCTAC 59.621 52.174 0.00 0.00 0.00 2.59
1100 1392 2.452505 GGGCAACTCTCTACACTCTCT 58.547 52.381 0.00 0.00 0.00 3.10
1101 1393 1.478916 GGGGCAACTCTCTACACTCTC 59.521 57.143 0.00 0.00 0.00 3.20
1102 1394 1.562783 GGGGCAACTCTCTACACTCT 58.437 55.000 0.00 0.00 0.00 3.24
1103 1395 0.537653 GGGGGCAACTCTCTACACTC 59.462 60.000 0.00 0.00 37.10 3.51
1104 1396 0.117340 AGGGGGCAACTCTCTACACT 59.883 55.000 0.00 0.00 37.10 3.55
1105 1397 0.984995 AAGGGGGCAACTCTCTACAC 59.015 55.000 0.00 0.00 37.10 2.90
1144 1436 8.628882 TTAGAAAAGAGCAACTAAAAAGCAAC 57.371 30.769 0.00 0.00 0.00 4.17
1146 1438 7.284489 TCCTTAGAAAAGAGCAACTAAAAAGCA 59.716 33.333 0.00 0.00 34.37 3.91
1154 1452 5.885912 TGTGTTTCCTTAGAAAAGAGCAACT 59.114 36.000 0.00 0.00 43.48 3.16
1171 1469 7.096065 GCAAAATAAACTCATGGAGTGTGTTTC 60.096 37.037 10.46 0.00 46.11 2.78
1252 1550 5.461032 TTCCCACAAATAACATCAACACC 57.539 39.130 0.00 0.00 0.00 4.16
1268 1566 1.135286 GCATTAGCAACAGCTTCCCAC 60.135 52.381 0.00 0.00 39.77 4.61
1284 1582 2.446435 AGTAACCTTTCGCCATGCATT 58.554 42.857 0.00 0.00 0.00 3.56
1285 1583 2.128771 AGTAACCTTTCGCCATGCAT 57.871 45.000 0.00 0.00 0.00 3.96
1286 1584 2.772077 TAGTAACCTTTCGCCATGCA 57.228 45.000 0.00 0.00 0.00 3.96
1293 1591 7.352739 GTTCATATGGCAATAGTAACCTTTCG 58.647 38.462 2.13 0.00 0.00 3.46
1302 1600 4.342862 AGAGCGTTCATATGGCAATAGT 57.657 40.909 2.13 0.00 0.00 2.12
1303 1601 5.679734 AAAGAGCGTTCATATGGCAATAG 57.320 39.130 2.13 0.00 0.00 1.73
1341 1639 7.271511 ACAAACTTGAAAAATTGTGCATCCTA 58.728 30.769 0.00 0.00 35.44 2.94
1365 1664 6.255950 GGCGAAATAGGTGAAAGTTTCATAC 58.744 40.000 20.72 16.16 42.47 2.39
1366 1665 5.064198 CGGCGAAATAGGTGAAAGTTTCATA 59.936 40.000 20.72 10.92 42.47 2.15
1399 1698 4.334481 CGAAAGCCTTTTTCGGTATGGTAT 59.666 41.667 12.72 0.00 45.17 2.73
1400 1699 3.685756 CGAAAGCCTTTTTCGGTATGGTA 59.314 43.478 12.72 0.00 45.17 3.25
1401 1700 2.486592 CGAAAGCCTTTTTCGGTATGGT 59.513 45.455 12.72 0.00 45.17 3.55
1402 1701 3.131240 CGAAAGCCTTTTTCGGTATGG 57.869 47.619 12.72 0.00 45.17 2.74
1415 1894 4.852609 TTTATAAAGCGAGACGAAAGCC 57.147 40.909 0.00 0.00 0.00 4.35
1423 1902 7.964011 CGGTTTGGTTTATTTTATAAAGCGAGA 59.036 33.333 12.02 3.76 45.88 4.04
1425 1904 6.527372 GCGGTTTGGTTTATTTTATAAAGCGA 59.473 34.615 18.98 10.39 45.88 4.93
1435 1914 3.554129 GCTCTTGGCGGTTTGGTTTATTT 60.554 43.478 0.00 0.00 0.00 1.40
1437 1916 1.544246 GCTCTTGGCGGTTTGGTTTAT 59.456 47.619 0.00 0.00 0.00 1.40
1438 1917 0.955905 GCTCTTGGCGGTTTGGTTTA 59.044 50.000 0.00 0.00 0.00 2.01
1441 1920 2.597510 GGCTCTTGGCGGTTTGGT 60.598 61.111 0.00 0.00 42.94 3.67
1451 2068 1.802960 GATATGATGGTGCGGCTCTTG 59.197 52.381 0.00 0.00 0.00 3.02
1457 2074 4.005650 AGCTTTATGATATGATGGTGCGG 58.994 43.478 0.00 0.00 0.00 5.69
1458 2075 4.201656 CGAGCTTTATGATATGATGGTGCG 60.202 45.833 0.00 0.00 0.00 5.34
1460 2077 5.061435 CGTCGAGCTTTATGATATGATGGTG 59.939 44.000 0.00 0.00 0.00 4.17
1462 2079 4.564372 CCGTCGAGCTTTATGATATGATGG 59.436 45.833 0.00 0.00 0.00 3.51
1471 2088 2.203800 TGCTACCGTCGAGCTTTATG 57.796 50.000 7.37 0.00 40.76 1.90
1483 2100 0.725117 GGTTTTCCGACATGCTACCG 59.275 55.000 0.00 0.00 0.00 4.02
1490 2107 1.064685 GGAGATGGGGTTTTCCGACAT 60.065 52.381 0.00 0.00 41.82 3.06
1522 2405 0.734309 ACGTGTTTGTTTTCGGGGAC 59.266 50.000 0.00 0.00 0.00 4.46
1523 2406 1.461559 AACGTGTTTGTTTTCGGGGA 58.538 45.000 0.00 0.00 0.00 4.81
1532 2415 9.316730 TCTAACAGAGTTTATAAACGTGTTTGT 57.683 29.630 33.42 24.43 42.78 2.83
1537 2420 9.953825 GTGATTCTAACAGAGTTTATAAACGTG 57.046 33.333 22.32 22.32 43.51 4.49
1547 2430 9.520515 AAATTGGTATGTGATTCTAACAGAGTT 57.479 29.630 0.00 0.00 0.00 3.01
1548 2431 8.950210 CAAATTGGTATGTGATTCTAACAGAGT 58.050 33.333 0.00 0.00 0.00 3.24
1549 2432 8.400947 CCAAATTGGTATGTGATTCTAACAGAG 58.599 37.037 3.34 0.00 31.35 3.35
1550 2433 7.339212 CCCAAATTGGTATGTGATTCTAACAGA 59.661 37.037 11.52 0.00 35.17 3.41
1553 2436 6.096846 AGCCCAAATTGGTATGTGATTCTAAC 59.903 38.462 11.52 0.00 35.17 2.34
1554 2437 6.194235 AGCCCAAATTGGTATGTGATTCTAA 58.806 36.000 11.52 0.00 35.17 2.10
1555 2438 5.765510 AGCCCAAATTGGTATGTGATTCTA 58.234 37.500 11.52 0.00 35.17 2.10
1556 2439 4.613437 AGCCCAAATTGGTATGTGATTCT 58.387 39.130 11.52 0.00 35.17 2.40
1557 2440 5.111293 CAAGCCCAAATTGGTATGTGATTC 58.889 41.667 11.52 0.00 35.17 2.52
1558 2441 4.080975 CCAAGCCCAAATTGGTATGTGATT 60.081 41.667 11.52 0.00 41.94 2.57
1560 2443 2.830923 CCAAGCCCAAATTGGTATGTGA 59.169 45.455 11.52 0.00 41.94 3.58
1561 2444 3.249986 CCAAGCCCAAATTGGTATGTG 57.750 47.619 11.52 3.60 41.94 3.21
1568 2451 3.258872 TGATCTTGACCAAGCCCAAATTG 59.741 43.478 4.94 0.00 38.28 2.32
1569 2452 3.509442 TGATCTTGACCAAGCCCAAATT 58.491 40.909 4.94 0.00 38.28 1.82
1570 2453 3.173953 TGATCTTGACCAAGCCCAAAT 57.826 42.857 4.94 0.00 38.28 2.32
1571 2454 2.673775 TGATCTTGACCAAGCCCAAA 57.326 45.000 4.94 0.00 38.28 3.28
1572 2455 2.673775 TTGATCTTGACCAAGCCCAA 57.326 45.000 4.94 8.21 38.28 4.12
1573 2456 2.449464 CATTGATCTTGACCAAGCCCA 58.551 47.619 4.94 3.11 38.28 5.36
1574 2457 1.135721 GCATTGATCTTGACCAAGCCC 59.864 52.381 4.94 0.77 38.28 5.19
1575 2458 1.820519 TGCATTGATCTTGACCAAGCC 59.179 47.619 4.94 1.08 38.28 4.35
1576 2459 3.380637 AGATGCATTGATCTTGACCAAGC 59.619 43.478 0.00 0.00 38.28 4.01
1577 2460 4.036498 GGAGATGCATTGATCTTGACCAAG 59.964 45.833 0.00 3.47 39.71 3.61
1578 2461 3.949754 GGAGATGCATTGATCTTGACCAA 59.050 43.478 0.00 0.00 32.57 3.67
1579 2462 3.201487 AGGAGATGCATTGATCTTGACCA 59.799 43.478 0.00 0.00 32.57 4.02
1580 2463 3.814283 GAGGAGATGCATTGATCTTGACC 59.186 47.826 0.00 0.00 32.57 4.02
1581 2464 4.449131 TGAGGAGATGCATTGATCTTGAC 58.551 43.478 0.00 0.00 32.57 3.18
1582 2465 4.765813 TGAGGAGATGCATTGATCTTGA 57.234 40.909 0.00 0.00 32.57 3.02
1583 2466 5.733655 GCTTTGAGGAGATGCATTGATCTTG 60.734 44.000 0.00 0.00 32.57 3.02
1584 2467 4.338682 GCTTTGAGGAGATGCATTGATCTT 59.661 41.667 0.00 0.00 32.57 2.40
1585 2468 3.884091 GCTTTGAGGAGATGCATTGATCT 59.116 43.478 0.00 0.00 35.27 2.75
1586 2469 3.004524 GGCTTTGAGGAGATGCATTGATC 59.995 47.826 0.00 0.00 0.00 2.92
1587 2470 2.957006 GGCTTTGAGGAGATGCATTGAT 59.043 45.455 0.00 0.00 0.00 2.57
1588 2471 2.372264 GGCTTTGAGGAGATGCATTGA 58.628 47.619 0.00 0.00 0.00 2.57
1589 2472 1.065102 CGGCTTTGAGGAGATGCATTG 59.935 52.381 0.00 0.00 0.00 2.82
1590 2473 1.065199 TCGGCTTTGAGGAGATGCATT 60.065 47.619 0.00 0.00 0.00 3.56
1591 2474 0.543277 TCGGCTTTGAGGAGATGCAT 59.457 50.000 0.00 0.00 0.00 3.96
1592 2475 0.543277 ATCGGCTTTGAGGAGATGCA 59.457 50.000 0.00 0.00 0.00 3.96
1594 2477 4.327982 TTCTATCGGCTTTGAGGAGATG 57.672 45.455 0.00 0.00 0.00 2.90
1596 2479 4.819105 TTTTCTATCGGCTTTGAGGAGA 57.181 40.909 0.00 0.00 0.00 3.71
1597 2480 4.274459 CCATTTTCTATCGGCTTTGAGGAG 59.726 45.833 0.00 0.00 0.00 3.69
1598 2481 4.199310 CCATTTTCTATCGGCTTTGAGGA 58.801 43.478 0.00 0.00 0.00 3.71
1606 2489 1.876156 CAGGAGCCATTTTCTATCGGC 59.124 52.381 0.00 0.00 45.23 5.54
1607 2490 3.134458 GACAGGAGCCATTTTCTATCGG 58.866 50.000 0.00 0.00 0.00 4.18
1608 2491 3.806521 CAGACAGGAGCCATTTTCTATCG 59.193 47.826 0.00 0.00 0.00 2.92
1609 2492 4.133078 CCAGACAGGAGCCATTTTCTATC 58.867 47.826 0.00 0.00 41.22 2.08
1610 2493 3.525199 ACCAGACAGGAGCCATTTTCTAT 59.475 43.478 0.00 0.00 41.22 1.98
1611 2494 2.912956 ACCAGACAGGAGCCATTTTCTA 59.087 45.455 0.00 0.00 41.22 2.10
1613 2496 1.815003 CACCAGACAGGAGCCATTTTC 59.185 52.381 0.00 0.00 41.22 2.29
1615 2498 0.038744 CCACCAGACAGGAGCCATTT 59.961 55.000 0.00 0.00 41.22 2.32
1616 2499 1.687612 CCACCAGACAGGAGCCATT 59.312 57.895 0.00 0.00 41.22 3.16
1617 2500 2.976490 GCCACCAGACAGGAGCCAT 61.976 63.158 0.00 0.00 41.22 4.40
1618 2501 3.640407 GCCACCAGACAGGAGCCA 61.640 66.667 0.00 0.00 41.22 4.75
1619 2502 2.417558 AAAGCCACCAGACAGGAGCC 62.418 60.000 0.00 0.00 41.22 4.70
1621 2504 0.322008 GGAAAGCCACCAGACAGGAG 60.322 60.000 0.00 0.00 41.22 3.69
1622 2505 0.768221 AGGAAAGCCACCAGACAGGA 60.768 55.000 0.00 0.00 42.07 3.86
1624 2507 0.689623 AGAGGAAAGCCACCAGACAG 59.310 55.000 0.00 0.00 36.29 3.51
1625 2508 1.140312 AAGAGGAAAGCCACCAGACA 58.860 50.000 0.00 0.00 36.29 3.41
1626 2509 1.072331 TCAAGAGGAAAGCCACCAGAC 59.928 52.381 0.00 0.00 36.29 3.51
1627 2510 1.072331 GTCAAGAGGAAAGCCACCAGA 59.928 52.381 0.00 0.00 36.29 3.86
1630 2513 0.955919 CGGTCAAGAGGAAAGCCACC 60.956 60.000 0.00 0.00 36.29 4.61
1631 2514 1.578206 GCGGTCAAGAGGAAAGCCAC 61.578 60.000 0.00 0.00 36.29 5.01
1632 2515 1.302511 GCGGTCAAGAGGAAAGCCA 60.303 57.895 0.00 0.00 36.29 4.75
1633 2516 1.301677 CTGCGGTCAAGAGGAAAGCC 61.302 60.000 0.00 0.00 31.46 4.35
1634 2517 0.603975 ACTGCGGTCAAGAGGAAAGC 60.604 55.000 0.00 0.00 0.00 3.51
1635 2518 1.532868 CAACTGCGGTCAAGAGGAAAG 59.467 52.381 0.00 0.00 0.00 2.62
1637 2520 0.250295 CCAACTGCGGTCAAGAGGAA 60.250 55.000 0.00 0.00 0.00 3.36
1638 2521 1.371183 CCAACTGCGGTCAAGAGGA 59.629 57.895 0.00 0.00 0.00 3.71
1640 2523 1.165907 TTGCCAACTGCGGTCAAGAG 61.166 55.000 0.00 0.00 45.60 2.85
1641 2524 1.153066 TTGCCAACTGCGGTCAAGA 60.153 52.632 0.00 0.00 45.60 3.02
1642 2525 1.008538 GTTGCCAACTGCGGTCAAG 60.009 57.895 0.00 0.00 45.60 3.02
1643 2526 1.034838 AAGTTGCCAACTGCGGTCAA 61.035 50.000 11.51 0.00 45.60 3.18
1644 2527 1.444119 GAAGTTGCCAACTGCGGTCA 61.444 55.000 11.51 0.00 45.60 4.02
1645 2528 1.282875 GAAGTTGCCAACTGCGGTC 59.717 57.895 11.51 0.79 45.60 4.79
1646 2529 3.432186 GAAGTTGCCAACTGCGGT 58.568 55.556 11.51 0.00 45.60 5.68
1649 2532 1.081840 GCTCGAAGTTGCCAACTGC 60.082 57.895 11.51 8.36 41.91 4.40
1650 2533 0.947244 AAGCTCGAAGTTGCCAACTG 59.053 50.000 11.51 0.00 41.91 3.16
1651 2534 1.230324 GAAGCTCGAAGTTGCCAACT 58.770 50.000 3.74 3.74 45.46 3.16
1653 2536 2.234613 CGAAGCTCGAAGTTGCCAA 58.765 52.632 0.00 0.00 43.74 4.52
1654 2537 3.951332 CGAAGCTCGAAGTTGCCA 58.049 55.556 0.00 0.00 43.74 4.92
1668 2551 1.691976 AGATCCCGTATTGATGGCGAA 59.308 47.619 0.00 0.00 0.00 4.70
1672 3235 3.988976 ATGGAGATCCCGTATTGATGG 57.011 47.619 0.00 0.00 37.93 3.51
1683 3246 6.656632 TGAGACATACAACTATGGAGATCC 57.343 41.667 0.00 0.00 34.96 3.36
1685 3248 8.173412 TCCTATGAGACATACAACTATGGAGAT 58.827 37.037 0.00 0.00 34.96 2.75
1693 3256 6.491714 AGCAATCCTATGAGACATACAACT 57.508 37.500 0.00 0.00 0.00 3.16
1752 3315 6.969043 AGAAATTCAACCCCTGACATGTATA 58.031 36.000 0.00 0.00 32.21 1.47
1760 3324 5.500234 CACTGATAGAAATTCAACCCCTGA 58.500 41.667 0.00 0.00 0.00 3.86
1763 3327 4.399303 CACCACTGATAGAAATTCAACCCC 59.601 45.833 0.00 0.00 0.00 4.95
1906 3756 0.106719 AAACCCGTGGCATGGATAGG 60.107 55.000 27.29 12.45 0.00 2.57
1922 3772 6.856426 CGAATTTCTTAGTCCCAAGTCAAAAC 59.144 38.462 0.00 0.00 0.00 2.43
1962 3812 3.444742 CAGGAAAGCTGGCATGTATGAAA 59.555 43.478 0.00 0.00 0.00 2.69
1963 3813 3.018856 CAGGAAAGCTGGCATGTATGAA 58.981 45.455 0.00 0.00 0.00 2.57
1973 3823 2.517959 TGGTCATTTCAGGAAAGCTGG 58.482 47.619 0.66 0.00 33.32 4.85
2014 3864 2.122189 GGGGAGAGATGGAGGGGG 60.122 72.222 0.00 0.00 0.00 5.40
2037 3888 3.809013 CAGGTCCGGGGAATGGGG 61.809 72.222 0.00 0.00 0.00 4.96
2048 3900 1.002011 GGGTTTGCTCCTCAGGTCC 60.002 63.158 0.00 0.00 0.00 4.46
2192 4052 2.579738 GGAGGAACCAGACCGCTC 59.420 66.667 0.00 0.00 38.79 5.03
2193 4053 3.382832 CGGAGGAACCAGACCGCT 61.383 66.667 0.00 0.00 38.98 5.52
2275 4349 2.686915 ACGAGCTACATGTAGGTGGTAC 59.313 50.000 36.20 23.65 45.91 3.34
2279 4353 1.560923 GCACGAGCTACATGTAGGTG 58.439 55.000 35.51 29.45 43.18 4.00
2284 4358 1.078759 GCTTCGCACGAGCTACATGT 61.079 55.000 2.69 2.69 39.10 3.21
2285 4359 1.078201 TGCTTCGCACGAGCTACATG 61.078 55.000 2.73 0.00 39.10 3.21
2286 4360 0.803768 CTGCTTCGCACGAGCTACAT 60.804 55.000 2.73 0.00 39.10 2.29
2287 4361 1.444383 CTGCTTCGCACGAGCTACA 60.444 57.895 2.73 0.00 39.10 2.74
2288 4362 2.161486 CCTGCTTCGCACGAGCTAC 61.161 63.158 2.73 0.00 39.10 3.58
2311 4385 7.660030 ACCATTATAAGTGCATAAAAGGCTT 57.340 32.000 0.00 0.00 0.00 4.35
2312 4386 7.417797 CCAACCATTATAAGTGCATAAAAGGCT 60.418 37.037 0.00 0.00 0.00 4.58
2313 4387 6.701400 CCAACCATTATAAGTGCATAAAAGGC 59.299 38.462 0.00 0.00 0.00 4.35
2314 4388 7.209475 CCCAACCATTATAAGTGCATAAAAGG 58.791 38.462 0.00 0.00 0.00 3.11
2315 4389 6.701400 GCCCAACCATTATAAGTGCATAAAAG 59.299 38.462 0.00 0.00 0.00 2.27
2377 4470 5.623673 CACCAAAAACAGCGTATTTCTACAC 59.376 40.000 0.00 0.00 0.00 2.90
2418 4511 6.737254 AACTGAATAACACCCTGATTAACG 57.263 37.500 0.00 0.00 0.00 3.18
2428 4521 7.499232 ACCTTCTGCATATAACTGAATAACACC 59.501 37.037 0.00 0.00 0.00 4.16
2445 4538 9.466497 AAGATTTTTGATAGATAACCTTCTGCA 57.534 29.630 0.00 0.00 0.00 4.41
2530 4631 6.784227 CGTTTTTACTGATTTATATCGGACGC 59.216 38.462 8.77 0.00 39.15 5.19
2564 4665 1.204146 ACATTCCTGCCCACTACGAT 58.796 50.000 0.00 0.00 0.00 3.73
2595 4696 1.405463 GGCAAGCTGGGTATGTAAAGC 59.595 52.381 0.00 0.00 35.86 3.51
2596 4697 2.722094 TGGCAAGCTGGGTATGTAAAG 58.278 47.619 0.00 0.00 0.00 1.85
2598 4699 3.380471 AATGGCAAGCTGGGTATGTAA 57.620 42.857 0.00 0.00 0.00 2.41
2599 4700 3.380471 AAATGGCAAGCTGGGTATGTA 57.620 42.857 0.00 0.00 0.00 2.29
2600 4701 2.234414 CAAAATGGCAAGCTGGGTATGT 59.766 45.455 0.00 0.00 0.00 2.29
2601 4702 2.496871 TCAAAATGGCAAGCTGGGTATG 59.503 45.455 0.00 0.00 0.00 2.39
2603 4704 2.170166 CTCAAAATGGCAAGCTGGGTA 58.830 47.619 0.00 0.00 0.00 3.69
2604 4705 0.971386 CTCAAAATGGCAAGCTGGGT 59.029 50.000 0.00 0.00 0.00 4.51
2605 4706 0.390735 GCTCAAAATGGCAAGCTGGG 60.391 55.000 0.95 0.00 0.00 4.45
2606 4707 0.606604 AGCTCAAAATGGCAAGCTGG 59.393 50.000 9.70 0.00 43.21 4.85
2607 4708 2.450609 AAGCTCAAAATGGCAAGCTG 57.549 45.000 11.12 0.00 44.03 4.24
2608 4709 3.321682 TGTAAAGCTCAAAATGGCAAGCT 59.678 39.130 4.83 4.83 46.66 3.74
2609 4710 3.429881 GTGTAAAGCTCAAAATGGCAAGC 59.570 43.478 0.00 0.00 34.95 4.01
2610 4711 4.445385 GTGTGTAAAGCTCAAAATGGCAAG 59.555 41.667 0.00 0.00 0.00 4.01
2611 4712 4.142071 TGTGTGTAAAGCTCAAAATGGCAA 60.142 37.500 0.00 0.00 0.00 4.52
2612 4713 3.382865 TGTGTGTAAAGCTCAAAATGGCA 59.617 39.130 0.00 0.00 0.00 4.92
2613 4714 3.976169 TGTGTGTAAAGCTCAAAATGGC 58.024 40.909 0.00 0.00 0.00 4.40
2614 4715 5.437289 TCTGTGTGTAAAGCTCAAAATGG 57.563 39.130 0.00 0.00 0.00 3.16
2615 4716 4.913924 GCTCTGTGTGTAAAGCTCAAAATG 59.086 41.667 0.00 0.00 0.00 2.32
2616 4717 4.823989 AGCTCTGTGTGTAAAGCTCAAAAT 59.176 37.500 0.00 0.00 41.05 1.82
2617 4718 4.199310 AGCTCTGTGTGTAAAGCTCAAAA 58.801 39.130 0.00 0.00 41.05 2.44
2621 4722 3.914312 TGTAGCTCTGTGTGTAAAGCTC 58.086 45.455 0.00 0.00 43.72 4.09
2631 4732 3.120060 GCAACATCCTTTGTAGCTCTGTG 60.120 47.826 0.00 0.00 37.68 3.66
2639 4740 7.081349 CGAAAACATTAGCAACATCCTTTGTA 58.919 34.615 0.00 0.00 37.68 2.41
2703 4805 7.049140 GCATTTAGCAGTGATGTTTAAAACC 57.951 36.000 0.00 0.00 44.79 3.27
2783 4885 8.969121 TGTTTCAGTTTGCATATATTTGTCAG 57.031 30.769 0.00 0.00 0.00 3.51
2822 4927 4.766891 ACACACTACCTCCAATCCAAAATG 59.233 41.667 0.00 0.00 0.00 2.32
2905 5014 7.201938 CGGAGTATACCCCAAAATAGTCACTAA 60.202 40.741 4.12 0.00 32.08 2.24
2919 5028 2.895404 TCTATGTTGCGGAGTATACCCC 59.105 50.000 0.00 0.00 0.00 4.95
2920 5029 4.495422 CATCTATGTTGCGGAGTATACCC 58.505 47.826 0.00 0.00 0.00 3.69
2960 5075 9.793259 AGGTTCAAATCTGAGTTAGACATAAAA 57.207 29.630 0.00 0.00 38.49 1.52
2964 5079 9.965902 ATTTAGGTTCAAATCTGAGTTAGACAT 57.034 29.630 0.00 0.00 38.49 3.06
2972 5087 9.007901 AGACAAGAATTTAGGTTCAAATCTGAG 57.992 33.333 0.00 0.00 31.69 3.35
3127 5242 4.841246 AGTCAAGAGTTTGATCCCACTACT 59.159 41.667 0.00 0.00 44.62 2.57
3179 5329 9.435688 CCATTTAGGAAAAATCCCTTAAAACTG 57.564 33.333 0.00 0.00 41.22 3.16
3224 5411 8.758633 ATGCCAAATACGACATATTAGTAGAC 57.241 34.615 0.00 0.00 32.86 2.59
3377 5565 4.904853 TGTACATACCAATCTATCTGGGCA 59.095 41.667 0.00 0.00 38.36 5.36
3448 5645 0.108138 GGATTAGCGTGACAGCACCT 60.108 55.000 2.68 0.00 42.09 4.00
3450 5647 1.002366 CAGGATTAGCGTGACAGCAC 58.998 55.000 2.68 0.00 41.67 4.40
3758 5970 3.922171 AGGATCAAGACTTAAGCCAGG 57.078 47.619 1.29 0.00 0.00 4.45
3759 5971 5.707298 TGAAAAGGATCAAGACTTAAGCCAG 59.293 40.000 1.29 0.00 0.00 4.85
3808 6020 6.649141 GCATACTACACCCGATTGATATCAAA 59.351 38.462 21.50 6.19 39.55 2.69
3961 6173 2.080336 CTGGAAAGGGGGTCTGGCAA 62.080 60.000 0.00 0.00 0.00 4.52
4066 6278 0.461870 CCACCTCCGCGATGAATGAA 60.462 55.000 8.23 0.00 0.00 2.57
4078 6290 0.680061 ACTTGAACGAGTCCACCTCC 59.320 55.000 0.00 0.00 36.82 4.30
4209 6421 1.153369 CAGGCATACTGTGACCCCG 60.153 63.158 0.00 0.00 42.42 5.73
5748 8000 1.146930 GCTCCCATCCTTCATCGCA 59.853 57.895 0.00 0.00 0.00 5.10
5818 8073 1.275291 CAGCTCGGTAACTTCTCCCAA 59.725 52.381 0.00 0.00 0.00 4.12
5982 8237 1.791555 CGAAGCATTAAAGGTGCAGCG 60.792 52.381 10.78 0.00 44.87 5.18
5983 8238 1.200020 ACGAAGCATTAAAGGTGCAGC 59.800 47.619 8.11 8.11 44.87 5.25
6045 8300 5.766174 GGGTGTCTCTATACCTACTTCAGAG 59.234 48.000 0.00 0.00 37.08 3.35
6078 8333 8.412456 TCGCATGGTGTAATAATCAATTGAAAT 58.588 29.630 13.09 6.54 0.00 2.17
6107 8366 2.599082 CTCGAACACTCTTCGCAATACC 59.401 50.000 0.00 0.00 41.30 2.73
6125 8384 2.650813 ATTAGAAGCGCCAGGCCTCG 62.651 60.000 0.00 5.72 45.17 4.63
6242 8513 6.379988 ACAAGGTCAAATATCCCATAACCAAC 59.620 38.462 0.00 0.00 0.00 3.77
6445 8757 3.031736 ACTACATATATAGGCCGGCCAG 58.968 50.000 45.13 31.19 38.92 4.85
6569 8906 1.144057 GGGTGTAGATGAGCCCACG 59.856 63.158 0.00 0.00 40.76 4.94
6570 8907 1.144057 CGGGTGTAGATGAGCCCAC 59.856 63.158 0.00 0.00 41.11 4.61
6622 8970 3.708563 ACTTGGACCACACAAAAATCG 57.291 42.857 0.00 0.00 0.00 3.34
6623 8971 3.555547 GCAACTTGGACCACACAAAAATC 59.444 43.478 0.00 0.00 0.00 2.17
6624 8972 3.197549 AGCAACTTGGACCACACAAAAAT 59.802 39.130 0.00 0.00 0.00 1.82
6637 8989 1.608055 TCACCACATGAGCAACTTGG 58.392 50.000 0.00 0.00 31.91 3.61
6642 8994 2.957680 ACAAACATCACCACATGAGCAA 59.042 40.909 0.00 0.00 41.91 3.91
6649 9001 7.065085 CCAAAAATTTGTACAAACATCACCACA 59.935 33.333 22.78 0.00 36.45 4.17
6661 9013 6.763610 GTCCAAACATCCCAAAAATTTGTACA 59.236 34.615 5.27 0.00 36.45 2.90
6664 9016 5.749462 TGTCCAAACATCCCAAAAATTTGT 58.251 33.333 5.27 0.00 36.45 2.83
6669 9021 4.410228 TGGAATGTCCAAACATCCCAAAAA 59.590 37.500 0.00 0.00 46.23 1.94
6709 9062 7.715265 ATATTGTTCACACTCGATATTGTCC 57.285 36.000 0.00 0.00 0.00 4.02
6782 9135 7.979537 GGTTAAGTTTGGACATTTGAGAAACTT 59.020 33.333 0.00 0.00 44.76 2.66
6787 9140 7.411486 TTTGGTTAAGTTTGGACATTTGAGA 57.589 32.000 0.00 0.00 0.00 3.27
6818 9171 3.198068 GCTCATATGTGTGATGTCCGTT 58.802 45.455 1.90 0.00 0.00 4.44
6911 9265 0.731417 TACCTAGCTCAACGCGTCTC 59.269 55.000 14.44 1.63 45.59 3.36
6916 9271 6.534079 TCTTATCTTTTTACCTAGCTCAACGC 59.466 38.462 0.00 0.00 39.57 4.84
6967 9322 3.855599 TCCCTCCCTTTCAAATGGTCATA 59.144 43.478 0.00 0.00 0.00 2.15
6968 9323 2.654385 TCCCTCCCTTTCAAATGGTCAT 59.346 45.455 0.00 0.00 0.00 3.06
6969 9324 2.041620 CTCCCTCCCTTTCAAATGGTCA 59.958 50.000 0.00 0.00 0.00 4.02
7002 9362 1.409427 GACACCTCCCCTCAGTAATCG 59.591 57.143 0.00 0.00 0.00 3.34
7020 9380 2.279918 AGGTGTTCGTGTGCGGAC 60.280 61.111 0.00 0.00 46.35 4.79
7021 9381 2.028484 GAGGTGTTCGTGTGCGGA 59.972 61.111 0.00 0.00 38.89 5.54
7022 9382 1.227999 AATGAGGTGTTCGTGTGCGG 61.228 55.000 0.00 0.00 38.89 5.69
7023 9383 0.110688 CAATGAGGTGTTCGTGTGCG 60.111 55.000 0.00 0.00 39.92 5.34
7024 9384 0.944386 ACAATGAGGTGTTCGTGTGC 59.056 50.000 0.00 0.00 0.00 4.57
7025 9385 2.668617 CACAATGAGGTGTTCGTGTG 57.331 50.000 0.00 0.00 37.80 3.82
7033 9393 1.548719 TCGAGGGTACACAATGAGGTG 59.451 52.381 0.00 0.00 44.35 4.00
7034 9394 1.549170 GTCGAGGGTACACAATGAGGT 59.451 52.381 0.00 0.00 0.00 3.85
7035 9395 1.548719 TGTCGAGGGTACACAATGAGG 59.451 52.381 0.00 0.00 0.00 3.86
7036 9396 2.607187 GTGTCGAGGGTACACAATGAG 58.393 52.381 0.00 0.00 45.26 2.90
7037 9397 2.736144 GTGTCGAGGGTACACAATGA 57.264 50.000 0.00 0.00 45.26 2.57
7042 9402 2.570181 CCGGTGTCGAGGGTACAC 59.430 66.667 0.00 0.00 45.21 2.90
7043 9403 2.677524 CCCGGTGTCGAGGGTACA 60.678 66.667 0.00 0.00 42.67 2.90
7044 9404 3.455469 CCCCGGTGTCGAGGGTAC 61.455 72.222 0.00 0.00 46.17 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.