Multiple sequence alignment - TraesCS4A01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G389400 chr4A 100.000 3941 0 0 1 3941 666950278 666946338 0.000000e+00 7278
1 TraesCS4A01G389400 chr4A 81.879 1501 218 42 1236 2716 17893064 17891598 0.000000e+00 1216
2 TraesCS4A01G389400 chr4A 78.716 1184 218 24 1658 2823 18276259 18277426 0.000000e+00 760
3 TraesCS4A01G389400 chr4A 98.547 344 5 0 3592 3935 500942283 500941940 3.370000e-170 608
4 TraesCS4A01G389400 chr4A 93.429 350 23 0 3592 3941 537117623 537117274 1.620000e-143 520
5 TraesCS4A01G389400 chr4A 77.627 809 159 20 51 848 18274182 18274979 4.610000e-129 472
6 TraesCS4A01G389400 chr4A 80.343 641 91 13 917 1555 18275618 18276225 1.670000e-123 453
7 TraesCS4A01G389400 chr4A 81.250 192 31 4 2561 2751 18058097 18058284 2.450000e-32 150
8 TraesCS4A01G389400 chr7D 90.968 2015 125 28 856 2867 52457554 52455594 0.000000e+00 2660
9 TraesCS4A01G389400 chr7D 91.517 1332 60 20 2291 3588 52339323 52338011 0.000000e+00 1784
10 TraesCS4A01G389400 chr7D 96.966 857 26 0 7 863 52352990 52352134 0.000000e+00 1439
11 TraesCS4A01G389400 chr7D 93.678 870 54 1 1 869 52469737 52468868 0.000000e+00 1301
12 TraesCS4A01G389400 chr7D 95.331 771 35 1 1529 2299 52340663 52339894 0.000000e+00 1223
13 TraesCS4A01G389400 chr7D 90.789 684 36 4 852 1534 52350746 52350089 0.000000e+00 889
14 TraesCS4A01G389400 chr5B 78.712 1926 342 47 867 2772 64734681 64732804 0.000000e+00 1223
15 TraesCS4A01G389400 chr5B 77.195 1640 304 33 895 2510 7018449 7016856 0.000000e+00 893
16 TraesCS4A01G389400 chr5B 85.055 823 121 2 14 835 7022165 7021344 0.000000e+00 837
17 TraesCS4A01G389400 chr5B 77.604 1344 223 52 885 2199 6880462 6879168 0.000000e+00 743
18 TraesCS4A01G389400 chr5B 84.197 772 103 3 81 851 19737217 19736464 0.000000e+00 732
19 TraesCS4A01G389400 chr5B 76.967 1411 227 53 879 2266 64721157 64722492 0.000000e+00 715
20 TraesCS4A01G389400 chr5B 80.601 732 113 15 882 1611 19730823 19730119 4.480000e-149 538
21 TraesCS4A01G389400 chr5B 78.161 783 160 9 2059 2839 7016055 7015282 4.580000e-134 488
22 TraesCS4A01G389400 chr5B 78.343 688 126 10 168 851 64736547 64735879 1.310000e-114 424
23 TraesCS4A01G389400 chr5B 83.541 401 64 2 2044 2443 64627308 64626909 1.340000e-99 374
24 TraesCS4A01G389400 chr5A 77.321 1971 345 62 857 2790 4292653 4294558 0.000000e+00 1070
25 TraesCS4A01G389400 chr5A 83.948 841 131 4 13 851 4289310 4290148 0.000000e+00 802
26 TraesCS4A01G389400 chr5A 97.534 365 7 2 3578 3941 510277383 510277746 1.200000e-174 623
27 TraesCS4A01G389400 chr5D 80.326 1413 243 23 1236 2629 4049423 4048027 0.000000e+00 1037
28 TraesCS4A01G389400 chr5D 86.746 845 108 3 5 847 4052133 4051291 0.000000e+00 937
29 TraesCS4A01G389400 chr5D 79.009 1291 233 28 1559 2826 4264651 4263376 0.000000e+00 848
30 TraesCS4A01G389400 chr5D 83.017 842 136 7 14 851 4252994 4252156 0.000000e+00 756
31 TraesCS4A01G389400 chr5D 85.538 650 94 0 14 663 27350835 27350186 0.000000e+00 680
32 TraesCS4A01G389400 chr5D 78.358 670 103 18 877 1542 4267501 4266870 2.850000e-106 396
33 TraesCS4A01G389400 chr5D 77.740 292 54 5 860 1148 4049825 4049542 6.770000e-38 169
34 TraesCS4A01G389400 chr3A 98.017 353 7 0 3589 3941 94384150 94384502 7.240000e-172 614
35 TraesCS4A01G389400 chr7A 93.714 350 22 0 3592 3941 728290016 728289667 3.490000e-145 525
36 TraesCS4A01G389400 chr7A 93.484 353 22 1 3589 3941 676423400 676423751 1.250000e-144 523
37 TraesCS4A01G389400 chr6A 93.220 354 24 0 3588 3941 603562072 603562425 4.510000e-144 521
38 TraesCS4A01G389400 chr2D 93.220 354 24 0 3588 3941 33335362 33335715 4.510000e-144 521
39 TraesCS4A01G389400 chr2D 93.201 353 23 1 3589 3941 626590797 626591148 5.840000e-143 518


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G389400 chr4A 666946338 666950278 3940 True 7278.000000 7278 100.000000 1 3941 1 chr4A.!!$R4 3940
1 TraesCS4A01G389400 chr4A 17891598 17893064 1466 True 1216.000000 1216 81.879000 1236 2716 1 chr4A.!!$R1 1480
2 TraesCS4A01G389400 chr4A 18274182 18277426 3244 False 561.666667 760 78.895333 51 2823 3 chr4A.!!$F2 2772
3 TraesCS4A01G389400 chr7D 52455594 52457554 1960 True 2660.000000 2660 90.968000 856 2867 1 chr7D.!!$R1 2011
4 TraesCS4A01G389400 chr7D 52338011 52340663 2652 True 1503.500000 1784 93.424000 1529 3588 2 chr7D.!!$R3 2059
5 TraesCS4A01G389400 chr7D 52468868 52469737 869 True 1301.000000 1301 93.678000 1 869 1 chr7D.!!$R2 868
6 TraesCS4A01G389400 chr7D 52350089 52352990 2901 True 1164.000000 1439 93.877500 7 1534 2 chr7D.!!$R4 1527
7 TraesCS4A01G389400 chr5B 64732804 64736547 3743 True 823.500000 1223 78.527500 168 2772 2 chr5B.!!$R6 2604
8 TraesCS4A01G389400 chr5B 6879168 6880462 1294 True 743.000000 743 77.604000 885 2199 1 chr5B.!!$R1 1314
9 TraesCS4A01G389400 chr5B 7015282 7022165 6883 True 739.333333 893 80.137000 14 2839 3 chr5B.!!$R5 2825
10 TraesCS4A01G389400 chr5B 19736464 19737217 753 True 732.000000 732 84.197000 81 851 1 chr5B.!!$R3 770
11 TraesCS4A01G389400 chr5B 64721157 64722492 1335 False 715.000000 715 76.967000 879 2266 1 chr5B.!!$F1 1387
12 TraesCS4A01G389400 chr5B 19730119 19730823 704 True 538.000000 538 80.601000 882 1611 1 chr5B.!!$R2 729
13 TraesCS4A01G389400 chr5A 4289310 4294558 5248 False 936.000000 1070 80.634500 13 2790 2 chr5A.!!$F2 2777
14 TraesCS4A01G389400 chr5D 4252156 4252994 838 True 756.000000 756 83.017000 14 851 1 chr5D.!!$R1 837
15 TraesCS4A01G389400 chr5D 4048027 4052133 4106 True 714.333333 1037 81.604000 5 2629 3 chr5D.!!$R3 2624
16 TraesCS4A01G389400 chr5D 27350186 27350835 649 True 680.000000 680 85.538000 14 663 1 chr5D.!!$R2 649
17 TraesCS4A01G389400 chr5D 4263376 4267501 4125 True 622.000000 848 78.683500 877 2826 2 chr5D.!!$R4 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 5778 2.113807 TGCTGCAGAGTGATAGATGGT 58.886 47.619 20.43 0.0 0.00 3.55 F
1228 6100 0.043334 AGGTACATGCCTCCCTGTCT 59.957 55.000 0.00 0.0 32.39 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2755 11707 2.116827 TCGAGAGAGGAGAGGTGTTC 57.883 55.000 0.0 0.0 34.84 3.18 R
3024 11985 3.173151 GGGGGTCAAATTGAGATGGTTT 58.827 45.455 0.0 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.930950 TGCTCAGTTTGCAGGTTACTT 58.069 42.857 0.00 0.00 35.31 2.24
312 320 4.318332 TGTAACCACAAGAGATGAAGCAG 58.682 43.478 0.00 0.00 0.00 4.24
973 5778 2.113807 TGCTGCAGAGTGATAGATGGT 58.886 47.619 20.43 0.00 0.00 3.55
1055 5872 3.334691 TCTTGGCCGATCAAGTAAACAG 58.665 45.455 14.30 0.00 43.25 3.16
1069 5886 6.993308 TCAAGTAAACAGTAATGGCAGTGTTA 59.007 34.615 0.00 0.00 40.39 2.41
1221 6093 4.035675 GCATTTTCACTAGGTACATGCCTC 59.964 45.833 0.00 0.00 39.94 4.70
1222 6094 3.906720 TTTCACTAGGTACATGCCTCC 57.093 47.619 0.00 0.00 39.94 4.30
1223 6095 1.789523 TCACTAGGTACATGCCTCCC 58.210 55.000 0.00 0.00 39.94 4.30
1224 6096 1.291033 TCACTAGGTACATGCCTCCCT 59.709 52.381 0.00 0.00 39.94 4.20
1225 6097 1.414181 CACTAGGTACATGCCTCCCTG 59.586 57.143 0.00 0.00 39.94 4.45
1226 6098 1.008449 ACTAGGTACATGCCTCCCTGT 59.992 52.381 0.00 0.00 39.94 4.00
1227 6099 1.689273 CTAGGTACATGCCTCCCTGTC 59.311 57.143 0.00 0.00 39.94 3.51
1228 6100 0.043334 AGGTACATGCCTCCCTGTCT 59.957 55.000 0.00 0.00 32.39 3.41
1229 6101 0.912486 GGTACATGCCTCCCTGTCTT 59.088 55.000 0.00 0.00 0.00 3.01
1230 6102 1.407437 GGTACATGCCTCCCTGTCTTG 60.407 57.143 0.00 0.00 0.00 3.02
1231 6103 0.911769 TACATGCCTCCCTGTCTTGG 59.088 55.000 0.00 0.00 0.00 3.61
1232 6104 0.842030 ACATGCCTCCCTGTCTTGGA 60.842 55.000 0.00 0.00 0.00 3.53
1233 6105 0.549950 CATGCCTCCCTGTCTTGGAT 59.450 55.000 0.00 0.00 0.00 3.41
1234 6106 1.064166 CATGCCTCCCTGTCTTGGATT 60.064 52.381 0.00 0.00 0.00 3.01
1235 6107 1.075601 TGCCTCCCTGTCTTGGATTT 58.924 50.000 0.00 0.00 0.00 2.17
1236 6108 2.274542 TGCCTCCCTGTCTTGGATTTA 58.725 47.619 0.00 0.00 0.00 1.40
1237 6109 2.647299 TGCCTCCCTGTCTTGGATTTAA 59.353 45.455 0.00 0.00 0.00 1.52
1238 6110 3.282885 GCCTCCCTGTCTTGGATTTAAG 58.717 50.000 0.00 0.00 0.00 1.85
1239 6111 3.308473 GCCTCCCTGTCTTGGATTTAAGT 60.308 47.826 0.00 0.00 0.00 2.24
1240 6112 4.265073 CCTCCCTGTCTTGGATTTAAGTG 58.735 47.826 0.00 0.00 0.00 3.16
1241 6113 4.019321 CCTCCCTGTCTTGGATTTAAGTGA 60.019 45.833 0.00 0.00 0.00 3.41
1242 6114 5.514834 CCTCCCTGTCTTGGATTTAAGTGAA 60.515 44.000 0.00 0.00 0.00 3.18
1243 6115 6.139679 TCCCTGTCTTGGATTTAAGTGAAT 57.860 37.500 0.00 0.00 0.00 2.57
1244 6116 5.945784 TCCCTGTCTTGGATTTAAGTGAATG 59.054 40.000 0.00 0.00 0.00 2.67
1347 6219 1.270041 GCTCCAAGGATCCGAGATCAC 60.270 57.143 16.75 0.00 0.00 3.06
1449 6324 5.563475 GCCGGATTCAATTGGTGATATGAAG 60.563 44.000 5.05 0.00 35.70 3.02
1753 8838 2.105006 TGACATCTTGCTTGGCTCTC 57.895 50.000 0.00 0.00 0.00 3.20
1842 8933 2.745968 AGTTTTGGCAACCTCAGGAAA 58.254 42.857 0.00 0.00 0.00 3.13
1959 9062 2.413310 TTGTTAAATCCGGGCTCTCC 57.587 50.000 0.00 0.00 0.00 3.71
2164 9270 4.635765 TGCTAGCATTTCAATGGACTGTAC 59.364 41.667 14.93 0.00 36.90 2.90
2397 11337 1.892474 CTAGAGCTGGGTCTCTATGGC 59.108 57.143 5.55 0.00 42.77 4.40
2685 11631 2.719739 CATCAGTGGAGGTTGCTTCAT 58.280 47.619 0.00 0.00 0.00 2.57
2755 11707 5.491070 TGACCACCTCAACTGAGATTATTG 58.509 41.667 8.33 0.00 44.74 1.90
2888 11849 3.432252 AGACTTTGCCATCGACGTTTAAG 59.568 43.478 0.00 0.00 0.00 1.85
2892 11853 2.333926 TGCCATCGACGTTTAAGACTG 58.666 47.619 0.00 0.00 0.00 3.51
2909 11870 3.840666 AGACTGGAAAGATGTCTTAGCCA 59.159 43.478 13.37 13.37 37.76 4.75
2947 11908 3.405831 ACATCCATCCATTGATGCTACG 58.594 45.455 1.16 0.00 45.86 3.51
2955 11916 4.129380 TCCATTGATGCTACGAATGAAGG 58.871 43.478 0.00 0.00 30.03 3.46
3024 11985 5.523916 GCGAATCAAACTAATAGCCTGAAGA 59.476 40.000 0.00 0.00 0.00 2.87
3042 12004 6.331369 TGAAGAAACCATCTCAATTTGACC 57.669 37.500 0.00 0.00 37.42 4.02
3061 12023 2.517980 ACCCCCATATGTAAGGCAATGT 59.482 45.455 1.24 0.00 0.00 2.71
3166 12133 7.306013 AGTTAAGGGATGATCCTCTGTACATA 58.694 38.462 11.87 0.00 36.57 2.29
3167 12134 7.958583 AGTTAAGGGATGATCCTCTGTACATAT 59.041 37.037 11.87 0.00 36.57 1.78
3168 12135 8.598041 GTTAAGGGATGATCCTCTGTACATATT 58.402 37.037 11.87 0.00 36.57 1.28
3169 12136 6.617782 AGGGATGATCCTCTGTACATATTG 57.382 41.667 11.87 0.00 36.57 1.90
3170 12137 6.087456 AGGGATGATCCTCTGTACATATTGT 58.913 40.000 11.87 0.00 36.57 2.71
3171 12138 7.248976 AGGGATGATCCTCTGTACATATTGTA 58.751 38.462 11.87 0.00 36.57 2.41
3172 12139 7.179338 AGGGATGATCCTCTGTACATATTGTAC 59.821 40.741 11.87 10.19 43.62 2.90
3173 12140 7.039011 GGGATGATCCTCTGTACATATTGTACA 60.039 40.741 17.00 17.00 46.73 2.90
3174 12141 8.367911 GGATGATCCTCTGTACATATTGTACAA 58.632 37.037 18.15 11.41 46.12 2.41
3221 12188 8.868522 TGATTTCAGTTCTGAAACCTCATTAT 57.131 30.769 24.09 10.50 40.12 1.28
3299 12266 7.630242 AAGTATGTAGCTTGCATTGTAACAT 57.370 32.000 8.45 3.93 0.00 2.71
3308 12275 4.597404 TGCATTGTAACATGAAAAGGCA 57.403 36.364 0.00 4.76 37.02 4.75
3333 12300 9.543018 CATCGAAATTAAAACTAGAACCTGAAC 57.457 33.333 0.00 0.00 0.00 3.18
3370 12353 4.699637 ACACCTCAAATTAACTCGTCACA 58.300 39.130 0.00 0.00 0.00 3.58
3386 12369 7.896811 ACTCGTCACAACATGATATATATGGT 58.103 34.615 0.00 0.00 40.28 3.55
3388 12371 9.290483 CTCGTCACAACATGATATATATGGTAC 57.710 37.037 0.00 0.00 40.28 3.34
3389 12372 8.798402 TCGTCACAACATGATATATATGGTACA 58.202 33.333 0.00 0.00 41.52 2.90
3390 12373 9.418045 CGTCACAACATGATATATATGGTACAA 57.582 33.333 0.00 0.00 40.79 2.41
3404 12387 4.308526 TGGTACAATCACATAAAGGCCA 57.691 40.909 5.01 0.00 31.92 5.36
3405 12388 4.865905 TGGTACAATCACATAAAGGCCAT 58.134 39.130 5.01 0.00 31.92 4.40
3406 12389 4.644234 TGGTACAATCACATAAAGGCCATG 59.356 41.667 5.01 2.06 31.92 3.66
3466 12456 5.182487 AGCACATGACACGGTAAAATATGA 58.818 37.500 0.00 0.00 0.00 2.15
3497 12487 4.474226 AAAAGATGAGAAACAGTGCGTC 57.526 40.909 0.00 0.00 0.00 5.19
3498 12488 2.820059 AGATGAGAAACAGTGCGTCA 57.180 45.000 0.00 0.00 0.00 4.35
3530 12521 1.137086 AGATACCTACAGCCGCACAAG 59.863 52.381 0.00 0.00 0.00 3.16
3532 12523 1.541310 TACCTACAGCCGCACAAGCT 61.541 55.000 0.00 0.00 42.70 3.74
3541 12532 2.614057 AGCCGCACAAGCTGATAAATAC 59.386 45.455 0.00 0.00 39.69 1.89
3550 12545 8.184192 GCACAAGCTGATAAATACATTGTAGTT 58.816 33.333 13.39 13.39 37.91 2.24
3554 12549 9.613428 AAGCTGATAAATACATTGTAGTTAGCA 57.387 29.630 24.69 24.69 0.00 3.49
3618 12613 8.705048 TTTAACCAAAAACTACCACATTTCAC 57.295 30.769 0.00 0.00 0.00 3.18
3619 12614 4.927422 ACCAAAAACTACCACATTTCACG 58.073 39.130 0.00 0.00 0.00 4.35
3620 12615 4.641094 ACCAAAAACTACCACATTTCACGA 59.359 37.500 0.00 0.00 0.00 4.35
3621 12616 5.125739 ACCAAAAACTACCACATTTCACGAA 59.874 36.000 0.00 0.00 0.00 3.85
3622 12617 6.037098 CCAAAAACTACCACATTTCACGAAA 58.963 36.000 0.00 0.00 34.46 3.46
3623 12618 6.531948 CCAAAAACTACCACATTTCACGAAAA 59.468 34.615 0.00 0.00 33.56 2.29
3624 12619 7.387945 CAAAAACTACCACATTTCACGAAAAC 58.612 34.615 0.00 0.00 33.56 2.43
3625 12620 4.461992 ACTACCACATTTCACGAAAACG 57.538 40.909 0.00 0.00 33.56 3.60
3626 12621 3.872771 ACTACCACATTTCACGAAAACGT 59.127 39.130 0.00 0.00 33.56 3.99
3627 12622 3.059634 ACCACATTTCACGAAAACGTG 57.940 42.857 15.08 15.08 40.84 4.49
3628 12623 2.678836 ACCACATTTCACGAAAACGTGA 59.321 40.909 18.89 18.89 45.63 4.35
3629 12624 3.033185 CCACATTTCACGAAAACGTGAC 58.967 45.455 21.70 0.00 46.73 3.67
3630 12625 3.486043 CCACATTTCACGAAAACGTGACA 60.486 43.478 21.70 17.02 46.73 3.58
3631 12626 4.092120 CACATTTCACGAAAACGTGACAA 58.908 39.130 21.70 18.22 46.73 3.18
3632 12627 4.555360 CACATTTCACGAAAACGTGACAAA 59.445 37.500 21.70 15.72 46.73 2.83
3633 12628 5.059832 CACATTTCACGAAAACGTGACAAAA 59.940 36.000 21.70 15.13 46.73 2.44
3634 12629 5.629849 ACATTTCACGAAAACGTGACAAAAA 59.370 32.000 21.70 14.83 46.73 1.94
3656 12651 8.623310 AAAAACTACCACTTTACGATTTTGTG 57.377 30.769 0.00 0.00 0.00 3.33
3657 12652 5.352643 ACTACCACTTTACGATTTTGTGC 57.647 39.130 0.00 0.00 0.00 4.57
3658 12653 3.262135 ACCACTTTACGATTTTGTGCG 57.738 42.857 0.00 0.00 0.00 5.34
3659 12654 2.031508 ACCACTTTACGATTTTGTGCGG 60.032 45.455 0.00 0.00 0.00 5.69
3660 12655 2.224549 CCACTTTACGATTTTGTGCGGA 59.775 45.455 0.00 0.00 0.00 5.54
3661 12656 3.304123 CCACTTTACGATTTTGTGCGGAA 60.304 43.478 0.00 0.00 0.00 4.30
3662 12657 4.283678 CACTTTACGATTTTGTGCGGAAA 58.716 39.130 0.00 0.00 37.94 3.13
3663 12658 4.735822 CACTTTACGATTTTGTGCGGAAAA 59.264 37.500 0.00 0.00 39.54 2.29
3664 12659 4.736307 ACTTTACGATTTTGTGCGGAAAAC 59.264 37.500 0.00 0.00 39.54 2.43
3665 12660 4.555348 TTACGATTTTGTGCGGAAAACT 57.445 36.364 0.00 0.00 0.00 2.66
3666 12661 5.670149 TTACGATTTTGTGCGGAAAACTA 57.330 34.783 0.00 0.00 0.00 2.24
3667 12662 3.880610 ACGATTTTGTGCGGAAAACTAC 58.119 40.909 0.00 0.00 0.00 2.73
3668 12663 3.231160 CGATTTTGTGCGGAAAACTACC 58.769 45.455 0.00 0.00 0.00 3.18
3669 12664 3.304123 CGATTTTGTGCGGAAAACTACCA 60.304 43.478 0.00 0.00 0.00 3.25
3670 12665 3.423996 TTTTGTGCGGAAAACTACCAC 57.576 42.857 0.00 0.00 0.00 4.16
3671 12666 2.335316 TTGTGCGGAAAACTACCACT 57.665 45.000 0.00 0.00 0.00 4.00
3672 12667 2.335316 TGTGCGGAAAACTACCACTT 57.665 45.000 0.00 0.00 0.00 3.16
3673 12668 2.645802 TGTGCGGAAAACTACCACTTT 58.354 42.857 0.00 0.00 0.00 2.66
3674 12669 3.018149 TGTGCGGAAAACTACCACTTTT 58.982 40.909 0.00 0.00 0.00 2.27
3675 12670 3.181495 TGTGCGGAAAACTACCACTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
3676 12671 3.018149 TGCGGAAAACTACCACTTTTGT 58.982 40.909 0.00 0.00 0.00 2.83
3677 12672 3.065648 TGCGGAAAACTACCACTTTTGTC 59.934 43.478 0.00 0.00 0.00 3.18
3678 12673 3.549423 GCGGAAAACTACCACTTTTGTCC 60.549 47.826 0.00 0.00 0.00 4.02
3679 12674 3.881089 CGGAAAACTACCACTTTTGTCCT 59.119 43.478 0.00 0.00 0.00 3.85
3680 12675 5.058490 CGGAAAACTACCACTTTTGTCCTA 58.942 41.667 0.00 0.00 0.00 2.94
3681 12676 5.178809 CGGAAAACTACCACTTTTGTCCTAG 59.821 44.000 0.00 0.00 0.00 3.02
3682 12677 6.060136 GGAAAACTACCACTTTTGTCCTAGT 58.940 40.000 0.00 0.00 0.00 2.57
3683 12678 6.204301 GGAAAACTACCACTTTTGTCCTAGTC 59.796 42.308 0.00 0.00 0.00 2.59
3684 12679 4.886496 ACTACCACTTTTGTCCTAGTCC 57.114 45.455 0.00 0.00 0.00 3.85
3685 12680 2.833631 ACCACTTTTGTCCTAGTCCG 57.166 50.000 0.00 0.00 0.00 4.79
3686 12681 2.044758 ACCACTTTTGTCCTAGTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
3687 12682 2.224209 ACCACTTTTGTCCTAGTCCGTG 60.224 50.000 0.00 0.00 0.00 4.94
3688 12683 2.413837 CACTTTTGTCCTAGTCCGTGG 58.586 52.381 0.00 0.00 0.00 4.94
3689 12684 1.270678 ACTTTTGTCCTAGTCCGTGGC 60.271 52.381 0.00 0.00 0.00 5.01
3690 12685 0.759959 TTTTGTCCTAGTCCGTGGCA 59.240 50.000 0.00 0.00 0.00 4.92
3691 12686 0.759959 TTTGTCCTAGTCCGTGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
3692 12687 0.759959 TTGTCCTAGTCCGTGGCAAA 59.240 50.000 0.00 0.00 0.00 3.68
3693 12688 0.759959 TGTCCTAGTCCGTGGCAAAA 59.240 50.000 0.00 0.00 0.00 2.44
3694 12689 1.141254 TGTCCTAGTCCGTGGCAAAAA 59.859 47.619 0.00 0.00 0.00 1.94
3713 12708 5.746307 AAAAACTACCAAGTCTCGAAACC 57.254 39.130 0.00 0.00 33.75 3.27
3714 12709 2.719426 ACTACCAAGTCTCGAAACCG 57.281 50.000 0.00 0.00 0.00 4.44
3715 12710 1.271656 ACTACCAAGTCTCGAAACCGG 59.728 52.381 0.00 0.00 0.00 5.28
3716 12711 1.271656 CTACCAAGTCTCGAAACCGGT 59.728 52.381 0.00 0.00 32.06 5.28
3717 12712 0.033090 ACCAAGTCTCGAAACCGGTC 59.967 55.000 8.04 0.00 0.00 4.79
3718 12713 1.007336 CCAAGTCTCGAAACCGGTCG 61.007 60.000 8.04 8.80 42.48 4.79
3719 12714 1.372623 AAGTCTCGAAACCGGTCGC 60.373 57.895 8.04 1.23 40.88 5.19
3720 12715 1.803366 AAGTCTCGAAACCGGTCGCT 61.803 55.000 8.04 0.00 40.88 4.93
3721 12716 1.372623 GTCTCGAAACCGGTCGCTT 60.373 57.895 8.04 0.00 40.88 4.68
3722 12717 1.080974 TCTCGAAACCGGTCGCTTC 60.081 57.895 8.04 7.60 40.88 3.86
3723 12718 1.372499 CTCGAAACCGGTCGCTTCA 60.372 57.895 8.04 0.00 40.88 3.02
3724 12719 1.615107 CTCGAAACCGGTCGCTTCAC 61.615 60.000 8.04 0.00 40.88 3.18
3725 12720 2.664436 CGAAACCGGTCGCTTCACC 61.664 63.158 8.04 0.00 33.66 4.02
3726 12721 2.281276 AAACCGGTCGCTTCACCC 60.281 61.111 8.04 0.00 31.99 4.61
3727 12722 4.675029 AACCGGTCGCTTCACCCG 62.675 66.667 8.04 0.00 41.37 5.28
3734 12729 3.554692 CGCTTCACCCGCGCTAAG 61.555 66.667 5.56 1.93 44.33 2.18
3735 12730 3.865830 GCTTCACCCGCGCTAAGC 61.866 66.667 5.56 14.20 43.95 3.09
3747 12742 2.894307 CGCTAAGCACCAAACTAACC 57.106 50.000 0.00 0.00 0.00 2.85
3748 12743 2.147958 CGCTAAGCACCAAACTAACCA 58.852 47.619 0.00 0.00 0.00 3.67
3749 12744 2.159627 CGCTAAGCACCAAACTAACCAG 59.840 50.000 0.00 0.00 0.00 4.00
3750 12745 2.095212 GCTAAGCACCAAACTAACCAGC 60.095 50.000 0.00 0.00 0.00 4.85
3751 12746 1.328279 AAGCACCAAACTAACCAGCC 58.672 50.000 0.00 0.00 0.00 4.85
3752 12747 0.184933 AGCACCAAACTAACCAGCCA 59.815 50.000 0.00 0.00 0.00 4.75
3753 12748 0.598065 GCACCAAACTAACCAGCCAG 59.402 55.000 0.00 0.00 0.00 4.85
3754 12749 1.981256 CACCAAACTAACCAGCCAGT 58.019 50.000 0.00 0.00 0.00 4.00
3755 12750 1.880027 CACCAAACTAACCAGCCAGTC 59.120 52.381 0.00 0.00 0.00 3.51
3756 12751 1.202891 ACCAAACTAACCAGCCAGTCC 60.203 52.381 0.00 0.00 0.00 3.85
3757 12752 1.534729 CAAACTAACCAGCCAGTCCC 58.465 55.000 0.00 0.00 0.00 4.46
3758 12753 1.145571 AAACTAACCAGCCAGTCCCA 58.854 50.000 0.00 0.00 0.00 4.37
3759 12754 0.400594 AACTAACCAGCCAGTCCCAC 59.599 55.000 0.00 0.00 0.00 4.61
3760 12755 1.079127 CTAACCAGCCAGTCCCACG 60.079 63.158 0.00 0.00 0.00 4.94
3761 12756 1.827399 CTAACCAGCCAGTCCCACGT 61.827 60.000 0.00 0.00 0.00 4.49
3762 12757 1.412453 TAACCAGCCAGTCCCACGTT 61.412 55.000 0.00 0.00 0.00 3.99
3763 12758 2.113139 CCAGCCAGTCCCACGTTT 59.887 61.111 0.00 0.00 0.00 3.60
3764 12759 1.966451 CCAGCCAGTCCCACGTTTC 60.966 63.158 0.00 0.00 0.00 2.78
3765 12760 1.227823 CAGCCAGTCCCACGTTTCA 60.228 57.895 0.00 0.00 0.00 2.69
3766 12761 1.071471 AGCCAGTCCCACGTTTCAG 59.929 57.895 0.00 0.00 0.00 3.02
3767 12762 1.966451 GCCAGTCCCACGTTTCAGG 60.966 63.158 0.00 0.00 0.00 3.86
3768 12763 1.966451 CCAGTCCCACGTTTCAGGC 60.966 63.158 0.00 0.00 0.00 4.85
3769 12764 2.030562 AGTCCCACGTTTCAGGCG 59.969 61.111 0.00 0.00 0.00 5.52
3770 12765 3.723348 GTCCCACGTTTCAGGCGC 61.723 66.667 0.00 0.00 0.00 6.53
3773 12768 4.025401 CCACGTTTCAGGCGCCAC 62.025 66.667 31.54 17.32 0.00 5.01
3774 12769 4.368808 CACGTTTCAGGCGCCACG 62.369 66.667 31.54 30.01 38.62 4.94
3777 12772 4.025401 GTTTCAGGCGCCACGGTG 62.025 66.667 31.54 18.66 0.00 4.94
3806 12801 3.784412 CCCGCCGCACGTTAACAG 61.784 66.667 6.39 1.29 41.42 3.16
3807 12802 4.439472 CCGCCGCACGTTAACAGC 62.439 66.667 6.39 8.10 41.42 4.40
3811 12806 4.054455 CGCACGTTAACAGCGCGT 62.054 61.111 23.55 5.94 45.14 6.01
3812 12807 2.202008 GCACGTTAACAGCGCGTC 60.202 61.111 8.43 0.00 36.67 5.19
3813 12808 2.468532 CACGTTAACAGCGCGTCC 59.531 61.111 8.43 0.00 36.67 4.79
3814 12809 3.101428 ACGTTAACAGCGCGTCCG 61.101 61.111 8.43 9.18 33.22 4.79
3842 12837 2.024871 CGGCGTCGTCAGAGGATC 59.975 66.667 0.00 0.00 34.40 3.36
3843 12838 2.761195 CGGCGTCGTCAGAGGATCA 61.761 63.158 0.00 0.00 37.82 2.92
3844 12839 1.511305 GGCGTCGTCAGAGGATCAA 59.489 57.895 0.00 0.00 37.82 2.57
3845 12840 0.802607 GGCGTCGTCAGAGGATCAAC 60.803 60.000 0.00 0.00 37.82 3.18
3846 12841 0.109272 GCGTCGTCAGAGGATCAACA 60.109 55.000 0.00 0.00 37.82 3.33
3847 12842 1.469940 GCGTCGTCAGAGGATCAACAT 60.470 52.381 0.00 0.00 37.82 2.71
3848 12843 2.455032 CGTCGTCAGAGGATCAACATC 58.545 52.381 0.00 0.00 37.82 3.06
3849 12844 2.159379 CGTCGTCAGAGGATCAACATCA 60.159 50.000 0.00 0.00 37.82 3.07
3850 12845 3.673323 CGTCGTCAGAGGATCAACATCAA 60.673 47.826 0.00 0.00 37.82 2.57
3851 12846 4.245660 GTCGTCAGAGGATCAACATCAAA 58.754 43.478 0.00 0.00 37.82 2.69
3852 12847 4.872691 GTCGTCAGAGGATCAACATCAAAT 59.127 41.667 0.00 0.00 37.82 2.32
3853 12848 4.872124 TCGTCAGAGGATCAACATCAAATG 59.128 41.667 0.00 0.00 37.82 2.32
3854 12849 4.872124 CGTCAGAGGATCAACATCAAATGA 59.128 41.667 0.00 0.00 37.82 2.57
3855 12850 5.220548 CGTCAGAGGATCAACATCAAATGAC 60.221 44.000 0.00 0.00 37.82 3.06
3856 12851 4.872124 TCAGAGGATCAACATCAAATGACG 59.128 41.667 0.00 0.00 37.82 4.35
3857 12852 4.034858 CAGAGGATCAACATCAAATGACGG 59.965 45.833 0.00 0.00 37.82 4.79
3858 12853 3.282021 AGGATCAACATCAAATGACGGG 58.718 45.455 0.00 0.00 0.00 5.28
3859 12854 3.016736 GGATCAACATCAAATGACGGGT 58.983 45.455 0.00 0.00 0.00 5.28
3860 12855 3.065371 GGATCAACATCAAATGACGGGTC 59.935 47.826 0.00 0.00 0.00 4.46
3861 12856 2.432444 TCAACATCAAATGACGGGTCC 58.568 47.619 0.00 0.00 0.00 4.46
3862 12857 1.472480 CAACATCAAATGACGGGTCCC 59.528 52.381 0.00 0.00 0.00 4.46
3863 12858 0.695924 ACATCAAATGACGGGTCCCA 59.304 50.000 9.12 0.00 0.00 4.37
3864 12859 1.094785 CATCAAATGACGGGTCCCAC 58.905 55.000 9.12 1.69 0.00 4.61
3865 12860 0.695924 ATCAAATGACGGGTCCCACA 59.304 50.000 9.12 7.99 0.00 4.17
3866 12861 0.695924 TCAAATGACGGGTCCCACAT 59.304 50.000 9.12 10.07 0.00 3.21
3867 12862 1.074727 TCAAATGACGGGTCCCACATT 59.925 47.619 18.92 18.92 33.90 2.71
3868 12863 1.892474 CAAATGACGGGTCCCACATTT 59.108 47.619 25.20 25.20 39.09 2.32
3869 12864 2.298729 CAAATGACGGGTCCCACATTTT 59.701 45.455 26.95 16.51 37.72 1.82
3870 12865 1.544724 ATGACGGGTCCCACATTTTG 58.455 50.000 9.12 0.00 0.00 2.44
3871 12866 0.538516 TGACGGGTCCCACATTTTGG 60.539 55.000 9.12 0.00 46.47 3.28
3872 12867 0.538746 GACGGGTCCCACATTTTGGT 60.539 55.000 9.12 0.00 45.25 3.67
3873 12868 0.825840 ACGGGTCCCACATTTTGGTG 60.826 55.000 9.12 0.00 45.25 4.17
3874 12869 1.671166 GGGTCCCACATTTTGGTGC 59.329 57.895 1.78 0.00 45.25 5.01
3875 12870 1.118356 GGGTCCCACATTTTGGTGCA 61.118 55.000 1.78 0.00 45.25 4.57
3876 12871 0.975887 GGTCCCACATTTTGGTGCAT 59.024 50.000 0.00 0.00 45.25 3.96
3877 12872 1.347378 GGTCCCACATTTTGGTGCATT 59.653 47.619 0.00 0.00 45.25 3.56
3878 12873 2.415776 GTCCCACATTTTGGTGCATTG 58.584 47.619 0.00 0.00 45.25 2.82
3879 12874 2.036992 GTCCCACATTTTGGTGCATTGA 59.963 45.455 0.00 0.00 45.25 2.57
3880 12875 2.702478 TCCCACATTTTGGTGCATTGAA 59.298 40.909 0.00 0.00 45.25 2.69
3881 12876 2.807392 CCCACATTTTGGTGCATTGAAC 59.193 45.455 0.00 0.00 45.25 3.18
3882 12877 2.475864 CCACATTTTGGTGCATTGAACG 59.524 45.455 0.00 0.00 41.10 3.95
3883 12878 2.096811 CACATTTTGGTGCATTGAACGC 60.097 45.455 0.00 0.00 31.10 4.84
3884 12879 2.133553 CATTTTGGTGCATTGAACGCA 58.866 42.857 0.00 0.00 36.94 5.24
3885 12880 2.299993 TTTTGGTGCATTGAACGCAA 57.700 40.000 0.00 0.00 41.97 4.85
3886 12881 2.299993 TTTGGTGCATTGAACGCAAA 57.700 40.000 0.00 7.11 41.97 3.68
3887 12882 1.565305 TTGGTGCATTGAACGCAAAC 58.435 45.000 0.00 0.00 41.97 2.93
3888 12883 0.743688 TGGTGCATTGAACGCAAACT 59.256 45.000 0.00 0.00 41.97 2.66
3889 12884 1.130955 GGTGCATTGAACGCAAACTG 58.869 50.000 0.00 0.00 41.97 3.16
3890 12885 1.268999 GGTGCATTGAACGCAAACTGA 60.269 47.619 0.00 0.00 41.97 3.41
3891 12886 1.780860 GTGCATTGAACGCAAACTGAC 59.219 47.619 0.00 0.00 41.97 3.51
3892 12887 1.403323 TGCATTGAACGCAAACTGACA 59.597 42.857 0.00 0.00 37.59 3.58
3893 12888 2.159324 TGCATTGAACGCAAACTGACAA 60.159 40.909 0.00 0.00 37.59 3.18
3894 12889 2.216263 GCATTGAACGCAAACTGACAAC 59.784 45.455 0.00 0.00 37.59 3.32
3895 12890 2.553079 TTGAACGCAAACTGACAACC 57.447 45.000 0.00 0.00 0.00 3.77
3896 12891 0.375454 TGAACGCAAACTGACAACCG 59.625 50.000 0.00 0.00 0.00 4.44
3897 12892 0.928451 GAACGCAAACTGACAACCGC 60.928 55.000 0.00 0.00 0.00 5.68
3898 12893 2.051345 CGCAAACTGACAACCGCC 60.051 61.111 0.00 0.00 0.00 6.13
3899 12894 2.051345 GCAAACTGACAACCGCCG 60.051 61.111 0.00 0.00 0.00 6.46
3900 12895 2.830285 GCAAACTGACAACCGCCGT 61.830 57.895 0.00 0.00 0.00 5.68
3901 12896 1.725066 CAAACTGACAACCGCCGTT 59.275 52.632 0.00 0.00 0.00 4.44
3902 12897 0.099791 CAAACTGACAACCGCCGTTT 59.900 50.000 0.00 0.00 0.00 3.60
3903 12898 0.379316 AAACTGACAACCGCCGTTTC 59.621 50.000 0.00 0.00 0.00 2.78
3904 12899 1.441732 AACTGACAACCGCCGTTTCC 61.442 55.000 0.00 0.00 0.00 3.13
3905 12900 2.950172 CTGACAACCGCCGTTTCCG 61.950 63.158 0.00 0.00 0.00 4.30
3906 12901 2.662527 GACAACCGCCGTTTCCGA 60.663 61.111 0.00 0.00 35.63 4.55
3907 12902 2.946752 GACAACCGCCGTTTCCGAC 61.947 63.158 0.00 0.00 35.63 4.79
3908 12903 3.719144 CAACCGCCGTTTCCGACC 61.719 66.667 0.00 0.00 35.63 4.79
3914 12909 3.110178 CCGTTTCCGACCGCAGAC 61.110 66.667 0.00 0.00 35.63 3.51
3915 12910 3.467119 CGTTTCCGACCGCAGACG 61.467 66.667 0.00 0.00 35.63 4.18
3916 12911 3.774702 GTTTCCGACCGCAGACGC 61.775 66.667 0.00 0.00 38.22 5.19
3926 12921 3.529504 GCAGACGCGTCGTTAACA 58.470 55.556 31.56 0.00 41.37 2.41
3927 12922 1.127225 GCAGACGCGTCGTTAACAC 59.873 57.895 31.56 14.14 41.37 3.32
3934 12929 4.125097 GTCGTTAACACGCGGCGG 62.125 66.667 27.37 17.33 46.70 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.178912 TCGAAAACTAGTTGGGCCAG 57.821 50.000 9.34 0.00 0.00 4.85
46 47 4.913784 GGACACATAGACCCAAACCTTAA 58.086 43.478 0.00 0.00 0.00 1.85
245 250 4.943705 ACACCAACTCTTAACATAGCCATG 59.056 41.667 0.00 0.00 38.21 3.66
312 320 5.537188 TGTATGACAAATTTCCCTTGCAAC 58.463 37.500 0.00 0.00 0.00 4.17
430 458 6.365970 TCTCCCTTCCTATATGCTTCAATC 57.634 41.667 0.00 0.00 0.00 2.67
930 5723 7.389053 AGCAAAGAAGACCTAATTGTGTTAGAG 59.611 37.037 0.00 0.00 0.00 2.43
973 5778 6.257849 GTGAACAGTGTAACATCTTTGTCTCA 59.742 38.462 0.00 0.00 41.43 3.27
1055 5872 5.451798 CCATTTCCCATAACACTGCCATTAC 60.452 44.000 0.00 0.00 0.00 1.89
1069 5886 3.816842 GCATAGAGGCATCCATTTCCCAT 60.817 47.826 0.00 0.00 0.00 4.00
1221 6093 5.393461 GCATTCACTTAAATCCAAGACAGGG 60.393 44.000 0.00 0.00 0.00 4.45
1222 6094 5.393461 GGCATTCACTTAAATCCAAGACAGG 60.393 44.000 0.00 0.00 0.00 4.00
1223 6095 5.644644 GGCATTCACTTAAATCCAAGACAG 58.355 41.667 0.00 0.00 0.00 3.51
1224 6096 4.155826 CGGCATTCACTTAAATCCAAGACA 59.844 41.667 0.00 0.00 0.00 3.41
1225 6097 4.156008 ACGGCATTCACTTAAATCCAAGAC 59.844 41.667 0.00 0.00 0.00 3.01
1226 6098 4.155826 CACGGCATTCACTTAAATCCAAGA 59.844 41.667 0.00 0.00 0.00 3.02
1227 6099 4.082787 ACACGGCATTCACTTAAATCCAAG 60.083 41.667 0.00 0.00 0.00 3.61
1228 6100 3.823873 ACACGGCATTCACTTAAATCCAA 59.176 39.130 0.00 0.00 0.00 3.53
1229 6101 3.417101 ACACGGCATTCACTTAAATCCA 58.583 40.909 0.00 0.00 0.00 3.41
1230 6102 3.689649 AGACACGGCATTCACTTAAATCC 59.310 43.478 0.00 0.00 0.00 3.01
1231 6103 4.946784 AGACACGGCATTCACTTAAATC 57.053 40.909 0.00 0.00 0.00 2.17
1232 6104 4.082787 CCAAGACACGGCATTCACTTAAAT 60.083 41.667 0.00 0.00 0.00 1.40
1233 6105 3.252215 CCAAGACACGGCATTCACTTAAA 59.748 43.478 0.00 0.00 0.00 1.52
1234 6106 2.811431 CCAAGACACGGCATTCACTTAA 59.189 45.455 0.00 0.00 0.00 1.85
1235 6107 2.037902 TCCAAGACACGGCATTCACTTA 59.962 45.455 0.00 0.00 0.00 2.24
1236 6108 1.202758 TCCAAGACACGGCATTCACTT 60.203 47.619 0.00 0.00 0.00 3.16
1237 6109 0.396435 TCCAAGACACGGCATTCACT 59.604 50.000 0.00 0.00 0.00 3.41
1238 6110 1.453155 ATCCAAGACACGGCATTCAC 58.547 50.000 0.00 0.00 0.00 3.18
1239 6111 2.198827 AATCCAAGACACGGCATTCA 57.801 45.000 0.00 0.00 0.00 2.57
1240 6112 4.156008 ACTTAAATCCAAGACACGGCATTC 59.844 41.667 0.00 0.00 0.00 2.67
1241 6113 4.079253 ACTTAAATCCAAGACACGGCATT 58.921 39.130 0.00 0.00 0.00 3.56
1242 6114 3.440173 CACTTAAATCCAAGACACGGCAT 59.560 43.478 0.00 0.00 0.00 4.40
1243 6115 2.811431 CACTTAAATCCAAGACACGGCA 59.189 45.455 0.00 0.00 0.00 5.69
1244 6116 3.071479 TCACTTAAATCCAAGACACGGC 58.929 45.455 0.00 0.00 0.00 5.68
1347 6219 4.821260 TCGGTGATACAATTGGGAATCATG 59.179 41.667 17.83 14.63 31.49 3.07
1449 6324 3.488778 AGATCAAGATGCATCAGACCC 57.511 47.619 27.81 18.10 0.00 4.46
1753 8838 5.336150 TCTAGATTGGAAAGAGTGCTGAG 57.664 43.478 0.00 0.00 0.00 3.35
1789 8874 2.183679 AGAAAGCCCTCGATTCTCAGT 58.816 47.619 0.00 0.00 0.00 3.41
1842 8933 5.455326 GCCTATGAGGTCCAATGTATGAAGT 60.455 44.000 0.00 0.00 37.80 3.01
1959 9062 3.989817 GCAACAAGGCAAGATTTAACCAG 59.010 43.478 0.00 0.00 0.00 4.00
2164 9270 2.270352 TCCACAAACCTAACAGCAGG 57.730 50.000 0.00 0.00 41.87 4.85
2261 10622 4.646040 TGCTCATAAACCAATCAGGAATGG 59.354 41.667 1.83 1.83 41.22 3.16
2397 11337 3.269178 GAACTCTTCCAAGCTCTCCATG 58.731 50.000 0.00 0.00 0.00 3.66
2755 11707 2.116827 TCGAGAGAGGAGAGGTGTTC 57.883 55.000 0.00 0.00 34.84 3.18
2888 11849 4.207891 TGGCTAAGACATCTTTCCAGTC 57.792 45.455 0.00 0.00 37.40 3.51
2909 11870 8.592809 GGATGGATGTAGAGAGAACATAAAGAT 58.407 37.037 0.00 0.00 37.69 2.40
2947 11908 7.550906 AGTTGTGAGCTATTCTAACCTTCATTC 59.449 37.037 0.00 0.00 0.00 2.67
2955 11916 8.770828 TGTTTACAAGTTGTGAGCTATTCTAAC 58.229 33.333 18.90 3.02 0.00 2.34
3001 11962 7.539712 TTCTTCAGGCTATTAGTTTGATTCG 57.460 36.000 0.00 0.00 0.00 3.34
3024 11985 3.173151 GGGGGTCAAATTGAGATGGTTT 58.827 45.455 0.00 0.00 0.00 3.27
3042 12004 5.630121 TCTAACATTGCCTTACATATGGGG 58.370 41.667 7.80 7.39 0.00 4.96
3061 12023 6.676950 CAATACTTGTTGTGCAACCATCTAA 58.323 36.000 11.90 0.00 40.46 2.10
3128 12095 4.980573 TCCCTTAACTTACATGTGCAACT 58.019 39.130 9.11 0.00 38.04 3.16
3179 12146 9.246670 ACTGAAATCAAACATCTCAATGGATTA 57.753 29.630 0.00 0.00 37.19 1.75
3180 12147 8.130671 ACTGAAATCAAACATCTCAATGGATT 57.869 30.769 0.00 0.00 37.19 3.01
3181 12148 7.713734 ACTGAAATCAAACATCTCAATGGAT 57.286 32.000 0.00 0.00 37.19 3.41
3182 12149 7.449395 AGAACTGAAATCAAACATCTCAATGGA 59.551 33.333 0.00 0.00 37.19 3.41
3183 12150 7.541091 CAGAACTGAAATCAAACATCTCAATGG 59.459 37.037 0.00 0.00 37.19 3.16
3184 12151 8.294577 TCAGAACTGAAATCAAACATCTCAATG 58.705 33.333 1.79 0.00 36.53 2.82
3185 12152 8.400184 TCAGAACTGAAATCAAACATCTCAAT 57.600 30.769 1.79 0.00 36.53 2.57
3246 12213 6.429624 TCATCATATTTATCGTTGTTGCTGC 58.570 36.000 0.00 0.00 0.00 5.25
3277 12244 7.015226 TCATGTTACAATGCAAGCTACATAC 57.985 36.000 2.79 0.00 0.00 2.39
3278 12245 7.622893 TTCATGTTACAATGCAAGCTACATA 57.377 32.000 2.79 0.00 0.00 2.29
3289 12256 5.639757 TCGATGCCTTTTCATGTTACAATG 58.360 37.500 0.00 0.00 0.00 2.82
3299 12266 8.788806 TCTAGTTTTAATTTCGATGCCTTTTCA 58.211 29.630 0.00 0.00 0.00 2.69
3308 12275 8.727910 GGTTCAGGTTCTAGTTTTAATTTCGAT 58.272 33.333 0.00 0.00 0.00 3.59
3333 12300 0.036671 GGTGTAAACCGACCTCTGGG 60.037 60.000 0.00 0.00 38.88 4.45
3382 12365 4.865905 TGGCCTTTATGTGATTGTACCAT 58.134 39.130 3.32 0.00 0.00 3.55
3384 12367 4.644685 ACATGGCCTTTATGTGATTGTACC 59.355 41.667 3.32 0.00 37.38 3.34
3386 12369 6.894682 TCTACATGGCCTTTATGTGATTGTA 58.105 36.000 15.62 0.00 39.03 2.41
3388 12371 6.675026 CATCTACATGGCCTTTATGTGATTG 58.325 40.000 15.62 7.49 39.03 2.67
3389 12372 5.242393 GCATCTACATGGCCTTTATGTGATT 59.758 40.000 15.62 0.00 39.03 2.57
3390 12373 4.763793 GCATCTACATGGCCTTTATGTGAT 59.236 41.667 15.62 12.86 39.03 3.06
3391 12374 4.136796 GCATCTACATGGCCTTTATGTGA 58.863 43.478 15.62 11.48 39.03 3.58
3392 12375 3.884693 TGCATCTACATGGCCTTTATGTG 59.115 43.478 15.62 7.37 39.03 3.21
3393 12376 4.169059 TGCATCTACATGGCCTTTATGT 57.831 40.909 11.57 11.57 41.36 2.29
3394 12377 6.183360 CCATATGCATCTACATGGCCTTTATG 60.183 42.308 12.22 1.40 32.12 1.90
3395 12378 5.889853 CCATATGCATCTACATGGCCTTTAT 59.110 40.000 12.22 0.00 32.12 1.40
3397 12380 4.084287 CCATATGCATCTACATGGCCTTT 58.916 43.478 12.22 0.00 32.12 3.11
3398 12381 3.074985 ACCATATGCATCTACATGGCCTT 59.925 43.478 21.25 4.56 41.41 4.35
3399 12382 2.646297 ACCATATGCATCTACATGGCCT 59.354 45.455 21.25 5.17 41.41 5.19
3400 12383 3.077484 ACCATATGCATCTACATGGCC 57.923 47.619 21.25 0.00 41.41 5.36
3401 12384 4.578871 TGTACCATATGCATCTACATGGC 58.421 43.478 21.25 10.21 41.41 4.40
3403 12386 7.388500 TGTGATTGTACCATATGCATCTACATG 59.612 37.037 0.19 0.63 0.00 3.21
3404 12387 7.452562 TGTGATTGTACCATATGCATCTACAT 58.547 34.615 0.19 0.00 0.00 2.29
3405 12388 6.825610 TGTGATTGTACCATATGCATCTACA 58.174 36.000 0.19 2.46 0.00 2.74
3406 12389 7.912056 ATGTGATTGTACCATATGCATCTAC 57.088 36.000 0.19 0.00 0.00 2.59
3428 12417 3.853831 TGTGCTCACATGGCTTTTATG 57.146 42.857 0.00 0.00 36.21 1.90
3487 12477 0.657840 GTTTCAGCTGACGCACTGTT 59.342 50.000 18.03 0.00 39.10 3.16
3490 12480 0.882042 CCAGTTTCAGCTGACGCACT 60.882 55.000 18.03 15.62 38.70 4.40
3497 12487 3.902881 AGGTATCTCCAGTTTCAGCTG 57.097 47.619 7.63 7.63 39.02 4.24
3498 12488 4.353777 TGTAGGTATCTCCAGTTTCAGCT 58.646 43.478 0.00 0.00 39.02 4.24
3530 12521 8.283291 GGTGCTAACTACAATGTATTTATCAGC 58.717 37.037 15.41 15.41 0.00 4.26
3532 12523 9.899661 AAGGTGCTAACTACAATGTATTTATCA 57.100 29.630 4.11 3.98 0.00 2.15
3541 12532 5.643348 TGATGTGAAGGTGCTAACTACAATG 59.357 40.000 0.00 0.00 0.00 2.82
3550 12545 4.943705 GGAATTTCTGATGTGAAGGTGCTA 59.056 41.667 0.00 0.00 0.00 3.49
3554 12549 6.656693 CACTTAGGAATTTCTGATGTGAAGGT 59.343 38.462 0.00 0.00 0.00 3.50
3592 12587 9.320352 GTGAAATGTGGTAGTTTTTGGTTAAAT 57.680 29.630 0.00 0.00 0.00 1.40
3593 12588 7.488471 CGTGAAATGTGGTAGTTTTTGGTTAAA 59.512 33.333 0.00 0.00 0.00 1.52
3594 12589 6.973474 CGTGAAATGTGGTAGTTTTTGGTTAA 59.027 34.615 0.00 0.00 0.00 2.01
3595 12590 6.318144 TCGTGAAATGTGGTAGTTTTTGGTTA 59.682 34.615 0.00 0.00 0.00 2.85
3596 12591 5.125739 TCGTGAAATGTGGTAGTTTTTGGTT 59.874 36.000 0.00 0.00 0.00 3.67
3597 12592 4.641094 TCGTGAAATGTGGTAGTTTTTGGT 59.359 37.500 0.00 0.00 0.00 3.67
3598 12593 5.176407 TCGTGAAATGTGGTAGTTTTTGG 57.824 39.130 0.00 0.00 0.00 3.28
3599 12594 7.387945 GTTTTCGTGAAATGTGGTAGTTTTTG 58.612 34.615 0.00 0.00 0.00 2.44
3600 12595 6.251801 CGTTTTCGTGAAATGTGGTAGTTTTT 59.748 34.615 0.00 0.00 38.65 1.94
3601 12596 5.740099 CGTTTTCGTGAAATGTGGTAGTTTT 59.260 36.000 0.00 0.00 38.65 2.43
3602 12597 5.267776 CGTTTTCGTGAAATGTGGTAGTTT 58.732 37.500 0.00 0.00 38.65 2.66
3603 12598 4.839796 CGTTTTCGTGAAATGTGGTAGTT 58.160 39.130 0.00 0.00 38.65 2.24
3604 12599 4.461992 CGTTTTCGTGAAATGTGGTAGT 57.538 40.909 0.00 0.00 38.65 2.73
3631 12626 7.221259 GCACAAAATCGTAAAGTGGTAGTTTTT 59.779 33.333 0.00 0.00 0.00 1.94
3632 12627 6.693978 GCACAAAATCGTAAAGTGGTAGTTTT 59.306 34.615 0.00 0.00 0.00 2.43
3633 12628 6.203647 GCACAAAATCGTAAAGTGGTAGTTT 58.796 36.000 0.00 0.00 0.00 2.66
3634 12629 5.559417 CGCACAAAATCGTAAAGTGGTAGTT 60.559 40.000 0.00 0.00 0.00 2.24
3635 12630 4.084223 CGCACAAAATCGTAAAGTGGTAGT 60.084 41.667 0.00 0.00 0.00 2.73
3636 12631 4.391358 CGCACAAAATCGTAAAGTGGTAG 58.609 43.478 0.00 0.00 0.00 3.18
3637 12632 3.186817 CCGCACAAAATCGTAAAGTGGTA 59.813 43.478 0.00 0.00 0.00 3.25
3638 12633 2.031508 CCGCACAAAATCGTAAAGTGGT 60.032 45.455 0.00 0.00 0.00 4.16
3639 12634 2.224549 TCCGCACAAAATCGTAAAGTGG 59.775 45.455 0.00 0.00 0.00 4.00
3640 12635 3.529634 TCCGCACAAAATCGTAAAGTG 57.470 42.857 0.00 0.00 0.00 3.16
3641 12636 4.555348 TTTCCGCACAAAATCGTAAAGT 57.445 36.364 0.00 0.00 0.00 2.66
3642 12637 4.973663 AGTTTTCCGCACAAAATCGTAAAG 59.026 37.500 0.00 0.00 0.00 1.85
3643 12638 4.922719 AGTTTTCCGCACAAAATCGTAAA 58.077 34.783 0.00 0.00 0.00 2.01
3644 12639 4.555348 AGTTTTCCGCACAAAATCGTAA 57.445 36.364 0.00 0.00 0.00 3.18
3645 12640 4.083908 GGTAGTTTTCCGCACAAAATCGTA 60.084 41.667 0.00 0.00 0.00 3.43
3646 12641 3.304190 GGTAGTTTTCCGCACAAAATCGT 60.304 43.478 0.00 0.00 0.00 3.73
3647 12642 3.231160 GGTAGTTTTCCGCACAAAATCG 58.769 45.455 0.00 0.00 0.00 3.34
3648 12643 3.978855 GTGGTAGTTTTCCGCACAAAATC 59.021 43.478 0.00 0.00 35.75 2.17
3649 12644 3.634910 AGTGGTAGTTTTCCGCACAAAAT 59.365 39.130 0.00 0.00 37.86 1.82
3650 12645 3.018149 AGTGGTAGTTTTCCGCACAAAA 58.982 40.909 0.00 0.00 37.86 2.44
3651 12646 2.645802 AGTGGTAGTTTTCCGCACAAA 58.354 42.857 0.00 0.00 37.86 2.83
3652 12647 2.335316 AGTGGTAGTTTTCCGCACAA 57.665 45.000 0.00 0.00 37.86 3.33
3653 12648 2.335316 AAGTGGTAGTTTTCCGCACA 57.665 45.000 0.00 0.00 37.86 4.57
3654 12649 3.181494 ACAAAAGTGGTAGTTTTCCGCAC 60.181 43.478 0.00 0.00 37.86 5.34
3655 12650 3.018149 ACAAAAGTGGTAGTTTTCCGCA 58.982 40.909 0.00 0.00 37.86 5.69
3656 12651 3.549423 GGACAAAAGTGGTAGTTTTCCGC 60.549 47.826 0.00 0.00 28.88 5.54
3657 12652 3.881089 AGGACAAAAGTGGTAGTTTTCCG 59.119 43.478 0.00 0.00 28.88 4.30
3658 12653 6.060136 ACTAGGACAAAAGTGGTAGTTTTCC 58.940 40.000 0.00 0.00 28.88 3.13
3659 12654 6.204301 GGACTAGGACAAAAGTGGTAGTTTTC 59.796 42.308 0.00 0.00 28.88 2.29
3660 12655 6.060136 GGACTAGGACAAAAGTGGTAGTTTT 58.940 40.000 0.00 0.00 31.34 2.43
3661 12656 5.618236 GGACTAGGACAAAAGTGGTAGTTT 58.382 41.667 0.00 0.00 0.00 2.66
3662 12657 4.262335 CGGACTAGGACAAAAGTGGTAGTT 60.262 45.833 0.00 0.00 0.00 2.24
3663 12658 3.257624 CGGACTAGGACAAAAGTGGTAGT 59.742 47.826 0.00 0.00 0.00 2.73
3664 12659 3.257624 ACGGACTAGGACAAAAGTGGTAG 59.742 47.826 0.00 0.00 0.00 3.18
3665 12660 3.006110 CACGGACTAGGACAAAAGTGGTA 59.994 47.826 0.00 0.00 0.00 3.25
3666 12661 2.044758 ACGGACTAGGACAAAAGTGGT 58.955 47.619 0.00 0.00 0.00 4.16
3667 12662 2.413837 CACGGACTAGGACAAAAGTGG 58.586 52.381 0.00 0.00 0.00 4.00
3668 12663 2.413837 CCACGGACTAGGACAAAAGTG 58.586 52.381 0.00 0.00 0.00 3.16
3669 12664 1.270678 GCCACGGACTAGGACAAAAGT 60.271 52.381 0.00 0.00 0.00 2.66
3670 12665 1.270625 TGCCACGGACTAGGACAAAAG 60.271 52.381 0.00 0.00 0.00 2.27
3671 12666 0.759959 TGCCACGGACTAGGACAAAA 59.240 50.000 0.00 0.00 0.00 2.44
3672 12667 0.759959 TTGCCACGGACTAGGACAAA 59.240 50.000 0.00 0.00 0.00 2.83
3673 12668 0.759959 TTTGCCACGGACTAGGACAA 59.240 50.000 0.00 0.00 0.00 3.18
3674 12669 0.759959 TTTTGCCACGGACTAGGACA 59.240 50.000 0.00 0.00 0.00 4.02
3675 12670 1.886886 TTTTTGCCACGGACTAGGAC 58.113 50.000 0.00 0.00 0.00 3.85
3691 12686 4.271776 CGGTTTCGAGACTTGGTAGTTTTT 59.728 41.667 6.02 0.00 39.00 1.94
3692 12687 3.805971 CGGTTTCGAGACTTGGTAGTTTT 59.194 43.478 6.02 0.00 39.00 2.43
3693 12688 3.387397 CGGTTTCGAGACTTGGTAGTTT 58.613 45.455 6.02 0.00 39.00 2.66
3694 12689 2.288640 CCGGTTTCGAGACTTGGTAGTT 60.289 50.000 6.02 0.00 39.00 2.24
3695 12690 1.271656 CCGGTTTCGAGACTTGGTAGT 59.728 52.381 6.02 0.00 39.00 2.73
3696 12691 1.271656 ACCGGTTTCGAGACTTGGTAG 59.728 52.381 17.58 0.75 39.00 3.18
3697 12692 1.270550 GACCGGTTTCGAGACTTGGTA 59.729 52.381 9.42 0.00 39.00 3.25
3698 12693 0.033090 GACCGGTTTCGAGACTTGGT 59.967 55.000 18.61 18.61 39.00 3.67
3699 12694 1.007336 CGACCGGTTTCGAGACTTGG 61.007 60.000 9.42 13.67 41.78 3.61
3700 12695 1.615107 GCGACCGGTTTCGAGACTTG 61.615 60.000 18.90 0.42 41.78 3.16
3701 12696 1.372623 GCGACCGGTTTCGAGACTT 60.373 57.895 18.90 0.00 41.78 3.01
3702 12697 1.803366 AAGCGACCGGTTTCGAGACT 61.803 55.000 18.90 4.42 41.78 3.24
3703 12698 1.342796 GAAGCGACCGGTTTCGAGAC 61.343 60.000 18.90 0.00 41.78 3.36
3704 12699 1.080974 GAAGCGACCGGTTTCGAGA 60.081 57.895 18.90 0.00 41.78 4.04
3705 12700 1.372499 TGAAGCGACCGGTTTCGAG 60.372 57.895 18.90 5.38 41.78 4.04
3706 12701 1.662446 GTGAAGCGACCGGTTTCGA 60.662 57.895 18.90 3.29 41.78 3.71
3707 12702 2.664436 GGTGAAGCGACCGGTTTCG 61.664 63.158 9.42 10.44 38.57 3.46
3708 12703 2.322830 GGGTGAAGCGACCGGTTTC 61.323 63.158 9.42 9.82 36.80 2.78
3709 12704 2.281276 GGGTGAAGCGACCGGTTT 60.281 61.111 9.42 0.00 36.80 3.27
3710 12705 4.675029 CGGGTGAAGCGACCGGTT 62.675 66.667 9.42 6.56 43.69 4.44
3718 12713 3.865830 GCTTAGCGCGGGTGAAGC 61.866 66.667 19.24 19.24 37.72 3.86
3719 12714 2.434185 TGCTTAGCGCGGGTGAAG 60.434 61.111 8.83 6.26 43.27 3.02
3720 12715 2.740826 GTGCTTAGCGCGGGTGAA 60.741 61.111 8.83 0.00 43.27 3.18
3721 12716 4.752879 GGTGCTTAGCGCGGGTGA 62.753 66.667 8.83 0.00 43.27 4.02
3723 12718 3.835790 TTTGGTGCTTAGCGCGGGT 62.836 57.895 8.83 0.00 43.27 5.28
3724 12719 3.053291 TTTGGTGCTTAGCGCGGG 61.053 61.111 8.83 0.00 43.27 6.13
3725 12720 1.017177 TAGTTTGGTGCTTAGCGCGG 61.017 55.000 8.83 0.00 43.27 6.46
3726 12721 0.793861 TTAGTTTGGTGCTTAGCGCG 59.206 50.000 11.80 0.00 43.27 6.86
3727 12722 1.135774 GGTTAGTTTGGTGCTTAGCGC 60.136 52.381 9.54 9.54 38.45 5.92
3728 12723 2.147958 TGGTTAGTTTGGTGCTTAGCG 58.852 47.619 0.00 0.00 0.00 4.26
3729 12724 2.095212 GCTGGTTAGTTTGGTGCTTAGC 60.095 50.000 0.00 0.00 0.00 3.09
3730 12725 2.488153 GGCTGGTTAGTTTGGTGCTTAG 59.512 50.000 0.00 0.00 0.00 2.18
3731 12726 2.158593 TGGCTGGTTAGTTTGGTGCTTA 60.159 45.455 0.00 0.00 0.00 3.09
3732 12727 1.328279 GGCTGGTTAGTTTGGTGCTT 58.672 50.000 0.00 0.00 0.00 3.91
3733 12728 0.184933 TGGCTGGTTAGTTTGGTGCT 59.815 50.000 0.00 0.00 0.00 4.40
3734 12729 0.598065 CTGGCTGGTTAGTTTGGTGC 59.402 55.000 0.00 0.00 0.00 5.01
3735 12730 1.880027 GACTGGCTGGTTAGTTTGGTG 59.120 52.381 0.00 0.00 0.00 4.17
3736 12731 1.202891 GGACTGGCTGGTTAGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
3737 12732 1.534729 GGACTGGCTGGTTAGTTTGG 58.465 55.000 0.00 0.00 0.00 3.28
3738 12733 1.202879 TGGGACTGGCTGGTTAGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
3739 12734 1.145571 TGGGACTGGCTGGTTAGTTT 58.854 50.000 0.00 0.00 0.00 2.66
3740 12735 0.400594 GTGGGACTGGCTGGTTAGTT 59.599 55.000 0.00 0.00 0.00 2.24
3741 12736 1.827399 CGTGGGACTGGCTGGTTAGT 61.827 60.000 0.00 0.00 0.00 2.24
3742 12737 1.079127 CGTGGGACTGGCTGGTTAG 60.079 63.158 0.00 0.00 0.00 2.34
3743 12738 1.412453 AACGTGGGACTGGCTGGTTA 61.412 55.000 0.00 0.00 0.00 2.85
3744 12739 2.279037 AAACGTGGGACTGGCTGGTT 62.279 55.000 0.00 0.00 0.00 3.67
3745 12740 2.676163 GAAACGTGGGACTGGCTGGT 62.676 60.000 0.00 0.00 0.00 4.00
3746 12741 1.966451 GAAACGTGGGACTGGCTGG 60.966 63.158 0.00 0.00 0.00 4.85
3747 12742 1.227823 TGAAACGTGGGACTGGCTG 60.228 57.895 0.00 0.00 0.00 4.85
3748 12743 1.071471 CTGAAACGTGGGACTGGCT 59.929 57.895 0.00 0.00 0.00 4.75
3749 12744 1.966451 CCTGAAACGTGGGACTGGC 60.966 63.158 0.00 0.00 0.00 4.85
3750 12745 1.966451 GCCTGAAACGTGGGACTGG 60.966 63.158 0.00 0.00 0.00 4.00
3751 12746 2.317609 CGCCTGAAACGTGGGACTG 61.318 63.158 0.00 0.00 0.00 3.51
3752 12747 2.030562 CGCCTGAAACGTGGGACT 59.969 61.111 0.00 0.00 0.00 3.85
3753 12748 3.723348 GCGCCTGAAACGTGGGAC 61.723 66.667 0.00 0.00 0.00 4.46
3756 12751 4.025401 GTGGCGCCTGAAACGTGG 62.025 66.667 29.70 0.00 0.00 4.94
3757 12752 4.368808 CGTGGCGCCTGAAACGTG 62.369 66.667 29.70 1.36 0.00 4.49
3760 12755 4.025401 CACCGTGGCGCCTGAAAC 62.025 66.667 29.70 16.58 0.00 2.78
3789 12784 3.784412 CTGTTAACGTGCGGCGGG 61.784 66.667 9.78 0.00 46.52 6.13
3790 12785 4.439472 GCTGTTAACGTGCGGCGG 62.439 66.667 9.78 0.00 46.52 6.13
3795 12790 2.202008 GACGCGCTGTTAACGTGC 60.202 61.111 19.25 19.25 44.52 5.34
3796 12791 2.468532 GGACGCGCTGTTAACGTG 59.531 61.111 5.73 4.12 46.03 4.49
3797 12792 3.101428 CGGACGCGCTGTTAACGT 61.101 61.111 5.73 0.00 43.83 3.99
3798 12793 4.479121 GCGGACGCGCTGTTAACG 62.479 66.667 5.73 12.07 0.00 3.18
3825 12820 2.024871 GATCCTCTGACGACGCCG 59.975 66.667 0.00 0.00 42.50 6.46
3826 12821 0.802607 GTTGATCCTCTGACGACGCC 60.803 60.000 0.00 0.00 0.00 5.68
3827 12822 0.109272 TGTTGATCCTCTGACGACGC 60.109 55.000 0.00 0.00 0.00 5.19
3828 12823 2.159379 TGATGTTGATCCTCTGACGACG 60.159 50.000 0.00 0.00 0.00 5.12
3829 12824 3.510388 TGATGTTGATCCTCTGACGAC 57.490 47.619 0.00 0.00 0.00 4.34
3830 12825 4.535526 TTTGATGTTGATCCTCTGACGA 57.464 40.909 0.00 0.00 0.00 4.20
3831 12826 4.872124 TCATTTGATGTTGATCCTCTGACG 59.128 41.667 0.00 0.00 0.00 4.35
3832 12827 5.220548 CGTCATTTGATGTTGATCCTCTGAC 60.221 44.000 0.00 0.00 31.76 3.51
3833 12828 4.872124 CGTCATTTGATGTTGATCCTCTGA 59.128 41.667 0.00 0.00 0.00 3.27
3834 12829 4.034858 CCGTCATTTGATGTTGATCCTCTG 59.965 45.833 0.00 0.00 0.00 3.35
3835 12830 4.194640 CCGTCATTTGATGTTGATCCTCT 58.805 43.478 0.00 0.00 0.00 3.69
3836 12831 3.313526 CCCGTCATTTGATGTTGATCCTC 59.686 47.826 0.00 0.00 0.00 3.71
3837 12832 3.282021 CCCGTCATTTGATGTTGATCCT 58.718 45.455 0.00 0.00 0.00 3.24
3838 12833 3.016736 ACCCGTCATTTGATGTTGATCC 58.983 45.455 0.00 0.00 0.00 3.36
3839 12834 3.065371 GGACCCGTCATTTGATGTTGATC 59.935 47.826 0.00 0.00 0.00 2.92
3840 12835 3.016736 GGACCCGTCATTTGATGTTGAT 58.983 45.455 0.00 0.00 0.00 2.57
3841 12836 2.432444 GGACCCGTCATTTGATGTTGA 58.568 47.619 0.00 0.00 0.00 3.18
3842 12837 1.472480 GGGACCCGTCATTTGATGTTG 59.528 52.381 0.00 0.00 0.00 3.33
3843 12838 1.074727 TGGGACCCGTCATTTGATGTT 59.925 47.619 5.91 0.00 0.00 2.71
3844 12839 0.695924 TGGGACCCGTCATTTGATGT 59.304 50.000 5.91 0.00 0.00 3.06
3845 12840 1.094785 GTGGGACCCGTCATTTGATG 58.905 55.000 5.91 0.00 0.00 3.07
3846 12841 0.695924 TGTGGGACCCGTCATTTGAT 59.304 50.000 5.91 0.00 0.00 2.57
3847 12842 0.695924 ATGTGGGACCCGTCATTTGA 59.304 50.000 13.28 0.00 0.00 2.69
3848 12843 1.544724 AATGTGGGACCCGTCATTTG 58.455 50.000 21.01 0.00 30.92 2.32
3849 12844 2.298729 CAAAATGTGGGACCCGTCATTT 59.701 45.455 26.95 26.95 39.91 2.32
3850 12845 1.892474 CAAAATGTGGGACCCGTCATT 59.108 47.619 21.01 21.01 34.26 2.57
3851 12846 1.544724 CAAAATGTGGGACCCGTCAT 58.455 50.000 13.28 13.28 0.00 3.06
3852 12847 0.538516 CCAAAATGTGGGACCCGTCA 60.539 55.000 5.91 8.37 44.64 4.35
3853 12848 2.263153 CCAAAATGTGGGACCCGTC 58.737 57.895 5.91 2.09 44.64 4.79
3854 12849 4.511838 CCAAAATGTGGGACCCGT 57.488 55.556 5.91 0.00 44.64 5.28
3862 12857 2.096811 GCGTTCAATGCACCAAAATGTG 60.097 45.455 0.00 0.00 39.29 3.21
3863 12858 2.134346 GCGTTCAATGCACCAAAATGT 58.866 42.857 0.00 0.00 0.00 2.71
3864 12859 2.133553 TGCGTTCAATGCACCAAAATG 58.866 42.857 0.00 0.00 34.76 2.32
3865 12860 2.522836 TGCGTTCAATGCACCAAAAT 57.477 40.000 0.00 0.00 34.76 1.82
3866 12861 2.299993 TTGCGTTCAATGCACCAAAA 57.700 40.000 2.97 0.00 40.28 2.44
3867 12862 1.929836 GTTTGCGTTCAATGCACCAAA 59.070 42.857 2.97 0.00 40.28 3.28
3868 12863 1.135915 AGTTTGCGTTCAATGCACCAA 59.864 42.857 2.97 0.00 40.28 3.67
3869 12864 0.743688 AGTTTGCGTTCAATGCACCA 59.256 45.000 2.97 0.00 40.28 4.17
3870 12865 1.130955 CAGTTTGCGTTCAATGCACC 58.869 50.000 2.97 0.00 40.28 5.01
3871 12866 1.780860 GTCAGTTTGCGTTCAATGCAC 59.219 47.619 2.97 0.00 40.28 4.57
3872 12867 1.403323 TGTCAGTTTGCGTTCAATGCA 59.597 42.857 0.00 0.00 38.54 3.96
3873 12868 2.118228 TGTCAGTTTGCGTTCAATGC 57.882 45.000 0.00 0.00 31.33 3.56
3874 12869 2.788786 GGTTGTCAGTTTGCGTTCAATG 59.211 45.455 0.00 0.00 31.33 2.82
3875 12870 2.540769 CGGTTGTCAGTTTGCGTTCAAT 60.541 45.455 0.00 0.00 31.33 2.57
3876 12871 1.202087 CGGTTGTCAGTTTGCGTTCAA 60.202 47.619 0.00 0.00 0.00 2.69
3877 12872 0.375454 CGGTTGTCAGTTTGCGTTCA 59.625 50.000 0.00 0.00 0.00 3.18
3878 12873 0.928451 GCGGTTGTCAGTTTGCGTTC 60.928 55.000 0.00 0.00 0.00 3.95
3879 12874 1.063488 GCGGTTGTCAGTTTGCGTT 59.937 52.632 0.00 0.00 0.00 4.84
3880 12875 2.713154 GCGGTTGTCAGTTTGCGT 59.287 55.556 0.00 0.00 0.00 5.24
3881 12876 2.051345 GGCGGTTGTCAGTTTGCG 60.051 61.111 0.00 0.00 0.00 4.85
3882 12877 2.051345 CGGCGGTTGTCAGTTTGC 60.051 61.111 0.00 0.00 0.00 3.68
3883 12878 0.099791 AAACGGCGGTTGTCAGTTTG 59.900 50.000 10.49 0.00 36.25 2.93
3884 12879 0.379316 GAAACGGCGGTTGTCAGTTT 59.621 50.000 18.02 0.19 36.25 2.66
3885 12880 1.441732 GGAAACGGCGGTTGTCAGTT 61.442 55.000 18.02 0.00 36.25 3.16
3886 12881 1.890510 GGAAACGGCGGTTGTCAGT 60.891 57.895 18.02 0.00 36.25 3.41
3887 12882 2.943653 GGAAACGGCGGTTGTCAG 59.056 61.111 18.02 0.00 36.25 3.51
3899 12894 3.774702 GCGTCTGCGGTCGGAAAC 61.775 66.667 13.92 0.00 38.78 2.78
3909 12904 1.127225 GTGTTAACGACGCGTCTGC 59.873 57.895 33.94 19.54 39.99 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.