Multiple sequence alignment - TraesCS4A01G388900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G388900 chr4A 100.000 3634 0 0 1 3634 666541410 666537777 0.000000e+00 6711.0
1 TraesCS4A01G388900 chr4A 84.334 2081 202 69 778 2794 666811632 666813652 0.000000e+00 1923.0
2 TraesCS4A01G388900 chr4A 85.884 1516 127 45 771 2206 666484803 666483295 0.000000e+00 1533.0
3 TraesCS4A01G388900 chr4A 85.333 675 76 18 2216 2875 666483048 666482382 0.000000e+00 676.0
4 TraesCS4A01G388900 chr4A 77.640 805 115 38 2150 2925 666927087 666927855 2.590000e-116 429.0
5 TraesCS4A01G388900 chr4A 86.755 302 30 7 1628 1923 666926349 666926646 9.730000e-86 327.0
6 TraesCS4A01G388900 chr4A 83.936 249 30 7 3361 3600 666288716 666288469 2.820000e-56 230.0
7 TraesCS4A01G388900 chr4A 83.936 249 30 7 3361 3600 666292046 666291799 2.820000e-56 230.0
8 TraesCS4A01G388900 chr4A 83.936 249 30 7 3361 3600 666356034 666355787 2.820000e-56 230.0
9 TraesCS4A01G388900 chr4A 84.848 165 13 4 3209 3363 666453004 666452842 4.860000e-34 156.0
10 TraesCS4A01G388900 chr4A 79.638 221 26 9 2943 3157 666266522 666266315 1.360000e-29 141.0
11 TraesCS4A01G388900 chr7D 87.593 1209 91 33 763 1943 52293058 52294235 0.000000e+00 1347.0
12 TraesCS4A01G388900 chr7D 86.445 1173 94 42 781 1921 51954267 51953128 0.000000e+00 1225.0
13 TraesCS4A01G388900 chr7D 87.831 830 70 16 778 1596 52035027 52035836 0.000000e+00 944.0
14 TraesCS4A01G388900 chr7D 87.364 736 67 14 839 1565 52232701 52233419 0.000000e+00 821.0
15 TraesCS4A01G388900 chr7D 85.252 773 80 22 1690 2434 52233619 52234385 0.000000e+00 765.0
16 TraesCS4A01G388900 chr7D 83.128 812 92 26 1923 2701 52294609 52295408 0.000000e+00 699.0
17 TraesCS4A01G388900 chr7D 85.063 636 57 20 2202 2815 51952806 51952187 6.670000e-172 614.0
18 TraesCS4A01G388900 chr7D 84.983 606 63 15 778 1362 52266367 52266965 1.120000e-164 590.0
19 TraesCS4A01G388900 chr7D 89.647 425 26 5 3209 3618 51951796 51951375 3.210000e-145 525.0
20 TraesCS4A01G388900 chr7D 91.967 361 23 4 2849 3207 51952189 51951833 5.420000e-138 501.0
21 TraesCS4A01G388900 chr7D 81.481 513 73 15 2425 2925 52235764 52236266 5.650000e-108 401.0
22 TraesCS4A01G388900 chr7D 82.500 440 41 13 1915 2341 52267947 52268363 1.610000e-93 353.0
23 TraesCS4A01G388900 chr7D 80.499 441 53 19 1913 2344 52036368 52036784 1.270000e-79 307.0
24 TraesCS4A01G388900 chr7D 87.383 214 25 1 1904 2115 51953113 51952900 1.010000e-60 244.0
25 TraesCS4A01G388900 chr7D 85.714 175 21 3 1699 1871 596124225 596124397 8.020000e-42 182.0
26 TraesCS4A01G388900 chr7D 90.909 88 6 2 2243 2329 596124522 596124608 2.290000e-22 117.0
27 TraesCS4A01G388900 chr7D 92.105 76 5 1 2249 2323 596304882 596304957 4.960000e-19 106.0
28 TraesCS4A01G388900 chr7D 89.706 68 7 0 2249 2316 596110756 596110689 1.800000e-13 87.9
29 TraesCS4A01G388900 chr7A 85.606 1188 90 46 777 1921 54758671 54757522 0.000000e+00 1171.0
30 TraesCS4A01G388900 chr7A 90.283 813 46 22 781 1578 54773007 54772213 0.000000e+00 1033.0
31 TraesCS4A01G388900 chr7A 88.382 723 45 18 1628 2325 54772124 54771416 0.000000e+00 833.0
32 TraesCS4A01G388900 chr7A 86.224 784 77 14 2269 3029 54766609 54765834 0.000000e+00 821.0
33 TraesCS4A01G388900 chr7A 88.411 535 50 5 2370 2894 54771343 54770811 5.120000e-178 634.0
34 TraesCS4A01G388900 chr7A 89.262 447 45 3 2370 2815 54757022 54756578 1.140000e-154 556.0
35 TraesCS4A01G388900 chr7A 90.909 374 24 6 2836 3207 54756593 54756228 9.060000e-136 494.0
36 TraesCS4A01G388900 chr7A 87.413 429 25 16 2954 3359 54770807 54770385 1.980000e-127 466.0
37 TraesCS4A01G388900 chr7A 88.483 356 24 8 3209 3549 54756191 54755838 7.260000e-112 414.0
38 TraesCS4A01G388900 chr7A 83.607 427 49 13 1904 2324 54757507 54757096 7.360000e-102 381.0
39 TraesCS4A01G388900 chr7A 82.819 227 29 9 1926 2148 54767193 54766973 1.030000e-45 195.0
40 TraesCS4A01G388900 chr4B 86.234 770 92 10 1 763 178377782 178378544 0.000000e+00 822.0
41 TraesCS4A01G388900 chr6D 85.490 765 101 7 4 763 3061414 3060655 0.000000e+00 789.0
42 TraesCS4A01G388900 chr2B 85.734 736 94 8 4 733 516537206 516536476 0.000000e+00 767.0
43 TraesCS4A01G388900 chr2B 84.565 771 102 13 1 762 257073521 257074283 0.000000e+00 749.0
44 TraesCS4A01G388900 chr2B 83.846 780 91 23 1 763 439346087 439346848 0.000000e+00 710.0
45 TraesCS4A01G388900 chr5B 83.634 776 105 16 1 765 383023696 383024460 0.000000e+00 710.0
46 TraesCS4A01G388900 chr3D 84.626 722 86 17 4 713 578900298 578899590 0.000000e+00 695.0
47 TraesCS4A01G388900 chr2D 83.824 748 92 18 4 736 579200145 579199412 0.000000e+00 684.0
48 TraesCS4A01G388900 chr4D 82.429 774 109 23 4 763 508553475 508554235 0.000000e+00 651.0
49 TraesCS4A01G388900 chr5A 81.890 254 33 10 514 763 386469218 386468974 6.150000e-48 202.0
50 TraesCS4A01G388900 chr3B 87.500 56 2 5 710 763 781369169 781369221 3.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G388900 chr4A 666537777 666541410 3633 True 6711.000000 6711 100.000000 1 3634 1 chr4A.!!$R4 3633
1 TraesCS4A01G388900 chr4A 666811632 666813652 2020 False 1923.000000 1923 84.334000 778 2794 1 chr4A.!!$F1 2016
2 TraesCS4A01G388900 chr4A 666482382 666484803 2421 True 1104.500000 1533 85.608500 771 2875 2 chr4A.!!$R6 2104
3 TraesCS4A01G388900 chr4A 666926349 666927855 1506 False 378.000000 429 82.197500 1628 2925 2 chr4A.!!$F2 1297
4 TraesCS4A01G388900 chr4A 666288469 666292046 3577 True 230.000000 230 83.936000 3361 3600 2 chr4A.!!$R5 239
5 TraesCS4A01G388900 chr7D 52293058 52295408 2350 False 1023.000000 1347 85.360500 763 2701 2 chr7D.!!$F5 1938
6 TraesCS4A01G388900 chr7D 52232701 52236266 3565 False 662.333333 821 84.699000 839 2925 3 chr7D.!!$F3 2086
7 TraesCS4A01G388900 chr7D 52035027 52036784 1757 False 625.500000 944 84.165000 778 2344 2 chr7D.!!$F2 1566
8 TraesCS4A01G388900 chr7D 51951375 51954267 2892 True 621.800000 1225 88.101000 781 3618 5 chr7D.!!$R2 2837
9 TraesCS4A01G388900 chr7D 52266367 52268363 1996 False 471.500000 590 83.741500 778 2341 2 chr7D.!!$F4 1563
10 TraesCS4A01G388900 chr7A 54765834 54773007 7173 True 663.666667 1033 87.255333 781 3359 6 chr7A.!!$R2 2578
11 TraesCS4A01G388900 chr7A 54755838 54758671 2833 True 603.200000 1171 87.573400 777 3549 5 chr7A.!!$R1 2772
12 TraesCS4A01G388900 chr4B 178377782 178378544 762 False 822.000000 822 86.234000 1 763 1 chr4B.!!$F1 762
13 TraesCS4A01G388900 chr6D 3060655 3061414 759 True 789.000000 789 85.490000 4 763 1 chr6D.!!$R1 759
14 TraesCS4A01G388900 chr2B 516536476 516537206 730 True 767.000000 767 85.734000 4 733 1 chr2B.!!$R1 729
15 TraesCS4A01G388900 chr2B 257073521 257074283 762 False 749.000000 749 84.565000 1 762 1 chr2B.!!$F1 761
16 TraesCS4A01G388900 chr2B 439346087 439346848 761 False 710.000000 710 83.846000 1 763 1 chr2B.!!$F2 762
17 TraesCS4A01G388900 chr5B 383023696 383024460 764 False 710.000000 710 83.634000 1 765 1 chr5B.!!$F1 764
18 TraesCS4A01G388900 chr3D 578899590 578900298 708 True 695.000000 695 84.626000 4 713 1 chr3D.!!$R1 709
19 TraesCS4A01G388900 chr2D 579199412 579200145 733 True 684.000000 684 83.824000 4 736 1 chr2D.!!$R1 732
20 TraesCS4A01G388900 chr4D 508553475 508554235 760 False 651.000000 651 82.429000 4 763 1 chr4D.!!$F1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 744 0.035439 CGCCTTTTTCTAGCCCCTGA 60.035 55.0 0.0 0.0 0.0 3.86 F
1578 2056 0.041312 CAACCAACGAACGAGGCTTG 60.041 55.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 2556 0.108992 TAGTACACGCTGGCCTTTCG 60.109 55.0 3.32 7.34 0.0 3.46 R
3338 6616 0.035820 GTCGCTCACCAACCCCATAA 60.036 55.0 0.00 0.00 0.0 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 118 2.100631 GTCATCAACGAGGGTGGCG 61.101 63.158 0.00 0.00 0.00 5.69
150 156 1.304713 TCCTAACTCCCGCCTCGTT 60.305 57.895 0.00 0.00 0.00 3.85
239 245 4.155733 CATGTAGTGGGCGCGGGA 62.156 66.667 8.83 0.00 0.00 5.14
240 246 3.849951 ATGTAGTGGGCGCGGGAG 61.850 66.667 8.83 0.00 0.00 4.30
243 249 4.853142 TAGTGGGCGCGGGAGGAT 62.853 66.667 8.83 0.00 0.00 3.24
245 251 2.932569 TAGTGGGCGCGGGAGGATTA 62.933 60.000 8.83 0.00 0.00 1.75
246 252 3.546543 TGGGCGCGGGAGGATTAG 61.547 66.667 8.83 0.00 0.00 1.73
247 253 4.315941 GGGCGCGGGAGGATTAGG 62.316 72.222 8.83 0.00 0.00 2.69
248 254 4.990553 GGCGCGGGAGGATTAGGC 62.991 72.222 8.83 0.00 0.00 3.93
249 255 4.990553 GCGCGGGAGGATTAGGCC 62.991 72.222 8.83 0.00 0.00 5.19
250 256 4.315941 CGCGGGAGGATTAGGCCC 62.316 72.222 0.00 0.00 38.53 5.80
253 259 3.955044 GGGAGGATTAGGCCCGGC 61.955 72.222 0.00 0.00 31.06 6.13
254 260 2.849646 GGAGGATTAGGCCCGGCT 60.850 66.667 9.86 0.34 0.00 5.52
255 261 1.535687 GGAGGATTAGGCCCGGCTA 60.536 63.158 9.86 0.00 0.00 3.93
256 262 1.545706 GGAGGATTAGGCCCGGCTAG 61.546 65.000 9.86 0.00 0.00 3.42
257 263 0.542232 GAGGATTAGGCCCGGCTAGA 60.542 60.000 9.86 0.00 0.00 2.43
258 264 0.543174 AGGATTAGGCCCGGCTAGAG 60.543 60.000 9.86 0.00 0.00 2.43
259 265 0.542232 GGATTAGGCCCGGCTAGAGA 60.542 60.000 9.86 0.00 0.00 3.10
260 266 1.562783 GATTAGGCCCGGCTAGAGAT 58.437 55.000 9.86 0.00 0.00 2.75
261 267 1.205893 GATTAGGCCCGGCTAGAGATG 59.794 57.143 9.86 0.00 0.00 2.90
262 268 0.832135 TTAGGCCCGGCTAGAGATGG 60.832 60.000 9.86 0.00 0.00 3.51
263 269 1.726192 TAGGCCCGGCTAGAGATGGA 61.726 60.000 9.86 0.00 0.00 3.41
264 270 2.578714 GGCCCGGCTAGAGATGGAG 61.579 68.421 9.86 0.00 0.00 3.86
265 271 3.055580 CCCGGCTAGAGATGGAGC 58.944 66.667 0.00 0.00 0.00 4.70
266 272 2.647875 CCGGCTAGAGATGGAGCG 59.352 66.667 0.00 0.00 0.00 5.03
267 273 2.049618 CGGCTAGAGATGGAGCGC 60.050 66.667 0.00 0.00 0.00 5.92
268 274 2.341911 GGCTAGAGATGGAGCGCC 59.658 66.667 2.29 0.00 0.00 6.53
290 296 3.341629 CAGCCCCCTGGTGGTGAT 61.342 66.667 6.78 0.00 38.83 3.06
291 297 3.017581 AGCCCCCTGGTGGTGATC 61.018 66.667 0.00 0.00 0.00 2.92
292 298 4.489771 GCCCCCTGGTGGTGATCG 62.490 72.222 0.00 0.00 0.00 3.69
293 299 4.489771 CCCCCTGGTGGTGATCGC 62.490 72.222 0.00 0.00 0.00 4.58
294 300 4.489771 CCCCTGGTGGTGATCGCC 62.490 72.222 18.84 18.84 46.03 5.54
322 328 4.436998 GTGGCCGTGACGAGGGAG 62.437 72.222 6.54 0.00 0.00 4.30
325 331 3.827898 GCCGTGACGAGGGAGGAG 61.828 72.222 6.54 0.00 0.00 3.69
326 332 2.361357 CCGTGACGAGGGAGGAGT 60.361 66.667 6.54 0.00 0.00 3.85
327 333 2.408241 CCGTGACGAGGGAGGAGTC 61.408 68.421 6.54 0.00 35.61 3.36
328 334 1.674651 CGTGACGAGGGAGGAGTCA 60.675 63.158 0.00 0.00 41.90 3.41
329 335 1.032657 CGTGACGAGGGAGGAGTCAT 61.033 60.000 0.00 0.00 45.13 3.06
330 336 0.741915 GTGACGAGGGAGGAGTCATC 59.258 60.000 0.00 0.00 45.13 2.92
331 337 0.748367 TGACGAGGGAGGAGTCATCG 60.748 60.000 0.00 0.00 39.63 3.84
332 338 0.748729 GACGAGGGAGGAGTCATCGT 60.749 60.000 3.53 3.53 44.67 3.73
333 339 0.748729 ACGAGGGAGGAGTCATCGTC 60.749 60.000 0.00 0.00 40.63 4.20
340 346 1.479709 AGGAGTCATCGTCCTCAAGG 58.520 55.000 0.00 0.00 40.74 3.61
341 347 1.006043 AGGAGTCATCGTCCTCAAGGA 59.994 52.381 0.00 0.00 40.74 3.36
352 358 3.855255 TCCTCAAGGACAACAATGACA 57.145 42.857 0.00 0.00 39.78 3.58
353 359 4.163441 TCCTCAAGGACAACAATGACAA 57.837 40.909 0.00 0.00 39.78 3.18
354 360 3.882888 TCCTCAAGGACAACAATGACAAC 59.117 43.478 0.00 0.00 39.78 3.32
355 361 3.303990 CCTCAAGGACAACAATGACAACG 60.304 47.826 0.00 0.00 37.39 4.10
356 362 2.032799 TCAAGGACAACAATGACAACGC 59.967 45.455 0.00 0.00 0.00 4.84
357 363 0.586319 AGGACAACAATGACAACGCG 59.414 50.000 3.53 3.53 0.00 6.01
358 364 0.996727 GGACAACAATGACAACGCGC 60.997 55.000 5.73 0.00 0.00 6.86
359 365 0.996727 GACAACAATGACAACGCGCC 60.997 55.000 5.73 0.00 0.00 6.53
360 366 2.074353 CAACAATGACAACGCGCCG 61.074 57.895 5.73 0.00 0.00 6.46
361 367 3.872409 AACAATGACAACGCGCCGC 62.872 57.895 5.73 0.00 0.00 6.53
374 380 4.662961 GCCGCCACCAGCCAAAAC 62.663 66.667 0.00 0.00 38.78 2.43
375 381 3.222855 CCGCCACCAGCCAAAACA 61.223 61.111 0.00 0.00 38.78 2.83
376 382 2.336088 CGCCACCAGCCAAAACAG 59.664 61.111 0.00 0.00 38.78 3.16
377 383 2.489275 CGCCACCAGCCAAAACAGT 61.489 57.895 0.00 0.00 38.78 3.55
378 384 1.363807 GCCACCAGCCAAAACAGTC 59.636 57.895 0.00 0.00 34.35 3.51
379 385 2.041153 CCACCAGCCAAAACAGTCC 58.959 57.895 0.00 0.00 0.00 3.85
380 386 0.754957 CCACCAGCCAAAACAGTCCA 60.755 55.000 0.00 0.00 0.00 4.02
381 387 0.385390 CACCAGCCAAAACAGTCCAC 59.615 55.000 0.00 0.00 0.00 4.02
382 388 0.755327 ACCAGCCAAAACAGTCCACC 60.755 55.000 0.00 0.00 0.00 4.61
383 389 0.754957 CCAGCCAAAACAGTCCACCA 60.755 55.000 0.00 0.00 0.00 4.17
384 390 0.670162 CAGCCAAAACAGTCCACCAG 59.330 55.000 0.00 0.00 0.00 4.00
385 391 0.468029 AGCCAAAACAGTCCACCAGG 60.468 55.000 0.00 0.00 0.00 4.45
386 392 1.463553 GCCAAAACAGTCCACCAGGG 61.464 60.000 0.00 0.00 34.83 4.45
387 393 1.463553 CCAAAACAGTCCACCAGGGC 61.464 60.000 0.00 0.00 40.92 5.19
388 394 1.528309 AAAACAGTCCACCAGGGCG 60.528 57.895 0.00 0.00 46.92 6.13
389 395 1.990160 AAAACAGTCCACCAGGGCGA 61.990 55.000 0.00 0.00 46.92 5.54
390 396 2.676163 AAACAGTCCACCAGGGCGAC 62.676 60.000 0.00 0.00 46.92 5.19
410 416 4.722700 CGGGCAGGGGTCCAACAG 62.723 72.222 0.00 0.00 39.40 3.16
411 417 4.366684 GGGCAGGGGTCCAACAGG 62.367 72.222 0.00 0.00 39.19 4.00
412 418 4.366684 GGCAGGGGTCCAACAGGG 62.367 72.222 0.00 0.00 38.37 4.45
413 419 3.256960 GCAGGGGTCCAACAGGGA 61.257 66.667 0.00 0.00 45.89 4.20
420 426 4.424711 TCCAACAGGGATGGCCGC 62.425 66.667 0.00 0.00 42.15 6.53
429 435 3.499737 GATGGCCGCGGTGTGAAG 61.500 66.667 28.70 0.00 0.00 3.02
430 436 3.950794 GATGGCCGCGGTGTGAAGA 62.951 63.158 28.70 3.09 0.00 2.87
431 437 3.545124 ATGGCCGCGGTGTGAAGAA 62.545 57.895 28.70 3.84 0.00 2.52
432 438 3.423154 GGCCGCGGTGTGAAGAAG 61.423 66.667 28.70 0.00 0.00 2.85
433 439 2.357034 GCCGCGGTGTGAAGAAGA 60.357 61.111 28.70 0.00 0.00 2.87
434 440 1.959226 GCCGCGGTGTGAAGAAGAA 60.959 57.895 28.70 0.00 0.00 2.52
435 441 1.901650 GCCGCGGTGTGAAGAAGAAG 61.902 60.000 28.70 0.00 0.00 2.85
436 442 1.291877 CCGCGGTGTGAAGAAGAAGG 61.292 60.000 19.50 0.00 0.00 3.46
437 443 0.319555 CGCGGTGTGAAGAAGAAGGA 60.320 55.000 0.00 0.00 0.00 3.36
438 444 1.433534 GCGGTGTGAAGAAGAAGGAG 58.566 55.000 0.00 0.00 0.00 3.69
439 445 1.941668 GCGGTGTGAAGAAGAAGGAGG 60.942 57.143 0.00 0.00 0.00 4.30
440 446 1.618837 CGGTGTGAAGAAGAAGGAGGA 59.381 52.381 0.00 0.00 0.00 3.71
441 447 2.610727 CGGTGTGAAGAAGAAGGAGGAC 60.611 54.545 0.00 0.00 0.00 3.85
442 448 2.368875 GGTGTGAAGAAGAAGGAGGACA 59.631 50.000 0.00 0.00 0.00 4.02
443 449 3.181454 GGTGTGAAGAAGAAGGAGGACAA 60.181 47.826 0.00 0.00 0.00 3.18
444 450 3.810386 GTGTGAAGAAGAAGGAGGACAAC 59.190 47.826 0.00 0.00 0.00 3.32
445 451 3.060602 GTGAAGAAGAAGGAGGACAACG 58.939 50.000 0.00 0.00 0.00 4.10
446 452 2.963101 TGAAGAAGAAGGAGGACAACGA 59.037 45.455 0.00 0.00 0.00 3.85
447 453 3.243771 TGAAGAAGAAGGAGGACAACGAC 60.244 47.826 0.00 0.00 0.00 4.34
448 454 1.269998 AGAAGAAGGAGGACAACGACG 59.730 52.381 0.00 0.00 0.00 5.12
449 455 1.268899 GAAGAAGGAGGACAACGACGA 59.731 52.381 0.00 0.00 0.00 4.20
450 456 0.597072 AGAAGGAGGACAACGACGAC 59.403 55.000 0.00 0.00 0.00 4.34
451 457 0.313043 GAAGGAGGACAACGACGACA 59.687 55.000 0.00 0.00 0.00 4.35
452 458 0.314302 AAGGAGGACAACGACGACAG 59.686 55.000 0.00 0.00 0.00 3.51
453 459 1.733399 GGAGGACAACGACGACAGC 60.733 63.158 0.00 0.00 0.00 4.40
454 460 2.050351 AGGACAACGACGACAGCG 60.050 61.111 0.00 0.00 44.79 5.18
455 461 2.050714 GGACAACGACGACAGCGA 60.051 61.111 0.00 0.00 41.64 4.93
456 462 2.362800 GGACAACGACGACAGCGAC 61.363 63.158 0.00 0.00 41.64 5.19
457 463 1.370172 GACAACGACGACAGCGACT 60.370 57.895 0.00 0.00 41.64 4.18
458 464 0.933509 GACAACGACGACAGCGACTT 60.934 55.000 0.00 0.00 41.64 3.01
459 465 0.933509 ACAACGACGACAGCGACTTC 60.934 55.000 0.00 0.00 41.64 3.01
460 466 1.724929 AACGACGACAGCGACTTCG 60.725 57.895 0.00 0.00 41.64 3.79
461 467 2.109538 AACGACGACAGCGACTTCGA 62.110 55.000 0.00 0.00 43.02 3.71
462 468 1.859564 CGACGACAGCGACTTCGAG 60.860 63.158 2.02 0.00 43.02 4.04
463 469 1.512310 GACGACAGCGACTTCGAGG 60.512 63.158 2.02 0.00 43.02 4.63
464 470 2.876645 CGACAGCGACTTCGAGGC 60.877 66.667 2.02 0.00 43.02 4.70
465 471 2.507324 GACAGCGACTTCGAGGCC 60.507 66.667 2.02 0.00 43.02 5.19
466 472 2.992114 ACAGCGACTTCGAGGCCT 60.992 61.111 3.86 3.86 43.02 5.19
467 473 2.262915 CAGCGACTTCGAGGCCTT 59.737 61.111 6.77 0.00 43.02 4.35
468 474 1.807573 CAGCGACTTCGAGGCCTTC 60.808 63.158 6.77 0.00 43.02 3.46
469 475 2.261671 GCGACTTCGAGGCCTTCA 59.738 61.111 6.77 0.00 43.02 3.02
470 476 1.807573 GCGACTTCGAGGCCTTCAG 60.808 63.158 6.77 5.93 43.02 3.02
471 477 1.807573 CGACTTCGAGGCCTTCAGC 60.808 63.158 6.77 0.00 43.02 4.26
472 478 1.293498 GACTTCGAGGCCTTCAGCA 59.707 57.895 6.77 0.00 46.50 4.41
473 479 0.320771 GACTTCGAGGCCTTCAGCAA 60.321 55.000 6.77 0.00 46.50 3.91
474 480 0.321122 ACTTCGAGGCCTTCAGCAAG 60.321 55.000 6.77 7.59 46.50 4.01
475 481 1.642952 CTTCGAGGCCTTCAGCAAGC 61.643 60.000 6.77 0.00 46.50 4.01
476 482 2.046507 CGAGGCCTTCAGCAAGCT 60.047 61.111 6.77 0.00 46.50 3.74
477 483 2.105466 CGAGGCCTTCAGCAAGCTC 61.105 63.158 6.77 0.00 46.50 4.09
478 484 1.299321 GAGGCCTTCAGCAAGCTCT 59.701 57.895 6.77 0.00 46.50 4.09
479 485 0.322366 GAGGCCTTCAGCAAGCTCTT 60.322 55.000 6.77 0.00 46.50 2.85
480 486 0.322366 AGGCCTTCAGCAAGCTCTTC 60.322 55.000 0.00 0.00 46.50 2.87
481 487 1.642952 GGCCTTCAGCAAGCTCTTCG 61.643 60.000 0.00 0.00 46.50 3.79
482 488 1.642952 GCCTTCAGCAAGCTCTTCGG 61.643 60.000 0.00 0.00 42.97 4.30
483 489 1.642952 CCTTCAGCAAGCTCTTCGGC 61.643 60.000 0.00 0.00 0.00 5.54
484 490 1.642952 CTTCAGCAAGCTCTTCGGCC 61.643 60.000 0.00 0.00 0.00 6.13
485 491 2.046507 CAGCAAGCTCTTCGGCCT 60.047 61.111 0.00 0.00 0.00 5.19
486 492 2.046507 AGCAAGCTCTTCGGCCTG 60.047 61.111 0.00 0.00 0.00 4.85
487 493 2.359230 GCAAGCTCTTCGGCCTGT 60.359 61.111 0.00 0.00 0.00 4.00
488 494 1.079127 GCAAGCTCTTCGGCCTGTA 60.079 57.895 0.00 0.00 0.00 2.74
489 495 1.086634 GCAAGCTCTTCGGCCTGTAG 61.087 60.000 0.00 0.00 0.00 2.74
490 496 0.460987 CAAGCTCTTCGGCCTGTAGG 60.461 60.000 0.00 0.00 38.53 3.18
491 497 0.905337 AAGCTCTTCGGCCTGTAGGT 60.905 55.000 0.00 0.00 37.57 3.08
492 498 1.153549 GCTCTTCGGCCTGTAGGTG 60.154 63.158 0.00 0.00 37.57 4.00
493 499 1.153549 CTCTTCGGCCTGTAGGTGC 60.154 63.158 0.00 0.00 37.57 5.01
494 500 2.509336 CTTCGGCCTGTAGGTGCG 60.509 66.667 0.00 0.00 37.57 5.34
495 501 4.077184 TTCGGCCTGTAGGTGCGG 62.077 66.667 0.00 0.00 37.57 5.69
510 516 3.792716 GCGGCAGCAACAGTTATTT 57.207 47.368 3.18 0.00 44.35 1.40
511 517 1.617740 GCGGCAGCAACAGTTATTTC 58.382 50.000 3.18 0.00 44.35 2.17
512 518 1.732405 GCGGCAGCAACAGTTATTTCC 60.732 52.381 3.18 0.00 44.35 3.13
513 519 1.812571 CGGCAGCAACAGTTATTTCCT 59.187 47.619 0.00 0.00 0.00 3.36
514 520 2.228822 CGGCAGCAACAGTTATTTCCTT 59.771 45.455 0.00 0.00 0.00 3.36
515 521 3.670627 CGGCAGCAACAGTTATTTCCTTC 60.671 47.826 0.00 0.00 0.00 3.46
516 522 3.367395 GGCAGCAACAGTTATTTCCTTCC 60.367 47.826 0.00 0.00 0.00 3.46
517 523 3.507622 GCAGCAACAGTTATTTCCTTCCT 59.492 43.478 0.00 0.00 0.00 3.36
518 524 4.021981 GCAGCAACAGTTATTTCCTTCCTT 60.022 41.667 0.00 0.00 0.00 3.36
519 525 5.509670 GCAGCAACAGTTATTTCCTTCCTTT 60.510 40.000 0.00 0.00 0.00 3.11
520 526 6.515832 CAGCAACAGTTATTTCCTTCCTTTT 58.484 36.000 0.00 0.00 0.00 2.27
521 527 7.657336 CAGCAACAGTTATTTCCTTCCTTTTA 58.343 34.615 0.00 0.00 0.00 1.52
522 528 7.809806 CAGCAACAGTTATTTCCTTCCTTTTAG 59.190 37.037 0.00 0.00 0.00 1.85
523 529 7.505923 AGCAACAGTTATTTCCTTCCTTTTAGT 59.494 33.333 0.00 0.00 0.00 2.24
524 530 8.789762 GCAACAGTTATTTCCTTCCTTTTAGTA 58.210 33.333 0.00 0.00 0.00 1.82
570 576 4.929819 AAAAACTGTGGAACGCCTAAAT 57.070 36.364 0.00 0.00 42.39 1.40
572 578 6.584185 AAAAACTGTGGAACGCCTAAATAT 57.416 33.333 0.00 0.00 42.39 1.28
573 579 6.584185 AAAACTGTGGAACGCCTAAATATT 57.416 33.333 0.00 0.00 42.39 1.28
574 580 6.584185 AAACTGTGGAACGCCTAAATATTT 57.416 33.333 5.89 5.89 42.39 1.40
575 581 5.813080 ACTGTGGAACGCCTAAATATTTC 57.187 39.130 3.39 0.00 42.39 2.17
576 582 4.638865 ACTGTGGAACGCCTAAATATTTCC 59.361 41.667 3.39 0.00 42.39 3.13
577 583 3.623960 TGTGGAACGCCTAAATATTTCCG 59.376 43.478 3.39 8.79 42.39 4.30
578 584 3.872771 GTGGAACGCCTAAATATTTCCGA 59.127 43.478 17.32 0.00 38.92 4.55
579 585 4.333372 GTGGAACGCCTAAATATTTCCGAA 59.667 41.667 17.32 0.00 38.92 4.30
580 586 5.008316 GTGGAACGCCTAAATATTTCCGAAT 59.992 40.000 17.32 9.20 38.92 3.34
581 587 5.237779 TGGAACGCCTAAATATTTCCGAATC 59.762 40.000 17.32 14.46 38.92 2.52
582 588 5.469084 GGAACGCCTAAATATTTCCGAATCT 59.531 40.000 17.32 4.65 0.00 2.40
583 589 6.647895 GGAACGCCTAAATATTTCCGAATCTA 59.352 38.462 17.32 0.00 0.00 1.98
584 590 7.333672 GGAACGCCTAAATATTTCCGAATCTAT 59.666 37.037 17.32 0.00 0.00 1.98
585 591 7.596749 ACGCCTAAATATTTCCGAATCTATG 57.403 36.000 17.32 0.00 0.00 2.23
586 592 7.159372 ACGCCTAAATATTTCCGAATCTATGT 58.841 34.615 17.32 0.04 0.00 2.29
587 593 7.331193 ACGCCTAAATATTTCCGAATCTATGTC 59.669 37.037 17.32 0.00 0.00 3.06
588 594 7.462856 CGCCTAAATATTTCCGAATCTATGTCG 60.463 40.741 3.39 0.00 38.24 4.35
589 595 7.331193 GCCTAAATATTTCCGAATCTATGTCGT 59.669 37.037 3.39 0.00 36.77 4.34
590 596 8.648097 CCTAAATATTTCCGAATCTATGTCGTG 58.352 37.037 3.39 0.00 36.77 4.35
591 597 9.193133 CTAAATATTTCCGAATCTATGTCGTGT 57.807 33.333 3.39 0.00 36.77 4.49
592 598 8.433421 AAATATTTCCGAATCTATGTCGTGTT 57.567 30.769 0.00 0.00 36.77 3.32
593 599 8.433421 AATATTTCCGAATCTATGTCGTGTTT 57.567 30.769 0.00 0.00 36.77 2.83
594 600 5.524511 TTTCCGAATCTATGTCGTGTTTG 57.475 39.130 0.00 0.00 36.77 2.93
595 601 2.927477 TCCGAATCTATGTCGTGTTTGC 59.073 45.455 0.00 0.00 36.77 3.68
596 602 2.030457 CCGAATCTATGTCGTGTTTGCC 59.970 50.000 0.00 0.00 36.77 4.52
597 603 2.285026 CGAATCTATGTCGTGTTTGCCG 60.285 50.000 0.00 0.00 33.80 5.69
598 604 2.665649 ATCTATGTCGTGTTTGCCGA 57.334 45.000 0.00 0.00 0.00 5.54
599 605 2.442212 TCTATGTCGTGTTTGCCGAA 57.558 45.000 0.00 0.00 35.89 4.30
600 606 2.967362 TCTATGTCGTGTTTGCCGAAT 58.033 42.857 0.00 0.00 35.89 3.34
601 607 3.331150 TCTATGTCGTGTTTGCCGAATT 58.669 40.909 0.00 0.00 35.89 2.17
602 608 3.749088 TCTATGTCGTGTTTGCCGAATTT 59.251 39.130 0.00 0.00 35.89 1.82
603 609 2.853731 TGTCGTGTTTGCCGAATTTT 57.146 40.000 0.00 0.00 35.89 1.82
604 610 2.455032 TGTCGTGTTTGCCGAATTTTG 58.545 42.857 0.00 0.00 35.89 2.44
605 611 1.784283 GTCGTGTTTGCCGAATTTTGG 59.216 47.619 0.00 0.00 35.89 3.28
615 621 3.708563 CCGAATTTTGGCCGATTATGT 57.291 42.857 0.00 0.00 0.00 2.29
616 622 3.628017 CCGAATTTTGGCCGATTATGTC 58.372 45.455 0.00 0.00 0.00 3.06
617 623 3.315191 CCGAATTTTGGCCGATTATGTCT 59.685 43.478 0.00 0.00 0.00 3.41
618 624 4.202010 CCGAATTTTGGCCGATTATGTCTT 60.202 41.667 0.00 0.00 0.00 3.01
619 625 5.339990 CGAATTTTGGCCGATTATGTCTTT 58.660 37.500 0.00 0.00 0.00 2.52
620 626 5.229887 CGAATTTTGGCCGATTATGTCTTTG 59.770 40.000 0.00 0.00 0.00 2.77
621 627 5.913137 ATTTTGGCCGATTATGTCTTTGA 57.087 34.783 0.00 0.00 0.00 2.69
622 628 5.913137 TTTTGGCCGATTATGTCTTTGAT 57.087 34.783 0.00 0.00 0.00 2.57
623 629 5.913137 TTTGGCCGATTATGTCTTTGATT 57.087 34.783 0.00 0.00 0.00 2.57
624 630 5.913137 TTGGCCGATTATGTCTTTGATTT 57.087 34.783 0.00 0.00 0.00 2.17
625 631 5.913137 TGGCCGATTATGTCTTTGATTTT 57.087 34.783 0.00 0.00 0.00 1.82
626 632 6.279513 TGGCCGATTATGTCTTTGATTTTT 57.720 33.333 0.00 0.00 0.00 1.94
650 656 2.756840 ACAAAAGTACGTCTAGGGGC 57.243 50.000 0.00 0.00 0.00 5.80
651 657 1.277273 ACAAAAGTACGTCTAGGGGCC 59.723 52.381 0.00 0.00 0.00 5.80
652 658 1.553704 CAAAAGTACGTCTAGGGGCCT 59.446 52.381 0.84 0.00 0.00 5.19
653 659 1.482954 AAAGTACGTCTAGGGGCCTC 58.517 55.000 0.84 0.00 0.00 4.70
654 660 0.396835 AAGTACGTCTAGGGGCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
676 682 4.508128 GCGGCGACTCGGAATCCA 62.508 66.667 12.98 0.00 0.00 3.41
677 683 2.417516 CGGCGACTCGGAATCCAT 59.582 61.111 0.00 0.00 0.00 3.41
678 684 1.951130 CGGCGACTCGGAATCCATG 60.951 63.158 0.00 0.00 0.00 3.66
679 685 1.595382 GGCGACTCGGAATCCATGG 60.595 63.158 4.97 4.97 0.00 3.66
680 686 2.247437 GCGACTCGGAATCCATGGC 61.247 63.158 6.96 0.00 0.00 4.40
681 687 1.595382 CGACTCGGAATCCATGGCC 60.595 63.158 6.96 1.18 0.00 5.36
682 688 1.227973 GACTCGGAATCCATGGCCC 60.228 63.158 6.96 7.22 0.00 5.80
683 689 2.113986 CTCGGAATCCATGGCCCC 59.886 66.667 6.96 6.84 0.00 5.80
684 690 3.497884 CTCGGAATCCATGGCCCCC 62.498 68.421 6.96 6.46 0.00 5.40
685 691 3.819652 CGGAATCCATGGCCCCCA 61.820 66.667 6.96 0.00 38.19 4.96
686 692 2.123295 GGAATCCATGGCCCCCAC 60.123 66.667 6.96 0.00 35.80 4.61
687 693 2.689175 GAATCCATGGCCCCCACA 59.311 61.111 6.96 0.00 35.80 4.17
688 694 1.758122 GAATCCATGGCCCCCACAC 60.758 63.158 6.96 0.00 35.80 3.82
689 695 2.512986 GAATCCATGGCCCCCACACA 62.513 60.000 6.96 0.00 35.80 3.72
690 696 2.104359 AATCCATGGCCCCCACACAA 62.104 55.000 6.96 0.00 35.80 3.33
691 697 2.104359 ATCCATGGCCCCCACACAAA 62.104 55.000 6.96 0.00 35.80 2.83
692 698 1.840650 CCATGGCCCCCACACAAAA 60.841 57.895 0.00 0.00 35.80 2.44
693 699 1.414061 CCATGGCCCCCACACAAAAA 61.414 55.000 0.00 0.00 35.80 1.94
709 715 2.182904 AAAAATATCGCCGTTTCGCC 57.817 45.000 0.00 0.00 0.00 5.54
710 716 0.379316 AAAATATCGCCGTTTCGCCC 59.621 50.000 0.00 0.00 0.00 6.13
711 717 1.441732 AAATATCGCCGTTTCGCCCC 61.442 55.000 0.00 0.00 0.00 5.80
712 718 3.819877 ATATCGCCGTTTCGCCCCC 62.820 63.158 0.00 0.00 0.00 5.40
727 733 3.989787 CCCAAGCGGCGCCTTTTT 61.990 61.111 30.40 13.84 0.00 1.94
728 734 2.430751 CCAAGCGGCGCCTTTTTC 60.431 61.111 30.40 8.11 0.00 2.29
729 735 2.644992 CAAGCGGCGCCTTTTTCT 59.355 55.556 30.40 10.39 0.00 2.52
730 736 1.582610 CCAAGCGGCGCCTTTTTCTA 61.583 55.000 30.40 0.00 0.00 2.10
731 737 0.179189 CAAGCGGCGCCTTTTTCTAG 60.179 55.000 30.40 7.15 0.00 2.43
732 738 1.923227 AAGCGGCGCCTTTTTCTAGC 61.923 55.000 30.40 17.72 0.00 3.42
733 739 2.791927 CGGCGCCTTTTTCTAGCC 59.208 61.111 26.68 0.00 44.00 3.93
734 740 2.761195 CGGCGCCTTTTTCTAGCCC 61.761 63.158 26.68 0.00 44.56 5.19
735 741 2.415608 GGCGCCTTTTTCTAGCCCC 61.416 63.158 22.15 0.00 41.81 5.80
736 742 1.378646 GCGCCTTTTTCTAGCCCCT 60.379 57.895 0.00 0.00 0.00 4.79
737 743 1.657751 GCGCCTTTTTCTAGCCCCTG 61.658 60.000 0.00 0.00 0.00 4.45
738 744 0.035439 CGCCTTTTTCTAGCCCCTGA 60.035 55.000 0.00 0.00 0.00 3.86
739 745 1.756430 GCCTTTTTCTAGCCCCTGAG 58.244 55.000 0.00 0.00 0.00 3.35
740 746 1.683319 GCCTTTTTCTAGCCCCTGAGG 60.683 57.143 0.00 0.00 39.47 3.86
757 763 4.162690 GGGCGAACGGCTGGAGAT 62.163 66.667 18.90 0.00 42.94 2.75
758 764 2.892425 GGCGAACGGCTGGAGATG 60.892 66.667 13.15 0.00 42.94 2.90
759 765 3.567797 GCGAACGGCTGGAGATGC 61.568 66.667 0.00 0.00 39.11 3.91
760 766 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
761 767 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
765 771 1.227205 CGGCTGGAGATGCTCTCAC 60.227 63.158 13.06 5.59 45.12 3.51
769 775 1.068434 GCTGGAGATGCTCTCACTACC 59.932 57.143 13.06 0.00 45.12 3.18
824 833 7.571080 TTGAAACGTTCCAACCTAATTAACT 57.429 32.000 0.00 0.00 0.00 2.24
881 891 8.164057 TCTCTCTGGCTCTCCACTATATATAA 57.836 38.462 0.00 0.00 37.47 0.98
936 955 0.764369 AGGAACTCACCAGCTCCACA 60.764 55.000 0.00 0.00 37.36 4.17
952 975 1.910772 ACAAGCAGAGGAGCCGACT 60.911 57.895 0.00 0.00 34.23 4.18
983 1010 3.573491 GCACGCCGGGCATAAGAC 61.573 66.667 20.71 0.00 0.00 3.01
984 1011 2.895372 CACGCCGGGCATAAGACC 60.895 66.667 20.71 0.00 40.75 3.85
985 1012 3.395702 ACGCCGGGCATAAGACCA 61.396 61.111 20.71 0.00 46.60 4.02
986 1013 2.588877 CGCCGGGCATAAGACCAG 60.589 66.667 20.71 0.00 46.60 4.00
987 1014 2.902343 GCCGGGCATAAGACCAGC 60.902 66.667 15.62 0.00 46.60 4.85
988 1015 2.588877 CCGGGCATAAGACCAGCG 60.589 66.667 0.00 0.00 46.60 5.18
995 1034 1.009829 CATAAGACCAGCGACCAAGC 58.990 55.000 0.00 0.00 37.41 4.01
1101 1176 1.215679 AGGAGACCGAGGAGGAGGAA 61.216 60.000 0.00 0.00 45.00 3.36
1170 1245 2.461695 GAGATCAAGGAGGAGTGGTCA 58.538 52.381 0.00 0.00 0.00 4.02
1206 1281 1.348008 ACATGCAGTCCCCCATCGAT 61.348 55.000 0.00 0.00 0.00 3.59
1571 2047 4.792528 TTAGTTAACCAACCAACGAACG 57.207 40.909 0.88 0.00 35.05 3.95
1578 2056 0.041312 CAACCAACGAACGAGGCTTG 60.041 55.000 0.00 0.00 0.00 4.01
1583 2061 1.459592 CAACGAACGAGGCTTGGTTAG 59.540 52.381 6.71 8.54 0.00 2.34
1596 2074 4.081476 GGCTTGGTTAGGCTTTGATGATTT 60.081 41.667 0.00 0.00 45.60 2.17
1598 2076 6.350949 GGCTTGGTTAGGCTTTGATGATTTAA 60.351 38.462 0.00 0.00 45.60 1.52
1599 2077 6.753744 GCTTGGTTAGGCTTTGATGATTTAAG 59.246 38.462 0.00 0.00 0.00 1.85
1816 2591 3.465296 CTACCGCTACGTGGGCTCG 62.465 68.421 0.00 0.00 37.55 5.03
1887 2662 1.468736 GGTACGTCCCGTCTCATTCAC 60.469 57.143 0.00 0.00 41.54 3.18
1973 3442 2.877786 GACCATCACATGACACACAACA 59.122 45.455 0.00 0.00 0.00 3.33
1983 3452 2.159407 TGACACACAACATGCAACTGTG 60.159 45.455 19.12 19.12 44.81 3.66
2065 3542 9.166173 TCTATGTACAGATCCTTTCATTTGTTG 57.834 33.333 0.33 0.00 0.00 3.33
2069 3557 5.762045 ACAGATCCTTTCATTTGTTGTTCG 58.238 37.500 0.00 0.00 0.00 3.95
2087 3575 1.278127 TCGTGAAGAATCTTCCCACCC 59.722 52.381 19.16 2.90 31.62 4.61
2103 3593 2.504367 CACCCATTTCGTCTTTCCTGT 58.496 47.619 0.00 0.00 0.00 4.00
2168 3682 5.180117 CAGCATGCACAAGTCCTATTATACC 59.820 44.000 21.98 0.00 0.00 2.73
2171 3685 6.348786 GCATGCACAAGTCCTATTATACCATG 60.349 42.308 14.21 0.00 0.00 3.66
2189 3780 0.967662 TGTGCATGGTTGGTGAATGG 59.032 50.000 0.00 0.00 0.00 3.16
2192 3783 0.968405 GCATGGTTGGTGAATGGTGT 59.032 50.000 0.00 0.00 0.00 4.16
2346 4159 9.892130 TTTTCCTCTTACATTTCTCTAATCCTC 57.108 33.333 0.00 0.00 0.00 3.71
2351 4164 8.609617 TCTTACATTTCTCTAATCCTCTCCAA 57.390 34.615 0.00 0.00 0.00 3.53
2353 4166 9.844257 CTTACATTTCTCTAATCCTCTCCAAAT 57.156 33.333 0.00 0.00 0.00 2.32
2354 4167 9.838339 TTACATTTCTCTAATCCTCTCCAAATC 57.162 33.333 0.00 0.00 0.00 2.17
2356 4179 8.555729 ACATTTCTCTAATCCTCTCCAAATCTT 58.444 33.333 0.00 0.00 0.00 2.40
2471 5682 2.254546 TTCCACAGCGACATGAAAGT 57.745 45.000 0.00 0.00 0.00 2.66
2496 5707 4.398044 GCCTTTAATTTGGTCGATCTCCAA 59.602 41.667 12.98 12.98 42.29 3.53
2498 5709 5.648092 CCTTTAATTTGGTCGATCTCCAACT 59.352 40.000 15.57 9.92 43.45 3.16
2657 5873 2.581216 TCGCTAGGGTCGATTATCCT 57.419 50.000 6.70 0.00 43.22 3.24
2701 5917 6.257849 ACAGCTATCGTTTATGTACATGGTTG 59.742 38.462 18.81 4.04 0.00 3.77
2770 6004 4.451900 CGGCCACTGAATAATAAAGGAGT 58.548 43.478 2.24 0.00 0.00 3.85
2783 6017 4.876652 GGAGTACGTCCCGTTCAC 57.123 61.111 0.00 0.00 41.54 3.18
2807 6041 3.057386 TCCATGCATGTGTGTTGATGTTC 60.057 43.478 24.58 0.00 0.00 3.18
2869 6109 4.816126 ACTACCCATAACTCATCCAGCTA 58.184 43.478 0.00 0.00 0.00 3.32
2877 6117 0.829333 CTCATCCAGCTACCACTGCT 59.171 55.000 0.00 0.00 42.06 4.24
2931 6172 4.462280 GGTTGAGTACCGGGGCCG 62.462 72.222 6.32 0.00 37.12 6.13
2940 6182 2.498885 AGTACCGGGGCCGAAATATATC 59.501 50.000 6.32 0.00 42.83 1.63
3026 6268 9.467796 AATAGTTTAGCTCAAGAAATTAAGGCT 57.532 29.630 0.00 0.00 0.00 4.58
3029 6271 9.297037 AGTTTAGCTCAAGAAATTAAGGCTAAA 57.703 29.630 11.49 11.49 43.61 1.85
3134 6377 3.764885 AGCGTGGCTCATAAAACAATC 57.235 42.857 0.00 0.00 30.62 2.67
3136 6379 3.127548 AGCGTGGCTCATAAAACAATCAG 59.872 43.478 0.00 0.00 30.62 2.90
3139 6382 4.201851 CGTGGCTCATAAAACAATCAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
3143 6386 3.278574 TCATAAAACAATCAGGAGGGCG 58.721 45.455 0.00 0.00 0.00 6.13
3147 6390 2.202932 CAATCAGGAGGGCGGTCG 60.203 66.667 0.00 0.00 0.00 4.79
3167 6410 2.089980 GACCTCGCTACACTAGTGGAA 58.910 52.381 26.12 13.14 36.94 3.53
3169 6412 2.688958 ACCTCGCTACACTAGTGGAATC 59.311 50.000 26.12 11.73 36.94 2.52
3170 6413 2.688446 CCTCGCTACACTAGTGGAATCA 59.312 50.000 26.12 6.84 36.94 2.57
3171 6414 3.319405 CCTCGCTACACTAGTGGAATCAT 59.681 47.826 26.12 7.21 36.94 2.45
3207 6450 2.591571 TGATGCGAGATCAGACTTGG 57.408 50.000 0.00 0.00 0.00 3.61
3215 6493 2.157738 AGATCAGACTTGGCAACTTGC 58.842 47.619 5.08 5.08 44.08 4.01
3218 6496 1.134128 TCAGACTTGGCAACTTGCTCA 60.134 47.619 13.43 7.19 44.28 4.26
3220 6498 1.678101 AGACTTGGCAACTTGCTCAAC 59.322 47.619 13.43 5.84 44.28 3.18
3222 6500 1.134946 ACTTGGCAACTTGCTCAACAC 59.865 47.619 13.43 0.00 44.28 3.32
3232 6510 4.712476 ACTTGCTCAACACTTCAATCTCT 58.288 39.130 0.00 0.00 0.00 3.10
3320 6598 8.635765 AAAACTGTATGTGAATACTGACCATT 57.364 30.769 9.02 0.00 32.50 3.16
3338 6616 5.349690 ACCATTTTTGGAGAATAATGGGGT 58.650 37.500 16.46 0.00 46.83 4.95
3339 6617 5.790096 ACCATTTTTGGAGAATAATGGGGTT 59.210 36.000 16.46 0.11 46.83 4.11
3340 6618 6.962902 ACCATTTTTGGAGAATAATGGGGTTA 59.037 34.615 16.46 0.00 46.83 2.85
3341 6619 7.627293 ACCATTTTTGGAGAATAATGGGGTTAT 59.373 33.333 16.46 0.00 46.83 1.89
3342 6620 7.933033 CCATTTTTGGAGAATAATGGGGTTATG 59.067 37.037 0.00 0.00 42.55 1.90
3343 6621 7.430760 TTTTTGGAGAATAATGGGGTTATGG 57.569 36.000 0.00 0.00 33.32 2.74
3344 6622 4.740154 TGGAGAATAATGGGGTTATGGG 57.260 45.455 0.00 0.00 33.32 4.00
3345 6623 3.401002 TGGAGAATAATGGGGTTATGGGG 59.599 47.826 0.00 0.00 33.32 4.96
3346 6624 3.401342 GGAGAATAATGGGGTTATGGGGT 59.599 47.826 0.00 0.00 33.32 4.95
3347 6625 4.140782 GGAGAATAATGGGGTTATGGGGTT 60.141 45.833 0.00 0.00 33.32 4.11
3348 6626 4.814967 AGAATAATGGGGTTATGGGGTTG 58.185 43.478 0.00 0.00 33.32 3.77
3349 6627 3.628832 ATAATGGGGTTATGGGGTTGG 57.371 47.619 0.00 0.00 31.80 3.77
3350 6628 1.097722 AATGGGGTTATGGGGTTGGT 58.902 50.000 0.00 0.00 0.00 3.67
3351 6629 0.338120 ATGGGGTTATGGGGTTGGTG 59.662 55.000 0.00 0.00 0.00 4.17
3352 6630 0.776479 TGGGGTTATGGGGTTGGTGA 60.776 55.000 0.00 0.00 0.00 4.02
3353 6631 0.033503 GGGGTTATGGGGTTGGTGAG 60.034 60.000 0.00 0.00 0.00 3.51
3354 6632 0.683179 GGGTTATGGGGTTGGTGAGC 60.683 60.000 0.00 0.00 0.00 4.26
3355 6633 1.029947 GGTTATGGGGTTGGTGAGCG 61.030 60.000 0.00 0.00 0.00 5.03
3356 6634 0.035820 GTTATGGGGTTGGTGAGCGA 60.036 55.000 0.00 0.00 0.00 4.93
3357 6635 0.035820 TTATGGGGTTGGTGAGCGAC 60.036 55.000 0.00 0.00 0.00 5.19
3358 6636 1.906105 TATGGGGTTGGTGAGCGACC 61.906 60.000 12.62 12.62 46.37 4.79
3375 6653 3.488047 GCGACCAATGGTGATTCTGATTG 60.488 47.826 10.84 0.00 35.25 2.67
3377 6655 4.201851 CGACCAATGGTGATTCTGATTGAC 60.202 45.833 10.84 0.00 35.25 3.18
3380 6658 4.097437 CCAATGGTGATTCTGATTGACAGG 59.903 45.833 0.00 0.00 45.76 4.00
3393 6671 3.011517 ACAGGCCTGCCTAGGGTG 61.012 66.667 33.06 7.01 46.28 4.61
3439 10676 2.558359 GGCTTTACTCAGGCAACACAAT 59.442 45.455 0.00 0.00 39.20 2.71
3458 10695 4.687018 ACAATGTGCGTCAAATTACTCGTA 59.313 37.500 0.00 0.00 0.00 3.43
3556 14156 7.624360 AGTGAGTTAAAATGAGTGTGAACAA 57.376 32.000 0.00 0.00 0.00 2.83
3602 14202 2.059541 CCAACTTTTCTCGTCTCCGTC 58.940 52.381 0.00 0.00 35.01 4.79
3603 14203 2.545113 CCAACTTTTCTCGTCTCCGTCA 60.545 50.000 0.00 0.00 35.01 4.35
3613 14213 1.807755 CGTCTCCGTCATGCCATTGAT 60.808 52.381 0.00 0.00 0.00 2.57
3618 14218 3.990092 TCCGTCATGCCATTGATAGTAC 58.010 45.455 0.00 0.00 0.00 2.73
3619 14219 3.641436 TCCGTCATGCCATTGATAGTACT 59.359 43.478 0.00 0.00 0.00 2.73
3620 14220 4.830600 TCCGTCATGCCATTGATAGTACTA 59.169 41.667 4.77 4.77 0.00 1.82
3621 14221 5.048013 TCCGTCATGCCATTGATAGTACTAG 60.048 44.000 8.85 0.00 0.00 2.57
3622 14222 5.279006 CCGTCATGCCATTGATAGTACTAGT 60.279 44.000 8.85 0.00 0.00 2.57
3626 14226 7.875041 GTCATGCCATTGATAGTACTAGTTGAT 59.125 37.037 8.85 0.00 0.00 2.57
3627 14227 8.090831 TCATGCCATTGATAGTACTAGTTGATC 58.909 37.037 8.85 2.34 0.00 2.92
3629 14229 7.966812 TGCCATTGATAGTACTAGTTGATCAT 58.033 34.615 8.85 0.00 0.00 2.45
3630 14230 7.874528 TGCCATTGATAGTACTAGTTGATCATG 59.125 37.037 8.85 7.91 0.00 3.07
3631 14231 7.148507 GCCATTGATAGTACTAGTTGATCATGC 60.149 40.741 8.85 7.39 0.00 4.06
3632 14232 7.062722 CCATTGATAGTACTAGTTGATCATGCG 59.937 40.741 8.85 0.55 0.00 4.73
3633 14233 5.461526 TGATAGTACTAGTTGATCATGCGC 58.538 41.667 8.85 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.684104 CGGAGGAGTGGGAGGAGA 59.316 66.667 0.00 0.00 0.00 3.71
122 125 0.396001 GGAGTTAGGAGCCGAGGAGT 60.396 60.000 0.00 0.00 0.00 3.85
212 218 2.758327 ACTACATGGCGGCCTCGA 60.758 61.111 21.46 0.00 39.00 4.04
226 232 2.932569 TAATCCTCCCGCGCCCACTA 62.933 60.000 0.00 0.00 0.00 2.74
233 239 4.315941 GGGCCTAATCCTCCCGCG 62.316 72.222 0.84 0.00 0.00 6.46
236 242 3.955044 GCCGGGCCTAATCCTCCC 61.955 72.222 8.12 0.00 36.68 4.30
237 243 1.535687 TAGCCGGGCCTAATCCTCC 60.536 63.158 17.02 0.00 0.00 4.30
238 244 0.542232 TCTAGCCGGGCCTAATCCTC 60.542 60.000 17.02 0.00 0.00 3.71
239 245 0.543174 CTCTAGCCGGGCCTAATCCT 60.543 60.000 17.02 0.00 0.00 3.24
240 246 0.542232 TCTCTAGCCGGGCCTAATCC 60.542 60.000 17.02 0.00 0.00 3.01
241 247 1.205893 CATCTCTAGCCGGGCCTAATC 59.794 57.143 17.02 0.00 0.00 1.75
242 248 1.270907 CATCTCTAGCCGGGCCTAAT 58.729 55.000 17.02 0.00 0.00 1.73
243 249 0.832135 CCATCTCTAGCCGGGCCTAA 60.832 60.000 17.02 0.18 0.00 2.69
244 250 1.228894 CCATCTCTAGCCGGGCCTA 60.229 63.158 17.02 6.71 0.00 3.93
245 251 2.525381 CCATCTCTAGCCGGGCCT 60.525 66.667 17.02 5.78 0.00 5.19
246 252 2.524394 TCCATCTCTAGCCGGGCC 60.524 66.667 17.02 0.00 0.00 5.80
247 253 3.055580 CTCCATCTCTAGCCGGGC 58.944 66.667 12.11 12.11 0.00 6.13
248 254 2.925262 CGCTCCATCTCTAGCCGGG 61.925 68.421 2.18 0.00 35.22 5.73
249 255 2.647875 CGCTCCATCTCTAGCCGG 59.352 66.667 0.00 0.00 35.22 6.13
250 256 2.049618 GCGCTCCATCTCTAGCCG 60.050 66.667 0.00 0.00 35.22 5.52
251 257 2.341911 GGCGCTCCATCTCTAGCC 59.658 66.667 7.64 0.00 35.22 3.93
252 258 1.006337 CTGGCGCTCCATCTCTAGC 60.006 63.158 7.64 0.00 42.51 3.42
253 259 1.006337 GCTGGCGCTCCATCTCTAG 60.006 63.158 7.64 0.00 42.51 2.43
254 260 2.849964 CGCTGGCGCTCCATCTCTA 61.850 63.158 7.64 0.00 42.51 2.43
255 261 4.218578 CGCTGGCGCTCCATCTCT 62.219 66.667 7.64 0.00 42.51 3.10
273 279 3.341629 ATCACCACCAGGGGGCTG 61.342 66.667 8.08 5.76 41.25 4.85
274 280 3.017581 GATCACCACCAGGGGGCT 61.018 66.667 8.08 0.00 41.25 5.19
275 281 4.489771 CGATCACCACCAGGGGGC 62.490 72.222 8.08 0.00 41.25 5.80
276 282 4.489771 GCGATCACCACCAGGGGG 62.490 72.222 6.02 6.02 43.74 5.40
277 283 4.489771 GGCGATCACCACCAGGGG 62.490 72.222 0.00 0.00 42.91 4.79
278 284 4.838152 CGGCGATCACCACCAGGG 62.838 72.222 0.00 0.00 44.81 4.45
280 286 4.457496 AGCGGCGATCACCACCAG 62.457 66.667 12.98 0.00 0.00 4.00
281 287 4.451150 GAGCGGCGATCACCACCA 62.451 66.667 21.51 0.00 0.00 4.17
305 311 4.436998 CTCCCTCGTCACGGCCAC 62.437 72.222 2.24 0.00 0.00 5.01
308 314 3.827898 CTCCTCCCTCGTCACGGC 61.828 72.222 0.00 0.00 0.00 5.68
309 315 2.361357 ACTCCTCCCTCGTCACGG 60.361 66.667 0.00 0.00 0.00 4.94
310 316 1.032657 ATGACTCCTCCCTCGTCACG 61.033 60.000 0.00 0.00 40.11 4.35
311 317 0.741915 GATGACTCCTCCCTCGTCAC 59.258 60.000 0.00 0.00 40.11 3.67
312 318 0.748367 CGATGACTCCTCCCTCGTCA 60.748 60.000 0.00 0.00 41.36 4.35
313 319 0.748729 ACGATGACTCCTCCCTCGTC 60.749 60.000 0.00 0.00 38.05 4.20
314 320 0.748729 GACGATGACTCCTCCCTCGT 60.749 60.000 0.00 0.00 44.45 4.18
315 321 1.448922 GGACGATGACTCCTCCCTCG 61.449 65.000 0.00 0.00 35.56 4.63
316 322 0.106419 AGGACGATGACTCCTCCCTC 60.106 60.000 0.00 0.00 32.06 4.30
317 323 0.106419 GAGGACGATGACTCCTCCCT 60.106 60.000 7.61 0.00 45.86 4.20
318 324 2.421220 GAGGACGATGACTCCTCCC 58.579 63.158 7.61 0.00 45.86 4.30
321 327 1.006043 TCCTTGAGGACGATGACTCCT 59.994 52.381 0.00 0.00 41.18 3.69
322 328 1.475403 TCCTTGAGGACGATGACTCC 58.525 55.000 0.00 0.00 39.78 3.85
332 338 3.855255 TGTCATTGTTGTCCTTGAGGA 57.145 42.857 0.00 0.00 43.08 3.71
333 339 3.303990 CGTTGTCATTGTTGTCCTTGAGG 60.304 47.826 0.00 0.00 0.00 3.86
334 340 3.849645 GCGTTGTCATTGTTGTCCTTGAG 60.850 47.826 0.00 0.00 0.00 3.02
335 341 2.032799 GCGTTGTCATTGTTGTCCTTGA 59.967 45.455 0.00 0.00 0.00 3.02
336 342 2.384382 GCGTTGTCATTGTTGTCCTTG 58.616 47.619 0.00 0.00 0.00 3.61
337 343 1.002900 CGCGTTGTCATTGTTGTCCTT 60.003 47.619 0.00 0.00 0.00 3.36
338 344 0.586319 CGCGTTGTCATTGTTGTCCT 59.414 50.000 0.00 0.00 0.00 3.85
339 345 0.996727 GCGCGTTGTCATTGTTGTCC 60.997 55.000 8.43 0.00 0.00 4.02
340 346 0.996727 GGCGCGTTGTCATTGTTGTC 60.997 55.000 8.43 0.00 0.00 3.18
341 347 1.008995 GGCGCGTTGTCATTGTTGT 60.009 52.632 8.43 0.00 0.00 3.32
342 348 2.074353 CGGCGCGTTGTCATTGTTG 61.074 57.895 8.43 0.00 0.00 3.33
343 349 2.251075 CGGCGCGTTGTCATTGTT 59.749 55.556 8.43 0.00 0.00 2.83
344 350 4.383602 GCGGCGCGTTGTCATTGT 62.384 61.111 19.09 0.00 0.00 2.71
357 363 4.662961 GTTTTGGCTGGTGGCGGC 62.663 66.667 0.00 0.00 42.94 6.53
358 364 3.211564 CTGTTTTGGCTGGTGGCGG 62.212 63.158 0.00 0.00 42.94 6.13
359 365 2.336088 CTGTTTTGGCTGGTGGCG 59.664 61.111 0.00 0.00 42.94 5.69
360 366 1.363807 GACTGTTTTGGCTGGTGGC 59.636 57.895 0.00 0.00 40.90 5.01
361 367 0.754957 TGGACTGTTTTGGCTGGTGG 60.755 55.000 0.00 0.00 0.00 4.61
362 368 0.385390 GTGGACTGTTTTGGCTGGTG 59.615 55.000 0.00 0.00 0.00 4.17
363 369 0.755327 GGTGGACTGTTTTGGCTGGT 60.755 55.000 0.00 0.00 0.00 4.00
364 370 0.754957 TGGTGGACTGTTTTGGCTGG 60.755 55.000 0.00 0.00 0.00 4.85
365 371 0.670162 CTGGTGGACTGTTTTGGCTG 59.330 55.000 0.00 0.00 0.00 4.85
366 372 0.468029 CCTGGTGGACTGTTTTGGCT 60.468 55.000 0.00 0.00 34.57 4.75
367 373 1.463553 CCCTGGTGGACTGTTTTGGC 61.464 60.000 0.00 0.00 35.39 4.52
368 374 1.463553 GCCCTGGTGGACTGTTTTGG 61.464 60.000 0.00 0.00 35.39 3.28
369 375 1.795170 CGCCCTGGTGGACTGTTTTG 61.795 60.000 0.00 0.00 35.39 2.44
370 376 1.528309 CGCCCTGGTGGACTGTTTT 60.528 57.895 0.00 0.00 35.39 2.43
371 377 2.113139 CGCCCTGGTGGACTGTTT 59.887 61.111 0.00 0.00 35.39 2.83
372 378 2.847234 TCGCCCTGGTGGACTGTT 60.847 61.111 0.00 0.00 35.39 3.16
373 379 3.626924 GTCGCCCTGGTGGACTGT 61.627 66.667 7.02 0.00 35.39 3.55
374 380 4.394712 GGTCGCCCTGGTGGACTG 62.395 72.222 12.34 0.00 35.39 3.51
393 399 4.722700 CTGTTGGACCCCTGCCCG 62.723 72.222 0.00 0.00 0.00 6.13
394 400 4.366684 CCTGTTGGACCCCTGCCC 62.367 72.222 0.00 0.00 34.57 5.36
395 401 4.366684 CCCTGTTGGACCCCTGCC 62.367 72.222 0.00 0.00 35.39 4.85
396 402 3.256960 TCCCTGTTGGACCCCTGC 61.257 66.667 0.00 0.00 38.61 4.85
412 418 3.499737 CTTCACACCGCGGCCATC 61.500 66.667 28.58 0.00 0.00 3.51
413 419 3.545124 TTCTTCACACCGCGGCCAT 62.545 57.895 28.58 8.03 0.00 4.40
414 420 4.243008 TTCTTCACACCGCGGCCA 62.243 61.111 28.58 2.86 0.00 5.36
415 421 3.423154 CTTCTTCACACCGCGGCC 61.423 66.667 28.58 0.00 0.00 6.13
416 422 1.901650 CTTCTTCTTCACACCGCGGC 61.902 60.000 28.58 0.00 0.00 6.53
417 423 1.291877 CCTTCTTCTTCACACCGCGG 61.292 60.000 26.86 26.86 0.00 6.46
418 424 0.319555 TCCTTCTTCTTCACACCGCG 60.320 55.000 0.00 0.00 0.00 6.46
419 425 1.433534 CTCCTTCTTCTTCACACCGC 58.566 55.000 0.00 0.00 0.00 5.68
420 426 1.618837 TCCTCCTTCTTCTTCACACCG 59.381 52.381 0.00 0.00 0.00 4.94
421 427 2.368875 TGTCCTCCTTCTTCTTCACACC 59.631 50.000 0.00 0.00 0.00 4.16
422 428 3.753294 TGTCCTCCTTCTTCTTCACAC 57.247 47.619 0.00 0.00 0.00 3.82
423 429 3.492656 CGTTGTCCTCCTTCTTCTTCACA 60.493 47.826 0.00 0.00 0.00 3.58
424 430 3.060602 CGTTGTCCTCCTTCTTCTTCAC 58.939 50.000 0.00 0.00 0.00 3.18
425 431 2.963101 TCGTTGTCCTCCTTCTTCTTCA 59.037 45.455 0.00 0.00 0.00 3.02
426 432 3.318886 GTCGTTGTCCTCCTTCTTCTTC 58.681 50.000 0.00 0.00 0.00 2.87
427 433 2.288273 CGTCGTTGTCCTCCTTCTTCTT 60.288 50.000 0.00 0.00 0.00 2.52
428 434 1.269998 CGTCGTTGTCCTCCTTCTTCT 59.730 52.381 0.00 0.00 0.00 2.85
429 435 1.268899 TCGTCGTTGTCCTCCTTCTTC 59.731 52.381 0.00 0.00 0.00 2.87
430 436 1.000496 GTCGTCGTTGTCCTCCTTCTT 60.000 52.381 0.00 0.00 0.00 2.52
431 437 0.597072 GTCGTCGTTGTCCTCCTTCT 59.403 55.000 0.00 0.00 0.00 2.85
432 438 0.313043 TGTCGTCGTTGTCCTCCTTC 59.687 55.000 0.00 0.00 0.00 3.46
433 439 0.314302 CTGTCGTCGTTGTCCTCCTT 59.686 55.000 0.00 0.00 0.00 3.36
434 440 1.957562 CTGTCGTCGTTGTCCTCCT 59.042 57.895 0.00 0.00 0.00 3.69
435 441 1.733399 GCTGTCGTCGTTGTCCTCC 60.733 63.158 0.00 0.00 0.00 4.30
436 442 2.081212 CGCTGTCGTCGTTGTCCTC 61.081 63.158 0.00 0.00 0.00 3.71
437 443 2.050351 CGCTGTCGTCGTTGTCCT 60.050 61.111 0.00 0.00 0.00 3.85
438 444 2.050714 TCGCTGTCGTCGTTGTCC 60.051 61.111 0.00 0.00 36.96 4.02
439 445 0.933509 AAGTCGCTGTCGTCGTTGTC 60.934 55.000 0.00 0.00 36.96 3.18
440 446 0.933509 GAAGTCGCTGTCGTCGTTGT 60.934 55.000 0.00 0.00 36.96 3.32
441 447 1.767388 GAAGTCGCTGTCGTCGTTG 59.233 57.895 0.00 0.00 36.96 4.10
442 448 1.724929 CGAAGTCGCTGTCGTCGTT 60.725 57.895 0.00 0.00 36.96 3.85
443 449 2.127345 CGAAGTCGCTGTCGTCGT 60.127 61.111 0.00 0.00 36.96 4.34
444 450 1.859564 CTCGAAGTCGCTGTCGTCG 60.860 63.158 0.00 0.00 38.41 5.12
445 451 1.512310 CCTCGAAGTCGCTGTCGTC 60.512 63.158 0.00 0.00 38.41 4.20
446 452 2.561885 CCTCGAAGTCGCTGTCGT 59.438 61.111 0.00 0.00 38.41 4.34
447 453 2.876645 GCCTCGAAGTCGCTGTCG 60.877 66.667 0.00 0.00 39.60 4.35
448 454 2.493907 AAGGCCTCGAAGTCGCTGTC 62.494 60.000 5.23 0.00 39.60 3.51
449 455 2.493907 GAAGGCCTCGAAGTCGCTGT 62.494 60.000 5.23 0.00 39.60 4.40
450 456 1.807573 GAAGGCCTCGAAGTCGCTG 60.808 63.158 5.23 0.00 39.60 5.18
451 457 2.219325 CTGAAGGCCTCGAAGTCGCT 62.219 60.000 5.23 0.00 39.60 4.93
452 458 1.807573 CTGAAGGCCTCGAAGTCGC 60.808 63.158 5.23 0.00 39.60 5.19
453 459 1.807573 GCTGAAGGCCTCGAAGTCG 60.808 63.158 5.23 0.00 36.34 4.18
454 460 0.320771 TTGCTGAAGGCCTCGAAGTC 60.321 55.000 5.23 0.00 40.92 3.01
455 461 0.321122 CTTGCTGAAGGCCTCGAAGT 60.321 55.000 5.23 0.00 40.92 3.01
456 462 1.642952 GCTTGCTGAAGGCCTCGAAG 61.643 60.000 5.23 5.20 40.92 3.79
457 463 1.672356 GCTTGCTGAAGGCCTCGAA 60.672 57.895 5.23 0.00 40.92 3.71
458 464 2.046892 GCTTGCTGAAGGCCTCGA 60.047 61.111 5.23 0.00 40.92 4.04
459 465 2.046507 AGCTTGCTGAAGGCCTCG 60.047 61.111 5.23 0.00 40.92 4.63
460 466 0.322366 AAGAGCTTGCTGAAGGCCTC 60.322 55.000 5.23 0.00 40.92 4.70
461 467 0.322366 GAAGAGCTTGCTGAAGGCCT 60.322 55.000 0.00 0.00 40.92 5.19
462 468 1.642952 CGAAGAGCTTGCTGAAGGCC 61.643 60.000 0.00 0.00 40.92 5.19
463 469 1.642952 CCGAAGAGCTTGCTGAAGGC 61.643 60.000 0.00 0.00 42.22 4.35
464 470 1.642952 GCCGAAGAGCTTGCTGAAGG 61.643 60.000 0.00 0.00 0.00 3.46
465 471 1.642952 GGCCGAAGAGCTTGCTGAAG 61.643 60.000 0.00 0.00 0.00 3.02
466 472 1.672356 GGCCGAAGAGCTTGCTGAA 60.672 57.895 0.00 0.00 0.00 3.02
467 473 2.046892 GGCCGAAGAGCTTGCTGA 60.047 61.111 0.00 0.00 0.00 4.26
468 474 2.046507 AGGCCGAAGAGCTTGCTG 60.047 61.111 0.00 0.00 0.00 4.41
469 475 1.544825 TACAGGCCGAAGAGCTTGCT 61.545 55.000 0.00 0.00 43.20 3.91
470 476 1.079127 TACAGGCCGAAGAGCTTGC 60.079 57.895 0.00 0.00 43.20 4.01
471 477 0.460987 CCTACAGGCCGAAGAGCTTG 60.461 60.000 0.00 0.00 44.81 4.01
472 478 0.905337 ACCTACAGGCCGAAGAGCTT 60.905 55.000 0.00 0.00 39.32 3.74
473 479 1.305381 ACCTACAGGCCGAAGAGCT 60.305 57.895 0.00 0.00 39.32 4.09
474 480 1.153549 CACCTACAGGCCGAAGAGC 60.154 63.158 0.00 0.00 39.32 4.09
475 481 1.153549 GCACCTACAGGCCGAAGAG 60.154 63.158 0.00 0.00 39.32 2.85
476 482 2.978824 GCACCTACAGGCCGAAGA 59.021 61.111 0.00 0.00 39.32 2.87
477 483 2.509336 CGCACCTACAGGCCGAAG 60.509 66.667 0.00 0.00 39.32 3.79
478 484 4.077184 CCGCACCTACAGGCCGAA 62.077 66.667 0.00 0.00 39.32 4.30
483 489 4.393155 TGCTGCCGCACCTACAGG 62.393 66.667 0.00 0.00 42.25 4.00
491 497 0.958091 AAATAACTGTTGCTGCCGCA 59.042 45.000 0.00 0.00 46.24 5.69
492 498 1.617740 GAAATAACTGTTGCTGCCGC 58.382 50.000 2.69 0.00 0.00 6.53
493 499 1.812571 AGGAAATAACTGTTGCTGCCG 59.187 47.619 2.69 0.00 0.00 5.69
494 500 3.367395 GGAAGGAAATAACTGTTGCTGCC 60.367 47.826 2.69 0.00 35.22 4.85
495 501 3.507622 AGGAAGGAAATAACTGTTGCTGC 59.492 43.478 2.69 0.00 0.00 5.25
496 502 5.712152 AAGGAAGGAAATAACTGTTGCTG 57.288 39.130 2.69 0.00 0.00 4.41
497 503 6.731292 AAAAGGAAGGAAATAACTGTTGCT 57.269 33.333 2.69 0.00 0.00 3.91
498 504 7.658261 ACTAAAAGGAAGGAAATAACTGTTGC 58.342 34.615 2.69 0.00 0.00 4.17
549 555 4.929819 ATTTAGGCGTTCCACAGTTTTT 57.070 36.364 0.00 0.00 33.74 1.94
550 556 6.584185 AATATTTAGGCGTTCCACAGTTTT 57.416 33.333 0.00 0.00 33.74 2.43
551 557 6.349860 GGAAATATTTAGGCGTTCCACAGTTT 60.350 38.462 0.00 0.00 38.11 2.66
552 558 5.124936 GGAAATATTTAGGCGTTCCACAGTT 59.875 40.000 0.00 0.00 38.11 3.16
553 559 4.638865 GGAAATATTTAGGCGTTCCACAGT 59.361 41.667 0.00 0.00 38.11 3.55
554 560 4.260620 CGGAAATATTTAGGCGTTCCACAG 60.261 45.833 0.00 0.00 38.10 3.66
555 561 3.623960 CGGAAATATTTAGGCGTTCCACA 59.376 43.478 0.00 0.00 38.10 4.17
556 562 3.872771 TCGGAAATATTTAGGCGTTCCAC 59.127 43.478 0.00 0.00 38.10 4.02
557 563 4.139859 TCGGAAATATTTAGGCGTTCCA 57.860 40.909 0.00 0.00 38.10 3.53
558 564 5.469084 AGATTCGGAAATATTTAGGCGTTCC 59.531 40.000 0.00 0.00 35.42 3.62
559 565 6.541111 AGATTCGGAAATATTTAGGCGTTC 57.459 37.500 0.00 0.00 0.00 3.95
560 566 7.660208 ACATAGATTCGGAAATATTTAGGCGTT 59.340 33.333 0.00 0.00 0.00 4.84
561 567 7.159372 ACATAGATTCGGAAATATTTAGGCGT 58.841 34.615 0.00 0.00 0.00 5.68
562 568 7.462856 CGACATAGATTCGGAAATATTTAGGCG 60.463 40.741 0.00 0.00 32.66 5.52
563 569 7.331193 ACGACATAGATTCGGAAATATTTAGGC 59.669 37.037 0.00 0.00 40.92 3.93
564 570 8.648097 CACGACATAGATTCGGAAATATTTAGG 58.352 37.037 0.00 0.00 40.92 2.69
565 571 9.193133 ACACGACATAGATTCGGAAATATTTAG 57.807 33.333 0.00 0.00 40.92 1.85
566 572 9.537192 AACACGACATAGATTCGGAAATATTTA 57.463 29.630 0.00 0.00 40.92 1.40
567 573 8.433421 AACACGACATAGATTCGGAAATATTT 57.567 30.769 0.00 0.00 40.92 1.40
568 574 8.335356 CAAACACGACATAGATTCGGAAATATT 58.665 33.333 0.00 0.00 40.92 1.28
569 575 7.518370 GCAAACACGACATAGATTCGGAAATAT 60.518 37.037 0.00 0.00 40.92 1.28
570 576 6.237996 GCAAACACGACATAGATTCGGAAATA 60.238 38.462 0.00 0.00 40.92 1.40
571 577 5.447279 GCAAACACGACATAGATTCGGAAAT 60.447 40.000 0.00 0.00 40.92 2.17
572 578 4.142988 GCAAACACGACATAGATTCGGAAA 60.143 41.667 0.00 0.00 40.92 3.13
573 579 3.369756 GCAAACACGACATAGATTCGGAA 59.630 43.478 0.00 0.00 40.92 4.30
574 580 2.927477 GCAAACACGACATAGATTCGGA 59.073 45.455 0.00 0.00 40.92 4.55
575 581 2.030457 GGCAAACACGACATAGATTCGG 59.970 50.000 0.00 0.00 40.92 4.30
576 582 2.285026 CGGCAAACACGACATAGATTCG 60.285 50.000 0.00 0.00 42.36 3.34
577 583 2.927477 TCGGCAAACACGACATAGATTC 59.073 45.455 0.00 0.00 35.12 2.52
578 584 2.967362 TCGGCAAACACGACATAGATT 58.033 42.857 0.00 0.00 35.12 2.40
579 585 2.665649 TCGGCAAACACGACATAGAT 57.334 45.000 0.00 0.00 35.12 1.98
580 586 2.442212 TTCGGCAAACACGACATAGA 57.558 45.000 0.00 0.00 40.45 1.98
581 587 3.740044 AATTCGGCAAACACGACATAG 57.260 42.857 0.00 0.00 40.45 2.23
582 588 4.222886 CAAAATTCGGCAAACACGACATA 58.777 39.130 0.00 0.00 40.45 2.29
583 589 3.049206 CAAAATTCGGCAAACACGACAT 58.951 40.909 0.00 0.00 40.45 3.06
584 590 2.455032 CAAAATTCGGCAAACACGACA 58.545 42.857 0.00 0.00 40.45 4.35
585 591 1.784283 CCAAAATTCGGCAAACACGAC 59.216 47.619 0.00 0.00 40.45 4.34
586 592 2.126914 CCAAAATTCGGCAAACACGA 57.873 45.000 0.00 0.00 38.78 4.35
595 601 3.315191 AGACATAATCGGCCAAAATTCGG 59.685 43.478 2.24 0.00 0.00 4.30
596 602 4.552166 AGACATAATCGGCCAAAATTCG 57.448 40.909 2.24 0.00 0.00 3.34
597 603 6.329496 TCAAAGACATAATCGGCCAAAATTC 58.671 36.000 2.24 0.00 0.00 2.17
598 604 6.279513 TCAAAGACATAATCGGCCAAAATT 57.720 33.333 2.24 1.57 0.00 1.82
599 605 5.913137 TCAAAGACATAATCGGCCAAAAT 57.087 34.783 2.24 0.00 0.00 1.82
600 606 5.913137 ATCAAAGACATAATCGGCCAAAA 57.087 34.783 2.24 0.00 0.00 2.44
601 607 5.913137 AATCAAAGACATAATCGGCCAAA 57.087 34.783 2.24 0.00 0.00 3.28
602 608 5.913137 AAATCAAAGACATAATCGGCCAA 57.087 34.783 2.24 0.00 0.00 4.52
603 609 5.913137 AAAATCAAAGACATAATCGGCCA 57.087 34.783 2.24 0.00 0.00 5.36
626 632 5.469760 GCCCCTAGACGTACTTTTGTAAAAA 59.530 40.000 0.00 0.00 36.56 1.94
627 633 4.996758 GCCCCTAGACGTACTTTTGTAAAA 59.003 41.667 0.00 0.00 36.56 1.52
628 634 4.563374 GGCCCCTAGACGTACTTTTGTAAA 60.563 45.833 0.00 0.00 36.56 2.01
629 635 3.055891 GGCCCCTAGACGTACTTTTGTAA 60.056 47.826 0.00 0.00 36.56 2.41
630 636 2.497273 GGCCCCTAGACGTACTTTTGTA 59.503 50.000 0.00 0.00 0.00 2.41
631 637 1.277273 GGCCCCTAGACGTACTTTTGT 59.723 52.381 0.00 0.00 0.00 2.83
632 638 1.553704 AGGCCCCTAGACGTACTTTTG 59.446 52.381 0.00 0.00 0.00 2.44
633 639 1.829849 GAGGCCCCTAGACGTACTTTT 59.170 52.381 0.00 0.00 0.00 2.27
634 640 1.482954 GAGGCCCCTAGACGTACTTT 58.517 55.000 0.00 0.00 0.00 2.66
635 641 0.396835 GGAGGCCCCTAGACGTACTT 60.397 60.000 0.00 0.00 0.00 2.24
636 642 1.229643 GGAGGCCCCTAGACGTACT 59.770 63.158 0.00 0.00 0.00 2.73
637 643 1.108132 CAGGAGGCCCCTAGACGTAC 61.108 65.000 11.97 0.00 45.60 3.67
638 644 1.229359 CAGGAGGCCCCTAGACGTA 59.771 63.158 11.97 0.00 45.60 3.57
639 645 2.042843 CAGGAGGCCCCTAGACGT 60.043 66.667 11.97 0.00 45.60 4.34
640 646 2.840102 CCAGGAGGCCCCTAGACG 60.840 72.222 11.97 1.29 45.60 4.18
641 647 2.446802 CCCAGGAGGCCCCTAGAC 60.447 72.222 11.97 0.00 45.60 2.59
642 648 3.779083 CCCCAGGAGGCCCCTAGA 61.779 72.222 11.97 0.00 45.60 2.43
659 665 3.792053 ATGGATTCCGAGTCGCCGC 62.792 63.158 7.12 0.00 0.00 6.53
660 666 1.951130 CATGGATTCCGAGTCGCCG 60.951 63.158 7.12 0.00 0.00 6.46
661 667 1.595382 CCATGGATTCCGAGTCGCC 60.595 63.158 5.56 3.28 0.00 5.54
662 668 2.247437 GCCATGGATTCCGAGTCGC 61.247 63.158 18.40 0.00 0.00 5.19
663 669 1.595382 GGCCATGGATTCCGAGTCG 60.595 63.158 18.40 5.29 0.00 4.18
664 670 1.227973 GGGCCATGGATTCCGAGTC 60.228 63.158 18.40 0.00 0.00 3.36
665 671 2.757124 GGGGCCATGGATTCCGAGT 61.757 63.158 18.40 0.00 0.00 4.18
666 672 2.113986 GGGGCCATGGATTCCGAG 59.886 66.667 18.40 0.00 0.00 4.63
667 673 3.498071 GGGGGCCATGGATTCCGA 61.498 66.667 18.40 0.00 0.00 4.55
668 674 3.819652 TGGGGGCCATGGATTCCG 61.820 66.667 18.40 0.00 0.00 4.30
669 675 2.123295 GTGGGGGCCATGGATTCC 60.123 66.667 18.40 13.15 35.28 3.01
670 676 1.758122 GTGTGGGGGCCATGGATTC 60.758 63.158 18.40 3.58 35.28 2.52
671 677 2.104359 TTGTGTGGGGGCCATGGATT 62.104 55.000 18.40 0.00 35.28 3.01
672 678 2.104359 TTTGTGTGGGGGCCATGGAT 62.104 55.000 18.40 0.00 35.28 3.41
673 679 2.317992 TTTTGTGTGGGGGCCATGGA 62.318 55.000 18.40 0.00 35.28 3.41
674 680 1.414061 TTTTTGTGTGGGGGCCATGG 61.414 55.000 7.63 7.63 35.28 3.66
675 681 2.140405 TTTTTGTGTGGGGGCCATG 58.860 52.632 4.39 0.00 35.28 3.66
676 682 4.737346 TTTTTGTGTGGGGGCCAT 57.263 50.000 4.39 0.00 35.28 4.40
690 696 2.182904 GGCGAAACGGCGATATTTTT 57.817 45.000 16.62 2.28 43.33 1.94
691 697 3.909957 GGCGAAACGGCGATATTTT 57.090 47.368 16.62 2.74 43.33 1.82
710 716 3.914605 GAAAAAGGCGCCGCTTGGG 62.915 63.158 23.20 0.00 39.58 4.12
711 717 1.582610 TAGAAAAAGGCGCCGCTTGG 61.583 55.000 23.20 0.00 0.00 3.61
712 718 0.179189 CTAGAAAAAGGCGCCGCTTG 60.179 55.000 23.20 11.45 0.00 4.01
713 719 1.923227 GCTAGAAAAAGGCGCCGCTT 61.923 55.000 23.20 16.19 0.00 4.68
714 720 2.399356 GCTAGAAAAAGGCGCCGCT 61.399 57.895 23.20 16.37 0.00 5.52
715 721 2.100410 GCTAGAAAAAGGCGCCGC 59.900 61.111 23.20 12.25 0.00 6.53
716 722 2.761195 GGGCTAGAAAAAGGCGCCG 61.761 63.158 23.20 4.86 42.75 6.46
717 723 3.197614 GGGCTAGAAAAAGGCGCC 58.802 61.111 21.89 21.89 42.75 6.53
718 724 3.197614 GGGGCTAGAAAAAGGCGC 58.802 61.111 0.00 0.00 45.40 6.53
719 725 0.035439 TCAGGGGCTAGAAAAAGGCG 60.035 55.000 0.00 0.00 42.75 5.52
720 726 1.683319 CCTCAGGGGCTAGAAAAAGGC 60.683 57.143 0.00 0.00 41.17 4.35
721 727 2.426842 CCTCAGGGGCTAGAAAAAGG 57.573 55.000 0.00 0.00 0.00 3.11
740 746 4.162690 ATCTCCAGCCGTTCGCCC 62.163 66.667 0.00 0.00 38.78 6.13
741 747 2.892425 CATCTCCAGCCGTTCGCC 60.892 66.667 0.00 0.00 38.78 5.54
742 748 3.567797 GCATCTCCAGCCGTTCGC 61.568 66.667 0.00 0.00 37.98 4.70
743 749 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
744 750 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
755 761 2.778187 GGTACGGTAGTGAGAGCATC 57.222 55.000 0.00 0.00 0.00 3.91
790 798 2.681344 GGAACGTTTCAAACCTGTGTCT 59.319 45.455 0.46 0.00 0.00 3.41
791 799 2.420722 TGGAACGTTTCAAACCTGTGTC 59.579 45.455 6.86 0.00 0.00 3.67
792 800 2.438411 TGGAACGTTTCAAACCTGTGT 58.562 42.857 6.86 0.00 0.00 3.72
793 801 3.175929 GTTGGAACGTTTCAAACCTGTG 58.824 45.455 23.29 0.00 37.58 3.66
881 891 1.915769 GGAGACAGAGCTGGTGGGT 60.916 63.158 0.00 0.00 34.19 4.51
936 955 3.293702 GAGTCGGCTCCTCTGCTT 58.706 61.111 5.50 0.00 35.76 3.91
952 975 2.904866 GTGCGTTGGTGCTTGGGA 60.905 61.111 0.00 0.00 35.36 4.37
978 1005 1.295423 GGCTTGGTCGCTGGTCTTA 59.705 57.895 0.00 0.00 0.00 2.10
979 1006 2.032681 GGCTTGGTCGCTGGTCTT 59.967 61.111 0.00 0.00 0.00 3.01
980 1007 2.818169 TTGGCTTGGTCGCTGGTCT 61.818 57.895 0.00 0.00 0.00 3.85
981 1008 2.281484 TTGGCTTGGTCGCTGGTC 60.281 61.111 0.00 0.00 0.00 4.02
982 1009 2.594592 GTTGGCTTGGTCGCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
983 1010 1.973281 ATGTTGGCTTGGTCGCTGG 60.973 57.895 0.00 0.00 0.00 4.85
984 1011 1.210931 CATGTTGGCTTGGTCGCTG 59.789 57.895 0.00 0.00 0.00 5.18
985 1012 2.629656 GCATGTTGGCTTGGTCGCT 61.630 57.895 0.00 0.00 0.00 4.93
986 1013 2.126346 GCATGTTGGCTTGGTCGC 60.126 61.111 0.00 0.00 0.00 5.19
987 1014 2.176546 CGCATGTTGGCTTGGTCG 59.823 61.111 0.00 0.00 0.00 4.79
988 1015 1.210155 GACGCATGTTGGCTTGGTC 59.790 57.895 0.00 0.00 0.00 4.02
995 1034 1.431488 CCGAGATGGACGCATGTTGG 61.431 60.000 0.00 0.00 42.00 3.77
1141 1216 0.909610 TCCTTGATCTCGCCCCAGTT 60.910 55.000 0.00 0.00 0.00 3.16
1182 1257 2.036256 GGGGACTGCATGTTGCCT 59.964 61.111 0.00 0.00 44.23 4.75
1197 1272 2.341543 CTGGCGAGATCGATGGGG 59.658 66.667 0.54 0.00 43.02 4.96
1523 1980 4.210331 AGGAAGCAAGAAAGAAAAGAGCA 58.790 39.130 0.00 0.00 0.00 4.26
1524 1981 4.844998 AGGAAGCAAGAAAGAAAAGAGC 57.155 40.909 0.00 0.00 0.00 4.09
1571 2047 2.200373 TCAAAGCCTAACCAAGCCTC 57.800 50.000 0.00 0.00 0.00 4.70
1578 2056 6.456795 AGCTTAAATCATCAAAGCCTAACC 57.543 37.500 2.85 0.00 45.32 2.85
1781 2556 0.108992 TAGTACACGCTGGCCTTTCG 60.109 55.000 3.32 7.34 0.00 3.46
1816 2591 4.351054 CAGGGTGGGGTGGTGAGC 62.351 72.222 0.00 0.00 0.00 4.26
1887 2662 2.414994 ATGATGCAAGGTGAGGTGAG 57.585 50.000 0.00 0.00 0.00 3.51
1973 3442 7.669427 TGGATTCTTTTATTTCACAGTTGCAT 58.331 30.769 0.00 0.00 0.00 3.96
2037 3509 9.911788 ACAAATGAAAGGATCTGTACATAGATT 57.088 29.630 0.00 0.00 37.53 2.40
2065 3542 2.742589 GGTGGGAAGATTCTTCACGAAC 59.257 50.000 24.06 16.59 33.72 3.95
2069 3557 2.879103 TGGGTGGGAAGATTCTTCAC 57.121 50.000 24.06 22.00 33.77 3.18
2087 3575 6.725246 ACAAAAGTACAGGAAAGACGAAATG 58.275 36.000 0.00 0.00 0.00 2.32
2148 3639 6.712095 CACATGGTATAATAGGACTTGTGCAT 59.288 38.462 0.00 0.00 0.00 3.96
2168 3682 2.612604 CATTCACCAACCATGCACATG 58.387 47.619 3.56 3.56 38.51 3.21
2171 3685 0.968405 ACCATTCACCAACCATGCAC 59.032 50.000 0.00 0.00 0.00 4.57
2227 3989 8.420189 GCAAAATTGAACGAGATAGAAAACAAG 58.580 33.333 0.00 0.00 0.00 3.16
2230 3992 7.061094 CCTGCAAAATTGAACGAGATAGAAAAC 59.939 37.037 0.00 0.00 0.00 2.43
2232 3994 6.206634 ACCTGCAAAATTGAACGAGATAGAAA 59.793 34.615 0.00 0.00 0.00 2.52
2233 3995 5.705441 ACCTGCAAAATTGAACGAGATAGAA 59.295 36.000 0.00 0.00 0.00 2.10
2241 4003 1.685302 CGGACCTGCAAAATTGAACG 58.315 50.000 0.00 0.00 0.00 3.95
2330 4120 8.100135 AGATTTGGAGAGGATTAGAGAAATGT 57.900 34.615 0.00 0.00 0.00 2.71
2331 4121 8.838365 CAAGATTTGGAGAGGATTAGAGAAATG 58.162 37.037 0.00 0.00 0.00 2.32
2351 4164 3.823873 TGCACGTGGAAAATACCAAGATT 59.176 39.130 18.88 0.00 41.87 2.40
2353 4166 2.852449 TGCACGTGGAAAATACCAAGA 58.148 42.857 18.88 0.00 41.87 3.02
2354 4167 3.848272 ATGCACGTGGAAAATACCAAG 57.152 42.857 15.51 0.00 41.87 3.61
2356 4179 3.149981 TGAATGCACGTGGAAAATACCA 58.850 40.909 15.51 1.83 37.63 3.25
2358 4181 4.794169 AGTTGAATGCACGTGGAAAATAC 58.206 39.130 15.51 10.42 0.00 1.89
2363 4186 2.254546 AGAGTTGAATGCACGTGGAA 57.745 45.000 15.51 0.00 0.00 3.53
2367 4190 2.838736 AGACAAGAGTTGAATGCACGT 58.161 42.857 0.00 0.00 0.00 4.49
2421 4244 1.483415 TCCATGGTTAAGGTCTACCGC 59.517 52.381 12.58 0.00 42.08 5.68
2471 5682 3.869065 AGATCGACCAAATTAAAGGCGA 58.131 40.909 3.08 3.08 37.65 5.54
2783 6017 0.873721 TCAACACACATGCATGGACG 59.126 50.000 29.41 19.24 0.00 4.79
2869 6109 7.315890 GCTCTTTCATTTTTAATAGCAGTGGT 58.684 34.615 0.00 0.00 0.00 4.16
2877 6117 5.906113 TGCCGGCTCTTTCATTTTTAATA 57.094 34.783 29.70 0.00 0.00 0.98
2931 6172 7.271511 CAGCTGGATGGTCCTAGATATATTTC 58.728 42.308 5.57 0.00 37.46 2.17
2940 6182 0.106335 CAGCAGCTGGATGGTCCTAG 59.894 60.000 17.12 0.00 37.46 3.02
3130 6373 2.202932 CGACCGCCCTCCTGATTG 60.203 66.667 0.00 0.00 0.00 2.67
3143 6386 0.656785 CTAGTGTAGCGAGGTCGACC 59.343 60.000 27.67 27.67 43.02 4.79
3147 6390 1.747709 TCCACTAGTGTAGCGAGGTC 58.252 55.000 21.18 0.00 0.00 3.85
3158 6401 6.016192 CGTACCAGTGATATGATTCCACTAGT 60.016 42.308 0.00 0.00 38.93 2.57
3167 6410 6.840780 TCATCATCGTACCAGTGATATGAT 57.159 37.500 0.00 0.00 35.11 2.45
3169 6412 5.290400 GCATCATCATCGTACCAGTGATATG 59.710 44.000 0.00 0.00 31.74 1.78
3170 6413 5.414360 GCATCATCATCGTACCAGTGATAT 58.586 41.667 0.00 0.00 31.74 1.63
3171 6414 4.615912 CGCATCATCATCGTACCAGTGATA 60.616 45.833 0.00 0.00 31.74 2.15
3207 6450 2.849880 TGAAGTGTTGAGCAAGTTGC 57.150 45.000 20.44 20.44 45.46 4.17
3215 6493 6.609237 TTGTCAAGAGATTGAAGTGTTGAG 57.391 37.500 0.00 0.00 32.04 3.02
3218 6496 7.121168 TGTTCTTTGTCAAGAGATTGAAGTGTT 59.879 33.333 0.00 0.00 40.28 3.32
3220 6498 7.019774 TGTTCTTTGTCAAGAGATTGAAGTG 57.980 36.000 0.00 0.00 40.28 3.16
3222 6500 7.868775 TCATGTTCTTTGTCAAGAGATTGAAG 58.131 34.615 0.00 0.00 40.28 3.02
3232 6510 4.143543 TGGATGCTCATGTTCTTTGTCAA 58.856 39.130 0.00 0.00 0.00 3.18
3320 6598 5.902431 CCCATAACCCCATTATTCTCCAAAA 59.098 40.000 0.00 0.00 30.54 2.44
3338 6616 0.035820 GTCGCTCACCAACCCCATAA 60.036 55.000 0.00 0.00 0.00 1.90
3339 6617 1.600107 GTCGCTCACCAACCCCATA 59.400 57.895 0.00 0.00 0.00 2.74
3340 6618 2.351276 GTCGCTCACCAACCCCAT 59.649 61.111 0.00 0.00 0.00 4.00
3341 6619 3.948719 GGTCGCTCACCAACCCCA 61.949 66.667 0.00 0.00 45.98 4.96
3349 6627 1.398390 GAATCACCATTGGTCGCTCAC 59.602 52.381 5.04 0.00 31.02 3.51
3350 6628 1.278985 AGAATCACCATTGGTCGCTCA 59.721 47.619 5.04 0.00 31.02 4.26
3351 6629 1.667724 CAGAATCACCATTGGTCGCTC 59.332 52.381 5.04 2.58 31.02 5.03
3352 6630 1.278985 TCAGAATCACCATTGGTCGCT 59.721 47.619 5.04 0.00 31.02 4.93
3353 6631 1.737838 TCAGAATCACCATTGGTCGC 58.262 50.000 5.04 0.00 31.02 5.19
3354 6632 3.940852 TCAATCAGAATCACCATTGGTCG 59.059 43.478 5.04 2.22 31.02 4.79
3355 6633 4.701651 TGTCAATCAGAATCACCATTGGTC 59.298 41.667 5.04 0.00 31.02 4.02
3356 6634 4.665451 TGTCAATCAGAATCACCATTGGT 58.335 39.130 1.37 1.37 35.62 3.67
3357 6635 4.097437 CCTGTCAATCAGAATCACCATTGG 59.903 45.833 0.00 0.00 46.27 3.16
3358 6636 4.439700 GCCTGTCAATCAGAATCACCATTG 60.440 45.833 0.00 0.00 46.27 2.82
3359 6637 3.698040 GCCTGTCAATCAGAATCACCATT 59.302 43.478 0.00 0.00 46.27 3.16
3393 6671 2.936498 CAACGTCACTGATGATTACCCC 59.064 50.000 5.20 0.00 37.14 4.95
3439 10676 3.640592 TGTACGAGTAATTTGACGCACA 58.359 40.909 0.00 0.00 31.25 4.57
3458 10695 1.276622 AGACGCCTAAACCTCCATGT 58.723 50.000 0.00 0.00 0.00 3.21
3556 14156 4.723285 ACTTCCCGGTATATTTACCTTGGT 59.277 41.667 10.21 0.00 45.01 3.67
3602 14202 7.874528 TGATCAACTAGTACTATCAATGGCATG 59.125 37.037 0.00 0.00 0.00 4.06
3603 14203 7.966812 TGATCAACTAGTACTATCAATGGCAT 58.033 34.615 2.33 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.