Multiple sequence alignment - TraesCS4A01G387000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G387000 chr4A 100.000 6473 0 0 1 6473 664489638 664483166 0.000000e+00 11954
1 TraesCS4A01G387000 chr4A 90.291 103 10 0 2126 2228 722083718 722083820 1.130000e-27 135
2 TraesCS4A01G387000 chr4A 90.291 103 10 0 2126 2228 722101104 722101206 1.130000e-27 135
3 TraesCS4A01G387000 chr4A 98.485 66 1 0 6408 6473 93969785 93969720 4.100000e-22 117
4 TraesCS4A01G387000 chr4A 98.462 65 1 0 6409 6473 719051899 719051835 1.470000e-21 115
5 TraesCS4A01G387000 chr7A 92.699 5917 287 44 30 5859 52972702 52966844 0.000000e+00 8399
6 TraesCS4A01G387000 chr7A 80.508 354 32 13 5866 6195 52966801 52966461 3.020000e-58 237
7 TraesCS4A01G387000 chr7D 94.698 4244 162 19 1 4209 49889184 49884969 0.000000e+00 6532
8 TraesCS4A01G387000 chr7D 92.326 1668 66 14 4204 5860 49885000 49883384 0.000000e+00 2314
9 TraesCS4A01G387000 chr7D 85.782 211 15 9 5870 6077 49883293 49883095 6.580000e-50 209
10 TraesCS4A01G387000 chr4B 82.268 485 71 12 885 1362 193993937 193993461 7.810000e-109 405
11 TraesCS4A01G387000 chr4B 87.204 211 26 1 1516 1725 193993401 193993191 8.390000e-59 239
12 TraesCS4A01G387000 chr4B 85.841 113 9 1 2126 2231 193969459 193969347 5.300000e-21 113
13 TraesCS4A01G387000 chr2A 84.304 395 49 5 964 1346 748500886 748500493 2.200000e-99 374
14 TraesCS4A01G387000 chr2A 98.507 67 1 0 6407 6473 542559196 542559130 1.140000e-22 119
15 TraesCS4A01G387000 chr2B 87.226 274 34 1 1391 1663 646627913 646628186 1.750000e-80 311
16 TraesCS4A01G387000 chr5D 89.600 125 13 0 2302 2426 341195086 341195210 6.720000e-35 159
17 TraesCS4A01G387000 chr5A 88.800 125 14 0 2302 2426 442354578 442354702 3.130000e-33 154
18 TraesCS4A01G387000 chr1D 92.453 106 8 0 2126 2231 365916474 365916369 1.120000e-32 152
19 TraesCS4A01G387000 chr6D 91.262 103 9 0 2126 2228 413029633 413029735 2.430000e-29 141
20 TraesCS4A01G387000 chrUn 90.476 105 9 1 1729 1833 2105504 2105401 3.150000e-28 137
21 TraesCS4A01G387000 chr1B 87.705 122 10 3 1712 1833 84365477 84365593 3.150000e-28 137
22 TraesCS4A01G387000 chr6B 97.260 73 2 0 6401 6473 694663119 694663191 2.450000e-24 124
23 TraesCS4A01G387000 chr2D 87.273 110 7 2 2126 2228 624271412 624271521 1.140000e-22 119
24 TraesCS4A01G387000 chr2D 94.444 72 4 0 6402 6473 399440387 399440316 1.910000e-20 111
25 TraesCS4A01G387000 chr1A 94.667 75 4 0 6399 6473 448917991 448917917 4.100000e-22 117
26 TraesCS4A01G387000 chr1A 98.485 66 1 0 6408 6473 561767312 561767377 4.100000e-22 117
27 TraesCS4A01G387000 chr3A 95.775 71 3 0 6403 6473 660901709 660901779 1.470000e-21 115
28 TraesCS4A01G387000 chr6A 97.015 67 2 0 6407 6473 6392974 6393040 5.300000e-21 113
29 TraesCS4A01G387000 chr7B 85.437 103 8 1 2136 2231 94991950 94991848 4.130000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G387000 chr4A 664483166 664489638 6472 True 11954.000000 11954 100.000000 1 6473 1 chr4A.!!$R2 6472
1 TraesCS4A01G387000 chr7A 52966461 52972702 6241 True 4318.000000 8399 86.603500 30 6195 2 chr7A.!!$R1 6165
2 TraesCS4A01G387000 chr7D 49883095 49889184 6089 True 3018.333333 6532 90.935333 1 6077 3 chr7D.!!$R1 6076
3 TraesCS4A01G387000 chr4B 193993191 193993937 746 True 322.000000 405 84.736000 885 1725 2 chr4B.!!$R2 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 807 0.737367 ATGTCACACCACATCGCGAG 60.737 55.000 16.66 9.51 30.76 5.03 F
829 863 0.877213 GTACAACCACCGTGCTTCGT 60.877 55.000 0.00 0.00 37.94 3.85 F
1324 1367 1.152756 AGGTTTTGTGCGCCCTCTT 60.153 52.632 4.18 0.00 0.00 2.85 F
1492 1535 2.088423 GTAAACAATGATGACCGGGCA 58.912 47.619 15.46 15.46 0.00 5.36 F
2482 2542 3.266510 TGCTGGCATGTCTACCTAAAG 57.733 47.619 0.00 0.00 0.00 1.85 F
3919 4008 1.077716 ATGCAGAAACCCCTACCGC 60.078 57.895 0.00 0.00 0.00 5.68 F
4930 5034 0.606673 GCTGAAACTGAGTGTCCCCC 60.607 60.000 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2482 2542 1.555967 ACCATGGGCATGTACCAAAC 58.444 50.000 18.09 0.00 42.17 2.93 R
2782 2852 5.597806 CATGGACTGATAAAAATGCTGCAT 58.402 37.500 9.81 9.81 0.00 3.96 R
2839 2909 2.927004 TGCTCCGTTCGAAAGCATT 58.073 47.368 16.94 0.00 40.91 3.56 R
3454 3525 2.859165 TTCCAACTGCTTCAGGGTAG 57.141 50.000 0.00 0.00 35.51 3.18 R
3996 4086 1.077169 AGTGTTTGGGGAAGGGGAATC 59.923 52.381 0.00 0.00 0.00 2.52 R
5373 5478 2.047274 ATGACTTGCGTGACCGGG 60.047 61.111 6.32 0.00 33.68 5.73 R
6291 6509 0.033781 ACTTGCGTGCCCGTTACTAA 59.966 50.000 0.00 0.00 36.15 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.339093 CTCCCCCAACTCCCACCC 61.339 72.222 0.00 0.00 0.00 4.61
21 22 4.209620 TCCCCCAACTCCCACCCA 62.210 66.667 0.00 0.00 0.00 4.51
98 104 4.783621 TGCTGCGGTGATGCCTCC 62.784 66.667 0.00 0.00 34.25 4.30
149 155 2.907897 CTTCGGCACTTCCCCGCTAG 62.908 65.000 0.00 0.00 45.19 3.42
180 186 2.808958 CGGCCGTAATTGCTCACCG 61.809 63.158 19.50 4.83 0.00 4.94
234 240 4.221422 GCGAGCGGCTGGGACATA 62.221 66.667 7.50 0.00 38.20 2.29
252 258 2.902069 TAGGGATTGGGGGTCCGGTC 62.902 65.000 0.00 0.00 36.58 4.79
262 268 1.292541 GGTCCGGTCTTGGTCAGTC 59.707 63.158 0.00 0.00 0.00 3.51
263 269 1.469335 GGTCCGGTCTTGGTCAGTCA 61.469 60.000 0.00 0.00 0.00 3.41
287 293 5.406649 AGATTTACTCGCTTCTGAAGACTG 58.593 41.667 21.06 11.05 0.00 3.51
290 296 1.342819 ACTCGCTTCTGAAGACTGCTT 59.657 47.619 21.06 0.00 36.96 3.91
305 311 4.639310 AGACTGCTTGCTAGGATTTCAATG 59.361 41.667 0.00 0.00 0.00 2.82
306 312 3.698040 ACTGCTTGCTAGGATTTCAATGG 59.302 43.478 0.00 0.00 0.00 3.16
308 314 3.696051 TGCTTGCTAGGATTTCAATGGAC 59.304 43.478 0.00 0.00 0.00 4.02
312 318 5.902613 TGCTAGGATTTCAATGGACAAAG 57.097 39.130 0.00 0.00 0.00 2.77
342 352 1.302993 TAGGCCAACTTGGTTCCGC 60.303 57.895 5.01 0.00 40.46 5.54
450 484 8.010733 TGGATCCATTAATTTCCTGATTGAAC 57.989 34.615 11.44 0.00 0.00 3.18
550 584 2.746472 GCCTCTCTGTGGTGTTTCAGTT 60.746 50.000 0.00 0.00 33.89 3.16
591 625 3.154710 CTGATGAGCAATGGCCACATAT 58.845 45.455 8.16 0.00 42.56 1.78
620 654 1.561769 ATCCCCGAACCTGTGATGCA 61.562 55.000 0.00 0.00 0.00 3.96
661 695 4.540359 ATTTGGTGGTGGTCATGATTTG 57.460 40.909 0.00 0.00 0.00 2.32
663 697 1.185315 GGTGGTGGTCATGATTTGGG 58.815 55.000 0.00 0.00 0.00 4.12
664 698 1.272425 GGTGGTGGTCATGATTTGGGA 60.272 52.381 0.00 0.00 0.00 4.37
674 708 6.822676 TGGTCATGATTTGGGATTTTATTTGC 59.177 34.615 0.00 0.00 0.00 3.68
677 711 5.413309 TGATTTGGGATTTTATTTGCGGT 57.587 34.783 0.00 0.00 0.00 5.68
693 727 1.676057 CGGTTCGCGCAAATAAAACA 58.324 45.000 8.75 0.00 0.00 2.83
695 729 2.657184 GGTTCGCGCAAATAAAACACT 58.343 42.857 8.75 0.00 0.00 3.55
756 790 0.890683 GCCTGAGTTTGGTTCCCATG 59.109 55.000 0.00 0.00 31.53 3.66
770 804 1.647545 CCCATGTCACACCACATCGC 61.648 60.000 0.00 0.00 34.60 4.58
773 807 0.737367 ATGTCACACCACATCGCGAG 60.737 55.000 16.66 9.51 30.76 5.03
820 854 3.942748 TGTTCTTGAACTGTACAACCACC 59.057 43.478 13.65 0.00 0.00 4.61
829 863 0.877213 GTACAACCACCGTGCTTCGT 60.877 55.000 0.00 0.00 37.94 3.85
840 874 2.495939 CGTGCTTCGTTTATTCTGTGC 58.504 47.619 0.00 0.00 34.52 4.57
847 881 4.840401 TCGTTTATTCTGTGCATCTTCG 57.160 40.909 0.00 0.00 0.00 3.79
892 926 6.524101 TGTTTTAAGGCATTAGATGGGAAC 57.476 37.500 0.00 0.00 0.00 3.62
905 939 3.586618 AGATGGGAACTCTTCTTCAGCTT 59.413 43.478 0.00 0.00 30.25 3.74
935 972 9.489690 GTTCGGTTTATTTAAATTTTTCGTTCG 57.510 29.630 5.91 1.60 0.00 3.95
956 993 3.364366 CGCCATTTGAAGAGTGAAGACAC 60.364 47.826 0.00 0.00 46.24 3.67
957 994 3.057946 GCCATTTGAAGAGTGAAGACACC 60.058 47.826 0.00 0.00 46.99 4.16
1023 1064 2.223805 GGCTGCTGCTGTAAAAACAAGT 60.224 45.455 15.64 0.00 39.59 3.16
1098 1139 6.309494 TGTTTTTACATGGATCTACTCGTTCG 59.691 38.462 0.00 0.00 0.00 3.95
1165 1208 4.056050 ACTGTGTGTTAAAGCTACTTCCG 58.944 43.478 0.00 0.00 0.00 4.30
1324 1367 1.152756 AGGTTTTGTGCGCCCTCTT 60.153 52.632 4.18 0.00 0.00 2.85
1341 1384 5.776744 CCCTCTTTTCTTTGTCATCTTTGG 58.223 41.667 0.00 0.00 0.00 3.28
1416 1459 3.475566 TGCCACCTATTATCACTCTGC 57.524 47.619 0.00 0.00 0.00 4.26
1474 1517 5.873146 TGGATATGTGGAATGGTTACGTA 57.127 39.130 0.00 0.00 0.00 3.57
1492 1535 2.088423 GTAAACAATGATGACCGGGCA 58.912 47.619 15.46 15.46 0.00 5.36
1605 1648 4.467769 CCATCATTAAGCTGGGTGAGATT 58.532 43.478 0.00 0.00 33.83 2.40
1891 1936 7.630242 AATGGAGTAGTCATAAATGTTGTGG 57.370 36.000 0.00 0.00 0.00 4.17
2482 2542 3.266510 TGCTGGCATGTCTACCTAAAG 57.733 47.619 0.00 0.00 0.00 1.85
2782 2852 6.951062 TGGCGTTATCATTTGAAATATCCA 57.049 33.333 0.00 0.00 0.00 3.41
2789 2859 5.855740 TCATTTGAAATATCCATGCAGCA 57.144 34.783 0.00 0.00 0.00 4.41
2839 2909 9.053840 TCGTAGATATGTTTTGTGGTTTTGTTA 57.946 29.630 0.00 0.00 0.00 2.41
3460 3531 6.697641 TGTCAGTCCTTTATTTTCTACCCT 57.302 37.500 0.00 0.00 0.00 4.34
3593 3666 5.845391 AGTTACAAGCTGAGAGGAGATAC 57.155 43.478 0.00 0.00 0.00 2.24
3595 3668 3.006112 ACAAGCTGAGAGGAGATACGA 57.994 47.619 0.00 0.00 0.00 3.43
3866 3955 3.621268 TGAGAATTAAATGGAACCTCGCG 59.379 43.478 0.00 0.00 0.00 5.87
3891 3980 3.056107 TGTTCGAACCCAGATAGGTGAAG 60.056 47.826 24.78 0.00 40.05 3.02
3919 4008 1.077716 ATGCAGAAACCCCTACCGC 60.078 57.895 0.00 0.00 0.00 5.68
3920 4009 1.562672 ATGCAGAAACCCCTACCGCT 61.563 55.000 0.00 0.00 0.00 5.52
3943 4032 6.017400 TCATCTTGTTTCATCTTGCTTTCC 57.983 37.500 0.00 0.00 0.00 3.13
3961 4050 6.605995 TGCTTTCCAGATTCATCATCTTGAAT 59.394 34.615 0.00 0.00 46.39 2.57
3996 4086 4.937696 TGTTCGTGCACAATACCTATTG 57.062 40.909 18.64 3.87 46.41 1.90
4081 4171 5.010012 AGTTCCAAAGACCATTGACAATGAC 59.990 40.000 26.36 19.12 41.46 3.06
4173 4263 5.502079 TGCCTATATAGAGGTAGACTGCTC 58.498 45.833 14.79 0.00 39.02 4.26
4174 4264 5.251932 TGCCTATATAGAGGTAGACTGCTCT 59.748 44.000 14.79 0.00 39.02 4.09
4198 4298 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4199 4299 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4200 4300 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4201 4301 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4202 4302 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
4203 4303 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
4204 4304 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
4205 4305 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
4206 4306 3.051803 TCTCTCTCTCTCTCTCTCCCTCT 60.052 52.174 0.00 0.00 0.00 3.69
4207 4307 3.309296 TCTCTCTCTCTCTCTCCCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4208 4308 3.051803 TCTCTCTCTCTCTCTCCCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4209 4309 3.309296 TCTCTCTCTCTCTCCCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4210 4310 3.051803 TCTCTCTCTCTCTCCCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4211 4311 3.309296 TCTCTCTCTCTCCCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4212 4312 3.051803 TCTCTCTCTCTCCCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4213 4313 3.309296 TCTCTCTCTCCCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4214 4314 3.051803 TCTCTCTCTCCCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4215 4315 3.309296 TCTCTCTCCCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4216 4316 3.051803 TCTCTCTCCCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4217 4317 3.309296 TCTCTCCCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4218 4318 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4219 4319 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4220 4320 3.051803 TCTCCCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4221 4321 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4222 4322 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4223 4323 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
4231 4331 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
4241 4341 4.947388 TCTCTCTCTCTCTTTCTAAGCCAC 59.053 45.833 0.00 0.00 0.00 5.01
4409 4511 2.210116 AGGTTCGTAAACACTGCACTG 58.790 47.619 0.00 0.00 37.10 3.66
4596 4699 3.583806 CAGGACAAGTAAGTGAGCTCAG 58.416 50.000 18.89 5.95 0.00 3.35
4597 4700 3.006323 CAGGACAAGTAAGTGAGCTCAGT 59.994 47.826 18.89 18.75 0.00 3.41
4814 4917 8.839310 ATCTTATAATGTACATGCTGTCCTTC 57.161 34.615 9.63 0.00 0.00 3.46
4889 4992 4.606457 TTCGTCTTACCGTACTAGCTTC 57.394 45.455 0.00 0.00 0.00 3.86
4930 5034 0.606673 GCTGAAACTGAGTGTCCCCC 60.607 60.000 0.00 0.00 0.00 5.40
4973 5077 4.399618 TCTCTGTTCCATTCTAGAAGTCGG 59.600 45.833 11.53 11.04 0.00 4.79
4981 5085 3.526931 TTCTAGAAGTCGGCAATGGAG 57.473 47.619 0.00 0.00 0.00 3.86
4994 5098 3.065925 GGCAATGGAGAGCATTTAGTGAC 59.934 47.826 0.00 0.00 0.00 3.67
4996 5100 4.437930 GCAATGGAGAGCATTTAGTGACAC 60.438 45.833 0.00 0.00 0.00 3.67
4997 5101 4.833478 ATGGAGAGCATTTAGTGACACT 57.167 40.909 13.68 13.68 0.00 3.55
4998 5102 3.930336 TGGAGAGCATTTAGTGACACTG 58.070 45.455 18.58 3.26 0.00 3.66
4999 5103 3.578282 TGGAGAGCATTTAGTGACACTGA 59.422 43.478 18.58 7.22 0.00 3.41
5000 5104 4.223700 TGGAGAGCATTTAGTGACACTGAT 59.776 41.667 18.58 9.14 0.00 2.90
5001 5105 5.181748 GGAGAGCATTTAGTGACACTGATT 58.818 41.667 18.58 3.68 0.00 2.57
5002 5106 6.070824 TGGAGAGCATTTAGTGACACTGATTA 60.071 38.462 18.58 0.00 0.00 1.75
5003 5107 6.256757 GGAGAGCATTTAGTGACACTGATTAC 59.743 42.308 18.58 5.15 0.00 1.89
5004 5108 6.701340 AGAGCATTTAGTGACACTGATTACA 58.299 36.000 18.58 0.00 0.00 2.41
5010 5114 8.598924 CATTTAGTGACACTGATTACACTGATC 58.401 37.037 18.58 0.00 42.37 2.92
5183 5287 3.821841 CTTGGACAAAATGCCGTAAGTC 58.178 45.455 0.00 0.00 0.00 3.01
5200 5304 5.277779 CGTAAGTCAAATCAGTTTCCTGCAA 60.278 40.000 0.00 0.00 38.66 4.08
5227 5331 6.192360 CCTTGCGGTTTAATTAATCTTCTCG 58.808 40.000 0.00 0.00 0.00 4.04
5254 5359 1.549170 AGACGTACAGTTCCCCATGTC 59.451 52.381 0.00 0.00 0.00 3.06
5340 5445 2.040544 CGGGTTCAGTGGCATCACC 61.041 63.158 0.00 0.00 44.64 4.02
5373 5478 3.562505 CAACACTCACTACGTGTACCTC 58.437 50.000 0.00 0.00 44.25 3.85
5479 5584 1.079750 GACTTCCGCTGACCACCTC 60.080 63.158 0.00 0.00 0.00 3.85
5481 5586 1.216710 CTTCCGCTGACCACCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
5537 5642 0.827368 GGTGTCAAGTTTTTGCCCCA 59.173 50.000 0.00 0.00 34.21 4.96
5685 5798 9.602568 TCAACTTTGTAACCCCTTTTATTTTTC 57.397 29.630 0.00 0.00 0.00 2.29
5698 5811 0.890683 ATTTTTCCCTTGCTCAGCCG 59.109 50.000 0.00 0.00 0.00 5.52
5781 5894 8.178964 TCGGTATTTAGATGTTCAAAATTTCCG 58.821 33.333 0.00 12.59 38.58 4.30
5802 5915 8.604640 TTCCGTTGTGTAATCAATGTAGTTTA 57.395 30.769 0.00 0.00 33.87 2.01
5810 5923 8.458843 GTGTAATCAATGTAGTTTATGCCTTGT 58.541 33.333 0.00 0.00 0.00 3.16
5811 5924 9.674068 TGTAATCAATGTAGTTTATGCCTTGTA 57.326 29.630 0.00 0.00 0.00 2.41
5812 5925 9.931210 GTAATCAATGTAGTTTATGCCTTGTAC 57.069 33.333 0.00 0.00 0.00 2.90
5849 5962 4.960469 AGTCATTTATACTCCCTCCGTTCA 59.040 41.667 0.00 0.00 0.00 3.18
5850 5963 5.424252 AGTCATTTATACTCCCTCCGTTCAA 59.576 40.000 0.00 0.00 0.00 2.69
5854 5967 7.832187 TCATTTATACTCCCTCCGTTCAAAAAT 59.168 33.333 0.00 0.00 0.00 1.82
5855 5968 9.116067 CATTTATACTCCCTCCGTTCAAAAATA 57.884 33.333 0.00 0.00 0.00 1.40
5857 5970 8.726870 TTATACTCCCTCCGTTCAAAAATAAG 57.273 34.615 0.00 0.00 0.00 1.73
5858 5971 4.981812 ACTCCCTCCGTTCAAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
5859 5972 4.760204 ACTCCCTCCGTTCAAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
5860 5973 3.504520 TCCCTCCGTTCAAAAATAAGTGC 59.495 43.478 0.00 0.00 0.00 4.40
5861 5974 3.366985 CCCTCCGTTCAAAAATAAGTGCC 60.367 47.826 0.00 0.00 0.00 5.01
5862 5975 3.254657 CCTCCGTTCAAAAATAAGTGCCA 59.745 43.478 0.00 0.00 0.00 4.92
5864 5977 4.138290 TCCGTTCAAAAATAAGTGCCAGA 58.862 39.130 0.00 0.00 0.00 3.86
5944 6139 7.375230 TGAAAATTTTCAATTTCGACAGTCG 57.625 32.000 27.22 17.33 43.62 4.18
5949 6146 1.341852 TCAATTTCGACAGTCGGTGGA 59.658 47.619 22.66 9.56 40.88 4.02
5983 6180 2.325583 TTTTGTCACTCTGGAACGCT 57.674 45.000 0.00 0.00 0.00 5.07
6008 6205 2.160822 CGGATAGCATGGAAGTCTGG 57.839 55.000 0.00 0.00 0.00 3.86
6016 6213 2.288395 GCATGGAAGTCTGGGTGTTTTG 60.288 50.000 0.00 0.00 0.00 2.44
6017 6214 1.398692 TGGAAGTCTGGGTGTTTTGC 58.601 50.000 0.00 0.00 0.00 3.68
6019 6216 1.692411 GAAGTCTGGGTGTTTTGCCT 58.308 50.000 0.00 0.00 0.00 4.75
6055 6252 5.841810 TCATTTTGACCATTTGACCTGAAC 58.158 37.500 0.00 0.00 0.00 3.18
6073 6270 3.007614 TGAACTAGTGGGCTAAAGTCACC 59.992 47.826 0.00 0.00 32.29 4.02
6090 6287 0.179004 ACCCAATTTGCGTCCAGTCA 60.179 50.000 0.00 0.00 0.00 3.41
6104 6301 4.398319 GTCCAGTCAAGATCTCCCAAAAA 58.602 43.478 0.00 0.00 0.00 1.94
6105 6302 5.012893 GTCCAGTCAAGATCTCCCAAAAAT 58.987 41.667 0.00 0.00 0.00 1.82
6120 6334 5.819901 TCCCAAAAATTTTGTGCGAGAAATT 59.180 32.000 16.15 0.00 37.12 1.82
6123 6337 7.585936 CCCAAAAATTTTGTGCGAGAAATTAAC 59.414 33.333 16.15 0.00 35.14 2.01
6164 6382 0.107361 TCTCTCGCCTGTCCGATGTA 60.107 55.000 0.00 0.00 36.54 2.29
6166 6384 0.454600 TCTCGCCTGTCCGATGTAAC 59.545 55.000 0.00 0.00 36.54 2.50
6167 6385 0.866061 CTCGCCTGTCCGATGTAACG 60.866 60.000 0.00 0.00 36.54 3.18
6168 6386 1.153901 CGCCTGTCCGATGTAACGT 60.154 57.895 0.00 0.00 0.00 3.99
6169 6387 0.734942 CGCCTGTCCGATGTAACGTT 60.735 55.000 5.88 5.88 0.00 3.99
6198 6416 6.788243 TGCACAATAGCAGACATTCTTATTG 58.212 36.000 6.25 6.25 40.11 1.90
6199 6417 6.183360 TGCACAATAGCAGACATTCTTATTGG 60.183 38.462 10.34 3.95 40.11 3.16
6200 6418 6.732154 CACAATAGCAGACATTCTTATTGGG 58.268 40.000 10.34 4.86 34.14 4.12
6201 6419 6.319658 CACAATAGCAGACATTCTTATTGGGT 59.680 38.462 10.34 0.00 34.14 4.51
6202 6420 6.319658 ACAATAGCAGACATTCTTATTGGGTG 59.680 38.462 10.34 0.00 34.14 4.61
6203 6421 4.574674 AGCAGACATTCTTATTGGGTGA 57.425 40.909 0.00 0.00 0.00 4.02
6204 6422 4.922206 AGCAGACATTCTTATTGGGTGAA 58.078 39.130 0.00 0.00 0.00 3.18
6205 6423 4.946157 AGCAGACATTCTTATTGGGTGAAG 59.054 41.667 0.00 0.00 0.00 3.02
6206 6424 4.943705 GCAGACATTCTTATTGGGTGAAGA 59.056 41.667 0.00 0.00 0.00 2.87
6207 6425 5.065731 GCAGACATTCTTATTGGGTGAAGAG 59.934 44.000 0.00 0.00 33.38 2.85
6208 6426 6.409704 CAGACATTCTTATTGGGTGAAGAGA 58.590 40.000 0.00 0.00 33.38 3.10
6209 6427 6.314896 CAGACATTCTTATTGGGTGAAGAGAC 59.685 42.308 0.00 0.00 33.38 3.36
6210 6428 5.501156 ACATTCTTATTGGGTGAAGAGACC 58.499 41.667 0.00 0.00 33.38 3.85
6211 6429 5.014123 ACATTCTTATTGGGTGAAGAGACCA 59.986 40.000 0.00 0.00 37.80 4.02
6212 6430 5.779241 TTCTTATTGGGTGAAGAGACCAT 57.221 39.130 0.00 0.00 37.80 3.55
6213 6431 6.884472 TTCTTATTGGGTGAAGAGACCATA 57.116 37.500 0.00 0.00 37.80 2.74
6214 6432 6.235231 TCTTATTGGGTGAAGAGACCATAC 57.765 41.667 0.00 0.00 37.80 2.39
6215 6433 3.543680 ATTGGGTGAAGAGACCATACG 57.456 47.619 0.00 0.00 37.80 3.06
6216 6434 2.225382 TGGGTGAAGAGACCATACGA 57.775 50.000 0.00 0.00 37.80 3.43
6217 6435 2.747177 TGGGTGAAGAGACCATACGAT 58.253 47.619 0.00 0.00 37.80 3.73
6218 6436 3.905968 TGGGTGAAGAGACCATACGATA 58.094 45.455 0.00 0.00 37.80 2.92
6219 6437 3.889538 TGGGTGAAGAGACCATACGATAG 59.110 47.826 0.00 0.00 37.80 2.08
6220 6438 4.142790 GGGTGAAGAGACCATACGATAGA 58.857 47.826 0.00 0.00 37.80 1.98
6221 6439 4.583489 GGGTGAAGAGACCATACGATAGAA 59.417 45.833 0.00 0.00 37.80 2.10
6222 6440 5.068723 GGGTGAAGAGACCATACGATAGAAA 59.931 44.000 0.00 0.00 37.80 2.52
6223 6441 6.210078 GGTGAAGAGACCATACGATAGAAAG 58.790 44.000 0.00 0.00 35.88 2.62
6224 6442 6.183360 GGTGAAGAGACCATACGATAGAAAGT 60.183 42.308 0.00 0.00 35.88 2.66
6225 6443 7.259161 GTGAAGAGACCATACGATAGAAAGTT 58.741 38.462 0.00 0.00 41.38 2.66
6226 6444 7.760340 GTGAAGAGACCATACGATAGAAAGTTT 59.240 37.037 0.00 0.00 41.38 2.66
6227 6445 8.311836 TGAAGAGACCATACGATAGAAAGTTTT 58.688 33.333 0.00 0.00 41.38 2.43
6228 6446 9.152595 GAAGAGACCATACGATAGAAAGTTTTT 57.847 33.333 0.00 0.00 41.38 1.94
6230 6448 9.804758 AGAGACCATACGATAGAAAGTTTTTAG 57.195 33.333 0.00 0.00 41.38 1.85
6231 6449 9.798994 GAGACCATACGATAGAAAGTTTTTAGA 57.201 33.333 0.00 0.00 41.38 2.10
6239 6457 8.504815 ACGATAGAAAGTTTTTAGAAGAAAGGC 58.495 33.333 0.00 0.00 41.38 4.35
6240 6458 8.504005 CGATAGAAAGTTTTTAGAAGAAAGGCA 58.496 33.333 0.00 0.00 39.76 4.75
6241 6459 9.613957 GATAGAAAGTTTTTAGAAGAAAGGCAC 57.386 33.333 0.00 0.00 0.00 5.01
6242 6460 7.404671 AGAAAGTTTTTAGAAGAAAGGCACA 57.595 32.000 0.00 0.00 0.00 4.57
6243 6461 7.836842 AGAAAGTTTTTAGAAGAAAGGCACAA 58.163 30.769 0.00 0.00 0.00 3.33
6244 6462 7.976175 AGAAAGTTTTTAGAAGAAAGGCACAAG 59.024 33.333 0.00 0.00 0.00 3.16
6245 6463 5.592054 AGTTTTTAGAAGAAAGGCACAAGC 58.408 37.500 0.00 0.00 41.10 4.01
6246 6464 5.127031 AGTTTTTAGAAGAAAGGCACAAGCA 59.873 36.000 0.00 0.00 44.61 3.91
6247 6465 5.590530 TTTTAGAAGAAAGGCACAAGCAA 57.409 34.783 0.00 0.00 44.61 3.91
6248 6466 4.568152 TTAGAAGAAAGGCACAAGCAAC 57.432 40.909 0.00 0.00 44.61 4.17
6249 6467 1.334869 AGAAGAAAGGCACAAGCAACG 59.665 47.619 0.00 0.00 44.61 4.10
6250 6468 0.249031 AAGAAAGGCACAAGCAACGC 60.249 50.000 0.00 0.00 44.61 4.84
6251 6469 1.103398 AGAAAGGCACAAGCAACGCT 61.103 50.000 0.00 0.00 44.61 5.07
6252 6470 0.661483 GAAAGGCACAAGCAACGCTC 60.661 55.000 0.00 0.00 44.61 5.03
6253 6471 2.392613 AAAGGCACAAGCAACGCTCG 62.393 55.000 0.00 0.00 44.61 5.03
6254 6472 4.389576 GGCACAAGCAACGCTCGG 62.390 66.667 0.00 0.00 44.61 4.63
6256 6474 3.349006 CACAAGCAACGCTCGGCT 61.349 61.111 0.00 0.00 43.46 5.52
6260 6478 3.562635 AGCAACGCTCGGCTTTAC 58.437 55.556 0.00 0.00 36.92 2.01
6261 6479 2.095843 GCAACGCTCGGCTTTACG 59.904 61.111 0.00 0.00 0.00 3.18
6262 6480 2.095843 CAACGCTCGGCTTTACGC 59.904 61.111 0.00 0.00 38.13 4.42
6275 6493 3.782046 GCTTTACGCCAGAAGATCTACA 58.218 45.455 0.00 0.00 0.00 2.74
6276 6494 3.799420 GCTTTACGCCAGAAGATCTACAG 59.201 47.826 0.00 0.00 0.00 2.74
6277 6495 4.440250 GCTTTACGCCAGAAGATCTACAGA 60.440 45.833 0.00 0.00 0.00 3.41
6278 6496 4.902443 TTACGCCAGAAGATCTACAGAG 57.098 45.455 0.00 0.00 0.00 3.35
6279 6497 3.006112 ACGCCAGAAGATCTACAGAGA 57.994 47.619 0.00 0.00 35.71 3.10
6280 6498 3.357203 ACGCCAGAAGATCTACAGAGAA 58.643 45.455 0.00 0.00 34.61 2.87
6281 6499 3.380004 ACGCCAGAAGATCTACAGAGAAG 59.620 47.826 0.00 0.00 34.61 2.85
6282 6500 3.380004 CGCCAGAAGATCTACAGAGAAGT 59.620 47.826 0.00 0.00 34.61 3.01
6283 6501 4.681744 GCCAGAAGATCTACAGAGAAGTG 58.318 47.826 0.00 0.00 34.61 3.16
6284 6502 4.159506 GCCAGAAGATCTACAGAGAAGTGT 59.840 45.833 0.00 0.00 34.61 3.55
6285 6503 5.337169 GCCAGAAGATCTACAGAGAAGTGTT 60.337 44.000 0.00 0.00 34.61 3.32
6286 6504 6.696411 CCAGAAGATCTACAGAGAAGTGTTT 58.304 40.000 0.00 0.00 34.61 2.83
6287 6505 7.158021 CCAGAAGATCTACAGAGAAGTGTTTT 58.842 38.462 0.00 0.00 34.61 2.43
6288 6506 7.659390 CCAGAAGATCTACAGAGAAGTGTTTTT 59.341 37.037 0.00 0.00 34.61 1.94
6289 6507 8.707839 CAGAAGATCTACAGAGAAGTGTTTTTC 58.292 37.037 0.00 0.00 34.61 2.29
6290 6508 8.424918 AGAAGATCTACAGAGAAGTGTTTTTCA 58.575 33.333 0.00 0.00 34.61 2.69
6291 6509 9.213799 GAAGATCTACAGAGAAGTGTTTTTCAT 57.786 33.333 0.00 0.00 34.61 2.57
6292 6510 9.566432 AAGATCTACAGAGAAGTGTTTTTCATT 57.434 29.630 0.00 0.00 34.61 2.57
6299 6517 8.548721 ACAGAGAAGTGTTTTTCATTAGTAACG 58.451 33.333 0.00 0.00 0.00 3.18
6300 6518 8.009974 CAGAGAAGTGTTTTTCATTAGTAACGG 58.990 37.037 0.00 0.00 0.00 4.44
6301 6519 7.172703 AGAGAAGTGTTTTTCATTAGTAACGGG 59.827 37.037 0.00 0.00 0.00 5.28
6302 6520 5.366829 AGTGTTTTTCATTAGTAACGGGC 57.633 39.130 0.00 0.00 0.00 6.13
6303 6521 4.822896 AGTGTTTTTCATTAGTAACGGGCA 59.177 37.500 0.00 0.00 0.00 5.36
6304 6522 4.913345 GTGTTTTTCATTAGTAACGGGCAC 59.087 41.667 0.00 0.00 0.00 5.01
6306 6524 1.361793 TTCATTAGTAACGGGCACGC 58.638 50.000 9.12 0.00 46.04 5.34
6307 6525 0.246910 TCATTAGTAACGGGCACGCA 59.753 50.000 9.12 0.00 46.04 5.24
6308 6526 1.080298 CATTAGTAACGGGCACGCAA 58.920 50.000 9.12 0.00 46.04 4.85
6309 6527 1.062002 CATTAGTAACGGGCACGCAAG 59.938 52.381 9.12 0.00 46.04 4.01
6323 6541 2.509052 CGCAAGTGATTCGGGATAGA 57.491 50.000 0.00 0.00 0.00 1.98
6324 6542 2.398498 CGCAAGTGATTCGGGATAGAG 58.602 52.381 0.00 0.00 0.00 2.43
6325 6543 2.034685 CGCAAGTGATTCGGGATAGAGA 59.965 50.000 0.00 0.00 0.00 3.10
6326 6544 3.305676 CGCAAGTGATTCGGGATAGAGAT 60.306 47.826 0.00 0.00 0.00 2.75
6327 6545 4.241681 GCAAGTGATTCGGGATAGAGATC 58.758 47.826 0.00 0.00 0.00 2.75
6345 6563 9.771534 ATAGAGATCCTTCTTAAATACAACAGC 57.228 33.333 0.00 0.00 30.30 4.40
6346 6564 6.758886 AGAGATCCTTCTTAAATACAACAGCG 59.241 38.462 0.00 0.00 30.30 5.18
6347 6565 4.939509 TCCTTCTTAAATACAACAGCGC 57.060 40.909 0.00 0.00 0.00 5.92
6348 6566 3.369756 TCCTTCTTAAATACAACAGCGCG 59.630 43.478 0.00 0.00 0.00 6.86
6349 6567 3.369756 CCTTCTTAAATACAACAGCGCGA 59.630 43.478 12.10 0.00 0.00 5.87
6350 6568 3.984018 TCTTAAATACAACAGCGCGAC 57.016 42.857 12.10 0.04 0.00 5.19
6351 6569 2.669434 TCTTAAATACAACAGCGCGACC 59.331 45.455 12.10 0.00 0.00 4.79
6352 6570 2.373540 TAAATACAACAGCGCGACCT 57.626 45.000 12.10 0.00 0.00 3.85
6353 6571 0.796312 AAATACAACAGCGCGACCTG 59.204 50.000 12.10 11.75 38.78 4.00
6354 6572 1.635663 AATACAACAGCGCGACCTGC 61.636 55.000 12.10 0.00 36.29 4.85
6355 6573 2.507110 ATACAACAGCGCGACCTGCT 62.507 55.000 12.10 0.00 45.31 4.24
6356 6574 2.709125 TACAACAGCGCGACCTGCTT 62.709 55.000 12.10 3.18 41.72 3.91
6357 6575 2.591715 AACAGCGCGACCTGCTTT 60.592 55.556 12.10 0.00 41.72 3.51
6358 6576 2.607892 AACAGCGCGACCTGCTTTC 61.608 57.895 12.10 0.00 41.72 2.62
6359 6577 3.043713 CAGCGCGACCTGCTTTCA 61.044 61.111 12.10 0.00 41.72 2.69
6360 6578 3.044305 AGCGCGACCTGCTTTCAC 61.044 61.111 12.10 0.00 40.48 3.18
6361 6579 3.044305 GCGCGACCTGCTTTCACT 61.044 61.111 12.10 0.00 43.27 3.41
6362 6580 3.016474 GCGCGACCTGCTTTCACTC 62.016 63.158 12.10 0.00 43.27 3.51
6363 6581 2.720758 CGCGACCTGCTTTCACTCG 61.721 63.158 0.00 0.00 43.27 4.18
6364 6582 2.383527 GCGACCTGCTTTCACTCGG 61.384 63.158 0.00 0.00 41.73 4.63
6365 6583 1.289066 CGACCTGCTTTCACTCGGA 59.711 57.895 0.00 0.00 0.00 4.55
6366 6584 0.734253 CGACCTGCTTTCACTCGGAG 60.734 60.000 2.83 2.83 0.00 4.63
6367 6585 1.004440 ACCTGCTTTCACTCGGAGC 60.004 57.895 4.58 0.00 36.95 4.70
6368 6586 2.097038 CCTGCTTTCACTCGGAGCG 61.097 63.158 4.58 0.00 39.23 5.03
6369 6587 2.734673 CTGCTTTCACTCGGAGCGC 61.735 63.158 4.58 0.00 39.23 5.92
6370 6588 3.491652 GCTTTCACTCGGAGCGCC 61.492 66.667 2.29 0.00 0.00 6.53
6371 6589 2.262915 CTTTCACTCGGAGCGCCT 59.737 61.111 2.29 0.00 0.00 5.52
6372 6590 1.511305 CTTTCACTCGGAGCGCCTA 59.489 57.895 2.29 0.00 0.00 3.93
6373 6591 0.526524 CTTTCACTCGGAGCGCCTAG 60.527 60.000 2.29 6.47 33.35 3.02
6374 6592 0.963856 TTTCACTCGGAGCGCCTAGA 60.964 55.000 15.05 0.00 31.65 2.43
6375 6593 1.654954 TTCACTCGGAGCGCCTAGAC 61.655 60.000 15.05 0.00 31.65 2.59
6376 6594 2.045242 ACTCGGAGCGCCTAGACA 60.045 61.111 15.05 0.00 31.65 3.41
6377 6595 1.454111 ACTCGGAGCGCCTAGACAT 60.454 57.895 15.05 0.00 31.65 3.06
6378 6596 0.179026 ACTCGGAGCGCCTAGACATA 60.179 55.000 15.05 0.00 31.65 2.29
6379 6597 0.952280 CTCGGAGCGCCTAGACATAA 59.048 55.000 2.29 0.00 0.00 1.90
6380 6598 1.337071 CTCGGAGCGCCTAGACATAAA 59.663 52.381 2.29 0.00 0.00 1.40
6381 6599 1.752498 TCGGAGCGCCTAGACATAAAA 59.248 47.619 2.29 0.00 0.00 1.52
6382 6600 2.128035 CGGAGCGCCTAGACATAAAAG 58.872 52.381 2.29 0.00 0.00 2.27
6383 6601 2.484889 GGAGCGCCTAGACATAAAAGG 58.515 52.381 2.29 0.00 0.00 3.11
6384 6602 2.102588 GGAGCGCCTAGACATAAAAGGA 59.897 50.000 2.29 0.00 31.64 3.36
6385 6603 3.124560 GAGCGCCTAGACATAAAAGGAC 58.875 50.000 2.29 0.00 31.64 3.85
6386 6604 2.158943 AGCGCCTAGACATAAAAGGACC 60.159 50.000 2.29 0.00 31.64 4.46
6387 6605 2.835027 CGCCTAGACATAAAAGGACCC 58.165 52.381 0.00 0.00 31.64 4.46
6388 6606 2.484947 CGCCTAGACATAAAAGGACCCC 60.485 54.545 0.00 0.00 31.64 4.95
6389 6607 2.158652 GCCTAGACATAAAAGGACCCCC 60.159 54.545 0.00 0.00 31.64 5.40
6390 6608 2.104281 CCTAGACATAAAAGGACCCCCG 59.896 54.545 0.00 0.00 37.58 5.73
6391 6609 1.665137 AGACATAAAAGGACCCCCGT 58.335 50.000 0.00 0.00 37.58 5.28
6392 6610 1.558294 AGACATAAAAGGACCCCCGTC 59.442 52.381 0.00 0.00 38.38 4.79
6424 6642 2.761392 AAACGAAAACACTAACGCCC 57.239 45.000 0.00 0.00 0.00 6.13
6425 6643 1.666054 AACGAAAACACTAACGCCCA 58.334 45.000 0.00 0.00 0.00 5.36
6426 6644 0.939419 ACGAAAACACTAACGCCCAC 59.061 50.000 0.00 0.00 0.00 4.61
6427 6645 0.938713 CGAAAACACTAACGCCCACA 59.061 50.000 0.00 0.00 0.00 4.17
6428 6646 1.333435 CGAAAACACTAACGCCCACAC 60.333 52.381 0.00 0.00 0.00 3.82
6429 6647 0.658897 AAAACACTAACGCCCACACG 59.341 50.000 0.00 0.00 39.50 4.49
6441 6659 2.932905 CACACGTGTGGGCGTTAC 59.067 61.111 35.65 0.00 43.83 2.50
6442 6660 2.280321 ACACGTGTGGGCGTTACC 60.280 61.111 22.71 0.00 43.83 2.85
6443 6661 2.029964 CACGTGTGGGCGTTACCT 59.970 61.111 7.58 0.00 43.83 3.08
6444 6662 1.289694 CACGTGTGGGCGTTACCTA 59.710 57.895 7.58 0.00 43.83 3.08
6445 6663 0.319727 CACGTGTGGGCGTTACCTAA 60.320 55.000 7.58 0.00 43.83 2.69
6446 6664 0.319813 ACGTGTGGGCGTTACCTAAC 60.320 55.000 0.00 0.00 43.04 2.34
6447 6665 0.037975 CGTGTGGGCGTTACCTAACT 60.038 55.000 0.00 0.00 39.10 2.24
6448 6666 1.718396 GTGTGGGCGTTACCTAACTC 58.282 55.000 0.00 0.00 39.10 3.01
6449 6667 0.244450 TGTGGGCGTTACCTAACTCG 59.756 55.000 0.00 0.00 39.10 4.18
6450 6668 1.080435 GTGGGCGTTACCTAACTCGC 61.080 60.000 0.00 0.00 46.42 5.03
6452 6670 4.099403 GCGTTACCTAACTCGCCC 57.901 61.111 0.00 0.00 42.33 6.13
6453 6671 1.216178 GCGTTACCTAACTCGCCCA 59.784 57.895 0.00 0.00 42.33 5.36
6454 6672 1.080435 GCGTTACCTAACTCGCCCAC 61.080 60.000 0.00 0.00 42.33 4.61
6455 6673 0.244450 CGTTACCTAACTCGCCCACA 59.756 55.000 0.00 0.00 34.12 4.17
6456 6674 1.718396 GTTACCTAACTCGCCCACAC 58.282 55.000 0.00 0.00 33.52 3.82
6457 6675 0.244450 TTACCTAACTCGCCCACACG 59.756 55.000 0.00 0.00 0.00 4.49
6458 6676 0.895100 TACCTAACTCGCCCACACGT 60.895 55.000 0.00 0.00 0.00 4.49
6459 6677 1.445582 CCTAACTCGCCCACACGTC 60.446 63.158 0.00 0.00 0.00 4.34
6460 6678 1.445582 CTAACTCGCCCACACGTCC 60.446 63.158 0.00 0.00 0.00 4.79
6461 6679 3.271706 TAACTCGCCCACACGTCCG 62.272 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 122 1.215647 CGAAGCGGTGAAGCCTACT 59.784 57.895 0.00 0.00 38.01 2.57
139 145 2.138179 CGGGAATCCTAGCGGGGAA 61.138 63.158 0.00 0.00 39.02 3.97
144 150 2.735237 GGGTCGGGAATCCTAGCG 59.265 66.667 0.00 0.00 0.00 4.26
169 175 0.811616 GATCGAGCCGGTGAGCAATT 60.812 55.000 1.90 0.00 34.23 2.32
170 176 1.227380 GATCGAGCCGGTGAGCAAT 60.227 57.895 1.90 0.00 34.23 3.56
180 186 2.602322 GCCTGCAATCGATCGAGCC 61.602 63.158 23.84 13.74 0.00 4.70
219 225 2.423446 CCTATGTCCCAGCCGCTC 59.577 66.667 0.00 0.00 0.00 5.03
231 237 1.761174 CGGACCCCCAATCCCTATG 59.239 63.158 0.00 0.00 31.99 2.23
234 240 4.364686 ACCGGACCCCCAATCCCT 62.365 66.667 9.46 0.00 31.99 4.20
252 258 4.092091 GCGAGTAAATCTTGACTGACCAAG 59.908 45.833 0.00 0.00 43.58 3.61
262 268 5.866633 AGTCTTCAGAAGCGAGTAAATCTTG 59.133 40.000 5.15 0.00 0.00 3.02
263 269 5.866633 CAGTCTTCAGAAGCGAGTAAATCTT 59.133 40.000 5.15 0.00 0.00 2.40
287 293 3.696051 TGTCCATTGAAATCCTAGCAAGC 59.304 43.478 0.00 0.00 0.00 4.01
290 296 4.158394 GCTTTGTCCATTGAAATCCTAGCA 59.842 41.667 0.00 0.00 0.00 3.49
305 311 2.824489 GGCCCTAGCGCTTTGTCC 60.824 66.667 18.68 9.08 41.24 4.02
306 312 2.567564 TACGGCCCTAGCGCTTTGTC 62.568 60.000 18.68 4.97 41.24 3.18
308 314 1.883084 CTACGGCCCTAGCGCTTTG 60.883 63.158 18.68 9.42 41.24 2.77
342 352 1.712081 CAGATCGTCAAAGCGCCAG 59.288 57.895 2.29 0.00 0.00 4.85
450 484 6.375455 ACTTACTCCTATGTGCTTTGGAATTG 59.625 38.462 0.00 0.00 0.00 2.32
526 560 0.109342 AAACACCACAGAGAGGCAGG 59.891 55.000 0.00 0.00 0.00 4.85
550 584 7.813627 TCATCAGCAAATTCATCGAATCAAAAA 59.186 29.630 0.00 0.00 30.29 1.94
580 614 1.532316 GCCCAGCATATGTGGCCAT 60.532 57.895 9.72 0.00 38.58 4.40
606 640 0.952497 AGCAGTGCATCACAGGTTCG 60.952 55.000 19.20 0.00 36.74 3.95
620 654 2.749044 CAATCCCGCTGCAGCAGT 60.749 61.111 36.03 15.52 42.21 4.40
630 664 2.165437 CCACCACCAAATAACAATCCCG 59.835 50.000 0.00 0.00 0.00 5.14
674 708 1.380771 GTGTTTTATTTGCGCGAACCG 59.619 47.619 13.41 0.00 40.75 4.44
677 711 3.610786 TCAGTGTTTTATTTGCGCGAA 57.389 38.095 13.52 13.52 0.00 4.70
693 727 4.298103 AGCAAGTCATCCTGATTTCAGT 57.702 40.909 6.81 0.00 42.27 3.41
695 729 5.046376 TGTCTAGCAAGTCATCCTGATTTCA 60.046 40.000 0.00 0.00 0.00 2.69
756 790 0.458543 ATCTCGCGATGTGGTGTGAC 60.459 55.000 10.36 0.00 0.00 3.67
770 804 2.292016 AGCTCGATCAGTGGTAATCTCG 59.708 50.000 0.00 0.00 0.00 4.04
773 807 3.126831 CCAAGCTCGATCAGTGGTAATC 58.873 50.000 0.00 0.00 0.00 1.75
829 863 5.391950 GGAAAGCGAAGATGCACAGAATAAA 60.392 40.000 0.00 0.00 37.31 1.40
840 874 4.228912 ACAAACAAGGAAAGCGAAGATG 57.771 40.909 0.00 0.00 0.00 2.90
847 881 4.040445 TGTGCTAACAAACAAGGAAAGC 57.960 40.909 0.00 0.00 31.82 3.51
892 926 3.923461 CCGAACAGTAAGCTGAAGAAGAG 59.077 47.826 1.30 0.00 45.28 2.85
935 972 3.057946 GGTGTCTTCACTCTTCAAATGGC 60.058 47.826 0.00 0.00 43.41 4.40
956 993 4.836825 TCTGCAGAGGAAATTCTAGTTGG 58.163 43.478 13.74 0.00 0.00 3.77
957 994 6.347696 AGATCTGCAGAGGAAATTCTAGTTG 58.652 40.000 22.96 0.00 0.00 3.16
988 1025 1.986575 GCAGCCATCCAAGAAGACGC 61.987 60.000 0.00 0.00 0.00 5.19
1023 1064 3.351794 TGTGTGTTACAGAAACCACCA 57.648 42.857 1.57 0.00 37.94 4.17
1098 1139 4.074466 GCTTTTGCATTCTTTGGCATTC 57.926 40.909 0.00 0.00 46.58 2.67
1147 1190 2.063266 CGCGGAAGTAGCTTTAACACA 58.937 47.619 0.00 0.00 0.00 3.72
1165 1208 9.736023 ATCATTAAAATCTAATTCCACTTTCGC 57.264 29.630 0.00 0.00 0.00 4.70
1341 1384 3.448660 ACAGGAAGGCTGGCAAATTAATC 59.551 43.478 3.38 0.00 0.00 1.75
1349 1392 1.002134 GCTTACAGGAAGGCTGGCA 60.002 57.895 3.38 0.00 35.49 4.92
1401 1444 6.719370 AGGAGTTCTAGCAGAGTGATAATAGG 59.281 42.308 0.00 0.00 0.00 2.57
1416 1459 5.888724 TCTTCATCACCAGTAGGAGTTCTAG 59.111 44.000 0.00 0.00 38.69 2.43
1474 1517 0.887933 GTGCCCGGTCATCATTGTTT 59.112 50.000 0.00 0.00 0.00 2.83
1605 1648 9.696572 ATATCTTCTGTACAGGAGTAGTAAACA 57.303 33.333 27.04 8.94 35.50 2.83
1681 1724 6.885735 AAAAGTTAACATCAAAGTGTGCAC 57.114 33.333 10.75 10.75 31.49 4.57
1936 1981 7.385778 TGCGTCTTTTAGGTGCTAATAAATT 57.614 32.000 0.00 0.00 0.00 1.82
2456 2516 2.095059 GGTAGACATGCCAGCAAAACAG 60.095 50.000 0.00 0.00 0.00 3.16
2482 2542 1.555967 ACCATGGGCATGTACCAAAC 58.444 50.000 18.09 0.00 42.17 2.93
2782 2852 5.597806 CATGGACTGATAAAAATGCTGCAT 58.402 37.500 9.81 9.81 0.00 3.96
2789 2859 7.329226 CGAAAAACTGCATGGACTGATAAAAAT 59.671 33.333 0.00 0.00 0.00 1.82
2839 2909 2.927004 TGCTCCGTTCGAAAGCATT 58.073 47.368 16.94 0.00 40.91 3.56
3454 3525 2.859165 TTCCAACTGCTTCAGGGTAG 57.141 50.000 0.00 0.00 35.51 3.18
3517 3590 8.265055 TCCCCTAATTATTGAACTTCTGTACTG 58.735 37.037 0.00 0.00 0.00 2.74
3593 3666 5.541845 TCTCTAATCCCATGCTTACAATCG 58.458 41.667 0.00 0.00 0.00 3.34
3595 3668 7.781693 ACAAATCTCTAATCCCATGCTTACAAT 59.218 33.333 0.00 0.00 0.00 2.71
3635 3709 2.023673 AGAAGCATCTCCAGAGACTCG 58.976 52.381 0.00 0.00 40.75 4.18
3779 3868 9.886132 GACAAGAAATGACCTCCTTTAGTATAA 57.114 33.333 0.00 0.00 0.00 0.98
3780 3869 9.042450 TGACAAGAAATGACCTCCTTTAGTATA 57.958 33.333 0.00 0.00 0.00 1.47
3866 3955 4.098960 TCACCTATCTGGGTTCGAACATAC 59.901 45.833 28.24 17.98 41.11 2.39
3919 4008 6.091437 GGAAAGCAAGATGAAACAAGATGAG 58.909 40.000 0.00 0.00 0.00 2.90
3920 4009 5.535783 TGGAAAGCAAGATGAAACAAGATGA 59.464 36.000 0.00 0.00 0.00 2.92
3961 4050 9.535878 TTGTGCACGAACAAGATATATATAACA 57.464 29.630 13.13 0.00 35.16 2.41
3973 4062 5.121611 TCAATAGGTATTGTGCACGAACAAG 59.878 40.000 11.67 0.00 42.99 3.16
3996 4086 1.077169 AGTGTTTGGGGAAGGGGAATC 59.923 52.381 0.00 0.00 0.00 2.52
4081 4171 8.934825 CCAAATGTTTTGTCCATTAAAGGTATG 58.065 33.333 0.00 0.00 32.40 2.39
4117 4207 1.597742 GTTGAGCTTCTTCCACAGCA 58.402 50.000 0.00 0.00 38.61 4.41
4173 4263 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4174 4264 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4198 4298 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
4199 4299 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
4200 4300 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
4201 4301 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
4202 4302 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
4203 4303 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4204 4304 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4205 4305 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4206 4306 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4207 4307 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4208 4308 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4209 4309 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
4210 4310 5.960811 AGAAAGAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
4211 4311 6.232581 AGAAAGAGAGAGAGAGAGAGAGAG 57.767 45.833 0.00 0.00 0.00 3.20
4212 4312 7.633772 GCTTAGAAAGAGAGAGAGAGAGAGAGA 60.634 44.444 0.00 0.00 0.00 3.10
4213 4313 6.481644 GCTTAGAAAGAGAGAGAGAGAGAGAG 59.518 46.154 0.00 0.00 0.00 3.20
4214 4314 6.349300 GCTTAGAAAGAGAGAGAGAGAGAGA 58.651 44.000 0.00 0.00 0.00 3.10
4215 4315 5.529060 GGCTTAGAAAGAGAGAGAGAGAGAG 59.471 48.000 0.00 0.00 0.00 3.20
4216 4316 5.045213 TGGCTTAGAAAGAGAGAGAGAGAGA 60.045 44.000 0.00 0.00 0.00 3.10
4217 4317 5.066505 GTGGCTTAGAAAGAGAGAGAGAGAG 59.933 48.000 0.00 0.00 0.00 3.20
4218 4318 4.947388 GTGGCTTAGAAAGAGAGAGAGAGA 59.053 45.833 0.00 0.00 0.00 3.10
4219 4319 4.704540 TGTGGCTTAGAAAGAGAGAGAGAG 59.295 45.833 0.00 0.00 0.00 3.20
4220 4320 4.461081 GTGTGGCTTAGAAAGAGAGAGAGA 59.539 45.833 0.00 0.00 0.00 3.10
4221 4321 4.462483 AGTGTGGCTTAGAAAGAGAGAGAG 59.538 45.833 0.00 0.00 0.00 3.20
4222 4322 4.411927 AGTGTGGCTTAGAAAGAGAGAGA 58.588 43.478 0.00 0.00 0.00 3.10
4223 4323 4.799564 AGTGTGGCTTAGAAAGAGAGAG 57.200 45.455 0.00 0.00 0.00 3.20
4409 4511 8.791355 AAGAAATGGTACGTTTCAATACAAAC 57.209 30.769 18.69 0.00 37.89 2.93
4486 4589 1.337167 CCATATTCTCCATCGAGCGCA 60.337 52.381 11.47 0.00 35.94 6.09
4596 4699 2.148916 GCCAAAGGCTAAAACCACAC 57.851 50.000 0.00 0.00 46.69 3.82
4621 4724 2.945456 AGTCAGTGGTATATGGAGCGA 58.055 47.619 0.00 0.00 0.00 4.93
4889 4992 4.928615 GCAACCTCATATAAGCAGCTAGAG 59.071 45.833 0.00 0.00 0.00 2.43
4930 5034 3.134804 AGAAACGGGAGGATGGAAGTATG 59.865 47.826 0.00 0.00 0.00 2.39
4973 5077 3.691118 TGTCACTAAATGCTCTCCATTGC 59.309 43.478 0.00 0.00 43.22 3.56
4981 5085 6.591834 AGTGTAATCAGTGTCACTAAATGCTC 59.408 38.462 4.85 0.15 39.01 4.26
4996 5100 9.809096 AATAGTAACAGTGATCAGTGTAATCAG 57.191 33.333 31.34 8.24 43.66 2.90
5025 5129 5.019470 TCTGGAGAGTGTAATCAGTGTCAT 58.981 41.667 0.00 0.00 38.52 3.06
5209 5313 7.299787 ACGGTTCGAGAAGATTAATTAAACC 57.700 36.000 1.21 1.36 0.00 3.27
5254 5359 2.336945 TGAGCAGGCTGTGGATAATG 57.663 50.000 17.16 0.00 0.00 1.90
5373 5478 2.047274 ATGACTTGCGTGACCGGG 60.047 61.111 6.32 0.00 33.68 5.73
5479 5584 6.754209 ACTTATCATTCAAGTTCTGTAGCGAG 59.246 38.462 0.00 0.00 32.28 5.03
5481 5586 6.700020 CACTTATCATTCAAGTTCTGTAGCG 58.300 40.000 0.00 0.00 33.99 4.26
5537 5642 4.520492 AGAGAAAAACCGAACTGATTGCAT 59.480 37.500 0.00 0.00 0.00 3.96
5590 5695 6.435904 ACAGCACTCAGATTCTCTAGTACTTT 59.564 38.462 0.00 0.00 0.00 2.66
5685 5798 2.747855 GAACCGGCTGAGCAAGGG 60.748 66.667 19.59 13.55 33.43 3.95
5698 5811 5.989168 CAGGTTAAATGGGAAAAACTGAACC 59.011 40.000 0.00 0.00 39.75 3.62
5781 5894 8.458843 AGGCATAAACTACATTGATTACACAAC 58.541 33.333 0.00 0.00 32.50 3.32
5802 5915 4.765813 ACGGGTTATAAGTACAAGGCAT 57.234 40.909 0.00 0.00 0.00 4.40
5811 5924 9.538508 GTATAAATGACTGAACGGGTTATAAGT 57.461 33.333 0.00 0.00 0.00 2.24
5812 5925 9.760077 AGTATAAATGACTGAACGGGTTATAAG 57.240 33.333 0.00 0.00 0.00 1.73
5857 5970 3.211045 TCCAAAGTAAGTGTTCTGGCAC 58.789 45.455 0.00 0.00 39.51 5.01
5858 5971 3.569194 TCCAAAGTAAGTGTTCTGGCA 57.431 42.857 0.00 0.00 0.00 4.92
5859 5972 5.938125 TCTATTCCAAAGTAAGTGTTCTGGC 59.062 40.000 0.00 0.00 0.00 4.85
5860 5973 6.595716 CCTCTATTCCAAAGTAAGTGTTCTGG 59.404 42.308 0.00 0.00 0.00 3.86
5861 5974 6.595716 CCCTCTATTCCAAAGTAAGTGTTCTG 59.404 42.308 0.00 0.00 0.00 3.02
5862 5975 6.500751 TCCCTCTATTCCAAAGTAAGTGTTCT 59.499 38.462 0.00 0.00 0.00 3.01
5864 5977 6.272558 ACTCCCTCTATTCCAAAGTAAGTGTT 59.727 38.462 0.00 0.00 0.00 3.32
5872 6067 9.853177 AAACATATTACTCCCTCTATTCCAAAG 57.147 33.333 0.00 0.00 0.00 2.77
5943 6138 2.665000 ACCAGCAGTGATCCACCG 59.335 61.111 0.00 0.00 34.49 4.94
5967 6164 0.750249 TTCAGCGTTCCAGAGTGACA 59.250 50.000 0.00 0.00 0.00 3.58
5968 6165 1.140816 GTTCAGCGTTCCAGAGTGAC 58.859 55.000 0.00 0.00 0.00 3.67
5969 6166 0.318699 CGTTCAGCGTTCCAGAGTGA 60.319 55.000 0.00 0.00 35.54 3.41
5970 6167 1.891060 GCGTTCAGCGTTCCAGAGTG 61.891 60.000 0.00 0.00 43.66 3.51
5971 6168 1.664965 GCGTTCAGCGTTCCAGAGT 60.665 57.895 0.00 0.00 43.66 3.24
5972 6169 3.159984 GCGTTCAGCGTTCCAGAG 58.840 61.111 0.00 0.00 43.66 3.35
5981 6178 1.566563 CATGCTATCCGCGTTCAGC 59.433 57.895 4.92 10.72 43.27 4.26
5982 6179 0.249447 TCCATGCTATCCGCGTTCAG 60.249 55.000 4.92 0.00 43.27 3.02
5983 6180 0.176910 TTCCATGCTATCCGCGTTCA 59.823 50.000 4.92 0.00 43.27 3.18
5990 6187 1.771255 ACCCAGACTTCCATGCTATCC 59.229 52.381 0.00 0.00 0.00 2.59
5995 6192 1.620822 AAACACCCAGACTTCCATGC 58.379 50.000 0.00 0.00 0.00 4.06
6030 6227 6.669125 TCAGGTCAAATGGTCAAAATGAAT 57.331 33.333 0.00 0.00 0.00 2.57
6031 6228 6.098124 AGTTCAGGTCAAATGGTCAAAATGAA 59.902 34.615 0.00 0.00 0.00 2.57
6055 6252 1.906574 TGGGTGACTTTAGCCCACTAG 59.093 52.381 0.00 0.00 46.59 2.57
6073 6270 1.879380 TCTTGACTGGACGCAAATTGG 59.121 47.619 0.00 0.00 0.00 3.16
6078 6275 1.066858 GGAGATCTTGACTGGACGCAA 60.067 52.381 0.00 0.00 0.00 4.85
6090 6287 4.990426 CGCACAAAATTTTTGGGAGATCTT 59.010 37.500 24.68 0.65 0.00 2.40
6139 6353 3.363844 GACAGGCGAGAGACCAGGC 62.364 68.421 0.00 0.00 43.69 4.85
6164 6382 0.110238 CTATTGTGCAGCGCAACGTT 60.110 50.000 23.49 10.78 41.47 3.99
6166 6384 1.864750 GCTATTGTGCAGCGCAACG 60.865 57.895 23.49 17.46 41.47 4.10
6167 6385 1.209898 TGCTATTGTGCAGCGCAAC 59.790 52.632 23.49 11.72 41.47 4.17
6168 6386 3.665790 TGCTATTGTGCAGCGCAA 58.334 50.000 23.26 23.26 41.47 4.85
6190 6408 5.779241 ATGGTCTCTTCACCCAATAAGAA 57.221 39.130 0.00 0.00 35.26 2.52
6195 6413 3.104512 TCGTATGGTCTCTTCACCCAAT 58.895 45.455 0.00 0.00 35.26 3.16
6196 6414 2.531771 TCGTATGGTCTCTTCACCCAA 58.468 47.619 0.00 0.00 35.26 4.12
6197 6415 2.225382 TCGTATGGTCTCTTCACCCA 57.775 50.000 0.00 0.00 35.26 4.51
6198 6416 4.142790 TCTATCGTATGGTCTCTTCACCC 58.857 47.826 0.00 0.00 35.26 4.61
6199 6417 5.769484 TTCTATCGTATGGTCTCTTCACC 57.231 43.478 0.00 0.00 36.90 4.02
6200 6418 6.797454 ACTTTCTATCGTATGGTCTCTTCAC 58.203 40.000 0.00 0.00 0.00 3.18
6201 6419 7.406031 AACTTTCTATCGTATGGTCTCTTCA 57.594 36.000 0.00 0.00 0.00 3.02
6202 6420 8.705048 AAAACTTTCTATCGTATGGTCTCTTC 57.295 34.615 0.00 0.00 0.00 2.87
6204 6422 9.804758 CTAAAAACTTTCTATCGTATGGTCTCT 57.195 33.333 0.00 0.00 0.00 3.10
6205 6423 9.798994 TCTAAAAACTTTCTATCGTATGGTCTC 57.201 33.333 0.00 0.00 0.00 3.36
6213 6431 8.504815 GCCTTTCTTCTAAAAACTTTCTATCGT 58.495 33.333 0.00 0.00 0.00 3.73
6214 6432 8.504005 TGCCTTTCTTCTAAAAACTTTCTATCG 58.496 33.333 0.00 0.00 0.00 2.92
6215 6433 9.613957 GTGCCTTTCTTCTAAAAACTTTCTATC 57.386 33.333 0.00 0.00 0.00 2.08
6216 6434 9.131791 TGTGCCTTTCTTCTAAAAACTTTCTAT 57.868 29.630 0.00 0.00 0.00 1.98
6217 6435 8.514330 TGTGCCTTTCTTCTAAAAACTTTCTA 57.486 30.769 0.00 0.00 0.00 2.10
6218 6436 7.404671 TGTGCCTTTCTTCTAAAAACTTTCT 57.595 32.000 0.00 0.00 0.00 2.52
6219 6437 7.254117 GCTTGTGCCTTTCTTCTAAAAACTTTC 60.254 37.037 0.00 0.00 0.00 2.62
6220 6438 6.535150 GCTTGTGCCTTTCTTCTAAAAACTTT 59.465 34.615 0.00 0.00 0.00 2.66
6221 6439 6.042777 GCTTGTGCCTTTCTTCTAAAAACTT 58.957 36.000 0.00 0.00 0.00 2.66
6222 6440 5.127031 TGCTTGTGCCTTTCTTCTAAAAACT 59.873 36.000 0.00 0.00 38.71 2.66
6223 6441 5.348164 TGCTTGTGCCTTTCTTCTAAAAAC 58.652 37.500 0.00 0.00 38.71 2.43
6224 6442 5.590530 TGCTTGTGCCTTTCTTCTAAAAA 57.409 34.783 0.00 0.00 38.71 1.94
6225 6443 5.348164 GTTGCTTGTGCCTTTCTTCTAAAA 58.652 37.500 0.00 0.00 38.71 1.52
6226 6444 4.497340 CGTTGCTTGTGCCTTTCTTCTAAA 60.497 41.667 0.00 0.00 38.71 1.85
6227 6445 3.003275 CGTTGCTTGTGCCTTTCTTCTAA 59.997 43.478 0.00 0.00 38.71 2.10
6228 6446 2.548057 CGTTGCTTGTGCCTTTCTTCTA 59.452 45.455 0.00 0.00 38.71 2.10
6229 6447 1.334869 CGTTGCTTGTGCCTTTCTTCT 59.665 47.619 0.00 0.00 38.71 2.85
6230 6448 1.758783 CGTTGCTTGTGCCTTTCTTC 58.241 50.000 0.00 0.00 38.71 2.87
6231 6449 0.249031 GCGTTGCTTGTGCCTTTCTT 60.249 50.000 0.00 0.00 38.71 2.52
6232 6450 1.103398 AGCGTTGCTTGTGCCTTTCT 61.103 50.000 0.00 0.00 33.89 2.52
6233 6451 0.661483 GAGCGTTGCTTGTGCCTTTC 60.661 55.000 0.00 0.00 39.88 2.62
6234 6452 1.360192 GAGCGTTGCTTGTGCCTTT 59.640 52.632 0.00 0.00 39.88 3.11
6235 6453 2.896801 CGAGCGTTGCTTGTGCCTT 61.897 57.895 0.00 0.00 39.88 4.35
6236 6454 3.349006 CGAGCGTTGCTTGTGCCT 61.349 61.111 0.00 0.00 39.88 4.75
6237 6455 4.389576 CCGAGCGTTGCTTGTGCC 62.390 66.667 5.39 0.00 39.88 5.01
6239 6457 2.392613 AAAGCCGAGCGTTGCTTGTG 62.393 55.000 9.80 0.00 46.58 3.33
6240 6458 0.882927 TAAAGCCGAGCGTTGCTTGT 60.883 50.000 9.80 4.55 46.58 3.16
6241 6459 0.452784 GTAAAGCCGAGCGTTGCTTG 60.453 55.000 9.80 0.00 46.58 4.01
6243 6461 2.380410 CGTAAAGCCGAGCGTTGCT 61.380 57.895 7.17 0.00 43.88 3.91
6244 6462 2.095843 CGTAAAGCCGAGCGTTGC 59.904 61.111 7.17 5.33 32.01 4.17
6245 6463 2.095843 GCGTAAAGCCGAGCGTTG 59.904 61.111 7.17 0.00 40.81 4.10
6255 6473 5.066634 TCTCTGTAGATCTTCTGGCGTAAAG 59.933 44.000 0.00 0.00 0.00 1.85
6256 6474 4.948004 TCTCTGTAGATCTTCTGGCGTAAA 59.052 41.667 0.00 0.00 0.00 2.01
6257 6475 4.524053 TCTCTGTAGATCTTCTGGCGTAA 58.476 43.478 0.00 0.00 0.00 3.18
6258 6476 4.152284 TCTCTGTAGATCTTCTGGCGTA 57.848 45.455 0.00 0.00 0.00 4.42
6259 6477 3.006112 TCTCTGTAGATCTTCTGGCGT 57.994 47.619 0.00 0.00 0.00 5.68
6260 6478 3.380004 ACTTCTCTGTAGATCTTCTGGCG 59.620 47.826 0.00 0.00 0.00 5.69
6261 6479 4.159506 ACACTTCTCTGTAGATCTTCTGGC 59.840 45.833 0.00 0.00 0.00 4.85
6262 6480 5.913137 ACACTTCTCTGTAGATCTTCTGG 57.087 43.478 0.00 0.00 0.00 3.86
6263 6481 8.600449 AAAAACACTTCTCTGTAGATCTTCTG 57.400 34.615 0.00 0.00 0.00 3.02
6264 6482 8.424918 TGAAAAACACTTCTCTGTAGATCTTCT 58.575 33.333 0.00 0.00 0.00 2.85
6265 6483 8.594881 TGAAAAACACTTCTCTGTAGATCTTC 57.405 34.615 0.00 0.00 0.00 2.87
6266 6484 9.566432 AATGAAAAACACTTCTCTGTAGATCTT 57.434 29.630 0.00 0.00 0.00 2.40
6273 6491 8.548721 CGTTACTAATGAAAAACACTTCTCTGT 58.451 33.333 0.00 0.00 0.00 3.41
6274 6492 8.009974 CCGTTACTAATGAAAAACACTTCTCTG 58.990 37.037 0.00 0.00 0.00 3.35
6275 6493 7.172703 CCCGTTACTAATGAAAAACACTTCTCT 59.827 37.037 0.00 0.00 0.00 3.10
6276 6494 7.295930 CCCGTTACTAATGAAAAACACTTCTC 58.704 38.462 0.00 0.00 0.00 2.87
6277 6495 6.293790 GCCCGTTACTAATGAAAAACACTTCT 60.294 38.462 0.00 0.00 0.00 2.85
6278 6496 5.854866 GCCCGTTACTAATGAAAAACACTTC 59.145 40.000 0.00 0.00 0.00 3.01
6279 6497 5.299782 TGCCCGTTACTAATGAAAAACACTT 59.700 36.000 0.00 0.00 0.00 3.16
6280 6498 4.822896 TGCCCGTTACTAATGAAAAACACT 59.177 37.500 0.00 0.00 0.00 3.55
6281 6499 4.913345 GTGCCCGTTACTAATGAAAAACAC 59.087 41.667 0.00 0.00 0.00 3.32
6282 6500 4.319622 CGTGCCCGTTACTAATGAAAAACA 60.320 41.667 0.00 0.00 0.00 2.83
6283 6501 4.153256 CGTGCCCGTTACTAATGAAAAAC 58.847 43.478 0.00 0.00 0.00 2.43
6284 6502 3.365164 GCGTGCCCGTTACTAATGAAAAA 60.365 43.478 0.00 0.00 36.15 1.94
6285 6503 2.160022 GCGTGCCCGTTACTAATGAAAA 59.840 45.455 0.00 0.00 36.15 2.29
6286 6504 1.733360 GCGTGCCCGTTACTAATGAAA 59.267 47.619 0.00 0.00 36.15 2.69
6287 6505 1.337917 TGCGTGCCCGTTACTAATGAA 60.338 47.619 0.00 0.00 36.15 2.57
6288 6506 0.246910 TGCGTGCCCGTTACTAATGA 59.753 50.000 0.00 0.00 36.15 2.57
6289 6507 1.062002 CTTGCGTGCCCGTTACTAATG 59.938 52.381 0.00 0.00 36.15 1.90
6290 6508 1.338389 ACTTGCGTGCCCGTTACTAAT 60.338 47.619 0.00 0.00 36.15 1.73
6291 6509 0.033781 ACTTGCGTGCCCGTTACTAA 59.966 50.000 0.00 0.00 36.15 2.24
6292 6510 0.668096 CACTTGCGTGCCCGTTACTA 60.668 55.000 0.00 0.00 33.82 1.82
6293 6511 1.959226 CACTTGCGTGCCCGTTACT 60.959 57.895 0.00 0.00 33.82 2.24
6294 6512 1.296056 ATCACTTGCGTGCCCGTTAC 61.296 55.000 0.00 0.00 40.99 2.50
6295 6513 0.604243 AATCACTTGCGTGCCCGTTA 60.604 50.000 0.00 0.00 40.99 3.18
6296 6514 1.852067 GAATCACTTGCGTGCCCGTT 61.852 55.000 0.00 0.00 40.99 4.44
6297 6515 2.281484 AATCACTTGCGTGCCCGT 60.281 55.556 0.00 0.00 40.99 5.28
6298 6516 2.480555 GAATCACTTGCGTGCCCG 59.519 61.111 0.00 0.00 40.99 6.13
6299 6517 2.480555 CGAATCACTTGCGTGCCC 59.519 61.111 0.00 0.00 40.99 5.36
6300 6518 2.480555 CCGAATCACTTGCGTGCC 59.519 61.111 0.00 0.00 40.99 5.01
6301 6519 1.369091 ATCCCGAATCACTTGCGTGC 61.369 55.000 0.00 0.00 40.99 5.34
6302 6520 1.860950 CTATCCCGAATCACTTGCGTG 59.139 52.381 0.00 0.00 42.59 5.34
6303 6521 1.754803 TCTATCCCGAATCACTTGCGT 59.245 47.619 0.00 0.00 0.00 5.24
6304 6522 2.034685 TCTCTATCCCGAATCACTTGCG 59.965 50.000 0.00 0.00 0.00 4.85
6305 6523 3.735237 TCTCTATCCCGAATCACTTGC 57.265 47.619 0.00 0.00 0.00 4.01
6306 6524 4.815269 GGATCTCTATCCCGAATCACTTG 58.185 47.826 0.00 0.00 45.37 3.16
6319 6537 9.771534 GCTGTTGTATTTAAGAAGGATCTCTAT 57.228 33.333 0.00 0.00 33.77 1.98
6320 6538 7.921214 CGCTGTTGTATTTAAGAAGGATCTCTA 59.079 37.037 0.00 0.00 33.77 2.43
6321 6539 6.758886 CGCTGTTGTATTTAAGAAGGATCTCT 59.241 38.462 0.00 0.00 33.77 3.10
6322 6540 6.510317 GCGCTGTTGTATTTAAGAAGGATCTC 60.510 42.308 0.00 0.00 33.77 2.75
6323 6541 5.294552 GCGCTGTTGTATTTAAGAAGGATCT 59.705 40.000 0.00 0.00 37.57 2.75
6324 6542 5.502606 GCGCTGTTGTATTTAAGAAGGATC 58.497 41.667 0.00 0.00 0.00 3.36
6325 6543 4.034048 CGCGCTGTTGTATTTAAGAAGGAT 59.966 41.667 5.56 0.00 0.00 3.24
6326 6544 3.369756 CGCGCTGTTGTATTTAAGAAGGA 59.630 43.478 5.56 0.00 0.00 3.36
6327 6545 3.369756 TCGCGCTGTTGTATTTAAGAAGG 59.630 43.478 5.56 0.00 0.00 3.46
6328 6546 4.323751 GTCGCGCTGTTGTATTTAAGAAG 58.676 43.478 5.56 0.00 0.00 2.85
6329 6547 3.123959 GGTCGCGCTGTTGTATTTAAGAA 59.876 43.478 5.56 0.00 0.00 2.52
6330 6548 2.669434 GGTCGCGCTGTTGTATTTAAGA 59.331 45.455 5.56 0.00 0.00 2.10
6331 6549 2.671396 AGGTCGCGCTGTTGTATTTAAG 59.329 45.455 5.56 0.00 0.00 1.85
6332 6550 2.413796 CAGGTCGCGCTGTTGTATTTAA 59.586 45.455 5.56 0.00 0.00 1.52
6333 6551 1.996898 CAGGTCGCGCTGTTGTATTTA 59.003 47.619 5.56 0.00 0.00 1.40
6334 6552 0.796312 CAGGTCGCGCTGTTGTATTT 59.204 50.000 5.56 0.00 0.00 1.40
6335 6553 1.635663 GCAGGTCGCGCTGTTGTATT 61.636 55.000 14.00 0.00 0.00 1.89
6336 6554 2.100631 GCAGGTCGCGCTGTTGTAT 61.101 57.895 14.00 0.00 0.00 2.29
6337 6555 2.736995 GCAGGTCGCGCTGTTGTA 60.737 61.111 14.00 0.00 0.00 2.41
6346 6564 2.383527 CCGAGTGAAAGCAGGTCGC 61.384 63.158 0.00 0.00 42.91 5.19
6347 6565 0.734253 CTCCGAGTGAAAGCAGGTCG 60.734 60.000 0.00 0.00 33.54 4.79
6348 6566 1.016653 GCTCCGAGTGAAAGCAGGTC 61.017 60.000 0.00 0.00 36.06 3.85
6349 6567 1.004440 GCTCCGAGTGAAAGCAGGT 60.004 57.895 0.00 0.00 36.06 4.00
6350 6568 2.097038 CGCTCCGAGTGAAAGCAGG 61.097 63.158 2.55 0.00 35.76 4.85
6351 6569 2.734673 GCGCTCCGAGTGAAAGCAG 61.735 63.158 13.28 0.00 35.76 4.24
6352 6570 2.738521 GCGCTCCGAGTGAAAGCA 60.739 61.111 13.28 0.00 35.76 3.91
6353 6571 2.558554 TAGGCGCTCCGAGTGAAAGC 62.559 60.000 13.28 3.74 37.47 3.51
6354 6572 0.526524 CTAGGCGCTCCGAGTGAAAG 60.527 60.000 13.28 2.70 37.47 2.62
6355 6573 0.963856 TCTAGGCGCTCCGAGTGAAA 60.964 55.000 13.28 0.00 36.59 2.69
6356 6574 1.378119 TCTAGGCGCTCCGAGTGAA 60.378 57.895 13.28 0.00 36.59 3.18
6357 6575 2.113433 GTCTAGGCGCTCCGAGTGA 61.113 63.158 13.28 0.00 36.59 3.41
6358 6576 1.729470 ATGTCTAGGCGCTCCGAGTG 61.729 60.000 7.64 4.48 36.59 3.51
6359 6577 0.179026 TATGTCTAGGCGCTCCGAGT 60.179 55.000 7.64 0.00 36.59 4.18
6360 6578 0.952280 TTATGTCTAGGCGCTCCGAG 59.048 55.000 7.64 0.00 36.55 4.63
6361 6579 1.395635 TTTATGTCTAGGCGCTCCGA 58.604 50.000 7.64 0.00 37.47 4.55
6362 6580 2.128035 CTTTTATGTCTAGGCGCTCCG 58.872 52.381 7.64 0.00 37.47 4.63
6363 6581 2.102588 TCCTTTTATGTCTAGGCGCTCC 59.897 50.000 7.64 0.00 0.00 4.70
6364 6582 3.124560 GTCCTTTTATGTCTAGGCGCTC 58.875 50.000 7.64 0.00 0.00 5.03
6365 6583 2.158943 GGTCCTTTTATGTCTAGGCGCT 60.159 50.000 7.64 0.00 0.00 5.92
6366 6584 2.210961 GGTCCTTTTATGTCTAGGCGC 58.789 52.381 0.00 0.00 0.00 6.53
6367 6585 2.484947 GGGGTCCTTTTATGTCTAGGCG 60.485 54.545 0.00 0.00 0.00 5.52
6368 6586 2.158652 GGGGGTCCTTTTATGTCTAGGC 60.159 54.545 0.00 0.00 0.00 3.93
6369 6587 2.104281 CGGGGGTCCTTTTATGTCTAGG 59.896 54.545 0.00 0.00 0.00 3.02
6370 6588 2.770232 ACGGGGGTCCTTTTATGTCTAG 59.230 50.000 0.00 0.00 0.00 2.43
6371 6589 2.767960 GACGGGGGTCCTTTTATGTCTA 59.232 50.000 0.00 0.00 0.00 2.59
6372 6590 1.558294 GACGGGGGTCCTTTTATGTCT 59.442 52.381 0.00 0.00 0.00 3.41
6373 6591 1.407851 GGACGGGGGTCCTTTTATGTC 60.408 57.143 6.03 0.00 40.27 3.06
6374 6592 0.622136 GGACGGGGGTCCTTTTATGT 59.378 55.000 6.03 0.00 40.27 2.29
6375 6593 0.106868 GGGACGGGGGTCCTTTTATG 60.107 60.000 12.57 0.00 42.91 1.90
6376 6594 0.550638 TGGGACGGGGGTCCTTTTAT 60.551 55.000 12.57 0.00 42.91 1.40
6377 6595 0.771339 TTGGGACGGGGGTCCTTTTA 60.771 55.000 12.57 0.00 42.91 1.52
6378 6596 1.657072 TTTGGGACGGGGGTCCTTTT 61.657 55.000 12.57 0.00 42.91 2.27
6379 6597 1.657072 TTTTGGGACGGGGGTCCTTT 61.657 55.000 12.57 0.00 42.91 3.11
6380 6598 1.657072 TTTTTGGGACGGGGGTCCTT 61.657 55.000 12.57 0.00 42.91 3.36
6381 6599 2.086194 TTTTTGGGACGGGGGTCCT 61.086 57.895 12.57 0.00 42.91 3.85
6382 6600 2.521991 TTTTTGGGACGGGGGTCC 59.478 61.111 4.69 4.69 42.62 4.46
6403 6621 3.119566 TGGGCGTTAGTGTTTTCGTTTTT 60.120 39.130 0.00 0.00 0.00 1.94
6404 6622 2.422832 TGGGCGTTAGTGTTTTCGTTTT 59.577 40.909 0.00 0.00 0.00 2.43
6405 6623 2.015587 TGGGCGTTAGTGTTTTCGTTT 58.984 42.857 0.00 0.00 0.00 3.60
6406 6624 1.331447 GTGGGCGTTAGTGTTTTCGTT 59.669 47.619 0.00 0.00 0.00 3.85
6407 6625 0.939419 GTGGGCGTTAGTGTTTTCGT 59.061 50.000 0.00 0.00 0.00 3.85
6408 6626 0.938713 TGTGGGCGTTAGTGTTTTCG 59.061 50.000 0.00 0.00 0.00 3.46
6409 6627 1.333435 CGTGTGGGCGTTAGTGTTTTC 60.333 52.381 0.00 0.00 0.00 2.29
6410 6628 0.658897 CGTGTGGGCGTTAGTGTTTT 59.341 50.000 0.00 0.00 0.00 2.43
6411 6629 0.462403 ACGTGTGGGCGTTAGTGTTT 60.462 50.000 0.00 0.00 43.04 2.83
6412 6630 1.144496 ACGTGTGGGCGTTAGTGTT 59.856 52.632 0.00 0.00 43.04 3.32
6413 6631 1.593209 CACGTGTGGGCGTTAGTGT 60.593 57.895 7.58 0.00 43.83 3.55
6414 6632 1.593209 ACACGTGTGGGCGTTAGTG 60.593 57.895 22.71 0.00 43.83 2.74
6415 6633 1.593209 CACACGTGTGGGCGTTAGT 60.593 57.895 35.65 1.12 43.83 2.24
6416 6634 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
6428 6646 0.037975 AGTTAGGTAACGCCCACACG 60.038 55.000 0.00 0.00 46.39 4.49
6429 6647 1.718396 GAGTTAGGTAACGCCCACAC 58.282 55.000 0.00 0.00 46.39 3.82
6430 6648 0.244450 CGAGTTAGGTAACGCCCACA 59.756 55.000 0.00 0.00 46.39 4.17
6431 6649 1.080435 GCGAGTTAGGTAACGCCCAC 61.080 60.000 0.00 0.00 44.27 4.61
6432 6650 1.216178 GCGAGTTAGGTAACGCCCA 59.784 57.895 0.00 0.00 44.27 5.36
6433 6651 4.099403 GCGAGTTAGGTAACGCCC 57.901 61.111 0.00 0.00 44.27 6.13
6436 6654 0.244450 TGTGGGCGAGTTAGGTAACG 59.756 55.000 0.00 0.00 46.39 3.18
6437 6655 1.718396 GTGTGGGCGAGTTAGGTAAC 58.282 55.000 0.00 0.00 36.46 2.50
6438 6656 0.244450 CGTGTGGGCGAGTTAGGTAA 59.756 55.000 0.00 0.00 0.00 2.85
6439 6657 0.895100 ACGTGTGGGCGAGTTAGGTA 60.895 55.000 0.00 0.00 35.59 3.08
6440 6658 2.151049 GACGTGTGGGCGAGTTAGGT 62.151 60.000 0.00 0.00 35.59 3.08
6441 6659 1.445582 GACGTGTGGGCGAGTTAGG 60.446 63.158 0.00 0.00 35.59 2.69
6442 6660 1.445582 GGACGTGTGGGCGAGTTAG 60.446 63.158 0.00 0.00 35.59 2.34
6443 6661 2.652530 GGACGTGTGGGCGAGTTA 59.347 61.111 0.00 0.00 35.59 2.24
6444 6662 4.657824 CGGACGTGTGGGCGAGTT 62.658 66.667 0.00 0.00 35.59 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.