Multiple sequence alignment - TraesCS4A01G390200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G390200 chr4A 100.000 3610 0 0 1 3610 667343888 667347497 0.000000e+00 6667.0
1 TraesCS4A01G390200 chr4A 86.355 1048 69 36 1738 2769 667175226 667174237 0.000000e+00 1075.0
2 TraesCS4A01G390200 chr4A 84.344 1022 90 37 86 1093 667317296 667318261 0.000000e+00 937.0
3 TraesCS4A01G390200 chr4A 85.379 725 73 20 373 1093 667176903 667176208 0.000000e+00 721.0
4 TraesCS4A01G390200 chr4A 79.779 994 89 56 1732 2682 667330557 667331481 1.420000e-173 619.0
5 TraesCS4A01G390200 chr4A 88.657 432 43 5 399 830 667224571 667224996 4.130000e-144 521.0
6 TraesCS4A01G390200 chr4A 99.262 271 2 0 823 1093 667225285 667225555 1.160000e-134 490.0
7 TraesCS4A01G390200 chr4A 85.901 383 42 7 714 1093 667167568 667167195 7.260000e-107 398.0
8 TraesCS4A01G390200 chr4A 83.908 435 47 11 3 427 667229408 667229829 9.390000e-106 394.0
9 TraesCS4A01G390200 chr4A 76.565 687 93 36 1281 1936 667191010 667190361 7.520000e-82 315.0
10 TraesCS4A01G390200 chr4A 86.243 189 20 5 86 271 667224059 667224244 2.200000e-47 200.0
11 TraesCS4A01G390200 chr4A 77.212 373 55 21 2263 2628 667104802 667104453 1.320000e-44 191.0
12 TraesCS4A01G390200 chr4A 77.485 342 51 16 1280 1608 667176148 667175820 7.960000e-42 182.0
13 TraesCS4A01G390200 chr4A 78.065 310 39 14 2118 2423 667062869 667063153 6.200000e-38 169.0
14 TraesCS4A01G390200 chr4A 85.333 150 15 5 1462 1609 667330301 667330445 8.080000e-32 148.0
15 TraesCS4A01G390200 chr4A 94.805 77 4 0 2138 2214 667105088 667105012 1.760000e-23 121.0
16 TraesCS4A01G390200 chr4A 97.297 37 0 1 3573 3609 667221772 667221807 1.080000e-05 62.1
17 TraesCS4A01G390200 chr7A 90.588 1105 69 11 20 1111 54994785 54995867 0.000000e+00 1432.0
18 TraesCS4A01G390200 chr7A 80.145 1516 124 74 1280 2758 54995876 54997251 0.000000e+00 968.0
19 TraesCS4A01G390200 chr7A 83.302 1054 86 43 52 1086 54964639 54963657 0.000000e+00 889.0
20 TraesCS4A01G390200 chr7A 87.119 722 61 13 373 1093 54989027 54989717 0.000000e+00 789.0
21 TraesCS4A01G390200 chr7A 84.238 774 48 29 1889 2645 54943676 54942960 0.000000e+00 686.0
22 TraesCS4A01G390200 chr7A 82.874 835 65 33 1873 2682 54990241 54991022 0.000000e+00 678.0
23 TraesCS4A01G390200 chr7A 84.854 515 46 14 580 1093 54944506 54944023 1.160000e-134 490.0
24 TraesCS4A01G390200 chr7A 81.600 500 43 17 1737 2214 54979754 54979282 5.690000e-98 368.0
25 TraesCS4A01G390200 chr7A 87.925 265 17 7 1973 2232 54962370 54962116 7.580000e-77 298.0
26 TraesCS4A01G390200 chr7A 84.950 299 25 10 55 335 54945208 54944912 5.900000e-73 285.0
27 TraesCS4A01G390200 chr7A 91.018 167 14 1 1117 1282 440649218 440649384 1.300000e-54 224.0
28 TraesCS4A01G390200 chr7A 81.526 249 21 12 1361 1609 54963307 54963084 7.960000e-42 182.0
29 TraesCS4A01G390200 chr7A 86.275 153 18 2 202 353 54988558 54988708 2.880000e-36 163.0
30 TraesCS4A01G390200 chr7A 86.232 138 15 3 1786 1923 54962913 54962780 2.900000e-31 147.0
31 TraesCS4A01G390200 chr7A 85.135 148 10 5 1397 1544 54982700 54982565 1.350000e-29 141.0
32 TraesCS4A01G390200 chr7A 76.163 344 35 20 1280 1609 54989777 54990087 1.750000e-28 137.0
33 TraesCS4A01G390200 chr7A 81.333 150 21 6 2805 2951 54997343 54997488 8.190000e-22 115.0
34 TraesCS4A01G390200 chr7A 85.859 99 12 1 1448 1546 54924608 54924704 1.770000e-18 104.0
35 TraesCS4A01G390200 chr7A 77.419 186 22 13 1280 1451 54943963 54943784 3.840000e-15 93.5
36 TraesCS4A01G390200 chr7A 91.489 47 0 4 3539 3582 54978535 54978490 1.080000e-05 62.1
37 TraesCS4A01G390200 chr7D 86.276 1144 74 36 1 1120 53270877 53269793 0.000000e+00 1166.0
38 TraesCS4A01G390200 chr7D 84.260 1061 95 47 1737 2768 53269173 53268156 0.000000e+00 968.0
39 TraesCS4A01G390200 chr7D 77.145 1387 166 79 1352 2682 53275888 53274597 0.000000e+00 665.0
40 TraesCS4A01G390200 chr7D 87.231 603 49 24 2954 3542 266451722 266451134 0.000000e+00 662.0
41 TraesCS4A01G390200 chr7D 87.955 440 41 9 189 621 53276756 53276322 3.220000e-140 508.0
42 TraesCS4A01G390200 chr7D 76.266 1007 131 52 1280 2221 52525324 52526287 1.540000e-118 436.0
43 TraesCS4A01G390200 chr7D 85.577 416 46 10 373 788 52609755 52610156 1.200000e-114 424.0
44 TraesCS4A01G390200 chr7D 86.262 313 28 6 781 1093 53276304 53276007 3.480000e-85 326.0
45 TraesCS4A01G390200 chr7D 77.465 568 79 29 1397 1942 53330898 53330358 9.800000e-76 294.0
46 TraesCS4A01G390200 chr7D 86.364 286 18 7 832 1111 52663029 52663299 3.530000e-75 292.0
47 TraesCS4A01G390200 chr7D 84.047 257 11 11 1282 1538 53269791 53269565 1.690000e-53 220.0
48 TraesCS4A01G390200 chr7D 87.654 162 15 3 937 1093 52525137 52525298 2.210000e-42 183.0
49 TraesCS4A01G390200 chr7D 86.957 161 14 2 2801 2957 53268082 53267925 1.330000e-39 174.0
50 TraesCS4A01G390200 chr7D 93.204 103 7 0 2112 2214 52513772 52513874 6.240000e-33 152.0
51 TraesCS4A01G390200 chr7D 96.552 87 3 0 1523 1609 53269551 53269465 1.040000e-30 145.0
52 TraesCS4A01G390200 chr7D 96.250 80 3 0 2114 2193 52663926 52664005 8.130000e-27 132.0
53 TraesCS4A01G390200 chr7D 97.222 72 0 2 3539 3610 53267938 53267869 1.760000e-23 121.0
54 TraesCS4A01G390200 chr7D 83.099 71 5 4 3539 3609 53323304 53323241 1.400000e-04 58.4
55 TraesCS4A01G390200 chr4B 98.812 589 6 1 2955 3542 546638817 546639405 0.000000e+00 1048.0
56 TraesCS4A01G390200 chr4B 94.020 602 18 4 2958 3542 194789172 194788572 0.000000e+00 896.0
57 TraesCS4A01G390200 chr4B 90.116 172 16 1 1111 1281 659784375 659784204 4.690000e-54 222.0
58 TraesCS4A01G390200 chr4B 90.000 170 16 1 1113 1281 483266371 483266540 6.070000e-53 219.0
59 TraesCS4A01G390200 chr2B 98.644 590 7 1 2954 3542 456054361 456054950 0.000000e+00 1044.0
60 TraesCS4A01G390200 chr2B 98.477 591 7 2 2954 3542 364788205 364787615 0.000000e+00 1040.0
61 TraesCS4A01G390200 chr2B 98.472 589 8 1 2955 3542 456053499 456054087 0.000000e+00 1037.0
62 TraesCS4A01G390200 chr2B 92.073 164 13 0 1117 1280 124626272 124626435 7.800000e-57 231.0
63 TraesCS4A01G390200 chr2B 89.326 178 18 1 1112 1288 255572387 255572210 4.690000e-54 222.0
64 TraesCS4A01G390200 chr7B 94.868 604 18 4 2955 3546 4329340 4329942 0.000000e+00 931.0
65 TraesCS4A01G390200 chr7B 94.527 603 18 5 2954 3542 612189544 612190145 0.000000e+00 917.0
66 TraesCS4A01G390200 chr1B 94.754 610 12 3 2955 3544 533182072 533182681 0.000000e+00 931.0
67 TraesCS4A01G390200 chr5B 94.676 601 16 5 2958 3544 520856334 520855736 0.000000e+00 918.0
68 TraesCS4A01G390200 chr5B 94.500 600 18 6 2958 3543 570515566 570514968 0.000000e+00 911.0
69 TraesCS4A01G390200 chr6B 94.527 603 17 9 2955 3543 470866985 470867585 0.000000e+00 917.0
70 TraesCS4A01G390200 chrUn 78.694 582 100 22 2973 3543 21939020 21938452 2.050000e-97 366.0
71 TraesCS4A01G390200 chr5D 90.643 171 15 1 1113 1282 539915844 539916014 3.630000e-55 226.0
72 TraesCS4A01G390200 chr5D 89.535 172 17 1 1110 1281 517855001 517855171 2.180000e-52 217.0
73 TraesCS4A01G390200 chr2A 90.476 168 16 0 1116 1283 460903999 460904166 4.690000e-54 222.0
74 TraesCS4A01G390200 chr2D 89.143 175 18 1 1109 1283 517572462 517572635 2.180000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G390200 chr4A 667343888 667347497 3609 False 6667.000000 6667 100.000000 1 3610 1 chr4A.!!$F3 3609
1 TraesCS4A01G390200 chr4A 667317296 667318261 965 False 937.000000 937 84.344000 86 1093 1 chr4A.!!$F2 1007
2 TraesCS4A01G390200 chr4A 667174237 667176903 2666 True 659.333333 1075 83.073000 373 2769 3 chr4A.!!$R4 2396
3 TraesCS4A01G390200 chr4A 667330301 667331481 1180 False 383.500000 619 82.556000 1462 2682 2 chr4A.!!$F5 1220
4 TraesCS4A01G390200 chr4A 667221772 667229829 8057 False 333.420000 521 91.073400 3 3609 5 chr4A.!!$F4 3606
5 TraesCS4A01G390200 chr4A 667190361 667191010 649 True 315.000000 315 76.565000 1281 1936 1 chr4A.!!$R2 655
6 TraesCS4A01G390200 chr7A 54988558 54997488 8930 False 611.714286 1432 83.499571 20 2951 7 chr7A.!!$F3 2931
7 TraesCS4A01G390200 chr7A 54942960 54945208 2248 True 388.625000 686 82.865250 55 2645 4 chr7A.!!$R1 2590
8 TraesCS4A01G390200 chr7A 54962116 54964639 2523 True 379.000000 889 84.746250 52 2232 4 chr7A.!!$R2 2180
9 TraesCS4A01G390200 chr7D 266451134 266451722 588 True 662.000000 662 87.231000 2954 3542 1 chr7D.!!$R3 588
10 TraesCS4A01G390200 chr7D 53267869 53276756 8887 True 477.000000 1166 87.408444 1 3610 9 chr7D.!!$R4 3609
11 TraesCS4A01G390200 chr7D 52525137 52526287 1150 False 309.500000 436 81.960000 937 2221 2 chr7D.!!$F3 1284
12 TraesCS4A01G390200 chr7D 53330358 53330898 540 True 294.000000 294 77.465000 1397 1942 1 chr7D.!!$R2 545
13 TraesCS4A01G390200 chr7D 52663029 52664005 976 False 212.000000 292 91.307000 832 2193 2 chr7D.!!$F4 1361
14 TraesCS4A01G390200 chr4B 546638817 546639405 588 False 1048.000000 1048 98.812000 2955 3542 1 chr4B.!!$F2 587
15 TraesCS4A01G390200 chr4B 194788572 194789172 600 True 896.000000 896 94.020000 2958 3542 1 chr4B.!!$R1 584
16 TraesCS4A01G390200 chr2B 456053499 456054950 1451 False 1040.500000 1044 98.558000 2954 3542 2 chr2B.!!$F2 588
17 TraesCS4A01G390200 chr2B 364787615 364788205 590 True 1040.000000 1040 98.477000 2954 3542 1 chr2B.!!$R2 588
18 TraesCS4A01G390200 chr7B 4329340 4329942 602 False 931.000000 931 94.868000 2955 3546 1 chr7B.!!$F1 591
19 TraesCS4A01G390200 chr7B 612189544 612190145 601 False 917.000000 917 94.527000 2954 3542 1 chr7B.!!$F2 588
20 TraesCS4A01G390200 chr1B 533182072 533182681 609 False 931.000000 931 94.754000 2955 3544 1 chr1B.!!$F1 589
21 TraesCS4A01G390200 chr5B 520855736 520856334 598 True 918.000000 918 94.676000 2958 3544 1 chr5B.!!$R1 586
22 TraesCS4A01G390200 chr5B 570514968 570515566 598 True 911.000000 911 94.500000 2958 3543 1 chr5B.!!$R2 585
23 TraesCS4A01G390200 chr6B 470866985 470867585 600 False 917.000000 917 94.527000 2955 3543 1 chr6B.!!$F1 588
24 TraesCS4A01G390200 chrUn 21938452 21939020 568 True 366.000000 366 78.694000 2973 3543 1 chrUn.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 2232 0.179234 TCTCTTGTGGCCGTTGTCAA 59.821 50.0 0.00 0.00 0.00 3.18 F
1355 4450 0.667453 GTGAGGCCGTAGTACTAGCC 59.333 60.0 20.45 20.45 46.13 3.93 F
1702 4846 0.251386 TCCATTTACTGCCCCGCAAA 60.251 50.0 0.00 0.00 38.41 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 4548 0.034574 ATGGGTGTGTGTGTGTGTGT 60.035 50.0 0.0 0.0 0.00 3.72 R
2353 14889 0.103755 CAGATGGCAGAAGAGCGCTA 59.896 55.0 11.5 0.0 34.64 4.26 R
3082 15734 1.477553 GTACCCATGTACCCTGTCGA 58.522 55.0 0.0 0.0 41.27 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 2232 0.179234 TCTCTTGTGGCCGTTGTCAA 59.821 50.000 0.00 0.00 0.00 3.18
24 2234 0.179234 TCTTGTGGCCGTTGTCAAGA 59.821 50.000 16.99 16.99 42.21 3.02
25 2235 1.021202 CTTGTGGCCGTTGTCAAGAA 58.979 50.000 14.70 0.00 39.39 2.52
37 2247 5.298794 GTTGTCAAGAACGAGCGATATAC 57.701 43.478 0.00 0.00 0.00 1.47
38 2248 4.895224 TGTCAAGAACGAGCGATATACT 57.105 40.909 0.00 0.00 0.00 2.12
39 2249 5.244785 TGTCAAGAACGAGCGATATACTT 57.755 39.130 0.00 0.00 0.00 2.24
40 2250 5.647589 TGTCAAGAACGAGCGATATACTTT 58.352 37.500 0.00 0.00 0.00 2.66
41 2251 5.742453 TGTCAAGAACGAGCGATATACTTTC 59.258 40.000 0.00 0.00 0.00 2.62
42 2252 5.742453 GTCAAGAACGAGCGATATACTTTCA 59.258 40.000 0.00 0.00 0.00 2.69
43 2253 6.418226 GTCAAGAACGAGCGATATACTTTCAT 59.582 38.462 0.00 0.00 0.00 2.57
44 2254 7.590322 GTCAAGAACGAGCGATATACTTTCATA 59.410 37.037 0.00 0.00 0.00 2.15
45 2255 7.803659 TCAAGAACGAGCGATATACTTTCATAG 59.196 37.037 0.00 0.00 0.00 2.23
46 2256 7.204496 AGAACGAGCGATATACTTTCATAGT 57.796 36.000 0.00 0.00 41.04 2.12
47 2257 7.299586 AGAACGAGCGATATACTTTCATAGTC 58.700 38.462 0.00 0.00 38.33 2.59
48 2258 6.555812 ACGAGCGATATACTTTCATAGTCA 57.444 37.500 0.00 0.00 38.33 3.41
49 2259 6.372185 ACGAGCGATATACTTTCATAGTCAC 58.628 40.000 0.00 0.00 38.33 3.67
50 2260 6.205076 ACGAGCGATATACTTTCATAGTCACT 59.795 38.462 0.00 0.00 38.33 3.41
86 2296 6.885918 TGATCACTTCTCCTTGCAAATGAATA 59.114 34.615 0.00 0.00 0.00 1.75
87 2297 7.394077 TGATCACTTCTCCTTGCAAATGAATAA 59.606 33.333 0.00 0.00 0.00 1.40
89 2299 6.942005 TCACTTCTCCTTGCAAATGAATAAGA 59.058 34.615 18.06 10.80 0.00 2.10
90 2300 7.025963 CACTTCTCCTTGCAAATGAATAAGAC 58.974 38.462 18.06 0.00 0.00 3.01
91 2301 6.944862 ACTTCTCCTTGCAAATGAATAAGACT 59.055 34.615 18.06 4.23 0.00 3.24
92 2302 8.103305 ACTTCTCCTTGCAAATGAATAAGACTA 58.897 33.333 18.06 0.00 0.00 2.59
93 2303 7.849804 TCTCCTTGCAAATGAATAAGACTAC 57.150 36.000 0.00 0.00 0.00 2.73
94 2304 6.823689 TCTCCTTGCAAATGAATAAGACTACC 59.176 38.462 0.00 0.00 0.00 3.18
115 2337 2.493278 CGGAGGCCAGATGAAACAAATT 59.507 45.455 5.01 0.00 0.00 1.82
171 2393 4.375272 TCCTTCTAGAATACGACGTCGAT 58.625 43.478 41.52 26.60 43.02 3.59
193 2415 6.238566 CGATTAGTCGGTAAATCAGTGACCTA 60.239 42.308 0.00 0.00 44.00 3.08
262 2489 2.191128 AAGAGGCATCCACTTGTCAC 57.809 50.000 0.00 0.00 33.43 3.67
273 2508 2.039746 CCACTTGTCACCCATTCTGGTA 59.960 50.000 0.00 0.00 36.67 3.25
276 2511 3.244561 ACTTGTCACCCATTCTGGTACTG 60.245 47.826 0.00 0.00 36.67 2.74
321 2562 4.342665 GGTACACTCCTTAGCTGCTAAGAT 59.657 45.833 38.02 24.82 44.24 2.40
416 3121 4.499696 GGACTTTTGACAGTCAAACATGGG 60.500 45.833 25.46 15.71 45.03 4.00
417 3122 3.181476 ACTTTTGACAGTCAAACATGGGC 60.181 43.478 25.46 0.00 45.03 5.36
418 3123 2.064434 TTGACAGTCAAACATGGGCA 57.936 45.000 13.90 0.00 32.71 5.36
423 3130 2.158682 ACAGTCAAACATGGGCACTGTA 60.159 45.455 16.10 0.00 44.60 2.74
441 3148 6.223852 CACTGTAGTAACTCAACTCAATGGT 58.776 40.000 0.00 0.00 0.00 3.55
480 3187 8.517062 AGATGACAATTTAGAAATCTTCAGGG 57.483 34.615 0.00 0.00 0.00 4.45
615 3331 0.967380 GTTGGACATCCCTTGCCCTG 60.967 60.000 0.00 0.00 35.38 4.45
665 3383 4.981812 ACGTCTTATTTTGGACCCTTTCT 58.018 39.130 0.00 0.00 0.00 2.52
710 3429 4.741321 ATCAATTCAATGGGAAACGCAT 57.259 36.364 0.00 0.00 39.39 4.73
725 3444 2.100197 ACGCATTAGGTAGCTGACAGA 58.900 47.619 6.65 0.00 0.00 3.41
1086 4134 4.148825 AAGGGCTGCCTCTACGCG 62.149 66.667 19.68 3.53 0.00 6.01
1111 4193 5.484998 TGGTAAGATATGATCTGCAGCCATA 59.515 40.000 22.25 22.25 40.13 2.74
1114 4196 7.012138 GGTAAGATATGATCTGCAGCCATAATG 59.988 40.741 23.19 0.00 40.13 1.90
1119 4201 9.722184 GATATGATCTGCAGCCATAATGTATAT 57.278 33.333 23.19 12.24 0.00 0.86
1121 4203 8.899427 ATGATCTGCAGCCATAATGTATATAC 57.101 34.615 9.47 5.89 0.00 1.47
1122 4204 8.082672 TGATCTGCAGCCATAATGTATATACT 57.917 34.615 9.47 0.00 0.00 2.12
1123 4205 8.200120 TGATCTGCAGCCATAATGTATATACTC 58.800 37.037 9.47 0.00 0.00 2.59
1124 4206 6.878317 TCTGCAGCCATAATGTATATACTCC 58.122 40.000 9.47 0.00 0.00 3.85
1126 4208 5.726308 TGCAGCCATAATGTATATACTCCCT 59.274 40.000 13.89 0.00 0.00 4.20
1127 4209 6.127054 TGCAGCCATAATGTATATACTCCCTC 60.127 42.308 13.89 0.00 0.00 4.30
1128 4210 6.686632 GCAGCCATAATGTATATACTCCCTCC 60.687 46.154 13.89 0.00 0.00 4.30
1130 4212 5.363005 GCCATAATGTATATACTCCCTCCGT 59.637 44.000 13.89 0.00 0.00 4.69
1131 4213 6.127140 GCCATAATGTATATACTCCCTCCGTT 60.127 42.308 13.89 0.00 0.00 4.44
1132 4214 7.580882 GCCATAATGTATATACTCCCTCCGTTT 60.581 40.741 13.89 0.00 0.00 3.60
1133 4215 8.319146 CCATAATGTATATACTCCCTCCGTTTT 58.681 37.037 13.89 0.00 0.00 2.43
1134 4216 9.720769 CATAATGTATATACTCCCTCCGTTTTT 57.279 33.333 13.89 0.00 0.00 1.94
1145 4227 8.728337 ACTCCCTCCGTTTTTAAATATAAGTC 57.272 34.615 0.00 0.00 0.00 3.01
1146 4228 8.546322 ACTCCCTCCGTTTTTAAATATAAGTCT 58.454 33.333 0.00 0.00 0.00 3.24
1147 4229 9.392259 CTCCCTCCGTTTTTAAATATAAGTCTT 57.608 33.333 0.00 0.00 0.00 3.01
1148 4230 9.743581 TCCCTCCGTTTTTAAATATAAGTCTTT 57.256 29.630 0.00 0.00 0.00 2.52
1149 4231 9.783256 CCCTCCGTTTTTAAATATAAGTCTTTG 57.217 33.333 0.00 0.00 0.00 2.77
1150 4232 9.285770 CCTCCGTTTTTAAATATAAGTCTTTGC 57.714 33.333 0.00 0.00 0.00 3.68
1151 4233 9.834628 CTCCGTTTTTAAATATAAGTCTTTGCA 57.165 29.630 0.00 0.00 0.00 4.08
1166 4248 8.767478 AAGTCTTTGCAAAGATTTCATTATGG 57.233 30.769 37.03 11.75 45.83 2.74
1167 4249 8.125978 AGTCTTTGCAAAGATTTCATTATGGA 57.874 30.769 37.03 13.77 45.83 3.41
1168 4250 8.031277 AGTCTTTGCAAAGATTTCATTATGGAC 58.969 33.333 37.03 22.72 45.83 4.02
1169 4251 8.031277 GTCTTTGCAAAGATTTCATTATGGACT 58.969 33.333 37.03 0.00 45.83 3.85
1170 4252 9.241919 TCTTTGCAAAGATTTCATTATGGACTA 57.758 29.630 32.86 9.15 39.95 2.59
1171 4253 9.294030 CTTTGCAAAGATTTCATTATGGACTAC 57.706 33.333 31.24 0.00 38.28 2.73
1172 4254 7.936496 TGCAAAGATTTCATTATGGACTACA 57.064 32.000 0.00 0.00 0.00 2.74
1173 4255 8.523915 TGCAAAGATTTCATTATGGACTACAT 57.476 30.769 0.00 0.00 43.68 2.29
1174 4256 9.625747 TGCAAAGATTTCATTATGGACTACATA 57.374 29.630 0.00 0.00 41.03 2.29
1175 4257 9.884465 GCAAAGATTTCATTATGGACTACATAC 57.116 33.333 0.00 0.00 41.61 2.39
1177 4259 8.833231 AAGATTTCATTATGGACTACATACGG 57.167 34.615 0.00 0.00 41.61 4.02
1178 4260 8.190326 AGATTTCATTATGGACTACATACGGA 57.810 34.615 0.00 0.00 41.61 4.69
1179 4261 8.307483 AGATTTCATTATGGACTACATACGGAG 58.693 37.037 0.00 0.00 41.61 4.63
1199 4281 8.699283 ACGGAGTAAAATAAGTGAATCTACAC 57.301 34.615 0.00 0.00 41.94 2.90
1200 4282 8.529476 ACGGAGTAAAATAAGTGAATCTACACT 58.471 33.333 0.00 0.00 46.76 3.55
1212 4294 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
1213 4295 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
1214 4296 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
1224 4306 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
1225 4307 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
1230 4312 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1231 4313 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1232 4314 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1233 4315 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
1234 4316 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
1235 4317 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
1236 4318 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
1237 4319 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
1238 4320 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
1239 4321 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
1240 4322 4.476297 ACATCCGTATGTGGTCCATAGTA 58.524 43.478 0.00 0.00 44.79 1.82
1241 4323 4.897076 ACATCCGTATGTGGTCCATAGTAA 59.103 41.667 0.00 0.00 44.79 2.24
1242 4324 5.364446 ACATCCGTATGTGGTCCATAGTAAA 59.636 40.000 0.00 0.00 44.79 2.01
1243 4325 5.936187 TCCGTATGTGGTCCATAGTAAAA 57.064 39.130 0.00 0.00 36.71 1.52
1244 4326 6.488769 TCCGTATGTGGTCCATAGTAAAAT 57.511 37.500 0.00 0.00 36.71 1.82
1245 4327 6.518493 TCCGTATGTGGTCCATAGTAAAATC 58.482 40.000 0.00 0.00 36.71 2.17
1246 4328 6.325545 TCCGTATGTGGTCCATAGTAAAATCT 59.674 38.462 0.00 0.00 36.71 2.40
1247 4329 6.990349 CCGTATGTGGTCCATAGTAAAATCTT 59.010 38.462 0.00 0.00 36.71 2.40
1248 4330 7.497909 CCGTATGTGGTCCATAGTAAAATCTTT 59.502 37.037 0.00 0.00 36.71 2.52
1249 4331 9.537192 CGTATGTGGTCCATAGTAAAATCTTTA 57.463 33.333 0.00 0.00 36.71 1.85
1276 4358 8.535690 AAAGACTTGTATTTAGAAACGGAGAG 57.464 34.615 0.00 0.00 0.00 3.20
1277 4359 7.463961 AGACTTGTATTTAGAAACGGAGAGA 57.536 36.000 0.00 0.00 0.00 3.10
1278 4360 7.540299 AGACTTGTATTTAGAAACGGAGAGAG 58.460 38.462 0.00 0.00 0.00 3.20
1279 4361 7.177041 AGACTTGTATTTAGAAACGGAGAGAGT 59.823 37.037 0.00 0.00 0.00 3.24
1280 4362 8.345724 ACTTGTATTTAGAAACGGAGAGAGTA 57.654 34.615 0.00 0.00 0.00 2.59
1281 4363 8.460428 ACTTGTATTTAGAAACGGAGAGAGTAG 58.540 37.037 0.00 0.00 0.00 2.57
1282 4364 8.571461 TTGTATTTAGAAACGGAGAGAGTAGA 57.429 34.615 0.00 0.00 0.00 2.59
1283 4365 8.571461 TGTATTTAGAAACGGAGAGAGTAGAA 57.429 34.615 0.00 0.00 0.00 2.10
1284 4366 8.457261 TGTATTTAGAAACGGAGAGAGTAGAAC 58.543 37.037 0.00 0.00 0.00 3.01
1285 4367 5.893897 TTAGAAACGGAGAGAGTAGAACC 57.106 43.478 0.00 0.00 0.00 3.62
1350 4445 1.132643 CAGACAGTGAGGCCGTAGTAC 59.867 57.143 0.00 0.00 0.00 2.73
1351 4446 1.004511 AGACAGTGAGGCCGTAGTACT 59.995 52.381 0.00 0.00 0.00 2.73
1352 4447 2.238144 AGACAGTGAGGCCGTAGTACTA 59.762 50.000 0.00 0.00 0.00 1.82
1355 4450 0.667453 GTGAGGCCGTAGTACTAGCC 59.333 60.000 20.45 20.45 46.13 3.93
1385 4481 6.364701 TGCAGGCTGATTAATAATTAGTGGT 58.635 36.000 20.86 0.00 0.00 4.16
1395 4491 0.981183 AATTAGTGGTGACCGAGGCA 59.019 50.000 0.00 0.00 0.00 4.75
1402 4498 1.212751 GTGACCGAGGCAAATTGGC 59.787 57.895 11.87 11.87 44.10 4.52
1423 4531 2.041081 CCTTGTTCCTTCCCACCATACA 59.959 50.000 0.00 0.00 0.00 2.29
1424 4532 3.309121 CCTTGTTCCTTCCCACCATACAT 60.309 47.826 0.00 0.00 0.00 2.29
1429 4537 2.432874 TCCTTCCCACCATACATACACG 59.567 50.000 0.00 0.00 0.00 4.49
1430 4538 2.210116 CTTCCCACCATACATACACGC 58.790 52.381 0.00 0.00 0.00 5.34
1431 4539 1.196012 TCCCACCATACATACACGCA 58.804 50.000 0.00 0.00 0.00 5.24
1432 4540 1.134640 TCCCACCATACATACACGCAC 60.135 52.381 0.00 0.00 0.00 5.34
1434 4542 0.927537 CACCATACATACACGCACGG 59.072 55.000 0.00 0.00 0.00 4.94
1435 4543 0.808453 ACCATACATACACGCACGGC 60.808 55.000 0.00 0.00 0.00 5.68
1436 4544 0.808060 CCATACATACACGCACGGCA 60.808 55.000 0.00 0.00 0.00 5.69
1437 4545 1.217001 CATACATACACGCACGGCAT 58.783 50.000 0.00 0.00 0.00 4.40
1438 4546 1.070643 CATACATACACGCACGGCATG 60.071 52.381 0.00 0.00 0.00 4.06
1474 4606 1.532316 CCATCATGGTCATGGGCCC 60.532 63.158 17.59 17.59 37.71 5.80
1475 4607 1.900016 CATCATGGTCATGGGCCCG 60.900 63.158 19.37 3.22 39.24 6.13
1476 4608 2.386100 ATCATGGTCATGGGCCCGT 61.386 57.895 19.37 15.91 39.24 5.28
1477 4609 2.629424 ATCATGGTCATGGGCCCGTG 62.629 60.000 34.89 34.89 39.24 4.94
1478 4610 3.014538 ATGGTCATGGGCCCGTGA 61.015 61.111 38.16 38.16 39.38 4.35
1482 4614 3.399181 TCATGGGCCCGTGACCTC 61.399 66.667 38.16 3.21 37.08 3.85
1483 4615 3.716195 CATGGGCCCGTGACCTCA 61.716 66.667 36.99 7.52 35.09 3.86
1484 4616 2.692368 ATGGGCCCGTGACCTCAT 60.692 61.111 18.28 0.00 0.00 2.90
1485 4617 1.383943 ATGGGCCCGTGACCTCATA 60.384 57.895 18.28 0.00 0.00 2.15
1486 4618 1.410850 ATGGGCCCGTGACCTCATAG 61.411 60.000 18.28 0.00 0.00 2.23
1487 4619 2.064581 GGGCCCGTGACCTCATAGT 61.065 63.158 5.69 0.00 0.00 2.12
1488 4620 1.442148 GGCCCGTGACCTCATAGTC 59.558 63.158 0.00 0.00 37.28 2.59
1489 4621 1.442148 GCCCGTGACCTCATAGTCC 59.558 63.158 0.00 0.00 35.83 3.85
1490 4622 1.327690 GCCCGTGACCTCATAGTCCA 61.328 60.000 0.00 0.00 35.83 4.02
1491 4623 0.747255 CCCGTGACCTCATAGTCCAG 59.253 60.000 0.00 0.00 35.83 3.86
1510 4642 3.071602 CCAGATCGATAGGTGGTGGATTT 59.928 47.826 0.00 0.00 0.00 2.17
1515 4647 5.223449 TCGATAGGTGGTGGATTTATTCC 57.777 43.478 0.00 0.00 45.69 3.01
1536 4668 1.484444 GCCCCTCAGAACTGACCACT 61.484 60.000 0.00 0.00 35.46 4.00
1539 4671 1.001406 CCCTCAGAACTGACCACTCAC 59.999 57.143 0.00 0.00 35.46 3.51
1549 4681 2.685897 CTGACCACTCACCTAGACTAGC 59.314 54.545 3.76 0.00 0.00 3.42
1550 4682 2.309162 TGACCACTCACCTAGACTAGCT 59.691 50.000 3.76 0.00 0.00 3.32
1551 4683 3.522343 TGACCACTCACCTAGACTAGCTA 59.478 47.826 3.76 0.00 0.00 3.32
1552 4684 4.131596 GACCACTCACCTAGACTAGCTAG 58.868 52.174 19.44 19.44 45.12 3.42
1566 4698 5.133660 AGACTAGCTAGGAATCCTCTCTTCA 59.866 44.000 24.35 0.00 34.61 3.02
1599 4732 5.362556 AAGTCAGGATTCACAATCAAACG 57.637 39.130 0.00 0.00 39.71 3.60
1609 4742 4.641396 TCACAATCAAACGACCAAGAGAT 58.359 39.130 0.00 0.00 0.00 2.75
1611 4744 5.869344 TCACAATCAAACGACCAAGAGATAG 59.131 40.000 0.00 0.00 0.00 2.08
1615 4759 1.867363 AACGACCAAGAGATAGGCCT 58.133 50.000 11.78 11.78 0.00 5.19
1622 4766 0.261991 AAGAGATAGGCCTGGTCCGA 59.738 55.000 17.99 0.00 0.00 4.55
1644 4788 1.173043 TGGCGCGAAATGGAGAAAAT 58.827 45.000 12.10 0.00 0.00 1.82
1645 4789 1.543802 TGGCGCGAAATGGAGAAAATT 59.456 42.857 12.10 0.00 0.00 1.82
1646 4790 2.750166 TGGCGCGAAATGGAGAAAATTA 59.250 40.909 12.10 0.00 0.00 1.40
1647 4791 3.191581 TGGCGCGAAATGGAGAAAATTAA 59.808 39.130 12.10 0.00 0.00 1.40
1648 4792 4.170256 GGCGCGAAATGGAGAAAATTAAA 58.830 39.130 12.10 0.00 0.00 1.52
1653 4797 6.183359 CGCGAAATGGAGAAAATTAAACAAGG 60.183 38.462 0.00 0.00 0.00 3.61
1658 4802 7.839680 ATGGAGAAAATTAAACAAGGACAGT 57.160 32.000 0.00 0.00 0.00 3.55
1666 4810 6.635030 ATTAAACAAGGACAGTCCAAGTTC 57.365 37.500 22.31 0.00 39.61 3.01
1679 4823 4.846940 AGTCCAAGTTCAACCCTCTCTATT 59.153 41.667 0.00 0.00 0.00 1.73
1681 4825 5.644206 GTCCAAGTTCAACCCTCTCTATTTC 59.356 44.000 0.00 0.00 0.00 2.17
1684 4828 6.372937 CCAAGTTCAACCCTCTCTATTTCTTC 59.627 42.308 0.00 0.00 0.00 2.87
1692 4836 7.757242 ACCCTCTCTATTTCTTCCATTTACT 57.243 36.000 0.00 0.00 0.00 2.24
1693 4837 7.569240 ACCCTCTCTATTTCTTCCATTTACTG 58.431 38.462 0.00 0.00 0.00 2.74
1694 4838 6.484977 CCCTCTCTATTTCTTCCATTTACTGC 59.515 42.308 0.00 0.00 0.00 4.40
1695 4839 6.484977 CCTCTCTATTTCTTCCATTTACTGCC 59.515 42.308 0.00 0.00 0.00 4.85
1696 4840 6.357367 TCTCTATTTCTTCCATTTACTGCCC 58.643 40.000 0.00 0.00 0.00 5.36
1698 4842 2.122783 TTCTTCCATTTACTGCCCCG 57.877 50.000 0.00 0.00 0.00 5.73
1699 4843 0.393808 TCTTCCATTTACTGCCCCGC 60.394 55.000 0.00 0.00 0.00 6.13
1702 4846 0.251386 TCCATTTACTGCCCCGCAAA 60.251 50.000 0.00 0.00 38.41 3.68
1703 4847 0.605589 CCATTTACTGCCCCGCAAAA 59.394 50.000 0.00 0.00 38.41 2.44
1740 4884 8.045176 ACTAGAAAACCAAAATCTCATGTAGC 57.955 34.615 0.00 0.00 0.00 3.58
1747 4891 7.383102 ACCAAAATCTCATGTAGCAACTAAG 57.617 36.000 0.00 0.00 0.00 2.18
1754 4905 4.893608 TCATGTAGCAACTAAGCTGTTCA 58.106 39.130 0.00 0.00 46.11 3.18
1759 4910 6.437928 TGTAGCAACTAAGCTGTTCAATTTG 58.562 36.000 0.00 0.00 46.11 2.32
1769 4920 3.305608 GCTGTTCAATTTGGGAGTTCTGG 60.306 47.826 0.00 0.00 0.00 3.86
1779 4931 4.034285 TGGGAGTTCTGGGAGATTTTTC 57.966 45.455 0.00 0.00 0.00 2.29
1791 4943 7.995488 TCTGGGAGATTTTTCTCTATGATTTCC 59.005 37.037 3.26 0.00 36.97 3.13
1811 4963 2.288825 CCAGAGGTCGACTAGCACAAAA 60.289 50.000 16.46 0.00 0.00 2.44
1812 4964 2.989840 CAGAGGTCGACTAGCACAAAAG 59.010 50.000 16.46 0.00 0.00 2.27
1834 4986 2.681152 GTGTTCCACGCCTACAAAAG 57.319 50.000 0.00 0.00 0.00 2.27
1835 4987 2.215196 GTGTTCCACGCCTACAAAAGA 58.785 47.619 0.00 0.00 0.00 2.52
1836 4988 2.032290 GTGTTCCACGCCTACAAAAGAC 60.032 50.000 0.00 0.00 0.00 3.01
1837 4989 2.215196 GTTCCACGCCTACAAAAGACA 58.785 47.619 0.00 0.00 0.00 3.41
1838 4990 2.614983 GTTCCACGCCTACAAAAGACAA 59.385 45.455 0.00 0.00 0.00 3.18
1839 4991 2.920524 TCCACGCCTACAAAAGACAAA 58.079 42.857 0.00 0.00 0.00 2.83
1841 4993 2.616842 CCACGCCTACAAAAGACAAACT 59.383 45.455 0.00 0.00 0.00 2.66
1842 4994 3.548014 CCACGCCTACAAAAGACAAACTG 60.548 47.826 0.00 0.00 0.00 3.16
1843 4995 3.064820 CACGCCTACAAAAGACAAACTGT 59.935 43.478 0.00 0.00 0.00 3.55
1844 4996 3.064820 ACGCCTACAAAAGACAAACTGTG 59.935 43.478 0.00 0.00 0.00 3.66
1845 4997 3.064820 CGCCTACAAAAGACAAACTGTGT 59.935 43.478 0.00 0.00 45.74 3.72
1846 4998 4.351192 GCCTACAAAAGACAAACTGTGTG 58.649 43.478 0.00 0.00 41.96 3.82
1847 4999 4.142469 GCCTACAAAAGACAAACTGTGTGT 60.142 41.667 2.60 2.60 41.96 3.72
1848 5000 5.331902 CCTACAAAAGACAAACTGTGTGTG 58.668 41.667 8.65 0.00 41.96 3.82
1851 5003 2.919666 AAGACAAACTGTGTGTGCAC 57.080 45.000 8.65 10.75 41.96 4.57
1854 5006 1.405105 GACAAACTGTGTGTGCACCAT 59.595 47.619 15.69 0.00 44.65 3.55
1855 5007 1.134753 ACAAACTGTGTGTGCACCATG 59.865 47.619 15.69 8.96 44.65 3.66
1856 5008 0.746063 AAACTGTGTGTGCACCATGG 59.254 50.000 15.69 11.19 44.65 3.66
1857 5009 1.737355 AACTGTGTGTGCACCATGGC 61.737 55.000 15.69 0.00 44.65 4.40
1858 5010 2.911509 TGTGTGTGCACCATGGCC 60.912 61.111 15.69 3.53 44.65 5.36
1859 5011 2.911509 GTGTGTGCACCATGGCCA 60.912 61.111 15.69 8.56 39.61 5.36
1860 5012 2.911509 TGTGTGCACCATGGCCAC 60.912 61.111 22.73 22.73 36.29 5.01
1861 5013 3.683937 GTGTGCACCATGGCCACC 61.684 66.667 25.11 16.28 32.39 4.61
1901 5063 3.363178 GCTGTGTCAGTTACAAAACAGC 58.637 45.455 14.30 14.30 43.93 4.40
2002 5164 1.286849 AGCCTATAAAACCCCACCCAC 59.713 52.381 0.00 0.00 0.00 4.61
2003 5165 1.006162 GCCTATAAAACCCCACCCACA 59.994 52.381 0.00 0.00 0.00 4.17
2004 5166 2.358826 GCCTATAAAACCCCACCCACAT 60.359 50.000 0.00 0.00 0.00 3.21
2014 5176 0.543749 CCACCCACATCTCCTTCCTC 59.456 60.000 0.00 0.00 0.00 3.71
2041 5203 1.209504 TCCTACATCTTCCCAAAGCCG 59.790 52.381 0.00 0.00 32.18 5.52
2042 5204 1.668419 CTACATCTTCCCAAAGCCGG 58.332 55.000 0.00 0.00 32.18 6.13
2043 5205 0.393808 TACATCTTCCCAAAGCCGGC 60.394 55.000 21.89 21.89 32.18 6.13
2044 5206 2.043953 ATCTTCCCAAAGCCGGCC 60.044 61.111 26.15 5.07 32.18 6.13
2074 5240 2.742530 GCAGAGCAGAATCCTTGGAGAG 60.743 54.545 0.00 0.00 0.00 3.20
2075 5241 2.500910 CAGAGCAGAATCCTTGGAGAGT 59.499 50.000 0.00 0.00 0.00 3.24
2076 5242 3.703556 CAGAGCAGAATCCTTGGAGAGTA 59.296 47.826 0.00 0.00 0.00 2.59
2077 5243 4.344679 CAGAGCAGAATCCTTGGAGAGTAT 59.655 45.833 0.00 0.00 0.00 2.12
2100 5266 4.406003 TCTTCTTCTTCCATAGTAGCCCAC 59.594 45.833 0.00 0.00 0.00 4.61
2128 5303 1.598882 TTGCCAAGATGTACAACGCA 58.401 45.000 0.00 0.00 0.00 5.24
2161 5336 0.818296 AGATGTCCTACACGGAGCAC 59.182 55.000 0.00 0.00 44.20 4.40
2290 14780 3.184683 GCTCTGCTCGTCTTGCCG 61.185 66.667 0.00 0.00 0.00 5.69
2347 14883 1.034838 GCAGAGGCCGAGAGAGAGAA 61.035 60.000 0.00 0.00 0.00 2.87
2353 14889 2.091885 AGGCCGAGAGAGAGAAAGAGAT 60.092 50.000 0.00 0.00 0.00 2.75
2355 14891 3.502211 GGCCGAGAGAGAGAAAGAGATAG 59.498 52.174 0.00 0.00 0.00 2.08
2356 14892 3.058224 GCCGAGAGAGAGAAAGAGATAGC 60.058 52.174 0.00 0.00 0.00 2.97
2357 14893 3.186409 CCGAGAGAGAGAAAGAGATAGCG 59.814 52.174 0.00 0.00 0.00 4.26
2380 14921 4.398673 GCTCTTCTGCCATCTGAAAAATCT 59.601 41.667 0.00 0.00 31.22 2.40
2383 14924 6.005823 TCTTCTGCCATCTGAAAAATCTTCA 58.994 36.000 0.00 0.00 31.22 3.02
2410 14953 0.173708 CGTAGAGACAGGGCAGGAAC 59.826 60.000 0.00 0.00 0.00 3.62
2413 14956 1.366319 AGAGACAGGGCAGGAACATT 58.634 50.000 0.00 0.00 0.00 2.71
2451 15002 9.317827 TCCACTAGTACTAGTTCCTGTTAATTT 57.682 33.333 29.08 4.15 43.35 1.82
2735 15298 4.630894 AGTGTCTTAGCTCGATGAGAAG 57.369 45.455 0.00 0.00 0.00 2.85
2787 15378 3.703556 TCCATCATGGTTTGTGTTGTTGT 59.296 39.130 2.79 0.00 39.03 3.32
2795 15386 3.506810 GTTTGTGTTGTTGTTGCTGCTA 58.493 40.909 0.00 0.00 0.00 3.49
2796 15387 2.842208 TGTGTTGTTGTTGCTGCTAC 57.158 45.000 7.29 7.29 0.00 3.58
2799 15419 1.065401 TGTTGTTGTTGCTGCTACTGC 59.935 47.619 14.81 8.30 40.20 4.40
2817 15437 3.144506 CTGCTTCTCACCAAATCACTGT 58.855 45.455 0.00 0.00 0.00 3.55
2820 15440 3.058639 GCTTCTCACCAAATCACTGTGTC 60.059 47.826 7.79 0.00 0.00 3.67
2821 15441 2.754472 TCTCACCAAATCACTGTGTCG 58.246 47.619 7.79 0.00 0.00 4.35
2841 15466 6.635641 GTGTCGTTTTCCTATTTGTTTTCCTC 59.364 38.462 0.00 0.00 0.00 3.71
2844 15469 6.768861 TCGTTTTCCTATTTGTTTTCCTCTCA 59.231 34.615 0.00 0.00 0.00 3.27
2860 15485 7.457380 TTCCTCTCATCCCTGAAATTATCTT 57.543 36.000 0.00 0.00 0.00 2.40
2861 15486 7.072263 TCCTCTCATCCCTGAAATTATCTTC 57.928 40.000 0.00 0.00 0.00 2.87
2862 15487 6.848631 TCCTCTCATCCCTGAAATTATCTTCT 59.151 38.462 0.00 0.00 0.00 2.85
2905 15557 3.883489 GCAACCTACTAATGATTCCCCAC 59.117 47.826 0.00 0.00 0.00 4.61
2931 15583 2.937519 TGTGGCTGACAAATGTTGGTA 58.062 42.857 0.00 0.00 34.12 3.25
2946 15598 4.832248 TGTTGGTAGAGCAGATTAACCTG 58.168 43.478 0.00 0.00 37.23 4.00
3082 15734 4.596354 ATTTTTCCCCATACCCGTTACT 57.404 40.909 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.396435 TGACAACGGCCACAAGAGAT 59.604 50.000 2.24 0.00 0.00 2.75
3 4 0.179234 TTGACAACGGCCACAAGAGA 59.821 50.000 2.24 0.00 0.00 3.10
4 5 0.588252 CTTGACAACGGCCACAAGAG 59.412 55.000 2.24 0.00 41.16 2.85
5 6 0.179234 TCTTGACAACGGCCACAAGA 59.821 50.000 16.57 16.57 43.79 3.02
6 7 1.021202 TTCTTGACAACGGCCACAAG 58.979 50.000 2.24 10.04 40.37 3.16
15 2225 5.035443 AGTATATCGCTCGTTCTTGACAAC 58.965 41.667 0.00 0.00 0.00 3.32
22 2232 7.041303 TGACTATGAAAGTATATCGCTCGTTCT 60.041 37.037 0.00 0.00 39.07 3.01
24 2234 6.856938 GTGACTATGAAAGTATATCGCTCGTT 59.143 38.462 0.00 0.00 39.07 3.85
25 2235 6.205076 AGTGACTATGAAAGTATATCGCTCGT 59.795 38.462 0.00 0.00 39.07 4.18
36 2246 9.302345 CACGAATGTATAAGTGACTATGAAAGT 57.698 33.333 0.00 0.00 42.80 2.66
37 2247 9.516314 TCACGAATGTATAAGTGACTATGAAAG 57.484 33.333 0.00 0.00 38.52 2.62
39 2249 9.678941 GATCACGAATGTATAAGTGACTATGAA 57.321 33.333 0.00 0.00 44.90 2.57
40 2250 8.846211 TGATCACGAATGTATAAGTGACTATGA 58.154 33.333 0.00 0.00 44.90 2.15
41 2251 8.906693 GTGATCACGAATGTATAAGTGACTATG 58.093 37.037 10.69 0.00 44.90 2.23
42 2252 8.851145 AGTGATCACGAATGTATAAGTGACTAT 58.149 33.333 19.85 0.00 44.90 2.12
43 2253 8.221965 AGTGATCACGAATGTATAAGTGACTA 57.778 34.615 19.85 0.00 44.90 2.59
44 2254 7.101652 AGTGATCACGAATGTATAAGTGACT 57.898 36.000 19.85 0.00 44.90 3.41
45 2255 7.702772 AGAAGTGATCACGAATGTATAAGTGAC 59.297 37.037 19.85 0.00 44.90 3.67
46 2256 7.772166 AGAAGTGATCACGAATGTATAAGTGA 58.228 34.615 19.85 0.00 45.93 3.41
47 2257 7.168302 GGAGAAGTGATCACGAATGTATAAGTG 59.832 40.741 19.85 0.00 36.20 3.16
48 2258 7.068839 AGGAGAAGTGATCACGAATGTATAAGT 59.931 37.037 19.85 0.00 36.20 2.24
49 2259 7.429633 AGGAGAAGTGATCACGAATGTATAAG 58.570 38.462 19.85 0.00 36.20 1.73
50 2260 7.348080 AGGAGAAGTGATCACGAATGTATAA 57.652 36.000 19.85 0.00 36.20 0.98
86 2296 0.032017 ATCTGGCCTCCGGTAGTCTT 60.032 55.000 3.32 0.00 0.00 3.01
87 2297 0.757188 CATCTGGCCTCCGGTAGTCT 60.757 60.000 3.32 0.00 0.00 3.24
89 2299 0.325296 TTCATCTGGCCTCCGGTAGT 60.325 55.000 3.32 0.00 0.00 2.73
90 2300 0.830648 TTTCATCTGGCCTCCGGTAG 59.169 55.000 3.32 0.00 0.00 3.18
91 2301 0.539986 GTTTCATCTGGCCTCCGGTA 59.460 55.000 3.32 0.00 0.00 4.02
92 2302 1.299976 GTTTCATCTGGCCTCCGGT 59.700 57.895 3.32 0.00 0.00 5.28
93 2303 0.322456 TTGTTTCATCTGGCCTCCGG 60.322 55.000 3.32 0.00 0.00 5.14
94 2304 1.533625 TTTGTTTCATCTGGCCTCCG 58.466 50.000 3.32 0.00 0.00 4.63
115 2337 1.320344 CGACGGGGACATCAAGGAGA 61.320 60.000 0.00 0.00 0.00 3.71
171 2393 5.163581 GCTAGGTCACTGATTTACCGACTAA 60.164 44.000 0.00 0.00 38.37 2.24
181 2403 1.556911 CCACTGGCTAGGTCACTGATT 59.443 52.381 0.85 0.00 0.00 2.57
187 2409 0.541063 TTCGTCCACTGGCTAGGTCA 60.541 55.000 0.85 0.00 0.00 4.02
215 2440 4.556233 GTGTTCTTGGTTTTATCTTGGCC 58.444 43.478 0.00 0.00 0.00 5.36
273 2508 1.338107 TGGCAGTACTAGTGCACAGT 58.662 50.000 21.04 20.74 46.06 3.55
276 2511 4.273480 CCAATATTGGCAGTACTAGTGCAC 59.727 45.833 21.32 9.40 46.06 4.57
416 3121 5.120830 CCATTGAGTTGAGTTACTACAGTGC 59.879 44.000 0.00 0.00 0.00 4.40
417 3122 6.223852 ACCATTGAGTTGAGTTACTACAGTG 58.776 40.000 0.00 0.00 0.00 3.66
418 3123 6.420913 ACCATTGAGTTGAGTTACTACAGT 57.579 37.500 0.00 0.00 0.00 3.55
423 3130 9.436957 CTGTAATTACCATTGAGTTGAGTTACT 57.563 33.333 13.01 0.00 0.00 2.24
480 3187 2.095212 GGACTTGATTGGTTTCCTTCGC 60.095 50.000 0.00 0.00 0.00 4.70
568 3283 1.732259 GATGCCCAACGACAAGTGTAG 59.268 52.381 0.00 0.00 0.00 2.74
615 3331 3.840890 TTGTCGATGCCCAACATTAAC 57.159 42.857 0.00 0.00 39.84 2.01
665 3383 3.132824 CACTACACTGCCATATCTGACCA 59.867 47.826 0.00 0.00 0.00 4.02
671 3389 7.227314 TGAATTGATTCACTACACTGCCATATC 59.773 37.037 2.39 0.00 41.51 1.63
710 3429 6.668283 AGGTTTCTAATCTGTCAGCTACCTAA 59.332 38.462 0.00 0.00 30.92 2.69
789 3515 7.377928 CCGAATGCATCTTCTGACATAAATTTC 59.622 37.037 0.00 0.00 0.00 2.17
790 3516 7.067372 TCCGAATGCATCTTCTGACATAAATTT 59.933 33.333 0.00 0.00 0.00 1.82
800 3527 1.325640 CACGTCCGAATGCATCTTCTG 59.674 52.381 0.00 0.00 0.00 3.02
817 3545 1.135972 GCTGCCAAGTGTACATTCACG 60.136 52.381 0.00 0.00 42.40 4.35
1086 4134 3.999663 GGCTGCAGATCATATCTTACCAC 59.000 47.826 20.43 0.00 37.58 4.16
1119 4201 9.822185 GACTTATATTTAAAAACGGAGGGAGTA 57.178 33.333 0.00 0.00 0.00 2.59
1120 4202 8.546322 AGACTTATATTTAAAAACGGAGGGAGT 58.454 33.333 0.00 0.00 0.00 3.85
1121 4203 8.959705 AGACTTATATTTAAAAACGGAGGGAG 57.040 34.615 0.00 0.00 0.00 4.30
1122 4204 9.743581 AAAGACTTATATTTAAAAACGGAGGGA 57.256 29.630 0.00 0.00 0.00 4.20
1123 4205 9.783256 CAAAGACTTATATTTAAAAACGGAGGG 57.217 33.333 0.00 0.00 0.00 4.30
1124 4206 9.285770 GCAAAGACTTATATTTAAAAACGGAGG 57.714 33.333 0.00 0.00 0.00 4.30
1140 4222 9.859427 CCATAATGAAATCTTTGCAAAGACTTA 57.141 29.630 37.28 27.04 46.80 2.24
1141 4223 8.587608 TCCATAATGAAATCTTTGCAAAGACTT 58.412 29.630 37.28 33.62 46.80 3.01
1142 4224 8.031277 GTCCATAATGAAATCTTTGCAAAGACT 58.969 33.333 37.28 28.00 46.80 3.24
1143 4225 8.031277 AGTCCATAATGAAATCTTTGCAAAGAC 58.969 33.333 37.28 26.55 46.80 3.01
1145 4227 9.294030 GTAGTCCATAATGAAATCTTTGCAAAG 57.706 33.333 29.53 29.53 37.36 2.77
1146 4228 8.801299 TGTAGTCCATAATGAAATCTTTGCAAA 58.199 29.630 12.14 12.14 0.00 3.68
1147 4229 8.347004 TGTAGTCCATAATGAAATCTTTGCAA 57.653 30.769 0.00 0.00 0.00 4.08
1148 4230 7.936496 TGTAGTCCATAATGAAATCTTTGCA 57.064 32.000 0.00 0.00 0.00 4.08
1149 4231 9.884465 GTATGTAGTCCATAATGAAATCTTTGC 57.116 33.333 0.00 0.00 37.77 3.68
1151 4233 9.273016 CCGTATGTAGTCCATAATGAAATCTTT 57.727 33.333 0.00 0.00 37.77 2.52
1152 4234 8.647796 TCCGTATGTAGTCCATAATGAAATCTT 58.352 33.333 0.00 0.00 37.77 2.40
1153 4235 8.190326 TCCGTATGTAGTCCATAATGAAATCT 57.810 34.615 0.00 0.00 37.77 2.40
1154 4236 8.088981 ACTCCGTATGTAGTCCATAATGAAATC 58.911 37.037 0.00 0.00 37.77 2.17
1155 4237 7.963532 ACTCCGTATGTAGTCCATAATGAAAT 58.036 34.615 0.00 0.00 37.77 2.17
1156 4238 7.356089 ACTCCGTATGTAGTCCATAATGAAA 57.644 36.000 0.00 0.00 37.77 2.69
1157 4239 6.971726 ACTCCGTATGTAGTCCATAATGAA 57.028 37.500 0.00 0.00 37.77 2.57
1158 4240 8.467963 TTTACTCCGTATGTAGTCCATAATGA 57.532 34.615 0.00 0.00 37.77 2.57
1159 4241 9.706691 ATTTTACTCCGTATGTAGTCCATAATG 57.293 33.333 0.00 0.00 37.77 1.90
1163 4245 8.921205 ACTTATTTTACTCCGTATGTAGTCCAT 58.079 33.333 0.00 0.00 37.58 3.41
1164 4246 8.192774 CACTTATTTTACTCCGTATGTAGTCCA 58.807 37.037 0.00 0.00 0.00 4.02
1165 4247 8.408601 TCACTTATTTTACTCCGTATGTAGTCC 58.591 37.037 0.00 0.00 0.00 3.85
1166 4248 9.793252 TTCACTTATTTTACTCCGTATGTAGTC 57.207 33.333 0.00 0.00 0.00 2.59
1173 4255 9.793252 GTGTAGATTCACTTATTTTACTCCGTA 57.207 33.333 0.00 0.00 35.68 4.02
1174 4256 8.529476 AGTGTAGATTCACTTATTTTACTCCGT 58.471 33.333 0.00 0.00 44.92 4.69
1175 4257 8.928270 AGTGTAGATTCACTTATTTTACTCCG 57.072 34.615 0.00 0.00 44.92 4.63
1184 4266 9.890629 TGCATTTTAGAGTGTAGATTCACTTAT 57.109 29.630 0.98 0.00 46.81 1.73
1185 4267 9.890629 ATGCATTTTAGAGTGTAGATTCACTTA 57.109 29.630 0.00 0.00 46.81 2.24
1186 4268 8.798859 ATGCATTTTAGAGTGTAGATTCACTT 57.201 30.769 0.00 0.00 46.81 3.16
1188 4270 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
1198 4280 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
1199 4281 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
1203 4285 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1204 4286 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1205 4287 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1206 4288 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1207 4289 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1208 4290 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1209 4291 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
1210 4292 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
1211 4293 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
1212 4294 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
1213 4295 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
1214 4296 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
1215 4297 6.250711 ACTATGGACCACATACGGATGTATA 58.749 40.000 14.23 6.48 44.82 1.47
1216 4298 5.084519 ACTATGGACCACATACGGATGTAT 58.915 41.667 14.23 4.48 44.82 2.29
1217 4299 4.476297 ACTATGGACCACATACGGATGTA 58.524 43.478 14.23 0.00 44.82 2.29
1219 4301 5.462530 TTACTATGGACCACATACGGATG 57.537 43.478 5.94 5.94 41.03 3.51
1220 4302 6.488769 TTTTACTATGGACCACATACGGAT 57.511 37.500 0.00 0.00 41.03 4.18
1221 4303 5.936187 TTTTACTATGGACCACATACGGA 57.064 39.130 0.00 0.00 41.03 4.69
1222 4304 6.522054 AGATTTTACTATGGACCACATACGG 58.478 40.000 0.00 0.00 41.03 4.02
1223 4305 8.433421 AAAGATTTTACTATGGACCACATACG 57.567 34.615 0.00 0.00 41.03 3.06
1250 4332 9.635520 CTCTCCGTTTCTAAATACAAGTCTTTA 57.364 33.333 0.00 0.00 0.00 1.85
1251 4333 8.365647 TCTCTCCGTTTCTAAATACAAGTCTTT 58.634 33.333 0.00 0.00 0.00 2.52
1252 4334 7.893658 TCTCTCCGTTTCTAAATACAAGTCTT 58.106 34.615 0.00 0.00 0.00 3.01
1253 4335 7.177041 ACTCTCTCCGTTTCTAAATACAAGTCT 59.823 37.037 0.00 0.00 0.00 3.24
1254 4336 7.314393 ACTCTCTCCGTTTCTAAATACAAGTC 58.686 38.462 0.00 0.00 0.00 3.01
1255 4337 7.229581 ACTCTCTCCGTTTCTAAATACAAGT 57.770 36.000 0.00 0.00 0.00 3.16
1256 4338 8.675504 TCTACTCTCTCCGTTTCTAAATACAAG 58.324 37.037 0.00 0.00 0.00 3.16
1257 4339 8.571461 TCTACTCTCTCCGTTTCTAAATACAA 57.429 34.615 0.00 0.00 0.00 2.41
1258 4340 8.457261 GTTCTACTCTCTCCGTTTCTAAATACA 58.543 37.037 0.00 0.00 0.00 2.29
1259 4341 7.914871 GGTTCTACTCTCTCCGTTTCTAAATAC 59.085 40.741 0.00 0.00 0.00 1.89
1260 4342 7.833183 AGGTTCTACTCTCTCCGTTTCTAAATA 59.167 37.037 0.00 0.00 0.00 1.40
1261 4343 6.664384 AGGTTCTACTCTCTCCGTTTCTAAAT 59.336 38.462 0.00 0.00 0.00 1.40
1262 4344 6.008960 AGGTTCTACTCTCTCCGTTTCTAAA 58.991 40.000 0.00 0.00 0.00 1.85
1263 4345 5.568392 AGGTTCTACTCTCTCCGTTTCTAA 58.432 41.667 0.00 0.00 0.00 2.10
1264 4346 5.176741 AGGTTCTACTCTCTCCGTTTCTA 57.823 43.478 0.00 0.00 0.00 2.10
1265 4347 4.036941 AGGTTCTACTCTCTCCGTTTCT 57.963 45.455 0.00 0.00 0.00 2.52
1266 4348 4.787260 AAGGTTCTACTCTCTCCGTTTC 57.213 45.455 0.00 0.00 0.00 2.78
1267 4349 5.548181 AAAAGGTTCTACTCTCTCCGTTT 57.452 39.130 0.00 0.00 0.00 3.60
1268 4350 5.304871 AGAAAAAGGTTCTACTCTCTCCGTT 59.695 40.000 0.00 0.00 0.00 4.44
1269 4351 4.833938 AGAAAAAGGTTCTACTCTCTCCGT 59.166 41.667 0.00 0.00 0.00 4.69
1270 4352 5.047943 TCAGAAAAAGGTTCTACTCTCTCCG 60.048 44.000 0.00 0.00 0.00 4.63
1271 4353 6.347859 TCAGAAAAAGGTTCTACTCTCTCC 57.652 41.667 0.00 0.00 0.00 3.71
1272 4354 6.367695 GCTTCAGAAAAAGGTTCTACTCTCTC 59.632 42.308 0.00 0.00 0.00 3.20
1273 4355 6.183361 TGCTTCAGAAAAAGGTTCTACTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
1274 4356 5.992217 TGCTTCAGAAAAAGGTTCTACTCTC 59.008 40.000 0.00 0.00 0.00 3.20
1275 4357 5.930135 TGCTTCAGAAAAAGGTTCTACTCT 58.070 37.500 0.00 0.00 0.00 3.24
1276 4358 6.428159 TCATGCTTCAGAAAAAGGTTCTACTC 59.572 38.462 0.00 0.00 0.00 2.59
1277 4359 6.299141 TCATGCTTCAGAAAAAGGTTCTACT 58.701 36.000 0.00 0.00 0.00 2.57
1278 4360 6.560253 TCATGCTTCAGAAAAAGGTTCTAC 57.440 37.500 0.00 0.00 0.00 2.59
1279 4361 6.716628 ACATCATGCTTCAGAAAAAGGTTCTA 59.283 34.615 0.00 0.00 0.00 2.10
1280 4362 5.537674 ACATCATGCTTCAGAAAAAGGTTCT 59.462 36.000 0.00 0.00 0.00 3.01
1281 4363 5.632347 CACATCATGCTTCAGAAAAAGGTTC 59.368 40.000 0.00 0.00 0.00 3.62
1282 4364 5.302568 TCACATCATGCTTCAGAAAAAGGTT 59.697 36.000 0.00 0.00 0.00 3.50
1283 4365 4.828939 TCACATCATGCTTCAGAAAAAGGT 59.171 37.500 0.00 0.00 0.00 3.50
1284 4366 5.381174 TCACATCATGCTTCAGAAAAAGG 57.619 39.130 0.00 0.00 0.00 3.11
1285 4367 5.288712 GCATCACATCATGCTTCAGAAAAAG 59.711 40.000 0.00 0.00 45.03 2.27
1309 4391 5.814188 TCTGCATATCTGTTCTTAGTGCAAG 59.186 40.000 0.00 0.00 40.15 4.01
1355 4450 9.241317 CTAATTATTAATCAGCCTGCAAAGTTG 57.759 33.333 0.00 0.00 0.00 3.16
1385 4481 3.680156 GCCAATTTGCCTCGGTCA 58.320 55.556 0.00 0.00 0.00 4.02
1395 4491 1.977854 GGGAAGGAACAAGGCCAATTT 59.022 47.619 5.01 0.00 0.00 1.82
1402 4498 2.041081 TGTATGGTGGGAAGGAACAAGG 59.959 50.000 0.00 0.00 0.00 3.61
1430 4538 2.051076 GTGTGTGTGCATGCCGTG 60.051 61.111 16.68 0.00 0.00 4.94
1431 4539 2.515757 TGTGTGTGTGCATGCCGT 60.516 55.556 16.68 0.00 0.00 5.68
1432 4540 2.051076 GTGTGTGTGTGCATGCCG 60.051 61.111 16.68 0.00 0.00 5.69
1434 4542 0.866906 GTGTGTGTGTGTGTGCATGC 60.867 55.000 11.82 11.82 0.00 4.06
1435 4543 0.450983 TGTGTGTGTGTGTGTGCATG 59.549 50.000 0.00 0.00 0.00 4.06
1436 4544 0.451383 GTGTGTGTGTGTGTGTGCAT 59.549 50.000 0.00 0.00 0.00 3.96
1437 4545 1.581727 GGTGTGTGTGTGTGTGTGCA 61.582 55.000 0.00 0.00 0.00 4.57
1438 4546 1.136565 GGTGTGTGTGTGTGTGTGC 59.863 57.895 0.00 0.00 0.00 4.57
1439 4547 0.957888 TGGGTGTGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1440 4548 0.034574 ATGGGTGTGTGTGTGTGTGT 60.035 50.000 0.00 0.00 0.00 3.72
1441 4549 0.662619 GATGGGTGTGTGTGTGTGTG 59.337 55.000 0.00 0.00 0.00 3.82
1442 4550 0.254462 TGATGGGTGTGTGTGTGTGT 59.746 50.000 0.00 0.00 0.00 3.72
1443 4551 1.267533 CATGATGGGTGTGTGTGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
1444 4552 1.608055 CATGATGGGTGTGTGTGTGT 58.392 50.000 0.00 0.00 0.00 3.72
1474 4606 2.031595 CGATCTGGACTATGAGGTCACG 60.032 54.545 0.00 0.00 37.91 4.35
1475 4607 3.215151 TCGATCTGGACTATGAGGTCAC 58.785 50.000 0.00 0.00 37.91 3.67
1476 4608 3.577805 TCGATCTGGACTATGAGGTCA 57.422 47.619 0.00 0.00 37.91 4.02
1477 4609 4.638421 CCTATCGATCTGGACTATGAGGTC 59.362 50.000 0.00 0.00 35.66 3.85
1478 4610 4.043561 ACCTATCGATCTGGACTATGAGGT 59.956 45.833 20.09 12.45 0.00 3.85
1479 4611 4.397730 CACCTATCGATCTGGACTATGAGG 59.602 50.000 20.09 11.88 0.00 3.86
1480 4612 4.397730 CCACCTATCGATCTGGACTATGAG 59.602 50.000 20.09 1.65 0.00 2.90
1481 4613 4.202577 ACCACCTATCGATCTGGACTATGA 60.203 45.833 20.09 0.00 0.00 2.15
1482 4614 4.082517 CACCACCTATCGATCTGGACTATG 60.083 50.000 20.09 10.14 0.00 2.23
1483 4615 4.082845 CACCACCTATCGATCTGGACTAT 58.917 47.826 20.09 4.26 0.00 2.12
1484 4616 3.487372 CACCACCTATCGATCTGGACTA 58.513 50.000 20.09 0.00 0.00 2.59
1485 4617 2.311463 CACCACCTATCGATCTGGACT 58.689 52.381 20.09 0.76 0.00 3.85
1486 4618 1.341531 CCACCACCTATCGATCTGGAC 59.658 57.143 20.09 0.00 0.00 4.02
1487 4619 1.216930 TCCACCACCTATCGATCTGGA 59.783 52.381 20.09 10.98 0.00 3.86
1488 4620 1.704641 TCCACCACCTATCGATCTGG 58.295 55.000 0.00 8.57 0.00 3.86
1489 4621 4.342862 AAATCCACCACCTATCGATCTG 57.657 45.455 0.00 0.00 0.00 2.90
1490 4622 6.688073 AATAAATCCACCACCTATCGATCT 57.312 37.500 0.00 0.00 0.00 2.75
1491 4623 6.969828 GAATAAATCCACCACCTATCGATC 57.030 41.667 0.00 0.00 0.00 3.69
1510 4642 1.839994 CAGTTCTGAGGGGCTGGAATA 59.160 52.381 0.00 0.00 0.00 1.75
1515 4647 1.298014 GGTCAGTTCTGAGGGGCTG 59.702 63.158 2.53 0.00 0.00 4.85
1521 4653 1.967066 AGGTGAGTGGTCAGTTCTGAG 59.033 52.381 2.53 0.00 31.53 3.35
1549 4681 8.798859 TTTTTGAATGAAGAGAGGATTCCTAG 57.201 34.615 4.86 0.00 31.76 3.02
1550 4682 8.605947 TCTTTTTGAATGAAGAGAGGATTCCTA 58.394 33.333 4.86 0.00 31.76 2.94
1551 4683 7.465116 TCTTTTTGAATGAAGAGAGGATTCCT 58.535 34.615 4.44 4.44 36.03 3.36
1552 4684 7.693969 TCTTTTTGAATGAAGAGAGGATTCC 57.306 36.000 0.00 0.00 0.00 3.01
1561 4693 7.880160 TCCTGACTTTCTTTTTGAATGAAGA 57.120 32.000 0.00 0.00 34.89 2.87
1562 4694 9.189723 GAATCCTGACTTTCTTTTTGAATGAAG 57.810 33.333 0.00 0.00 34.89 3.02
1566 4698 8.010733 TGTGAATCCTGACTTTCTTTTTGAAT 57.989 30.769 0.00 0.00 34.24 2.57
1599 4732 1.414550 GACCAGGCCTATCTCTTGGTC 59.585 57.143 19.01 19.01 37.73 4.02
1609 4742 1.987855 CCAACTCGGACCAGGCCTA 60.988 63.158 3.98 0.00 36.56 3.93
1622 4766 0.605319 TTCTCCATTTCGCGCCAACT 60.605 50.000 0.00 0.00 0.00 3.16
1631 4775 9.196552 CTGTCCTTGTTTAATTTTCTCCATTTC 57.803 33.333 0.00 0.00 0.00 2.17
1633 4777 8.250143 ACTGTCCTTGTTTAATTTTCTCCATT 57.750 30.769 0.00 0.00 0.00 3.16
1644 4788 5.502079 TGAACTTGGACTGTCCTTGTTTAA 58.498 37.500 26.03 17.76 37.46 1.52
1645 4789 5.105567 TGAACTTGGACTGTCCTTGTTTA 57.894 39.130 26.03 21.36 37.46 2.01
1646 4790 3.963129 TGAACTTGGACTGTCCTTGTTT 58.037 40.909 26.03 14.15 37.46 2.83
1647 4791 3.644966 TGAACTTGGACTGTCCTTGTT 57.355 42.857 26.03 25.96 37.46 2.83
1648 4792 3.279434 GTTGAACTTGGACTGTCCTTGT 58.721 45.455 26.03 20.32 37.46 3.16
1653 4797 2.104963 AGAGGGTTGAACTTGGACTGTC 59.895 50.000 0.00 0.00 0.00 3.51
1658 4802 5.548056 AGAAATAGAGAGGGTTGAACTTGGA 59.452 40.000 0.00 0.00 0.00 3.53
1666 4810 8.049721 AGTAAATGGAAGAAATAGAGAGGGTTG 58.950 37.037 0.00 0.00 0.00 3.77
1679 4823 1.953311 GCGGGGCAGTAAATGGAAGAA 60.953 52.381 0.00 0.00 0.00 2.52
1681 4825 0.679640 TGCGGGGCAGTAAATGGAAG 60.680 55.000 0.00 0.00 33.32 3.46
1684 4828 0.605589 TTTTGCGGGGCAGTAAATGG 59.394 50.000 0.00 0.00 40.61 3.16
1715 4859 7.665559 TGCTACATGAGATTTTGGTTTTCTAGT 59.334 33.333 0.00 0.00 0.00 2.57
1717 4861 7.994425 TGCTACATGAGATTTTGGTTTTCTA 57.006 32.000 0.00 0.00 0.00 2.10
1718 4862 6.899393 TGCTACATGAGATTTTGGTTTTCT 57.101 33.333 0.00 0.00 0.00 2.52
1719 4863 7.147976 AGTTGCTACATGAGATTTTGGTTTTC 58.852 34.615 0.00 0.00 0.00 2.29
1722 4866 7.575720 GCTTAGTTGCTACATGAGATTTTGGTT 60.576 37.037 0.00 0.00 0.00 3.67
1723 4867 6.127897 GCTTAGTTGCTACATGAGATTTTGGT 60.128 38.462 0.00 0.00 0.00 3.67
1724 4868 6.094603 AGCTTAGTTGCTACATGAGATTTTGG 59.905 38.462 0.00 0.00 42.10 3.28
1725 4869 6.965500 CAGCTTAGTTGCTACATGAGATTTTG 59.035 38.462 0.00 0.00 41.98 2.44
1726 4870 6.656693 ACAGCTTAGTTGCTACATGAGATTTT 59.343 34.615 0.00 0.00 41.98 1.82
1727 4871 6.176183 ACAGCTTAGTTGCTACATGAGATTT 58.824 36.000 0.00 0.00 41.98 2.17
1728 4872 5.738909 ACAGCTTAGTTGCTACATGAGATT 58.261 37.500 0.00 0.00 41.98 2.40
1729 4873 5.350504 ACAGCTTAGTTGCTACATGAGAT 57.649 39.130 0.00 0.00 41.98 2.75
1730 4874 4.808414 ACAGCTTAGTTGCTACATGAGA 57.192 40.909 0.00 0.00 41.98 3.27
1740 4884 5.010012 ACTCCCAAATTGAACAGCTTAGTTG 59.990 40.000 0.00 0.00 0.00 3.16
1747 4891 3.305608 CCAGAACTCCCAAATTGAACAGC 60.306 47.826 0.00 0.00 0.00 4.40
1754 4905 4.682021 AATCTCCCAGAACTCCCAAATT 57.318 40.909 0.00 0.00 0.00 1.82
1759 4910 4.018870 AGAGAAAAATCTCCCAGAACTCCC 60.019 45.833 2.35 0.00 37.46 4.30
1769 4920 8.970859 TCTGGAAATCATAGAGAAAAATCTCC 57.029 34.615 2.35 0.00 37.46 3.71
1779 4931 4.582656 AGTCGACCTCTGGAAATCATAGAG 59.417 45.833 13.01 0.00 38.10 2.43
1791 4943 2.724977 TTTGTGCTAGTCGACCTCTG 57.275 50.000 13.01 1.06 0.00 3.35
1826 4978 4.793216 GCACACACAGTTTGTCTTTTGTAG 59.207 41.667 0.00 0.00 35.67 2.74
1828 4980 3.005261 TGCACACACAGTTTGTCTTTTGT 59.995 39.130 0.00 0.00 35.67 2.83
1842 4994 2.911509 TGGCCATGGTGCACACAC 60.912 61.111 20.43 1.36 46.66 3.82
1843 4995 2.911509 GTGGCCATGGTGCACACA 60.912 61.111 20.43 14.54 34.56 3.72
1844 4996 3.683937 GGTGGCCATGGTGCACAC 61.684 66.667 20.43 16.27 34.03 3.82
1879 5035 3.792124 GCTGTTTTGTAACTGACACAGCC 60.792 47.826 10.36 0.00 44.28 4.85
1887 5043 2.116366 GGCAACGCTGTTTTGTAACTG 58.884 47.619 0.00 0.00 36.58 3.16
1901 5063 0.238289 CCTAAGCACAAGTGGCAACG 59.762 55.000 2.00 0.00 42.51 4.10
1970 5132 1.048724 TATAGGCTGGGAACGCAGCT 61.049 55.000 31.37 22.80 46.62 4.24
1971 5133 0.179056 TTATAGGCTGGGAACGCAGC 60.179 55.000 27.48 27.48 46.68 5.25
1972 5134 2.325583 TTTATAGGCTGGGAACGCAG 57.674 50.000 13.25 13.25 0.00 5.18
1973 5135 2.361789 GTTTTATAGGCTGGGAACGCA 58.638 47.619 0.00 0.00 0.00 5.24
1976 5138 2.024751 TGGGGTTTTATAGGCTGGGAAC 60.025 50.000 0.00 0.00 0.00 3.62
2002 5164 3.715834 AGGATTGGAAGAGGAAGGAGATG 59.284 47.826 0.00 0.00 0.00 2.90
2003 5165 4.019657 AGGATTGGAAGAGGAAGGAGAT 57.980 45.455 0.00 0.00 0.00 2.75
2004 5166 3.498614 AGGATTGGAAGAGGAAGGAGA 57.501 47.619 0.00 0.00 0.00 3.71
2014 5176 4.778213 TGGGAAGATGTAGGATTGGAAG 57.222 45.455 0.00 0.00 0.00 3.46
2041 5203 2.583520 CTCTGCTCTCCTGTGGCC 59.416 66.667 0.00 0.00 0.00 5.36
2042 5204 2.125188 GCTCTGCTCTCCTGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
2043 5205 1.218585 CTGCTCTGCTCTCCTGTGG 59.781 63.158 0.00 0.00 0.00 4.17
2044 5206 0.607112 TTCTGCTCTGCTCTCCTGTG 59.393 55.000 0.00 0.00 0.00 3.66
2074 5240 6.267928 TGGGCTACTATGGAAGAAGAAGATAC 59.732 42.308 0.00 0.00 0.00 2.24
2075 5241 6.267928 GTGGGCTACTATGGAAGAAGAAGATA 59.732 42.308 0.00 0.00 0.00 1.98
2076 5242 5.071115 GTGGGCTACTATGGAAGAAGAAGAT 59.929 44.000 0.00 0.00 0.00 2.40
2077 5243 4.406003 GTGGGCTACTATGGAAGAAGAAGA 59.594 45.833 0.00 0.00 0.00 2.87
2100 5266 1.079073 ATCTTGGCAAAGGGTGGGG 59.921 57.895 0.00 0.00 33.90 4.96
2128 5303 4.779733 ATCTCCTGCCCCGACGGT 62.780 66.667 13.94 0.00 0.00 4.83
2214 5389 2.252127 AAGTGTGTGTGTGTGTGCGC 62.252 55.000 0.00 0.00 0.00 6.09
2216 14698 1.068610 ACAAAGTGTGTGTGTGTGTGC 60.069 47.619 0.00 0.00 39.72 4.57
2296 14786 2.333926 CACACGCCGAGAGATTTTACA 58.666 47.619 0.00 0.00 0.00 2.41
2325 14816 0.183731 TCTCTCTCGGCCTCTGCATA 59.816 55.000 0.00 0.00 40.13 3.14
2353 14889 0.103755 CAGATGGCAGAAGAGCGCTA 59.896 55.000 11.50 0.00 34.64 4.26
2355 14891 0.742281 TTCAGATGGCAGAAGAGCGC 60.742 55.000 0.00 0.00 34.64 5.92
2356 14892 1.730501 TTTCAGATGGCAGAAGAGCG 58.269 50.000 0.00 0.00 34.64 5.03
2357 14893 4.398673 AGATTTTTCAGATGGCAGAAGAGC 59.601 41.667 0.00 0.00 0.00 4.09
2380 14921 4.399618 CCCTGTCTCTACGATTTCTCTGAA 59.600 45.833 0.00 0.00 0.00 3.02
2383 14924 2.691011 GCCCTGTCTCTACGATTTCTCT 59.309 50.000 0.00 0.00 0.00 3.10
2392 14933 1.267121 TGTTCCTGCCCTGTCTCTAC 58.733 55.000 0.00 0.00 0.00 2.59
2413 14956 7.970294 ACTAGTACTAGTGGAATCAGTCCCAAA 60.970 40.741 30.33 0.00 44.11 3.28
2787 15378 1.609061 GGTGAGAAGCAGTAGCAGCAA 60.609 52.381 0.00 0.00 45.49 3.91
2795 15386 3.144506 CAGTGATTTGGTGAGAAGCAGT 58.855 45.455 0.00 0.00 0.00 4.40
2796 15387 3.058432 CACAGTGATTTGGTGAGAAGCAG 60.058 47.826 0.00 0.00 34.52 4.24
2799 15419 3.185188 CGACACAGTGATTTGGTGAGAAG 59.815 47.826 7.81 0.00 36.42 2.85
2817 15437 6.544564 AGAGGAAAACAAATAGGAAAACGACA 59.455 34.615 0.00 0.00 0.00 4.35
2820 15440 6.966021 TGAGAGGAAAACAAATAGGAAAACG 58.034 36.000 0.00 0.00 0.00 3.60
2821 15441 8.029522 GGATGAGAGGAAAACAAATAGGAAAAC 58.970 37.037 0.00 0.00 0.00 2.43
2844 15469 9.726438 CGGTATTTAGAAGATAATTTCAGGGAT 57.274 33.333 0.00 0.00 0.00 3.85
2860 15485 8.270080 TGCACATGTTTATTTCGGTATTTAGA 57.730 30.769 0.00 0.00 0.00 2.10
2861 15486 8.794406 GTTGCACATGTTTATTTCGGTATTTAG 58.206 33.333 0.00 0.00 0.00 1.85
2862 15487 7.755822 GGTTGCACATGTTTATTTCGGTATTTA 59.244 33.333 0.00 0.00 0.00 1.40
2865 15490 5.417580 AGGTTGCACATGTTTATTTCGGTAT 59.582 36.000 0.00 0.00 0.00 2.73
2869 15521 5.938322 AGTAGGTTGCACATGTTTATTTCG 58.062 37.500 0.00 0.00 0.00 3.46
2905 15557 2.099592 ACATTTGTCAGCCACAACAGTG 59.900 45.455 0.00 0.00 45.12 3.66
2920 15572 6.375455 AGGTTAATCTGCTCTACCAACATTTG 59.625 38.462 0.00 0.00 0.00 2.32
2922 15574 5.882557 CAGGTTAATCTGCTCTACCAACATT 59.117 40.000 2.04 0.00 0.00 2.71
3082 15734 1.477553 GTACCCATGTACCCTGTCGA 58.522 55.000 0.00 0.00 41.27 4.20
3205 15868 9.130312 GATGTGTTGTTGTTTAAAAGTGTGTTA 57.870 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.