Multiple sequence alignment - TraesCS4A01G387800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G387800 chr4A 100.000 4301 0 0 1 4301 665600463 665604763 0.000000e+00 7943.0
1 TraesCS4A01G387800 chr4A 97.576 165 4 0 3660 3824 642589576 642589412 2.530000e-72 283.0
2 TraesCS4A01G387800 chr4A 97.024 168 5 0 3657 3824 701091697 701091864 2.530000e-72 283.0
3 TraesCS4A01G387800 chr4A 95.455 176 7 1 3651 3825 642332533 642332358 3.280000e-71 279.0
4 TraesCS4A01G387800 chr4A 94.643 112 5 1 678 789 703218659 703218549 5.720000e-39 172.0
5 TraesCS4A01G387800 chr7D 94.352 2886 130 16 777 3662 51518602 51515750 0.000000e+00 4396.0
6 TraesCS4A01G387800 chr7D 87.010 408 32 9 3859 4266 51515549 51515163 1.420000e-119 440.0
7 TraesCS4A01G387800 chr7D 97.170 106 3 0 678 783 561963427 561963322 3.420000e-41 180.0
8 TraesCS4A01G387800 chr7D 100.000 37 0 0 3822 3858 51515753 51515717 7.720000e-08 69.4
9 TraesCS4A01G387800 chr7A 93.668 2890 154 18 774 3662 53926618 53923757 0.000000e+00 4296.0
10 TraesCS4A01G387800 chr7A 86.241 407 33 11 3864 4268 53923556 53923171 1.850000e-113 420.0
11 TraesCS4A01G387800 chr7A 88.172 93 10 1 21 112 53927940 53927848 4.550000e-20 110.0
12 TraesCS4A01G387800 chr3B 81.400 500 57 17 3113 3608 543985758 543985291 4.060000e-100 375.0
13 TraesCS4A01G387800 chr3B 81.200 500 58 17 3113 3608 543948100 543947633 1.890000e-98 370.0
14 TraesCS4A01G387800 chr3B 98.235 170 3 0 3659 3828 755167561 755167392 9.040000e-77 298.0
15 TraesCS4A01G387800 chr3B 97.196 107 2 1 669 774 548551143 548551249 3.420000e-41 180.0
16 TraesCS4A01G387800 chr3B 92.562 121 3 6 658 775 164032569 164032686 7.400000e-38 169.0
17 TraesCS4A01G387800 chr6B 99.401 167 1 0 3658 3824 147089438 147089604 1.940000e-78 303.0
18 TraesCS4A01G387800 chr6B 97.196 107 2 1 676 782 517836072 517835967 3.420000e-41 180.0
19 TraesCS4A01G387800 chr2B 98.204 167 3 0 3658 3824 472909786 472909620 4.210000e-75 292.0
20 TraesCS4A01G387800 chrUn 98.193 166 3 0 3659 3824 321005422 321005257 1.510000e-74 291.0
21 TraesCS4A01G387800 chrUn 98.193 166 3 0 3659 3824 450106013 450105848 1.510000e-74 291.0
22 TraesCS4A01G387800 chr4B 97.006 167 5 0 3660 3826 9545124 9545290 9.110000e-72 281.0
23 TraesCS4A01G387800 chr7B 95.652 115 4 1 671 785 40404456 40404569 2.640000e-42 183.0
24 TraesCS4A01G387800 chr2A 95.536 112 3 1 669 778 92494415 92494526 1.230000e-40 178.0
25 TraesCS4A01G387800 chr5B 96.262 107 4 0 670 776 91884426 91884532 4.420000e-40 176.0
26 TraesCS4A01G387800 chr1B 94.595 111 5 1 671 780 526192419 526192309 2.060000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G387800 chr4A 665600463 665604763 4300 False 7943.000000 7943 100.000000 1 4301 1 chr4A.!!$F1 4300
1 TraesCS4A01G387800 chr7D 51515163 51518602 3439 True 1635.133333 4396 93.787333 777 4266 3 chr7D.!!$R2 3489
2 TraesCS4A01G387800 chr7A 53923171 53927940 4769 True 1608.666667 4296 89.360333 21 4268 3 chr7A.!!$R1 4247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 222 0.108329 GGTGTGTCGATCGTCCCAAT 60.108 55.0 15.94 0.0 0.00 3.16 F
1465 2132 0.324738 TGCCAACTGTGGGGTTTTCA 60.325 50.0 2.82 0.0 46.09 2.69 F
1494 2161 0.660595 AGCGAGTCTTTGACGACGTG 60.661 55.0 4.58 0.0 38.52 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 2207 0.180406 GCTACCCGGTGGTTCATCAT 59.820 55.000 0.00 0.00 44.75 2.45 R
2637 3304 1.131126 CCAAGCTTGATAGTTGTGGCG 59.869 52.381 28.05 2.25 0.00 5.69 R
3401 4068 1.356624 GCTGCACCGTGGATATTGC 59.643 57.895 0.00 0.00 35.45 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.741145 GGGGTTACATACAAAGGCACG 59.259 52.381 0.00 0.00 0.00 5.34
21 22 2.429478 GGGTTACATACAAAGGCACGT 58.571 47.619 0.00 0.00 0.00 4.49
22 23 3.598299 GGGTTACATACAAAGGCACGTA 58.402 45.455 0.00 0.00 0.00 3.57
23 24 4.002316 GGGTTACATACAAAGGCACGTAA 58.998 43.478 0.00 0.00 0.00 3.18
37 38 1.374252 CGTAAGTCGCAACTGGGCT 60.374 57.895 0.00 0.00 35.36 5.19
54 55 2.093711 GGGCTTTTTGCAATATCGGGTT 60.094 45.455 0.00 0.00 45.15 4.11
58 59 4.618227 GCTTTTTGCAATATCGGGTTGAGT 60.618 41.667 0.00 0.00 42.31 3.41
87 88 2.843701 CCTGTCATGAGGCTTACATCC 58.156 52.381 0.00 0.00 0.00 3.51
94 95 1.213296 GAGGCTTACATCCCCTCCAA 58.787 55.000 0.00 0.00 39.36 3.53
97 98 2.587307 AGGCTTACATCCCCTCCAAATT 59.413 45.455 0.00 0.00 0.00 1.82
111 141 6.035843 CCCTCCAAATTCATGTTGTTATTCG 58.964 40.000 0.00 0.00 0.00 3.34
112 142 6.350110 CCCTCCAAATTCATGTTGTTATTCGT 60.350 38.462 0.00 0.00 0.00 3.85
131 161 2.871096 TGGAAATCCAGTTTACCGCT 57.129 45.000 0.00 0.00 42.01 5.52
132 162 2.706890 TGGAAATCCAGTTTACCGCTC 58.293 47.619 0.00 0.00 42.01 5.03
139 169 1.745087 CCAGTTTACCGCTCATTGCAT 59.255 47.619 0.00 0.00 43.06 3.96
164 194 5.959618 AATATGACTATCGACGTCCATGA 57.040 39.130 10.58 1.59 0.00 3.07
167 197 1.674441 GACTATCGACGTCCATGACCA 59.326 52.381 10.58 0.00 0.00 4.02
172 202 1.602237 GACGTCCATGACCACCCAT 59.398 57.895 3.51 0.00 0.00 4.00
185 215 1.218047 ACCCATGGTGTGTCGATCG 59.782 57.895 11.73 9.36 32.98 3.69
186 216 1.218047 CCCATGGTGTGTCGATCGT 59.782 57.895 15.94 0.00 0.00 3.73
187 217 0.806102 CCCATGGTGTGTCGATCGTC 60.806 60.000 15.94 10.48 0.00 4.20
190 220 1.254975 ATGGTGTGTCGATCGTCCCA 61.255 55.000 15.94 12.52 0.00 4.37
192 222 0.108329 GGTGTGTCGATCGTCCCAAT 60.108 55.000 15.94 0.00 0.00 3.16
194 224 2.417651 GGTGTGTCGATCGTCCCAATTA 60.418 50.000 15.94 0.00 0.00 1.40
197 228 3.114065 GTGTCGATCGTCCCAATTAGAC 58.886 50.000 15.94 2.10 0.00 2.59
204 235 3.869065 TCGTCCCAATTAGACCATGTTC 58.131 45.455 0.00 0.00 0.00 3.18
268 299 7.781056 TCCTTTTCCCATTTCATTATTAGCAC 58.219 34.615 0.00 0.00 0.00 4.40
272 303 9.651913 TTTTCCCATTTCATTATTAGCACTTTC 57.348 29.630 0.00 0.00 0.00 2.62
343 376 8.988060 TCATTTTCTACCTTTTTCCTTTTTCCT 58.012 29.630 0.00 0.00 0.00 3.36
346 379 8.603898 TTTCTACCTTTTTCCTTTTTCCTTCT 57.396 30.769 0.00 0.00 0.00 2.85
489 524 5.941948 ACAACCTTTCTGGAAAATACTCG 57.058 39.130 0.00 0.00 39.71 4.18
493 530 8.316214 ACAACCTTTCTGGAAAATACTCGTATA 58.684 33.333 0.00 0.00 39.71 1.47
495 532 9.901172 AACCTTTCTGGAAAATACTCGTATATT 57.099 29.630 0.00 0.00 39.71 1.28
545 582 4.362932 TTTTCTTTTCACGACATGCACA 57.637 36.364 0.00 0.00 0.00 4.57
554 1220 1.336755 ACGACATGCACAACTTTTCCC 59.663 47.619 0.00 0.00 0.00 3.97
564 1230 8.632679 CATGCACAACTTTTCCCAAGTATATAT 58.367 33.333 0.00 0.00 0.00 0.86
674 1341 8.581057 TGTGAACATTTATTTTTGCAATACGT 57.419 26.923 0.00 0.00 0.00 3.57
684 1351 7.875327 ATTTTTGCAATACGTAATACTCCCT 57.125 32.000 0.00 0.00 0.00 4.20
685 1352 6.913873 TTTTGCAATACGTAATACTCCCTC 57.086 37.500 0.00 0.00 0.00 4.30
686 1353 4.595762 TGCAATACGTAATACTCCCTCC 57.404 45.455 0.00 0.00 0.00 4.30
687 1354 3.005050 TGCAATACGTAATACTCCCTCCG 59.995 47.826 0.00 0.00 0.00 4.63
688 1355 3.005155 GCAATACGTAATACTCCCTCCGT 59.995 47.826 0.00 0.00 0.00 4.69
689 1356 4.791974 CAATACGTAATACTCCCTCCGTC 58.208 47.826 0.00 0.00 0.00 4.79
690 1357 1.685148 ACGTAATACTCCCTCCGTCC 58.315 55.000 0.00 0.00 0.00 4.79
691 1358 0.957362 CGTAATACTCCCTCCGTCCC 59.043 60.000 0.00 0.00 0.00 4.46
692 1359 1.751733 CGTAATACTCCCTCCGTCCCA 60.752 57.143 0.00 0.00 0.00 4.37
693 1360 2.391678 GTAATACTCCCTCCGTCCCAA 58.608 52.381 0.00 0.00 0.00 4.12
694 1361 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
695 1362 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
696 1363 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
697 1364 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
698 1365 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
699 1366 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
700 1367 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
701 1368 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
702 1369 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
703 1370 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
704 1371 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
705 1372 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
706 1373 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
707 1374 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
708 1375 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
709 1376 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
710 1377 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
711 1378 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
712 1379 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
713 1380 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
714 1381 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
715 1382 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
716 1383 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
719 1386 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
720 1387 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
721 1388 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
722 1389 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
723 1390 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
724 1391 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
726 1393 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
727 1394 8.728833 GTCTCAACTTTGTACTAGCTCTAGTAA 58.271 37.037 15.95 3.88 46.55 2.24
728 1395 9.293404 TCTCAACTTTGTACTAGCTCTAGTAAA 57.707 33.333 15.95 9.89 46.55 2.01
729 1396 9.909644 CTCAACTTTGTACTAGCTCTAGTAAAA 57.090 33.333 15.95 14.48 46.55 1.52
760 1427 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
761 1428 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
762 1429 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
763 1430 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
764 1431 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
765 1432 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
766 1433 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
767 1434 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
768 1435 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
769 1436 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
770 1437 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
771 1438 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
772 1439 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
787 1454 8.959705 ACGGAGGGAGTATTTTTCTATTTTAG 57.040 34.615 0.00 0.00 0.00 1.85
932 1599 5.813080 AGAACTGTTTTACGAAGCTGTTT 57.187 34.783 0.00 0.00 37.92 2.83
936 1603 4.638865 ACTGTTTTACGAAGCTGTTTCCTT 59.361 37.500 0.00 0.00 31.82 3.36
971 1638 1.375396 ACACTGCTATTCGCGCCAA 60.375 52.632 0.00 0.00 43.27 4.52
1282 1949 1.889573 GCATACGGCTTCCTGGAGC 60.890 63.158 8.94 8.94 41.96 4.70
1288 1955 2.297129 GGCTTCCTGGAGCTGAGGT 61.297 63.158 14.77 0.00 42.32 3.85
1323 1990 1.080705 GGACCACACCTCGTTCTCG 60.081 63.158 0.00 0.00 38.55 4.04
1335 2002 1.007734 GTTCTCGACCGTGCTGTCA 60.008 57.895 0.00 0.00 34.88 3.58
1338 2005 3.274455 CTCGACCGTGCTGTCAGCT 62.274 63.158 24.76 5.14 42.97 4.24
1465 2132 0.324738 TGCCAACTGTGGGGTTTTCA 60.325 50.000 2.82 0.00 46.09 2.69
1494 2161 0.660595 AGCGAGTCTTTGACGACGTG 60.661 55.000 4.58 0.00 38.52 4.49
1540 2207 2.165357 TGCTCTTCTATCAGGCCTCA 57.835 50.000 0.00 0.00 0.00 3.86
1551 2218 1.065199 TCAGGCCTCATGATGAACCAC 60.065 52.381 0.00 0.00 0.00 4.16
1644 2311 0.837272 AGGGCTATGTTACGGTGCAT 59.163 50.000 0.00 0.00 0.00 3.96
2025 2692 3.598693 TGGAATGCCATCATATGTGGT 57.401 42.857 19.22 6.12 39.92 4.16
2046 2713 9.056005 TGTGGTTATATTTATGCAGACAAGATC 57.944 33.333 0.00 0.00 0.00 2.75
2334 3001 4.840716 AGAAGGATATCTGGATGATGCC 57.159 45.455 2.05 0.00 36.65 4.40
2376 3043 3.442273 TGAACAAAAGGACTGTTGTCACC 59.558 43.478 8.24 2.88 44.61 4.02
2454 3121 3.064545 GGCTCTTCAATGAATCACCTTCG 59.935 47.826 0.00 0.00 36.60 3.79
2463 3130 3.244670 GAATCACCTTCGCATGATTCG 57.755 47.619 10.30 0.00 46.70 3.34
2486 3153 7.107542 TCGGTAACTTGGAGCTGTTTAATTAT 58.892 34.615 0.00 0.00 0.00 1.28
2487 3154 7.065324 TCGGTAACTTGGAGCTGTTTAATTATG 59.935 37.037 0.00 0.00 0.00 1.90
2525 3192 7.701539 ATGGTTTAACTGATGATGCACTTAA 57.298 32.000 0.00 0.00 0.00 1.85
2637 3304 2.618241 TGTTCATGGTCAGCAGTTTCAC 59.382 45.455 0.00 0.00 0.00 3.18
2678 3345 7.009357 GCTTGGACTCGAGTTATGTTTACTAAG 59.991 40.741 21.08 16.90 0.00 2.18
2851 3518 8.722480 TGAAATGTTCGAGAATATGAAGATGT 57.278 30.769 0.00 0.00 29.62 3.06
2871 3538 4.971939 TGTCACAAGTTGATCCTGATGAA 58.028 39.130 10.54 0.00 36.32 2.57
2892 3559 7.106439 TGAAATCACATTTGTTGGTGTACTT 57.894 32.000 0.00 0.00 36.43 2.24
2977 3644 5.526115 GTGATCATGGAATTGTGCCTAATG 58.474 41.667 0.00 0.00 0.00 1.90
2981 3648 7.506599 TGATCATGGAATTGTGCCTAATGTAAT 59.493 33.333 0.00 0.00 0.00 1.89
3003 3670 2.733227 GCACTATGCTTGCATGGTTGAC 60.733 50.000 19.36 10.19 40.96 3.18
3045 3712 0.401738 TTGAGGAGGCTGAAGGGTTG 59.598 55.000 0.00 0.00 0.00 3.77
3054 3721 1.804748 GCTGAAGGGTTGGTTAAGTCG 59.195 52.381 0.00 0.00 0.00 4.18
3195 3862 7.987458 TCTACTAAAATGCCTTATCTTCACCTG 59.013 37.037 0.00 0.00 0.00 4.00
3230 3897 3.319122 GGATCAACAAATAGATGGGGTGC 59.681 47.826 0.00 0.00 0.00 5.01
3270 3937 3.440522 GTCAAATTAGGAGAACTGCCACC 59.559 47.826 0.00 0.00 0.00 4.61
3328 3995 2.228103 AGCATGATTCACTGCTGTTGTG 59.772 45.455 17.28 0.00 46.55 3.33
3401 4068 1.618837 AGGCACAGCTGGTATATACGG 59.381 52.381 19.93 3.87 0.00 4.02
3423 4090 2.947938 ATATCCACGGTGCAGCCTGC 62.948 60.000 10.45 10.45 45.29 4.85
3497 4164 9.871238 AAACTACTCTTGTACCACATATAACTG 57.129 33.333 0.00 0.00 0.00 3.16
3530 4197 3.065925 GGCATCTAAGGCATTGTTCTGAC 59.934 47.826 0.00 0.00 0.00 3.51
3539 4206 3.181510 GGCATTGTTCTGACGATACAACC 60.182 47.826 0.00 0.00 34.90 3.77
3551 4218 6.950545 TGACGATACAACCTTTTGTTTACAG 58.049 36.000 0.00 0.00 43.89 2.74
3612 4279 1.005924 GTGGATGGGTGAACCTGGAAT 59.994 52.381 0.00 0.00 41.11 3.01
3621 4288 3.139077 GTGAACCTGGAATCGTGAAACT 58.861 45.455 0.00 0.00 31.75 2.66
3662 4329 0.459899 TCGGATCGCATGCTTGTACT 59.540 50.000 17.13 0.00 0.00 2.73
3663 4330 0.855349 CGGATCGCATGCTTGTACTC 59.145 55.000 17.13 3.12 0.00 2.59
3664 4331 1.221414 GGATCGCATGCTTGTACTCC 58.779 55.000 17.13 8.47 0.00 3.85
3665 4332 1.221414 GATCGCATGCTTGTACTCCC 58.779 55.000 17.13 0.00 0.00 4.30
3666 4333 0.833287 ATCGCATGCTTGTACTCCCT 59.167 50.000 17.13 0.00 0.00 4.20
3667 4334 0.175760 TCGCATGCTTGTACTCCCTC 59.824 55.000 17.13 0.00 0.00 4.30
3668 4335 0.811616 CGCATGCTTGTACTCCCTCC 60.812 60.000 17.13 0.00 0.00 4.30
3669 4336 0.811616 GCATGCTTGTACTCCCTCCG 60.812 60.000 11.37 0.00 0.00 4.63
3670 4337 0.537188 CATGCTTGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
3671 4338 1.066143 CATGCTTGTACTCCCTCCGTT 60.066 52.381 0.00 0.00 0.00 4.44
3672 4339 0.606604 TGCTTGTACTCCCTCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
3673 4340 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
3674 4341 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
3675 4342 2.731572 CTTGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
3676 4343 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3677 4344 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3678 4345 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3679 4346 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3680 4347 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3681 4348 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3682 4349 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3683 4350 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3684 4351 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3685 4352 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3686 4353 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3687 4354 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3688 4355 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3689 4356 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3690 4357 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3707 4374 8.926715 AGTCTTTTTAGTGGTTTCAAATGAAC 57.073 30.769 0.00 0.00 33.13 3.18
3708 4375 8.749354 AGTCTTTTTAGTGGTTTCAAATGAACT 58.251 29.630 0.00 0.00 33.13 3.01
3711 4378 9.796120 CTTTTTAGTGGTTTCAAATGAACTACA 57.204 29.630 6.32 0.00 33.13 2.74
3713 4380 9.575783 TTTTAGTGGTTTCAAATGAACTACAAC 57.424 29.630 6.32 0.00 33.13 3.32
3714 4381 6.767524 AGTGGTTTCAAATGAACTACAACA 57.232 33.333 7.77 0.00 33.13 3.33
3715 4382 7.346751 AGTGGTTTCAAATGAACTACAACAT 57.653 32.000 7.77 0.00 33.13 2.71
3716 4383 8.458573 AGTGGTTTCAAATGAACTACAACATA 57.541 30.769 7.77 0.00 33.13 2.29
3717 4384 8.349983 AGTGGTTTCAAATGAACTACAACATAC 58.650 33.333 7.77 2.82 33.13 2.39
3718 4385 7.322699 GTGGTTTCAAATGAACTACAACATACG 59.677 37.037 0.00 0.00 33.13 3.06
3719 4386 6.799925 GGTTTCAAATGAACTACAACATACGG 59.200 38.462 0.00 0.00 33.13 4.02
3720 4387 7.308109 GGTTTCAAATGAACTACAACATACGGA 60.308 37.037 0.00 0.00 33.13 4.69
3721 4388 7.915293 TTCAAATGAACTACAACATACGGAT 57.085 32.000 0.00 0.00 0.00 4.18
3722 4389 7.302350 TCAAATGAACTACAACATACGGATG 57.698 36.000 5.94 5.94 39.16 3.51
3724 4391 8.035984 TCAAATGAACTACAACATACGGATGTA 58.964 33.333 15.10 0.00 45.93 2.29
3725 4392 8.826710 CAAATGAACTACAACATACGGATGTAT 58.173 33.333 15.10 8.21 45.93 2.29
3732 4399 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
3764 4431 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3765 4432 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3766 4433 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3767 4434 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3768 4435 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3769 4436 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3770 4437 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3771 4438 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3772 4439 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3773 4440 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3774 4441 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3775 4442 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3776 4443 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3777 4444 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
3778 4445 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
3779 4446 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
3780 4447 1.754803 TGCTCCGTATGTAGTCCCTTG 59.245 52.381 0.00 0.00 0.00 3.61
3781 4448 1.755380 GCTCCGTATGTAGTCCCTTGT 59.245 52.381 0.00 0.00 0.00 3.16
3782 4449 2.167900 GCTCCGTATGTAGTCCCTTGTT 59.832 50.000 0.00 0.00 0.00 2.83
3783 4450 3.782046 CTCCGTATGTAGTCCCTTGTTG 58.218 50.000 0.00 0.00 0.00 3.33
3784 4451 3.433343 TCCGTATGTAGTCCCTTGTTGA 58.567 45.455 0.00 0.00 0.00 3.18
3785 4452 3.833650 TCCGTATGTAGTCCCTTGTTGAA 59.166 43.478 0.00 0.00 0.00 2.69
3786 4453 4.283978 TCCGTATGTAGTCCCTTGTTGAAA 59.716 41.667 0.00 0.00 0.00 2.69
3787 4454 5.046159 TCCGTATGTAGTCCCTTGTTGAAAT 60.046 40.000 0.00 0.00 0.00 2.17
3788 4455 5.293569 CCGTATGTAGTCCCTTGTTGAAATC 59.706 44.000 0.00 0.00 0.00 2.17
3789 4456 6.106673 CGTATGTAGTCCCTTGTTGAAATCT 58.893 40.000 0.00 0.00 0.00 2.40
3790 4457 6.255887 CGTATGTAGTCCCTTGTTGAAATCTC 59.744 42.308 0.00 0.00 0.00 2.75
3791 4458 5.825593 TGTAGTCCCTTGTTGAAATCTCT 57.174 39.130 0.00 0.00 0.00 3.10
3792 4459 6.928348 TGTAGTCCCTTGTTGAAATCTCTA 57.072 37.500 0.00 0.00 0.00 2.43
3793 4460 7.311092 TGTAGTCCCTTGTTGAAATCTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
3794 4461 7.741785 TGTAGTCCCTTGTTGAAATCTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
3795 4462 8.215050 TGTAGTCCCTTGTTGAAATCTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
3796 4463 9.063615 GTAGTCCCTTGTTGAAATCTCTAAAAA 57.936 33.333 0.00 0.00 0.00 1.94
3797 4464 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
3798 4465 7.998964 AGTCCCTTGTTGAAATCTCTAAAAAGA 59.001 33.333 0.00 0.00 0.00 2.52
3799 4466 8.076781 GTCCCTTGTTGAAATCTCTAAAAAGAC 58.923 37.037 0.00 0.00 0.00 3.01
3800 4467 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
3801 4468 8.633561 CCCTTGTTGAAATCTCTAAAAAGACTT 58.366 33.333 0.00 0.00 0.00 3.01
3818 4485 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3819 4486 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3820 4487 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3821 4488 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3822 4489 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3823 4490 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3824 4491 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3859 4526 7.093068 TGTGCCATCATTTAGAGGTAGACTAAA 60.093 37.037 0.00 0.00 41.75 1.85
3861 4528 9.154632 TGCCATCATTTAGAGGTAGACTAAATA 57.845 33.333 0.00 0.00 43.87 1.40
3862 4529 9.998106 GCCATCATTTAGAGGTAGACTAAATAA 57.002 33.333 0.00 0.00 43.87 1.40
3880 4714 3.565050 GGCGCCAAATTTTGCCAG 58.435 55.556 24.80 3.62 46.76 4.85
3895 4729 0.612744 GCCAGAGCAGAAACCTCTCT 59.387 55.000 0.00 0.00 37.57 3.10
3901 4735 2.167487 GAGCAGAAACCTCTCTACCAGG 59.833 54.545 0.00 0.00 37.03 4.45
3919 4753 3.746492 CCAGGTTAAGAAGAGTTTGGTCG 59.254 47.826 0.00 0.00 0.00 4.79
3935 4769 1.001631 TCGGCAGAGGATGGAAGGA 59.998 57.895 0.00 0.00 0.00 3.36
3973 4808 0.321564 TGTTCAGTTCCATCCCTGCG 60.322 55.000 0.00 0.00 0.00 5.18
3981 4816 1.376683 CCATCCCTGCGTTTCGGAA 60.377 57.895 0.00 0.00 0.00 4.30
3985 4820 3.253955 CCTGCGTTTCGGAACAGG 58.746 61.111 7.49 10.40 43.45 4.00
3993 4828 0.395312 TTTCGGAACAGGGGTGACTC 59.605 55.000 0.00 0.00 0.00 3.36
4007 4842 1.134788 GTGACTCTGGGATGTAACCGG 60.135 57.143 0.00 0.00 35.63 5.28
4014 4849 1.520787 GGATGTAACCGGGTCTGCG 60.521 63.158 6.32 0.00 0.00 5.18
4034 4869 3.630312 GCGAAAAATACCCAGCCAATCTA 59.370 43.478 0.00 0.00 0.00 1.98
4035 4870 4.278419 GCGAAAAATACCCAGCCAATCTAT 59.722 41.667 0.00 0.00 0.00 1.98
4036 4871 5.562890 GCGAAAAATACCCAGCCAATCTATC 60.563 44.000 0.00 0.00 0.00 2.08
4073 4908 2.581354 CCTCTTCTGCCCTCCACG 59.419 66.667 0.00 0.00 0.00 4.94
4139 4975 4.932789 GCACAGGGAATGCGACTA 57.067 55.556 0.00 0.00 32.45 2.59
4140 4976 2.384203 GCACAGGGAATGCGACTAC 58.616 57.895 0.00 0.00 32.45 2.73
4141 4977 0.391130 GCACAGGGAATGCGACTACA 60.391 55.000 0.00 0.00 32.45 2.74
4142 4978 1.743772 GCACAGGGAATGCGACTACAT 60.744 52.381 0.00 0.00 32.45 2.29
4143 4979 1.935873 CACAGGGAATGCGACTACATG 59.064 52.381 0.00 0.00 0.00 3.21
4144 4980 1.134401 ACAGGGAATGCGACTACATGG 60.134 52.381 0.00 0.00 0.00 3.66
4145 4981 0.179045 AGGGAATGCGACTACATGGC 60.179 55.000 0.00 0.00 0.00 4.40
4147 4983 0.940126 GGAATGCGACTACATGGCAG 59.060 55.000 0.00 0.00 46.10 4.85
4148 4984 0.940126 GAATGCGACTACATGGCAGG 59.060 55.000 0.00 0.00 46.10 4.85
4149 4985 0.464373 AATGCGACTACATGGCAGGG 60.464 55.000 3.46 0.00 46.10 4.45
4150 4986 2.897350 GCGACTACATGGCAGGGC 60.897 66.667 3.46 0.00 31.07 5.19
4221 5057 1.072965 CAGAGCTTCACCAGGGAAGTT 59.927 52.381 11.16 5.10 44.81 2.66
4222 5058 1.072965 AGAGCTTCACCAGGGAAGTTG 59.927 52.381 11.16 0.00 44.81 3.16
4228 5064 0.251297 CACCAGGGAAGTTGATGCCA 60.251 55.000 0.00 0.00 32.31 4.92
4233 5069 0.610232 GGGAAGTTGATGCCACAGCT 60.610 55.000 0.00 0.00 40.80 4.24
4268 5104 1.590932 CTTCTTCGCCTGATGGATGG 58.409 55.000 0.00 0.00 34.57 3.51
4269 5105 0.911769 TTCTTCGCCTGATGGATGGT 59.088 50.000 0.00 0.00 34.57 3.55
4270 5106 0.911769 TCTTCGCCTGATGGATGGTT 59.088 50.000 0.00 0.00 34.57 3.67
4271 5107 1.019673 CTTCGCCTGATGGATGGTTG 58.980 55.000 0.00 0.00 34.57 3.77
4272 5108 0.617935 TTCGCCTGATGGATGGTTGA 59.382 50.000 0.00 0.00 34.57 3.18
4273 5109 0.617935 TCGCCTGATGGATGGTTGAA 59.382 50.000 0.00 0.00 34.57 2.69
4274 5110 1.019673 CGCCTGATGGATGGTTGAAG 58.980 55.000 0.00 0.00 34.57 3.02
4275 5111 0.743097 GCCTGATGGATGGTTGAAGC 59.257 55.000 0.00 0.00 34.57 3.86
4276 5112 1.019673 CCTGATGGATGGTTGAAGCG 58.980 55.000 0.00 0.00 34.57 4.68
4277 5113 1.019673 CTGATGGATGGTTGAAGCGG 58.980 55.000 0.00 0.00 0.00 5.52
4278 5114 0.327924 TGATGGATGGTTGAAGCGGT 59.672 50.000 0.00 0.00 0.00 5.68
4279 5115 1.557371 TGATGGATGGTTGAAGCGGTA 59.443 47.619 0.00 0.00 0.00 4.02
4280 5116 2.026729 TGATGGATGGTTGAAGCGGTAA 60.027 45.455 0.00 0.00 0.00 2.85
4281 5117 1.816074 TGGATGGTTGAAGCGGTAAC 58.184 50.000 0.00 0.00 0.00 2.50
4282 5118 1.092348 GGATGGTTGAAGCGGTAACC 58.908 55.000 11.54 11.54 45.15 2.85
4283 5119 1.092348 GATGGTTGAAGCGGTAACCC 58.908 55.000 14.95 1.90 44.48 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.429478 ACGTGCCTTTGTATGTAACCC 58.571 47.619 0.00 0.00 0.00 4.11
2 3 4.692155 ACTTACGTGCCTTTGTATGTAACC 59.308 41.667 0.00 0.00 34.79 2.85
3 4 5.443693 CGACTTACGTGCCTTTGTATGTAAC 60.444 44.000 0.00 0.00 34.79 2.50
4 5 4.622313 CGACTTACGTGCCTTTGTATGTAA 59.378 41.667 0.00 0.00 36.57 2.41
6 7 2.991190 CGACTTACGTGCCTTTGTATGT 59.009 45.455 0.00 0.00 37.22 2.29
7 8 2.222729 GCGACTTACGTGCCTTTGTATG 60.223 50.000 0.00 0.00 44.60 2.39
8 9 1.997606 GCGACTTACGTGCCTTTGTAT 59.002 47.619 0.00 0.00 44.60 2.29
9 10 1.269673 TGCGACTTACGTGCCTTTGTA 60.270 47.619 0.00 0.00 44.60 2.41
11 12 0.584396 TTGCGACTTACGTGCCTTTG 59.416 50.000 0.00 0.00 44.60 2.77
12 13 0.584876 GTTGCGACTTACGTGCCTTT 59.415 50.000 0.00 0.00 44.60 3.11
13 14 0.249741 AGTTGCGACTTACGTGCCTT 60.250 50.000 0.00 0.00 44.60 4.35
15 16 1.491563 CAGTTGCGACTTACGTGCC 59.508 57.895 3.02 0.00 44.60 5.01
16 17 1.491563 CCAGTTGCGACTTACGTGC 59.508 57.895 3.02 0.00 44.60 5.34
17 18 1.897398 GCCCAGTTGCGACTTACGTG 61.897 60.000 3.02 0.00 44.60 4.49
18 19 1.666872 GCCCAGTTGCGACTTACGT 60.667 57.895 3.02 0.00 44.60 3.57
19 20 0.949105 AAGCCCAGTTGCGACTTACG 60.949 55.000 3.02 0.00 45.66 3.18
20 21 1.235724 AAAGCCCAGTTGCGACTTAC 58.764 50.000 3.02 0.00 32.54 2.34
21 22 1.975660 AAAAGCCCAGTTGCGACTTA 58.024 45.000 3.02 0.00 32.54 2.24
22 23 1.111277 AAAAAGCCCAGTTGCGACTT 58.889 45.000 3.02 0.00 32.54 3.01
23 24 0.385390 CAAAAAGCCCAGTTGCGACT 59.615 50.000 0.00 0.00 36.25 4.18
24 25 1.215014 GCAAAAAGCCCAGTTGCGAC 61.215 55.000 0.00 0.00 38.39 5.19
25 26 1.067250 GCAAAAAGCCCAGTTGCGA 59.933 52.632 0.00 0.00 38.39 5.10
26 27 3.628958 GCAAAAAGCCCAGTTGCG 58.371 55.556 0.00 0.00 38.39 4.85
27 28 1.596603 ATTGCAAAAAGCCCAGTTGC 58.403 45.000 1.71 0.76 46.21 4.17
28 29 3.613737 CGATATTGCAAAAAGCCCAGTTG 59.386 43.478 1.71 0.00 44.83 3.16
29 30 3.368323 CCGATATTGCAAAAAGCCCAGTT 60.368 43.478 1.71 0.00 44.83 3.16
30 31 2.166254 CCGATATTGCAAAAAGCCCAGT 59.834 45.455 1.71 0.00 44.83 4.00
31 32 2.481795 CCCGATATTGCAAAAAGCCCAG 60.482 50.000 1.71 0.00 44.83 4.45
32 33 1.480137 CCCGATATTGCAAAAAGCCCA 59.520 47.619 1.71 0.00 44.83 5.36
33 34 1.480545 ACCCGATATTGCAAAAAGCCC 59.519 47.619 1.71 0.00 44.83 5.19
37 38 4.764823 AGACTCAACCCGATATTGCAAAAA 59.235 37.500 1.71 0.00 0.00 1.94
54 55 1.053835 TGACAGGCCCACAAGACTCA 61.054 55.000 0.00 0.00 0.00 3.41
58 59 0.325933 CTCATGACAGGCCCACAAGA 59.674 55.000 0.00 0.00 0.00 3.02
87 88 6.035843 CGAATAACAACATGAATTTGGAGGG 58.964 40.000 0.00 0.00 0.00 4.30
94 95 7.759433 GGATTTCCACGAATAACAACATGAATT 59.241 33.333 0.00 0.00 35.64 2.17
97 98 5.707764 TGGATTTCCACGAATAACAACATGA 59.292 36.000 0.00 0.00 42.01 3.07
111 141 2.418976 GAGCGGTAAACTGGATTTCCAC 59.581 50.000 0.00 0.00 42.01 4.02
112 142 2.039216 TGAGCGGTAAACTGGATTTCCA 59.961 45.455 0.00 0.00 45.30 3.53
131 161 7.148755 CGTCGATAGTCATATTTCATGCAATGA 60.149 37.037 0.42 0.00 45.59 2.57
132 162 6.952083 CGTCGATAGTCATATTTCATGCAATG 59.048 38.462 0.42 0.00 41.64 2.82
139 169 5.761165 TGGACGTCGATAGTCATATTTCA 57.239 39.130 20.47 9.20 40.20 2.69
167 197 1.218047 CGATCGACACACCATGGGT 59.782 57.895 18.09 8.43 36.19 4.51
172 202 1.465200 TTGGGACGATCGACACACCA 61.465 55.000 21.72 14.79 0.00 4.17
176 206 3.114065 GTCTAATTGGGACGATCGACAC 58.886 50.000 24.34 18.34 0.00 3.67
179 209 2.380941 TGGTCTAATTGGGACGATCGA 58.619 47.619 24.34 0.00 34.82 3.59
180 210 2.882927 TGGTCTAATTGGGACGATCG 57.117 50.000 14.88 14.88 34.82 3.69
185 215 7.881775 AATAAGAACATGGTCTAATTGGGAC 57.118 36.000 15.10 5.24 0.00 4.46
242 273 8.424133 GTGCTAATAATGAAATGGGAAAAGGAT 58.576 33.333 0.00 0.00 0.00 3.24
249 280 7.953005 TGAAAGTGCTAATAATGAAATGGGA 57.047 32.000 0.00 0.00 0.00 4.37
468 503 5.941948 ACGAGTATTTTCCAGAAAGGTTG 57.058 39.130 0.00 0.00 39.02 3.77
469 504 9.901172 AATATACGAGTATTTTCCAGAAAGGTT 57.099 29.630 0.73 0.00 39.02 3.50
470 505 9.901172 AAATATACGAGTATTTTCCAGAAAGGT 57.099 29.630 0.73 0.00 31.91 3.50
523 560 4.738124 TGTGCATGTCGTGAAAAGAAAAA 58.262 34.783 0.00 0.00 0.00 1.94
526 563 3.376859 AGTTGTGCATGTCGTGAAAAGAA 59.623 39.130 0.00 0.00 0.00 2.52
527 564 2.942376 AGTTGTGCATGTCGTGAAAAGA 59.058 40.909 0.00 0.00 0.00 2.52
528 565 3.338818 AGTTGTGCATGTCGTGAAAAG 57.661 42.857 0.00 0.00 0.00 2.27
533 570 2.384382 GGAAAAGTTGTGCATGTCGTG 58.616 47.619 0.00 0.00 0.00 4.35
534 571 1.336755 GGGAAAAGTTGTGCATGTCGT 59.663 47.619 0.00 0.00 0.00 4.34
535 572 1.336440 TGGGAAAAGTTGTGCATGTCG 59.664 47.619 0.00 0.00 0.00 4.35
536 573 3.181476 ACTTGGGAAAAGTTGTGCATGTC 60.181 43.478 0.00 0.00 0.00 3.06
537 574 2.765699 ACTTGGGAAAAGTTGTGCATGT 59.234 40.909 0.00 0.00 0.00 3.21
538 575 3.457610 ACTTGGGAAAAGTTGTGCATG 57.542 42.857 0.00 0.00 0.00 4.06
539 576 8.766994 ATATATACTTGGGAAAAGTTGTGCAT 57.233 30.769 0.00 0.00 0.00 3.96
540 577 9.688091 TTATATATACTTGGGAAAAGTTGTGCA 57.312 29.630 0.00 0.00 0.00 4.57
541 578 9.946165 GTTATATATACTTGGGAAAAGTTGTGC 57.054 33.333 0.00 0.00 0.00 4.57
648 1314 9.202273 ACGTATTGCAAAAATAAATGTTCACAT 57.798 25.926 1.71 0.00 38.41 3.21
649 1315 8.581057 ACGTATTGCAAAAATAAATGTTCACA 57.419 26.923 1.71 0.00 0.00 3.58
669 1336 3.416156 GGACGGAGGGAGTATTACGTAT 58.584 50.000 0.00 0.00 34.43 3.06
670 1337 2.487265 GGGACGGAGGGAGTATTACGTA 60.487 54.545 0.00 0.00 34.43 3.57
671 1338 1.685148 GGACGGAGGGAGTATTACGT 58.315 55.000 0.00 0.00 37.26 3.57
672 1339 0.957362 GGGACGGAGGGAGTATTACG 59.043 60.000 0.00 0.00 0.00 3.18
673 1340 2.077687 TGGGACGGAGGGAGTATTAC 57.922 55.000 0.00 0.00 0.00 1.89
674 1341 2.852714 TTGGGACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
676 1343 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
677 1344 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
678 1345 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
679 1346 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
680 1347 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
681 1348 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
682 1349 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
683 1350 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
684 1351 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
685 1352 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
686 1353 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
687 1354 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
688 1355 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
689 1356 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
690 1357 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
693 1360 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
694 1361 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
695 1362 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
696 1363 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
697 1364 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
698 1365 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
699 1366 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
700 1367 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
701 1368 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
702 1369 8.859236 TTACTAGAGCTAGTACAAAGTTGAGA 57.141 34.615 15.07 0.00 45.32 3.27
703 1370 9.909644 TTTTACTAGAGCTAGTACAAAGTTGAG 57.090 33.333 15.07 0.00 45.32 3.02
734 1401 9.167311 CCAAAATAAGTGTCTTGAGCTTAGTAT 57.833 33.333 0.00 0.00 0.00 2.12
735 1402 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
736 1403 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
737 1404 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
738 1405 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
739 1406 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
740 1407 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
741 1408 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
742 1409 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
743 1410 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
744 1411 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
745 1412 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
746 1413 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
747 1414 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
748 1415 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
749 1416 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
750 1417 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
751 1418 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
752 1419 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
753 1420 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
754 1421 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
755 1422 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
756 1423 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
757 1424 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
758 1425 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
759 1426 2.504585 AGAAAAATACTCCCTCCGTCCC 59.495 50.000 0.00 0.00 0.00 4.46
760 1427 3.908643 AGAAAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
761 1428 7.860918 AAAATAGAAAAATACTCCCTCCGTC 57.139 36.000 0.00 0.00 0.00 4.79
762 1429 8.765517 TCTAAAATAGAAAAATACTCCCTCCGT 58.234 33.333 0.00 0.00 0.00 4.69
763 1430 9.609346 TTCTAAAATAGAAAAATACTCCCTCCG 57.391 33.333 0.00 0.00 41.53 4.63
895 1562 0.539438 GTTCTTCATGGGGCCACACA 60.539 55.000 11.75 2.26 0.00 3.72
902 1569 4.069304 TCGTAAAACAGTTCTTCATGGGG 58.931 43.478 0.00 0.00 0.00 4.96
982 1649 4.760047 GCCGAAGAAGCTCCCGCA 62.760 66.667 0.00 0.00 39.10 5.69
1029 1696 3.437795 GAGTCCGCCGTTCCGAGA 61.438 66.667 0.00 0.00 0.00 4.04
1086 1753 1.069090 GTCGTGGGAGCAGACACAA 59.931 57.895 5.70 0.00 37.45 3.33
1091 1758 3.062466 CCTCGTCGTGGGAGCAGA 61.062 66.667 5.40 0.00 0.00 4.26
1116 1783 1.153289 CATCAGCCTGTTCCCGGAG 60.153 63.158 0.73 0.00 0.00 4.63
1173 1840 1.787847 CATTCCGTCGAACACCTGC 59.212 57.895 0.00 0.00 0.00 4.85
1174 1841 1.635663 GGCATTCCGTCGAACACCTG 61.636 60.000 0.00 0.00 0.00 4.00
1252 1919 2.495409 CGTATGCAGCCTCCCGGTA 61.495 63.158 0.00 0.00 0.00 4.02
1256 1923 3.406595 AAGCCGTATGCAGCCTCCC 62.407 63.158 0.00 0.00 44.83 4.30
1271 1938 1.078567 CACCTCAGCTCCAGGAAGC 60.079 63.158 14.28 0.00 42.82 3.86
1282 1949 4.803426 GAGCCCGCGACACCTCAG 62.803 72.222 8.23 0.00 0.00 3.35
1317 1984 1.004277 CTGACAGCACGGTCGAGAAC 61.004 60.000 0.00 0.00 40.72 3.01
1323 1990 2.024319 GACAGCTGACAGCACGGTC 61.024 63.158 28.43 24.99 45.56 4.79
1540 2207 0.180406 GCTACCCGGTGGTTCATCAT 59.820 55.000 0.00 0.00 44.75 2.45
1578 2245 2.814604 CGACCGGGCATCTGATCA 59.185 61.111 8.76 0.00 0.00 2.92
1644 2311 3.241530 AACGCCAGCTCCACCTCA 61.242 61.111 0.00 0.00 0.00 3.86
1770 2437 1.103398 CCTCCCCATTCCGCATCAAC 61.103 60.000 0.00 0.00 0.00 3.18
2025 2692 9.927668 TCATCGATCTTGTCTGCATAAATATAA 57.072 29.630 0.00 0.00 0.00 0.98
2046 2713 5.171476 TCAAAAAGTTCTCTAGCCTCATCG 58.829 41.667 0.00 0.00 0.00 3.84
2376 3043 9.499479 AGAAAACCAGCTATCATCACATTATAG 57.501 33.333 0.00 0.00 0.00 1.31
2454 3121 2.032178 GCTCCAAGTTACCGAATCATGC 59.968 50.000 0.00 0.00 0.00 4.06
2463 3130 7.416326 CCCATAATTAAACAGCTCCAAGTTACC 60.416 40.741 0.00 0.00 0.00 2.85
2486 3153 1.678635 CCATTTTGAGCGAGCCCCA 60.679 57.895 0.00 0.00 0.00 4.96
2487 3154 1.250840 AACCATTTTGAGCGAGCCCC 61.251 55.000 0.00 0.00 0.00 5.80
2568 3235 5.819901 GCTTATGAGGCTAGAAACAACTGAT 59.180 40.000 0.00 0.00 0.00 2.90
2637 3304 1.131126 CCAAGCTTGATAGTTGTGGCG 59.869 52.381 28.05 2.25 0.00 5.69
2678 3345 9.717942 AATATAGGCTAATGAGTGAATTCTGAC 57.282 33.333 7.05 0.00 0.00 3.51
2849 3516 4.622260 TCATCAGGATCAACTTGTGACA 57.378 40.909 0.00 0.00 39.72 3.58
2851 3518 6.149973 GTGATTTCATCAGGATCAACTTGTGA 59.850 38.462 0.00 0.00 40.53 3.58
2871 3538 7.202526 CAGAAAGTACACCAACAAATGTGATT 58.797 34.615 0.00 0.00 36.35 2.57
2881 3548 5.682943 TTACATGCAGAAAGTACACCAAC 57.317 39.130 0.00 0.00 0.00 3.77
3003 3670 4.141390 ACCATGCCTCTCCTACAAAATAGG 60.141 45.833 0.00 0.00 36.06 2.57
3045 3712 4.412207 GTTCAAATGGCATCGACTTAACC 58.588 43.478 0.00 0.00 0.00 2.85
3054 3721 4.679662 CTGAATCAGGTTCAAATGGCATC 58.320 43.478 0.00 0.00 45.74 3.91
3189 3856 3.440127 TCCATGTACACTGATCAGGTGA 58.560 45.455 26.08 11.14 38.01 4.02
3195 3862 6.741992 TTTGTTGATCCATGTACACTGATC 57.258 37.500 21.37 21.37 35.33 2.92
3270 3937 5.292101 CCAGCTATAACCAACTTCTTTCTCG 59.708 44.000 0.00 0.00 0.00 4.04
3328 3995 3.208594 ACTGACCTACCGTTGGAAAAAC 58.791 45.455 5.98 0.00 0.00 2.43
3401 4068 1.356624 GCTGCACCGTGGATATTGC 59.643 57.895 0.00 0.00 35.45 3.56
3485 4152 5.163622 CCAAAGTGAAGGCAGTTATATGTGG 60.164 44.000 0.00 0.00 36.67 4.17
3551 4218 7.409465 ACTTTCAGACGTTCTACAAAAGATC 57.591 36.000 15.35 0.00 33.05 2.75
3612 4279 2.628178 ACCTGACAGATGAGTTTCACGA 59.372 45.455 3.32 0.00 0.00 4.35
3621 4288 5.592054 GATTGAATCGTACCTGACAGATGA 58.408 41.667 3.32 0.00 0.00 2.92
3662 4329 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3663 4330 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3664 4331 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3681 4348 9.366216 GTTCATTTGAAACCACTAAAAAGACTT 57.634 29.630 0.00 0.00 35.58 3.01
3682 4349 8.749354 AGTTCATTTGAAACCACTAAAAAGACT 58.251 29.630 0.00 0.00 35.58 3.24
3683 4350 8.926715 AGTTCATTTGAAACCACTAAAAAGAC 57.073 30.769 0.00 0.00 35.58 3.01
3685 4352 9.796120 TGTAGTTCATTTGAAACCACTAAAAAG 57.204 29.630 0.00 0.00 35.58 2.27
3687 4354 9.575783 GTTGTAGTTCATTTGAAACCACTAAAA 57.424 29.630 0.00 0.00 35.58 1.52
3688 4355 8.740906 TGTTGTAGTTCATTTGAAACCACTAAA 58.259 29.630 0.00 0.00 35.58 1.85
3689 4356 8.282455 TGTTGTAGTTCATTTGAAACCACTAA 57.718 30.769 0.00 0.00 35.58 2.24
3690 4357 7.867305 TGTTGTAGTTCATTTGAAACCACTA 57.133 32.000 0.00 0.00 35.58 2.74
3691 4358 6.767524 TGTTGTAGTTCATTTGAAACCACT 57.232 33.333 0.00 0.00 35.58 4.00
3692 4359 7.322699 CGTATGTTGTAGTTCATTTGAAACCAC 59.677 37.037 0.00 0.00 35.58 4.16
3693 4360 7.356540 CGTATGTTGTAGTTCATTTGAAACCA 58.643 34.615 0.00 0.00 35.58 3.67
3694 4361 6.799925 CCGTATGTTGTAGTTCATTTGAAACC 59.200 38.462 0.00 0.00 35.58 3.27
3695 4362 7.577979 TCCGTATGTTGTAGTTCATTTGAAAC 58.422 34.615 0.00 0.00 35.58 2.78
3696 4363 7.731882 TCCGTATGTTGTAGTTCATTTGAAA 57.268 32.000 0.00 0.00 35.58 2.69
3697 4364 7.389330 ACATCCGTATGTTGTAGTTCATTTGAA 59.611 33.333 0.00 0.00 44.07 2.69
3698 4365 6.876789 ACATCCGTATGTTGTAGTTCATTTGA 59.123 34.615 0.00 0.00 44.07 2.69
3699 4366 7.072177 ACATCCGTATGTTGTAGTTCATTTG 57.928 36.000 0.00 0.00 44.07 2.32
3700 4367 8.958119 ATACATCCGTATGTTGTAGTTCATTT 57.042 30.769 0.00 0.00 44.07 2.32
3706 4373 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
3742 4409 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3743 4410 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3744 4411 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3745 4412 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3746 4413 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3747 4414 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3748 4415 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3749 4416 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3750 4417 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3751 4418 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3752 4419 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3753 4420 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3754 4421 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
3755 4422 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
3756 4423 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
3757 4424 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
3758 4425 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
3759 4426 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
3760 4427 1.754803 CAAGGGACTACATACGGAGCA 59.245 52.381 0.00 0.00 38.49 4.26
3761 4428 1.755380 ACAAGGGACTACATACGGAGC 59.245 52.381 0.00 0.00 38.49 4.70
3762 4429 3.446161 TCAACAAGGGACTACATACGGAG 59.554 47.826 0.00 0.00 38.49 4.63
3763 4430 3.433343 TCAACAAGGGACTACATACGGA 58.567 45.455 0.00 0.00 38.49 4.69
3764 4431 3.880047 TCAACAAGGGACTACATACGG 57.120 47.619 0.00 0.00 38.49 4.02
3765 4432 6.106673 AGATTTCAACAAGGGACTACATACG 58.893 40.000 0.00 0.00 38.49 3.06
3766 4433 7.331791 AGAGATTTCAACAAGGGACTACATAC 58.668 38.462 0.00 0.00 38.49 2.39
3767 4434 7.496346 AGAGATTTCAACAAGGGACTACATA 57.504 36.000 0.00 0.00 38.49 2.29
3768 4435 6.380079 AGAGATTTCAACAAGGGACTACAT 57.620 37.500 0.00 0.00 38.49 2.29
3769 4436 5.825593 AGAGATTTCAACAAGGGACTACA 57.174 39.130 0.00 0.00 38.49 2.74
3770 4437 8.617290 TTTTAGAGATTTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
3771 4438 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
3773 4440 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
3774 4441 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
3775 4442 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
3792 4459 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3793 4460 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3794 4461 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3795 4462 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3796 4463 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3797 4464 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3798 4465 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3799 4466 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3800 4467 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3801 4468 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3802 4469 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3803 4470 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3804 4471 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3805 4472 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3806 4473 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3807 4474 4.736611 ATATGTACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
3808 4475 3.614568 ATATGTACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
3809 4476 5.245526 ACATTATATGTACTCCCTCCGTTCC 59.754 44.000 0.00 0.00 42.78 3.62
3810 4477 6.157211 CACATTATATGTACTCCCTCCGTTC 58.843 44.000 0.00 0.00 42.70 3.95
3811 4478 5.601313 ACACATTATATGTACTCCCTCCGTT 59.399 40.000 0.00 0.00 42.70 4.44
3812 4479 5.010719 CACACATTATATGTACTCCCTCCGT 59.989 44.000 0.00 0.00 42.70 4.69
3813 4480 5.470368 CACACATTATATGTACTCCCTCCG 58.530 45.833 0.00 0.00 42.70 4.63
3814 4481 5.238583 GCACACATTATATGTACTCCCTCC 58.761 45.833 0.00 0.00 42.70 4.30
3815 4482 5.221641 TGGCACACATTATATGTACTCCCTC 60.222 44.000 0.00 0.00 42.70 4.30
3816 4483 4.658435 TGGCACACATTATATGTACTCCCT 59.342 41.667 0.00 0.00 42.70 4.20
3817 4484 4.968259 TGGCACACATTATATGTACTCCC 58.032 43.478 0.00 0.00 42.70 4.30
3859 4526 2.022764 GGCAAAATTTGGCGCCTTAT 57.977 45.000 29.70 17.73 46.51 1.73
3861 4528 4.377370 GGCAAAATTTGGCGCCTT 57.623 50.000 29.70 11.32 46.51 4.35
3880 4714 2.167487 CCTGGTAGAGAGGTTTCTGCTC 59.833 54.545 0.00 0.00 32.53 4.26
3892 4726 6.166982 CCAAACTCTTCTTAACCTGGTAGAG 58.833 44.000 17.88 17.88 36.18 2.43
3895 4729 5.510179 CGACCAAACTCTTCTTAACCTGGTA 60.510 44.000 0.00 0.00 36.09 3.25
3901 4735 3.135994 TGCCGACCAAACTCTTCTTAAC 58.864 45.455 0.00 0.00 0.00 2.01
3906 4740 1.433534 CTCTGCCGACCAAACTCTTC 58.566 55.000 0.00 0.00 0.00 2.87
3919 4753 1.148048 GCTCCTTCCATCCTCTGCC 59.852 63.158 0.00 0.00 0.00 4.85
3973 4808 0.108019 AGTCACCCCTGTTCCGAAAC 59.892 55.000 0.00 0.00 35.85 2.78
3981 4816 0.911525 CATCCCAGAGTCACCCCTGT 60.912 60.000 0.00 0.00 0.00 4.00
3985 4820 1.209747 GGTTACATCCCAGAGTCACCC 59.790 57.143 0.00 0.00 0.00 4.61
3993 4828 0.178068 CAGACCCGGTTACATCCCAG 59.822 60.000 0.00 0.00 0.00 4.45
4007 4842 1.132453 GCTGGGTATTTTTCGCAGACC 59.868 52.381 12.73 0.00 44.77 3.85
4014 4849 6.547510 ACAGATAGATTGGCTGGGTATTTTTC 59.452 38.462 0.00 0.00 34.05 2.29
4095 4931 1.833630 GGACAGTCACCATGATCCTCA 59.166 52.381 2.17 0.00 0.00 3.86
4096 4932 1.202463 CGGACAGTCACCATGATCCTC 60.202 57.143 2.17 0.00 0.00 3.71
4106 4942 2.433318 GCTCAGCCGGACAGTCAC 60.433 66.667 5.05 0.00 0.00 3.67
4151 4987 2.885644 ATGTAGCTTGCGACGGCG 60.886 61.111 6.12 6.12 44.10 6.46
4152 4988 2.703409 CATGTAGCTTGCGACGGC 59.297 61.111 0.00 0.00 40.52 5.68
4179 5015 2.174319 CGCCTCGAGCCTTAAAGCC 61.174 63.158 6.99 0.00 38.78 4.35
4221 5057 1.297689 GGTGAGAGCTGTGGCATCA 59.702 57.895 0.00 0.00 41.70 3.07
4222 5058 1.812922 CGGTGAGAGCTGTGGCATC 60.813 63.158 0.00 0.00 41.70 3.91
4233 5069 1.075698 AGAAGGTCTTCTCCGGTGAGA 59.924 52.381 6.29 3.37 46.13 3.27
4248 5084 1.590932 CATCCATCAGGCGAAGAAGG 58.409 55.000 0.00 0.00 33.74 3.46
4249 5085 1.134280 ACCATCCATCAGGCGAAGAAG 60.134 52.381 0.00 0.00 33.74 2.85
4250 5086 0.911769 ACCATCCATCAGGCGAAGAA 59.088 50.000 0.00 0.00 33.74 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.