Multiple sequence alignment - TraesCS4A01G386300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G386300 chr4A 100.000 2807 0 0 1 2807 663696847 663694041 0.000000e+00 5184.0
1 TraesCS4A01G386300 chr4A 76.992 891 168 19 932 1796 602863356 602864235 2.530000e-130 475.0
2 TraesCS4A01G386300 chr4A 92.063 63 2 3 198 257 2982109 2982047 4.980000e-13 86.1
3 TraesCS4A01G386300 chr4A 87.324 71 7 1 231 299 681935130 681935200 2.320000e-11 80.5
4 TraesCS4A01G386300 chr7A 92.929 1584 78 11 386 1940 51662863 51661285 0.000000e+00 2274.0
5 TraesCS4A01G386300 chr7A 82.263 716 70 27 2109 2807 51656502 51655827 1.460000e-157 566.0
6 TraesCS4A01G386300 chr7A 87.500 64 7 1 203 266 2096937 2096875 3.880000e-09 73.1
7 TraesCS4A01G386300 chr7A 86.765 68 5 1 325 388 51664747 51664680 3.880000e-09 73.1
8 TraesCS4A01G386300 chr7D 91.304 1610 111 9 367 1952 48825255 48823651 0.000000e+00 2170.0
9 TraesCS4A01G386300 chr7D 81.322 1044 173 14 726 1765 624769138 624770163 0.000000e+00 828.0
10 TraesCS4A01G386300 chr3B 82.035 1091 168 20 709 1792 700073322 700072253 0.000000e+00 904.0
11 TraesCS4A01G386300 chr3B 80.922 1085 181 17 709 1789 700234835 700235897 0.000000e+00 833.0
12 TraesCS4A01G386300 chr3B 96.970 33 1 0 198 230 796471143 796471111 3.910000e-04 56.5
13 TraesCS4A01G386300 chr2D 81.725 1078 159 27 734 1796 13770235 13771289 0.000000e+00 865.0
14 TraesCS4A01G386300 chr2B 80.833 1080 166 29 729 1796 25069208 25070258 0.000000e+00 809.0
15 TraesCS4A01G386300 chr2B 76.965 1094 193 33 713 1770 713695137 713694067 1.130000e-158 569.0
16 TraesCS4A01G386300 chr2B 97.484 159 3 1 1953 2111 186376128 186376285 1.280000e-68 270.0
17 TraesCS4A01G386300 chr2B 96.226 159 4 2 1953 2110 101527243 101527086 2.770000e-65 259.0
18 TraesCS4A01G386300 chr2B 97.368 152 3 1 1953 2104 507928947 507928797 9.980000e-65 257.0
19 TraesCS4A01G386300 chr2B 73.804 439 87 22 714 1148 32964957 32964543 6.260000e-32 148.0
20 TraesCS4A01G386300 chr2B 93.103 58 3 1 230 286 79676163 79676106 1.790000e-12 84.2
21 TraesCS4A01G386300 chr5D 81.434 1018 135 34 714 1723 560224906 560225877 0.000000e+00 784.0
22 TraesCS4A01G386300 chr3D 80.095 1050 162 29 726 1771 529503733 529502727 0.000000e+00 737.0
23 TraesCS4A01G386300 chr2A 77.070 1099 189 34 713 1770 723828540 723827464 2.420000e-160 575.0
24 TraesCS4A01G386300 chr2A 72.831 438 93 18 714 1148 20329340 20329754 2.940000e-25 126.0
25 TraesCS4A01G386300 chr2A 83.529 85 5 7 230 305 183896023 183896107 1.390000e-08 71.3
26 TraesCS4A01G386300 chr3A 95.402 174 4 4 1937 2110 34440847 34441016 9.910000e-70 274.0
27 TraesCS4A01G386300 chr5B 96.875 160 4 1 1953 2112 690679691 690679533 1.660000e-67 267.0
28 TraesCS4A01G386300 chr5B 90.196 51 3 1 182 230 19580064 19580114 6.490000e-07 65.8
29 TraesCS4A01G386300 chr5A 97.452 157 3 1 1953 2109 33872998 33873153 1.660000e-67 267.0
30 TraesCS4A01G386300 chr5A 91.228 57 3 1 230 286 25705091 25705037 3.000000e-10 76.8
31 TraesCS4A01G386300 chr5A 92.500 40 1 2 191 228 334507740 334507779 3.910000e-04 56.5
32 TraesCS4A01G386300 chr5A 96.970 33 1 0 198 230 616750464 616750432 3.910000e-04 56.5
33 TraesCS4A01G386300 chr5A 86.275 51 4 3 182 230 51604584 51604535 5.000000e-03 52.8
34 TraesCS4A01G386300 chr1B 97.436 156 3 1 1953 2108 600258949 600259103 5.960000e-67 265.0
35 TraesCS4A01G386300 chr1B 93.103 58 3 1 230 286 299440823 299440880 1.790000e-12 84.2
36 TraesCS4A01G386300 chrUn 96.835 158 4 1 1953 2110 82169262 82169418 2.140000e-66 263.0
37 TraesCS4A01G386300 chrUn 73.696 441 84 19 714 1148 24658129 24657715 2.910000e-30 143.0
38 TraesCS4A01G386300 chr6A 96.273 161 5 1 1953 2113 570933102 570932943 2.140000e-66 263.0
39 TraesCS4A01G386300 chr6A 87.879 66 6 2 203 266 82953895 82953830 3.000000e-10 76.8
40 TraesCS4A01G386300 chr7B 93.103 58 3 1 230 286 233445356 233445299 1.790000e-12 84.2
41 TraesCS4A01G386300 chr7B 86.885 61 3 3 174 230 432780306 432780365 2.330000e-06 63.9
42 TraesCS4A01G386300 chr1D 82.979 94 7 7 230 315 36611962 36612054 3.000000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G386300 chr4A 663694041 663696847 2806 True 5184.00 5184 100.000 1 2807 1 chr4A.!!$R2 2806
1 TraesCS4A01G386300 chr4A 602863356 602864235 879 False 475.00 475 76.992 932 1796 1 chr4A.!!$F1 864
2 TraesCS4A01G386300 chr7A 51661285 51664747 3462 True 1173.55 2274 89.847 325 1940 2 chr7A.!!$R3 1615
3 TraesCS4A01G386300 chr7A 51655827 51656502 675 True 566.00 566 82.263 2109 2807 1 chr7A.!!$R2 698
4 TraesCS4A01G386300 chr7D 48823651 48825255 1604 True 2170.00 2170 91.304 367 1952 1 chr7D.!!$R1 1585
5 TraesCS4A01G386300 chr7D 624769138 624770163 1025 False 828.00 828 81.322 726 1765 1 chr7D.!!$F1 1039
6 TraesCS4A01G386300 chr3B 700072253 700073322 1069 True 904.00 904 82.035 709 1792 1 chr3B.!!$R1 1083
7 TraesCS4A01G386300 chr3B 700234835 700235897 1062 False 833.00 833 80.922 709 1789 1 chr3B.!!$F1 1080
8 TraesCS4A01G386300 chr2D 13770235 13771289 1054 False 865.00 865 81.725 734 1796 1 chr2D.!!$F1 1062
9 TraesCS4A01G386300 chr2B 25069208 25070258 1050 False 809.00 809 80.833 729 1796 1 chr2B.!!$F1 1067
10 TraesCS4A01G386300 chr2B 713694067 713695137 1070 True 569.00 569 76.965 713 1770 1 chr2B.!!$R5 1057
11 TraesCS4A01G386300 chr5D 560224906 560225877 971 False 784.00 784 81.434 714 1723 1 chr5D.!!$F1 1009
12 TraesCS4A01G386300 chr3D 529502727 529503733 1006 True 737.00 737 80.095 726 1771 1 chr3D.!!$R1 1045
13 TraesCS4A01G386300 chr2A 723827464 723828540 1076 True 575.00 575 77.070 713 1770 1 chr2A.!!$R1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.036732 TGTGTTGGATGACTGCCTCC 59.963 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 3955 0.036671 ACCAGAAATTCGTCCCCGAC 60.037 55.0 0.0 0.0 44.13 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.774354 AGTTTGAAAAATGTATGCAGCTTG 57.226 33.333 0.00 0.00 0.00 4.01
27 28 6.282930 AGTTTGAAAAATGTATGCAGCTTGT 58.717 32.000 0.00 0.00 0.00 3.16
28 29 6.201425 AGTTTGAAAAATGTATGCAGCTTGTG 59.799 34.615 0.00 0.00 0.00 3.33
29 30 5.199024 TGAAAAATGTATGCAGCTTGTGT 57.801 34.783 0.00 0.00 0.00 3.72
30 31 5.599732 TGAAAAATGTATGCAGCTTGTGTT 58.400 33.333 0.00 0.00 0.00 3.32
31 32 5.462729 TGAAAAATGTATGCAGCTTGTGTTG 59.537 36.000 0.00 0.00 0.00 3.33
32 33 3.581024 AATGTATGCAGCTTGTGTTGG 57.419 42.857 0.00 0.00 0.00 3.77
33 34 2.268762 TGTATGCAGCTTGTGTTGGA 57.731 45.000 0.00 0.00 0.00 3.53
34 35 2.794103 TGTATGCAGCTTGTGTTGGAT 58.206 42.857 0.00 0.00 38.73 3.41
35 36 2.488937 TGTATGCAGCTTGTGTTGGATG 59.511 45.455 0.00 0.00 36.31 3.51
36 37 1.913778 ATGCAGCTTGTGTTGGATGA 58.086 45.000 0.00 0.00 34.57 2.92
37 38 0.953727 TGCAGCTTGTGTTGGATGAC 59.046 50.000 0.00 0.00 0.00 3.06
38 39 1.242076 GCAGCTTGTGTTGGATGACT 58.758 50.000 0.00 0.00 0.00 3.41
39 40 1.068748 GCAGCTTGTGTTGGATGACTG 60.069 52.381 0.00 0.00 0.00 3.51
40 41 1.068748 CAGCTTGTGTTGGATGACTGC 60.069 52.381 0.00 0.00 0.00 4.40
41 42 0.242017 GCTTGTGTTGGATGACTGCC 59.758 55.000 0.00 0.00 0.00 4.85
42 43 1.901591 CTTGTGTTGGATGACTGCCT 58.098 50.000 0.00 0.00 0.00 4.75
43 44 1.808945 CTTGTGTTGGATGACTGCCTC 59.191 52.381 0.00 0.00 0.00 4.70
44 45 0.036732 TGTGTTGGATGACTGCCTCC 59.963 55.000 0.00 0.00 0.00 4.30
45 46 0.678048 GTGTTGGATGACTGCCTCCC 60.678 60.000 0.00 0.00 0.00 4.30
46 47 1.450312 GTTGGATGACTGCCTCCCG 60.450 63.158 0.00 0.00 0.00 5.14
47 48 3.329542 TTGGATGACTGCCTCCCGC 62.330 63.158 0.00 0.00 38.31 6.13
55 56 3.905454 TGCCTCCCGCATCCATAT 58.095 55.556 0.00 0.00 44.64 1.78
56 57 2.154139 TGCCTCCCGCATCCATATT 58.846 52.632 0.00 0.00 44.64 1.28
57 58 0.036732 TGCCTCCCGCATCCATATTC 59.963 55.000 0.00 0.00 44.64 1.75
58 59 1.021390 GCCTCCCGCATCCATATTCG 61.021 60.000 0.00 0.00 37.47 3.34
59 60 1.021390 CCTCCCGCATCCATATTCGC 61.021 60.000 0.00 0.00 0.00 4.70
60 61 0.320683 CTCCCGCATCCATATTCGCA 60.321 55.000 0.00 0.00 0.00 5.10
61 62 0.320683 TCCCGCATCCATATTCGCAG 60.321 55.000 0.00 0.00 0.00 5.18
62 63 0.320683 CCCGCATCCATATTCGCAGA 60.321 55.000 0.00 0.00 0.00 4.26
63 64 0.792640 CCGCATCCATATTCGCAGAC 59.207 55.000 0.00 0.00 34.32 3.51
64 65 1.606480 CCGCATCCATATTCGCAGACT 60.606 52.381 0.00 0.00 34.32 3.24
65 66 2.352715 CCGCATCCATATTCGCAGACTA 60.353 50.000 0.00 0.00 34.32 2.59
66 67 2.919859 CGCATCCATATTCGCAGACTAG 59.080 50.000 0.00 0.00 34.32 2.57
67 68 3.612717 CGCATCCATATTCGCAGACTAGT 60.613 47.826 0.00 0.00 34.32 2.57
68 69 3.923461 GCATCCATATTCGCAGACTAGTC 59.077 47.826 15.41 15.41 34.32 2.59
69 70 4.321601 GCATCCATATTCGCAGACTAGTCT 60.322 45.833 20.00 20.00 41.37 3.24
70 71 5.398169 CATCCATATTCGCAGACTAGTCTC 58.602 45.833 22.76 15.52 37.98 3.36
71 72 4.720046 TCCATATTCGCAGACTAGTCTCT 58.280 43.478 22.76 0.00 37.98 3.10
72 73 4.757657 TCCATATTCGCAGACTAGTCTCTC 59.242 45.833 22.76 15.53 37.98 3.20
73 74 4.759693 CCATATTCGCAGACTAGTCTCTCT 59.240 45.833 22.76 8.50 37.98 3.10
74 75 5.240623 CCATATTCGCAGACTAGTCTCTCTT 59.759 44.000 22.76 9.32 37.98 2.85
75 76 6.238897 CCATATTCGCAGACTAGTCTCTCTTT 60.239 42.308 22.76 10.31 37.98 2.52
76 77 4.688511 TTCGCAGACTAGTCTCTCTTTC 57.311 45.455 22.76 6.99 37.98 2.62
77 78 3.676093 TCGCAGACTAGTCTCTCTTTCA 58.324 45.455 22.76 0.21 37.98 2.69
78 79 4.265893 TCGCAGACTAGTCTCTCTTTCAT 58.734 43.478 22.76 0.00 37.98 2.57
79 80 4.095632 TCGCAGACTAGTCTCTCTTTCATG 59.904 45.833 22.76 10.16 37.98 3.07
80 81 4.681744 GCAGACTAGTCTCTCTTTCATGG 58.318 47.826 22.76 8.61 37.98 3.66
81 82 4.400884 GCAGACTAGTCTCTCTTTCATGGA 59.599 45.833 22.76 0.00 37.98 3.41
82 83 5.678616 GCAGACTAGTCTCTCTTTCATGGAC 60.679 48.000 22.76 1.35 37.98 4.02
83 84 5.417266 CAGACTAGTCTCTCTTTCATGGACA 59.583 44.000 22.76 0.00 37.98 4.02
84 85 5.652014 AGACTAGTCTCTCTTTCATGGACAG 59.348 44.000 20.00 0.00 34.17 3.51
85 86 5.575157 ACTAGTCTCTCTTTCATGGACAGA 58.425 41.667 0.00 0.00 0.00 3.41
86 87 6.194235 ACTAGTCTCTCTTTCATGGACAGAT 58.806 40.000 0.00 0.00 0.00 2.90
87 88 5.341872 AGTCTCTCTTTCATGGACAGATG 57.658 43.478 0.00 0.00 0.00 2.90
88 89 3.870419 GTCTCTCTTTCATGGACAGATGC 59.130 47.826 0.00 0.00 0.00 3.91
89 90 3.516700 TCTCTCTTTCATGGACAGATGCA 59.483 43.478 0.00 0.00 0.00 3.96
90 91 3.870274 TCTCTTTCATGGACAGATGCAG 58.130 45.455 0.00 0.00 0.00 4.41
91 92 2.943690 CTCTTTCATGGACAGATGCAGG 59.056 50.000 0.00 0.00 0.00 4.85
92 93 2.573009 TCTTTCATGGACAGATGCAGGA 59.427 45.455 0.00 0.00 34.96 3.86
93 94 2.704464 TTCATGGACAGATGCAGGAG 57.296 50.000 0.00 0.00 38.26 3.69
94 95 1.870064 TCATGGACAGATGCAGGAGA 58.130 50.000 0.00 0.00 31.50 3.71
95 96 2.405559 TCATGGACAGATGCAGGAGAT 58.594 47.619 0.00 0.00 31.50 2.75
96 97 2.775960 TCATGGACAGATGCAGGAGATT 59.224 45.455 0.00 0.00 31.50 2.40
97 98 3.201487 TCATGGACAGATGCAGGAGATTT 59.799 43.478 0.00 0.00 31.50 2.17
98 99 3.726557 TGGACAGATGCAGGAGATTTT 57.273 42.857 0.00 0.00 0.00 1.82
99 100 4.038271 TGGACAGATGCAGGAGATTTTT 57.962 40.909 0.00 0.00 0.00 1.94
118 119 3.884900 GCGGGTTGCGTTGTAGAT 58.115 55.556 0.00 0.00 0.00 1.98
119 120 1.423845 GCGGGTTGCGTTGTAGATG 59.576 57.895 0.00 0.00 0.00 2.90
120 121 1.423845 CGGGTTGCGTTGTAGATGC 59.576 57.895 0.00 0.00 40.83 3.91
121 122 1.800681 GGGTTGCGTTGTAGATGCC 59.199 57.895 0.00 0.00 39.64 4.40
122 123 1.654023 GGGTTGCGTTGTAGATGCCC 61.654 60.000 0.00 0.00 39.64 5.36
123 124 0.676782 GGTTGCGTTGTAGATGCCCT 60.677 55.000 0.00 0.00 39.64 5.19
124 125 1.165270 GTTGCGTTGTAGATGCCCTT 58.835 50.000 0.00 0.00 39.64 3.95
125 126 2.352388 GTTGCGTTGTAGATGCCCTTA 58.648 47.619 0.00 0.00 39.64 2.69
126 127 2.943033 GTTGCGTTGTAGATGCCCTTAT 59.057 45.455 0.00 0.00 39.64 1.73
127 128 2.560504 TGCGTTGTAGATGCCCTTATG 58.439 47.619 0.00 0.00 39.64 1.90
128 129 1.873591 GCGTTGTAGATGCCCTTATGG 59.126 52.381 0.00 0.00 34.03 2.74
129 130 2.484770 GCGTTGTAGATGCCCTTATGGA 60.485 50.000 0.00 0.00 35.39 3.41
130 131 3.804036 CGTTGTAGATGCCCTTATGGAA 58.196 45.455 0.00 0.00 35.39 3.53
131 132 3.560068 CGTTGTAGATGCCCTTATGGAAC 59.440 47.826 0.00 0.00 35.39 3.62
147 148 4.348020 TGGAACAGAGGGAGTATTACCT 57.652 45.455 0.00 0.00 40.54 3.08
148 149 5.476950 TGGAACAGAGGGAGTATTACCTA 57.523 43.478 0.00 0.00 37.18 3.08
149 150 5.206587 TGGAACAGAGGGAGTATTACCTAC 58.793 45.833 0.00 0.00 37.18 3.18
150 151 4.277921 GGAACAGAGGGAGTATTACCTACG 59.722 50.000 0.00 0.00 37.18 3.51
151 152 4.516652 ACAGAGGGAGTATTACCTACGT 57.483 45.455 0.00 0.00 37.18 3.57
152 153 4.205587 ACAGAGGGAGTATTACCTACGTG 58.794 47.826 0.00 0.00 37.18 4.49
153 154 3.004524 CAGAGGGAGTATTACCTACGTGC 59.995 52.174 0.00 0.00 37.18 5.34
154 155 2.295629 GAGGGAGTATTACCTACGTGCC 59.704 54.545 0.00 0.00 37.18 5.01
155 156 2.034124 GGGAGTATTACCTACGTGCCA 58.966 52.381 0.00 0.00 35.35 4.92
156 157 2.431782 GGGAGTATTACCTACGTGCCAA 59.568 50.000 0.00 0.00 35.35 4.52
157 158 3.118665 GGGAGTATTACCTACGTGCCAAA 60.119 47.826 0.00 0.00 35.35 3.28
158 159 4.506758 GGAGTATTACCTACGTGCCAAAA 58.493 43.478 0.00 0.00 35.35 2.44
159 160 5.121105 GGAGTATTACCTACGTGCCAAAAT 58.879 41.667 0.00 0.00 35.35 1.82
160 161 6.282930 GGAGTATTACCTACGTGCCAAAATA 58.717 40.000 0.00 0.00 35.35 1.40
161 162 6.201615 GGAGTATTACCTACGTGCCAAAATAC 59.798 42.308 0.00 6.44 35.35 1.89
162 163 6.642430 AGTATTACCTACGTGCCAAAATACA 58.358 36.000 17.29 0.00 35.35 2.29
163 164 7.277396 AGTATTACCTACGTGCCAAAATACAT 58.723 34.615 17.29 6.88 35.35 2.29
164 165 5.804692 TTACCTACGTGCCAAAATACATG 57.195 39.130 0.00 0.00 0.00 3.21
165 166 3.945346 ACCTACGTGCCAAAATACATGA 58.055 40.909 0.00 0.00 0.00 3.07
166 167 3.687698 ACCTACGTGCCAAAATACATGAC 59.312 43.478 0.00 0.00 0.00 3.06
167 168 3.938963 CCTACGTGCCAAAATACATGACT 59.061 43.478 0.00 0.00 0.00 3.41
168 169 4.394920 CCTACGTGCCAAAATACATGACTT 59.605 41.667 0.00 0.00 0.00 3.01
169 170 4.846779 ACGTGCCAAAATACATGACTTT 57.153 36.364 0.00 0.00 0.00 2.66
170 171 5.195001 ACGTGCCAAAATACATGACTTTT 57.805 34.783 0.00 1.89 0.00 2.27
171 172 6.320494 ACGTGCCAAAATACATGACTTTTA 57.680 33.333 0.00 0.00 0.00 1.52
172 173 6.146898 ACGTGCCAAAATACATGACTTTTAC 58.853 36.000 0.00 2.06 0.00 2.01
173 174 5.571357 CGTGCCAAAATACATGACTTTTACC 59.429 40.000 0.00 0.81 0.00 2.85
174 175 6.451393 GTGCCAAAATACATGACTTTTACCA 58.549 36.000 0.00 3.16 0.00 3.25
175 176 6.926272 GTGCCAAAATACATGACTTTTACCAA 59.074 34.615 0.00 0.00 0.00 3.67
176 177 7.439655 GTGCCAAAATACATGACTTTTACCAAA 59.560 33.333 0.00 0.00 0.00 3.28
177 178 7.987458 TGCCAAAATACATGACTTTTACCAAAA 59.013 29.630 0.00 0.00 0.00 2.44
178 179 8.279800 GCCAAAATACATGACTTTTACCAAAAC 58.720 33.333 0.00 0.00 0.00 2.43
179 180 8.484008 CCAAAATACATGACTTTTACCAAAACG 58.516 33.333 0.00 0.00 0.00 3.60
180 181 9.026074 CAAAATACATGACTTTTACCAAAACGT 57.974 29.630 0.00 0.00 30.38 3.99
181 182 8.791355 AAATACATGACTTTTACCAAAACGTC 57.209 30.769 0.00 1.75 41.72 4.34
196 197 8.795842 ACCAAAACGTCATATATTTTACTCCA 57.204 30.769 0.00 0.00 0.00 3.86
197 198 8.671028 ACCAAAACGTCATATATTTTACTCCAC 58.329 33.333 0.00 0.00 0.00 4.02
198 199 7.849026 CCAAAACGTCATATATTTTACTCCACG 59.151 37.037 0.00 0.00 0.00 4.94
199 200 8.385111 CAAAACGTCATATATTTTACTCCACGT 58.615 33.333 0.00 0.00 39.50 4.49
200 201 8.483307 AAACGTCATATATTTTACTCCACGTT 57.517 30.769 0.00 0.00 46.65 3.99
201 202 8.483307 AACGTCATATATTTTACTCCACGTTT 57.517 30.769 0.00 0.00 43.34 3.60
202 203 8.123445 ACGTCATATATTTTACTCCACGTTTC 57.877 34.615 0.00 0.00 34.47 2.78
203 204 7.760794 ACGTCATATATTTTACTCCACGTTTCA 59.239 33.333 0.00 0.00 34.47 2.69
204 205 8.597227 CGTCATATATTTTACTCCACGTTTCAA 58.403 33.333 0.00 0.00 0.00 2.69
212 213 7.979115 TTTACTCCACGTTTCAAAATTCTTG 57.021 32.000 0.00 0.00 0.00 3.02
213 214 5.576447 ACTCCACGTTTCAAAATTCTTGT 57.424 34.783 0.00 0.00 0.00 3.16
214 215 5.578776 ACTCCACGTTTCAAAATTCTTGTC 58.421 37.500 0.00 0.00 0.00 3.18
215 216 5.357032 ACTCCACGTTTCAAAATTCTTGTCT 59.643 36.000 0.00 0.00 0.00 3.41
216 217 6.127730 ACTCCACGTTTCAAAATTCTTGTCTT 60.128 34.615 0.00 0.00 0.00 3.01
217 218 7.066525 ACTCCACGTTTCAAAATTCTTGTCTTA 59.933 33.333 0.00 0.00 0.00 2.10
218 219 7.414436 TCCACGTTTCAAAATTCTTGTCTTAG 58.586 34.615 0.00 0.00 0.00 2.18
219 220 7.281324 TCCACGTTTCAAAATTCTTGTCTTAGA 59.719 33.333 0.00 0.00 0.00 2.10
220 221 8.076178 CCACGTTTCAAAATTCTTGTCTTAGAT 58.924 33.333 0.00 0.00 0.00 1.98
221 222 9.450807 CACGTTTCAAAATTCTTGTCTTAGATT 57.549 29.630 0.00 0.00 0.00 2.40
311 312 6.966534 AAGAAGGAGTATATTTTGGCATGG 57.033 37.500 0.00 0.00 0.00 3.66
312 313 6.266131 AGAAGGAGTATATTTTGGCATGGA 57.734 37.500 0.00 0.00 0.00 3.41
313 314 6.302269 AGAAGGAGTATATTTTGGCATGGAG 58.698 40.000 0.00 0.00 0.00 3.86
314 315 4.990526 AGGAGTATATTTTGGCATGGAGG 58.009 43.478 0.00 0.00 0.00 4.30
315 316 4.416848 AGGAGTATATTTTGGCATGGAGGT 59.583 41.667 0.00 0.00 0.00 3.85
316 317 5.610982 AGGAGTATATTTTGGCATGGAGGTA 59.389 40.000 0.00 0.00 0.00 3.08
317 318 5.940470 GGAGTATATTTTGGCATGGAGGTAG 59.060 44.000 0.00 0.00 0.00 3.18
318 319 6.465894 GGAGTATATTTTGGCATGGAGGTAGT 60.466 42.308 0.00 0.00 0.00 2.73
319 320 7.256547 GGAGTATATTTTGGCATGGAGGTAGTA 60.257 40.741 0.00 0.00 0.00 1.82
320 321 8.041143 AGTATATTTTGGCATGGAGGTAGTAA 57.959 34.615 0.00 0.00 0.00 2.24
321 322 8.157476 AGTATATTTTGGCATGGAGGTAGTAAG 58.843 37.037 0.00 0.00 0.00 2.34
322 323 2.710096 TTGGCATGGAGGTAGTAAGC 57.290 50.000 0.00 0.00 0.00 3.09
323 324 1.879575 TGGCATGGAGGTAGTAAGCT 58.120 50.000 0.00 0.00 35.73 3.74
333 334 1.605710 GGTAGTAAGCTGCATGCATGG 59.394 52.381 27.34 12.00 45.94 3.66
336 337 2.662866 AGTAAGCTGCATGCATGGAAT 58.337 42.857 27.34 15.74 45.94 3.01
353 358 7.576750 CATGGAATGCAAATGAATATAGCAC 57.423 36.000 0.00 0.00 37.62 4.40
359 364 4.141680 GCAAATGAATATAGCACGTACGC 58.858 43.478 16.72 0.00 0.00 4.42
429 2253 0.461870 TGTGCGCAAACAGACAGACT 60.462 50.000 14.00 0.00 0.00 3.24
484 2319 4.457496 GCGCTCTGCCTGCTGGTA 62.457 66.667 11.69 5.82 37.76 3.25
621 2464 2.292794 GACCGGCCAACTATCGCTCA 62.293 60.000 0.00 0.00 0.00 4.26
860 2719 4.662961 TCAGCCACACCACGAGCG 62.663 66.667 0.00 0.00 0.00 5.03
864 2723 4.969196 CCACACCACGAGCGCAGT 62.969 66.667 11.47 6.42 0.00 4.40
1045 2925 2.665603 GCTTCAACGAGGAGCCCT 59.334 61.111 2.09 0.00 36.03 5.19
1263 3146 2.798689 CTGTACCGCGAGCTGCTA 59.201 61.111 8.23 0.00 43.27 3.49
1575 3482 3.131396 GTCCAACGACATGTTCAAGAGT 58.869 45.455 0.00 0.00 39.29 3.24
1576 3483 3.560068 GTCCAACGACATGTTCAAGAGTT 59.440 43.478 0.00 0.00 39.29 3.01
1792 3729 0.606673 GTTGGACCACTTCAGGCTCC 60.607 60.000 0.00 0.00 32.68 4.70
1796 3733 0.670854 GACCACTTCAGGCTCCGAAC 60.671 60.000 0.00 0.00 0.00 3.95
1807 3744 3.449227 TCCGAACGGAGCGCTGAT 61.449 61.111 18.48 0.00 39.76 2.90
1808 3745 2.956964 CCGAACGGAGCGCTGATC 60.957 66.667 18.48 4.55 37.50 2.92
1829 3766 7.500992 TGATCTGATGTATCTTCAGTTTACCC 58.499 38.462 0.00 0.00 41.13 3.69
1848 3785 3.064931 CCCCTTCTCGTGTTTAAGTGTC 58.935 50.000 0.00 0.00 0.00 3.67
1852 3789 4.085210 CCTTCTCGTGTTTAAGTGTCGAAC 60.085 45.833 0.00 0.00 0.00 3.95
1903 3840 5.187687 GGGCATTCAATCATGGATTTGTTT 58.812 37.500 0.00 0.00 28.87 2.83
1908 3845 9.710979 GCATTCAATCATGGATTTGTTTATTTG 57.289 29.630 0.00 0.00 28.87 2.32
1952 3889 6.527722 CCATGGATTTGTTAACGAACTGATTG 59.472 38.462 5.56 5.65 36.45 2.67
1953 3890 6.869315 TGGATTTGTTAACGAACTGATTGA 57.131 33.333 10.52 0.00 36.45 2.57
1954 3891 7.265647 TGGATTTGTTAACGAACTGATTGAA 57.734 32.000 10.52 0.00 36.45 2.69
1955 3892 7.136119 TGGATTTGTTAACGAACTGATTGAAC 58.864 34.615 10.52 0.00 36.45 3.18
1956 3893 7.012894 TGGATTTGTTAACGAACTGATTGAACT 59.987 33.333 10.52 0.00 36.45 3.01
1957 3894 8.500773 GGATTTGTTAACGAACTGATTGAACTA 58.499 33.333 10.52 0.00 36.45 2.24
1958 3895 9.530129 GATTTGTTAACGAACTGATTGAACTAG 57.470 33.333 10.52 0.00 36.45 2.57
1959 3896 7.416154 TTGTTAACGAACTGATTGAACTAGG 57.584 36.000 0.26 0.00 36.45 3.02
1960 3897 5.407387 TGTTAACGAACTGATTGAACTAGGC 59.593 40.000 0.26 0.00 36.45 3.93
1961 3898 3.963428 ACGAACTGATTGAACTAGGCT 57.037 42.857 0.00 0.00 0.00 4.58
1962 3899 3.589988 ACGAACTGATTGAACTAGGCTG 58.410 45.455 0.00 0.00 0.00 4.85
1963 3900 2.349886 CGAACTGATTGAACTAGGCTGC 59.650 50.000 0.00 0.00 0.00 5.25
1964 3901 3.338249 GAACTGATTGAACTAGGCTGCA 58.662 45.455 0.50 0.00 0.00 4.41
1965 3902 2.983229 ACTGATTGAACTAGGCTGCAG 58.017 47.619 10.11 10.11 0.00 4.41
1966 3903 1.669779 CTGATTGAACTAGGCTGCAGC 59.330 52.381 30.88 30.88 41.14 5.25
1983 3920 2.187946 CCTAGTGGCAAGGGAGCG 59.812 66.667 0.00 0.00 34.64 5.03
1984 3921 2.512515 CTAGTGGCAAGGGAGCGC 60.513 66.667 0.00 0.00 34.64 5.92
1985 3922 3.315142 CTAGTGGCAAGGGAGCGCA 62.315 63.158 11.47 0.00 34.64 6.09
1986 3923 3.315142 TAGTGGCAAGGGAGCGCAG 62.315 63.158 11.47 0.00 34.64 5.18
2004 3941 3.555324 TGGCGTCTCCAGCAACCA 61.555 61.111 0.00 0.00 40.72 3.67
2005 3942 2.743928 GGCGTCTCCAGCAACCAG 60.744 66.667 0.00 0.00 36.08 4.00
2006 3943 2.743928 GCGTCTCCAGCAACCAGG 60.744 66.667 0.00 0.00 34.19 4.45
2007 3944 2.046892 CGTCTCCAGCAACCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
2008 3945 2.883828 CGTCTCCAGCAACCAGGGT 61.884 63.158 0.00 0.00 0.00 4.34
2009 3946 1.456287 GTCTCCAGCAACCAGGGTT 59.544 57.895 0.00 0.00 39.13 4.11
2010 3947 0.606673 GTCTCCAGCAACCAGGGTTC 60.607 60.000 0.00 0.00 36.00 3.62
2011 3948 1.672356 CTCCAGCAACCAGGGTTCG 60.672 63.158 0.00 0.00 36.00 3.95
2012 3949 2.111999 CTCCAGCAACCAGGGTTCGA 62.112 60.000 0.00 0.00 36.00 3.71
2013 3950 1.672356 CCAGCAACCAGGGTTCGAG 60.672 63.158 0.00 0.00 36.00 4.04
2014 3951 2.032681 AGCAACCAGGGTTCGAGC 59.967 61.111 0.00 2.37 36.00 5.03
2015 3952 3.056328 GCAACCAGGGTTCGAGCC 61.056 66.667 10.28 10.28 36.00 4.70
2016 3953 2.429930 CAACCAGGGTTCGAGCCA 59.570 61.111 20.67 0.00 38.48 4.75
2017 3954 1.002134 CAACCAGGGTTCGAGCCAT 60.002 57.895 20.67 10.64 38.48 4.40
2018 3955 1.002134 AACCAGGGTTCGAGCCATG 60.002 57.895 23.98 23.98 38.48 3.66
2019 3956 1.779061 AACCAGGGTTCGAGCCATGT 61.779 55.000 27.49 15.16 38.53 3.21
2020 3957 1.450312 CCAGGGTTCGAGCCATGTC 60.450 63.158 27.49 8.07 38.53 3.06
2021 3958 1.811266 CAGGGTTCGAGCCATGTCG 60.811 63.158 22.86 0.00 38.48 4.35
2022 3959 2.511600 GGGTTCGAGCCATGTCGG 60.512 66.667 20.67 0.00 40.49 4.79
2023 3960 2.511600 GGTTCGAGCCATGTCGGG 60.512 66.667 14.14 0.00 40.49 5.14
2024 3961 2.511600 GTTCGAGCCATGTCGGGG 60.512 66.667 5.95 0.00 40.49 5.73
2025 3962 2.682136 TTCGAGCCATGTCGGGGA 60.682 61.111 5.95 0.00 40.49 4.81
2026 3963 3.014085 TTCGAGCCATGTCGGGGAC 62.014 63.158 5.95 0.00 40.49 4.46
2041 3978 2.791655 GGGGACGAATTTCTGGTTTCT 58.208 47.619 0.00 0.00 0.00 2.52
2042 3979 2.747989 GGGGACGAATTTCTGGTTTCTC 59.252 50.000 0.00 0.00 0.00 2.87
2043 3980 3.408634 GGGACGAATTTCTGGTTTCTCA 58.591 45.455 0.00 0.00 0.00 3.27
2044 3981 3.188667 GGGACGAATTTCTGGTTTCTCAC 59.811 47.826 0.00 0.00 0.00 3.51
2045 3982 3.813166 GGACGAATTTCTGGTTTCTCACA 59.187 43.478 0.00 0.00 0.00 3.58
2046 3983 4.274950 GGACGAATTTCTGGTTTCTCACAA 59.725 41.667 0.00 0.00 0.00 3.33
2047 3984 5.424121 ACGAATTTCTGGTTTCTCACAAG 57.576 39.130 0.00 0.00 0.00 3.16
2048 3985 4.275936 ACGAATTTCTGGTTTCTCACAAGG 59.724 41.667 0.00 0.00 0.00 3.61
2049 3986 4.320494 CGAATTTCTGGTTTCTCACAAGGG 60.320 45.833 0.00 0.00 0.00 3.95
2050 3987 3.943671 TTTCTGGTTTCTCACAAGGGA 57.056 42.857 0.00 0.00 0.00 4.20
2051 3988 4.453480 TTTCTGGTTTCTCACAAGGGAT 57.547 40.909 0.00 0.00 0.00 3.85
2052 3989 3.423539 TCTGGTTTCTCACAAGGGATG 57.576 47.619 0.00 0.00 0.00 3.51
2053 3990 1.815003 CTGGTTTCTCACAAGGGATGC 59.185 52.381 0.00 0.00 0.00 3.91
2054 3991 1.425066 TGGTTTCTCACAAGGGATGCT 59.575 47.619 0.00 0.00 0.00 3.79
2055 3992 2.158475 TGGTTTCTCACAAGGGATGCTT 60.158 45.455 0.00 0.00 0.00 3.91
2056 3993 2.489722 GGTTTCTCACAAGGGATGCTTC 59.510 50.000 0.00 0.00 0.00 3.86
2057 3994 3.416156 GTTTCTCACAAGGGATGCTTCT 58.584 45.455 0.00 0.00 0.00 2.85
2058 3995 3.340814 TTCTCACAAGGGATGCTTCTC 57.659 47.619 0.00 0.00 0.00 2.87
2059 3996 1.556911 TCTCACAAGGGATGCTTCTCC 59.443 52.381 0.00 0.00 34.31 3.71
2060 3997 1.558756 CTCACAAGGGATGCTTCTCCT 59.441 52.381 0.00 0.25 35.50 3.69
2061 3998 2.768527 CTCACAAGGGATGCTTCTCCTA 59.231 50.000 9.18 0.00 35.50 2.94
2062 3999 3.387962 TCACAAGGGATGCTTCTCCTAT 58.612 45.455 9.18 1.24 35.50 2.57
2063 4000 4.556697 TCACAAGGGATGCTTCTCCTATA 58.443 43.478 9.18 0.00 35.50 1.31
2064 4001 5.158141 TCACAAGGGATGCTTCTCCTATAT 58.842 41.667 9.18 0.00 35.50 0.86
2065 4002 5.247110 TCACAAGGGATGCTTCTCCTATATC 59.753 44.000 9.18 0.00 35.50 1.63
2066 4003 5.012458 CACAAGGGATGCTTCTCCTATATCA 59.988 44.000 9.18 0.00 35.50 2.15
2067 4004 5.608437 ACAAGGGATGCTTCTCCTATATCAA 59.392 40.000 9.18 0.00 35.50 2.57
2068 4005 6.274200 ACAAGGGATGCTTCTCCTATATCAAT 59.726 38.462 9.18 0.00 35.50 2.57
2069 4006 7.459125 ACAAGGGATGCTTCTCCTATATCAATA 59.541 37.037 9.18 0.00 35.50 1.90
2070 4007 8.324306 CAAGGGATGCTTCTCCTATATCAATAA 58.676 37.037 9.18 0.00 35.50 1.40
2071 4008 8.454859 AGGGATGCTTCTCCTATATCAATAAA 57.545 34.615 7.56 0.00 35.50 1.40
2072 4009 8.325046 AGGGATGCTTCTCCTATATCAATAAAC 58.675 37.037 7.56 0.00 35.50 2.01
2073 4010 7.554476 GGGATGCTTCTCCTATATCAATAAACC 59.446 40.741 0.00 0.00 35.50 3.27
2074 4011 8.103305 GGATGCTTCTCCTATATCAATAAACCA 58.897 37.037 0.00 0.00 32.18 3.67
2075 4012 9.678260 GATGCTTCTCCTATATCAATAAACCAT 57.322 33.333 0.00 0.00 0.00 3.55
2077 4014 9.288576 TGCTTCTCCTATATCAATAAACCATTG 57.711 33.333 0.00 0.00 44.69 2.82
2078 4015 8.734386 GCTTCTCCTATATCAATAAACCATTGG 58.266 37.037 0.00 0.00 43.68 3.16
2079 4016 9.236006 CTTCTCCTATATCAATAAACCATTGGG 57.764 37.037 7.78 0.00 43.68 4.12
2090 4027 3.175133 CCATTGGGTGCTAGTGTCC 57.825 57.895 0.00 0.00 0.00 4.02
2091 4028 0.327924 CCATTGGGTGCTAGTGTCCA 59.672 55.000 0.00 0.00 0.00 4.02
2092 4029 1.064463 CCATTGGGTGCTAGTGTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
2093 4030 2.019249 CATTGGGTGCTAGTGTCCATG 58.981 52.381 0.00 0.00 0.00 3.66
2094 4031 1.357137 TTGGGTGCTAGTGTCCATGA 58.643 50.000 0.00 0.00 0.00 3.07
2095 4032 0.904649 TGGGTGCTAGTGTCCATGAG 59.095 55.000 0.00 0.00 0.00 2.90
2096 4033 0.905357 GGGTGCTAGTGTCCATGAGT 59.095 55.000 0.00 0.00 0.00 3.41
2097 4034 1.279271 GGGTGCTAGTGTCCATGAGTT 59.721 52.381 0.00 0.00 0.00 3.01
2098 4035 2.290323 GGGTGCTAGTGTCCATGAGTTT 60.290 50.000 0.00 0.00 0.00 2.66
2099 4036 3.003480 GGTGCTAGTGTCCATGAGTTTC 58.997 50.000 0.00 0.00 0.00 2.78
2100 4037 3.557054 GGTGCTAGTGTCCATGAGTTTCA 60.557 47.826 0.00 0.00 0.00 2.69
2101 4038 4.256920 GTGCTAGTGTCCATGAGTTTCAT 58.743 43.478 0.00 0.00 37.65 2.57
2102 4039 4.331168 GTGCTAGTGTCCATGAGTTTCATC 59.669 45.833 0.00 0.00 34.28 2.92
2103 4040 4.223700 TGCTAGTGTCCATGAGTTTCATCT 59.776 41.667 0.00 0.00 34.28 2.90
2104 4041 5.181748 GCTAGTGTCCATGAGTTTCATCTT 58.818 41.667 0.00 0.00 34.28 2.40
2105 4042 5.645497 GCTAGTGTCCATGAGTTTCATCTTT 59.355 40.000 0.00 0.00 34.28 2.52
2106 4043 6.150140 GCTAGTGTCCATGAGTTTCATCTTTT 59.850 38.462 0.00 0.00 34.28 2.27
2107 4044 6.966534 AGTGTCCATGAGTTTCATCTTTTT 57.033 33.333 0.00 0.00 34.28 1.94
2142 4082 5.839262 TTCAGTGAGTACGTATTTGCTTG 57.161 39.130 0.00 0.00 0.00 4.01
2174 4114 2.840974 CGTCAGTCGCCTGGAAAAT 58.159 52.632 0.00 0.00 39.31 1.82
2197 4138 9.853177 AAATATTCAGTTTATCGATTTCCCTCT 57.147 29.630 1.71 0.00 0.00 3.69
2201 4142 6.947464 TCAGTTTATCGATTTCCCTCTTTCT 58.053 36.000 1.71 0.00 0.00 2.52
2213 4154 4.708177 TCCCTCTTTCTGTTTCAGTTCAG 58.292 43.478 0.00 0.00 32.61 3.02
2224 4165 0.321919 TCAGTTCAGCTGTGGCCATC 60.322 55.000 9.72 3.12 45.23 3.51
2288 4229 1.417890 CTCTAAACCTCCCCGCATCAT 59.582 52.381 0.00 0.00 0.00 2.45
2305 4246 3.093717 TCATATTTTCTCCGGCGAGTC 57.906 47.619 9.30 0.00 37.40 3.36
2306 4247 2.693591 TCATATTTTCTCCGGCGAGTCT 59.306 45.455 9.30 0.00 37.40 3.24
2307 4248 3.887110 TCATATTTTCTCCGGCGAGTCTA 59.113 43.478 9.30 0.00 37.40 2.59
2316 4265 1.516423 GGCGAGTCTACACCCCTTC 59.484 63.158 0.00 0.00 0.00 3.46
2325 4274 4.029809 CACCCCTTCACCGACCCC 62.030 72.222 0.00 0.00 0.00 4.95
2332 4281 1.006337 TTCACCGACCCCGTTAACG 60.006 57.895 20.99 20.99 39.44 3.18
2351 4300 1.000771 TCTGACTCTCCTCCACCGG 60.001 63.158 0.00 0.00 0.00 5.28
2355 4304 3.827898 CTCTCCTCCACCGGCGAC 61.828 72.222 9.30 0.00 0.00 5.19
2373 4322 3.681835 GCCACTCCCGTGTCGTCT 61.682 66.667 0.00 0.00 39.55 4.18
2374 4323 2.567049 CCACTCCCGTGTCGTCTC 59.433 66.667 0.00 0.00 39.55 3.36
2380 4329 4.477975 CCGTGTCGTCTCGGGCTC 62.478 72.222 14.07 0.00 44.01 4.70
2433 4382 9.638239 CCATGCAAACCCATATTTACATATTAC 57.362 33.333 0.00 0.00 0.00 1.89
2510 4461 8.731275 TGACAGAAAATAGAAGTGAAAGAACA 57.269 30.769 0.00 0.00 0.00 3.18
2511 4462 9.173021 TGACAGAAAATAGAAGTGAAAGAACAA 57.827 29.630 0.00 0.00 0.00 2.83
2553 4504 8.516234 TGACAAAAGAAAAAGTTGTGCTAAGTA 58.484 29.630 0.00 0.00 35.67 2.24
2554 4505 8.911247 ACAAAAGAAAAAGTTGTGCTAAGTAG 57.089 30.769 0.00 0.00 34.28 2.57
2589 4540 7.993821 TTTAGTTAATTCTCGATGAGAGCTG 57.006 36.000 0.00 0.00 46.44 4.24
2593 4544 1.680522 TTCTCGATGAGAGCTGGCCC 61.681 60.000 0.00 0.00 46.44 5.80
2594 4545 2.364186 TCGATGAGAGCTGGCCCA 60.364 61.111 0.00 0.00 0.00 5.36
2595 4546 2.202987 CGATGAGAGCTGGCCCAC 60.203 66.667 0.00 0.00 0.00 4.61
2597 4548 1.451028 GATGAGAGCTGGCCCACAC 60.451 63.158 0.00 0.00 0.00 3.82
2598 4549 1.908340 GATGAGAGCTGGCCCACACT 61.908 60.000 0.00 0.00 0.00 3.55
2601 4552 1.908340 GAGAGCTGGCCCACACTCAT 61.908 60.000 12.67 0.00 32.87 2.90
2602 4553 1.748122 GAGCTGGCCCACACTCATG 60.748 63.158 0.00 0.00 31.64 3.07
2603 4554 2.189191 GAGCTGGCCCACACTCATGA 62.189 60.000 0.00 0.00 31.64 3.07
2604 4555 1.303561 GCTGGCCCACACTCATGAA 60.304 57.895 0.00 0.00 0.00 2.57
2605 4556 1.589716 GCTGGCCCACACTCATGAAC 61.590 60.000 0.00 0.00 0.00 3.18
2606 4557 0.962356 CTGGCCCACACTCATGAACC 60.962 60.000 0.00 0.00 0.00 3.62
2607 4558 1.380302 GGCCCACACTCATGAACCT 59.620 57.895 0.00 0.00 0.00 3.50
2608 4559 0.618458 GGCCCACACTCATGAACCTA 59.382 55.000 0.00 0.00 0.00 3.08
2609 4560 1.004277 GGCCCACACTCATGAACCTAA 59.996 52.381 0.00 0.00 0.00 2.69
2610 4561 2.359900 GCCCACACTCATGAACCTAAG 58.640 52.381 0.00 0.00 0.00 2.18
2611 4562 2.290323 GCCCACACTCATGAACCTAAGT 60.290 50.000 0.00 0.00 0.00 2.24
2612 4563 3.810743 GCCCACACTCATGAACCTAAGTT 60.811 47.826 0.00 0.00 39.54 2.66
2613 4564 4.398319 CCCACACTCATGAACCTAAGTTT 58.602 43.478 0.00 0.00 35.94 2.66
2614 4565 5.556915 CCCACACTCATGAACCTAAGTTTA 58.443 41.667 0.00 0.00 35.94 2.01
2615 4566 5.411669 CCCACACTCATGAACCTAAGTTTAC 59.588 44.000 0.00 0.00 35.94 2.01
2616 4567 5.995282 CCACACTCATGAACCTAAGTTTACA 59.005 40.000 0.00 0.00 35.94 2.41
2617 4568 6.485313 CCACACTCATGAACCTAAGTTTACAA 59.515 38.462 0.00 0.00 35.94 2.41
2618 4569 7.012894 CCACACTCATGAACCTAAGTTTACAAA 59.987 37.037 0.00 0.00 35.94 2.83
2619 4570 8.402472 CACACTCATGAACCTAAGTTTACAAAA 58.598 33.333 0.00 0.00 35.94 2.44
2620 4571 8.962679 ACACTCATGAACCTAAGTTTACAAAAA 58.037 29.630 0.00 0.00 35.94 1.94
2641 4592 4.724074 AACGATAGGTTTGACGGTATGA 57.276 40.909 0.00 0.00 43.77 2.15
2651 4602 7.434492 AGGTTTGACGGTATGAGATACAATAG 58.566 38.462 0.00 0.00 37.48 1.73
2691 4642 2.887568 GACTCATCTGCACCCGCG 60.888 66.667 0.00 0.00 42.97 6.46
2770 4722 4.150627 CCTCGTAGATAATTTGATGCGTGG 59.849 45.833 0.00 0.00 33.89 4.94
2772 4724 4.055360 CGTAGATAATTTGATGCGTGGGA 58.945 43.478 0.00 0.00 0.00 4.37
2773 4725 4.150627 CGTAGATAATTTGATGCGTGGGAG 59.849 45.833 0.00 0.00 0.00 4.30
2775 4727 2.418368 TAATTTGATGCGTGGGAGCT 57.582 45.000 0.00 0.00 38.13 4.09
2777 4729 0.322816 ATTTGATGCGTGGGAGCTGT 60.323 50.000 0.00 0.00 38.13 4.40
2779 4731 0.955428 TTGATGCGTGGGAGCTGTTC 60.955 55.000 0.00 0.00 38.13 3.18
2798 4750 9.558396 AGCTGTTCCAATTTTTAAATCATTTGA 57.442 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.928733 CAAGCTGCATACATTTTTCAAACTATT 58.071 29.630 1.02 0.00 0.00 1.73
1 2 8.090214 ACAAGCTGCATACATTTTTCAAACTAT 58.910 29.630 1.02 0.00 0.00 2.12
2 3 7.381948 CACAAGCTGCATACATTTTTCAAACTA 59.618 33.333 1.02 0.00 0.00 2.24
3 4 6.201425 CACAAGCTGCATACATTTTTCAAACT 59.799 34.615 1.02 0.00 0.00 2.66
4 5 6.018832 ACACAAGCTGCATACATTTTTCAAAC 60.019 34.615 1.02 0.00 0.00 2.93
5 6 6.047870 ACACAAGCTGCATACATTTTTCAAA 58.952 32.000 1.02 0.00 0.00 2.69
6 7 5.599732 ACACAAGCTGCATACATTTTTCAA 58.400 33.333 1.02 0.00 0.00 2.69
7 8 5.199024 ACACAAGCTGCATACATTTTTCA 57.801 34.783 1.02 0.00 0.00 2.69
8 9 5.107375 CCAACACAAGCTGCATACATTTTTC 60.107 40.000 1.02 0.00 0.00 2.29
9 10 4.751098 CCAACACAAGCTGCATACATTTTT 59.249 37.500 1.02 0.00 0.00 1.94
10 11 4.039004 TCCAACACAAGCTGCATACATTTT 59.961 37.500 1.02 0.00 0.00 1.82
11 12 3.573538 TCCAACACAAGCTGCATACATTT 59.426 39.130 1.02 0.00 0.00 2.32
12 13 3.156293 TCCAACACAAGCTGCATACATT 58.844 40.909 1.02 0.00 0.00 2.71
13 14 2.794103 TCCAACACAAGCTGCATACAT 58.206 42.857 1.02 0.00 0.00 2.29
14 15 2.268762 TCCAACACAAGCTGCATACA 57.731 45.000 1.02 0.00 0.00 2.29
15 16 2.749076 TCATCCAACACAAGCTGCATAC 59.251 45.455 1.02 0.00 0.00 2.39
16 17 2.749076 GTCATCCAACACAAGCTGCATA 59.251 45.455 1.02 0.00 0.00 3.14
17 18 1.542915 GTCATCCAACACAAGCTGCAT 59.457 47.619 1.02 0.00 0.00 3.96
18 19 0.953727 GTCATCCAACACAAGCTGCA 59.046 50.000 1.02 0.00 0.00 4.41
19 20 1.068748 CAGTCATCCAACACAAGCTGC 60.069 52.381 0.00 0.00 0.00 5.25
20 21 1.068748 GCAGTCATCCAACACAAGCTG 60.069 52.381 0.00 0.00 0.00 4.24
21 22 1.242076 GCAGTCATCCAACACAAGCT 58.758 50.000 0.00 0.00 0.00 3.74
22 23 0.242017 GGCAGTCATCCAACACAAGC 59.758 55.000 0.00 0.00 0.00 4.01
23 24 1.808945 GAGGCAGTCATCCAACACAAG 59.191 52.381 0.00 0.00 0.00 3.16
24 25 1.545428 GGAGGCAGTCATCCAACACAA 60.545 52.381 0.00 0.00 35.54 3.33
25 26 0.036732 GGAGGCAGTCATCCAACACA 59.963 55.000 0.00 0.00 35.54 3.72
26 27 0.678048 GGGAGGCAGTCATCCAACAC 60.678 60.000 0.00 0.00 37.33 3.32
27 28 1.685224 GGGAGGCAGTCATCCAACA 59.315 57.895 0.00 0.00 37.33 3.33
28 29 1.450312 CGGGAGGCAGTCATCCAAC 60.450 63.158 0.00 0.00 37.33 3.77
29 30 2.989639 CGGGAGGCAGTCATCCAA 59.010 61.111 0.00 0.00 37.33 3.53
30 31 3.785859 GCGGGAGGCAGTCATCCA 61.786 66.667 0.00 0.00 42.87 3.41
39 40 1.021390 CGAATATGGATGCGGGAGGC 61.021 60.000 0.00 0.00 43.96 4.70
40 41 1.021390 GCGAATATGGATGCGGGAGG 61.021 60.000 0.00 0.00 34.32 4.30
41 42 0.320683 TGCGAATATGGATGCGGGAG 60.321 55.000 0.00 0.00 34.32 4.30
42 43 0.320683 CTGCGAATATGGATGCGGGA 60.321 55.000 0.00 0.00 34.32 5.14
43 44 0.320683 TCTGCGAATATGGATGCGGG 60.321 55.000 0.00 0.00 34.32 6.13
44 45 0.792640 GTCTGCGAATATGGATGCGG 59.207 55.000 0.00 0.00 34.32 5.69
45 46 1.788258 AGTCTGCGAATATGGATGCG 58.212 50.000 0.00 0.00 37.15 4.73
46 47 3.919216 ACTAGTCTGCGAATATGGATGC 58.081 45.455 0.00 0.00 0.00 3.91
47 48 5.182950 AGAGACTAGTCTGCGAATATGGATG 59.817 44.000 29.84 0.00 40.61 3.51
48 49 5.321102 AGAGACTAGTCTGCGAATATGGAT 58.679 41.667 29.84 0.78 40.61 3.41
49 50 4.720046 AGAGACTAGTCTGCGAATATGGA 58.280 43.478 29.84 0.00 40.61 3.41
50 51 4.759693 AGAGAGACTAGTCTGCGAATATGG 59.240 45.833 29.84 0.00 40.61 2.74
51 52 5.940192 AGAGAGACTAGTCTGCGAATATG 57.060 43.478 29.84 0.00 40.61 1.78
52 53 6.544197 TGAAAGAGAGACTAGTCTGCGAATAT 59.456 38.462 29.84 9.64 40.61 1.28
53 54 5.880887 TGAAAGAGAGACTAGTCTGCGAATA 59.119 40.000 29.84 7.96 40.61 1.75
54 55 4.702612 TGAAAGAGAGACTAGTCTGCGAAT 59.297 41.667 29.84 12.77 40.61 3.34
55 56 4.072839 TGAAAGAGAGACTAGTCTGCGAA 58.927 43.478 29.84 6.15 40.61 4.70
56 57 3.676093 TGAAAGAGAGACTAGTCTGCGA 58.324 45.455 29.84 3.94 40.61 5.10
57 58 4.350346 CATGAAAGAGAGACTAGTCTGCG 58.650 47.826 29.84 4.57 40.61 5.18
58 59 4.400884 TCCATGAAAGAGAGACTAGTCTGC 59.599 45.833 29.84 19.91 40.61 4.26
59 60 5.417266 TGTCCATGAAAGAGAGACTAGTCTG 59.583 44.000 29.84 12.42 40.61 3.51
60 61 5.575157 TGTCCATGAAAGAGAGACTAGTCT 58.425 41.667 25.44 25.44 43.78 3.24
61 62 5.650266 TCTGTCCATGAAAGAGAGACTAGTC 59.350 44.000 15.41 15.41 29.38 2.59
62 63 5.575157 TCTGTCCATGAAAGAGAGACTAGT 58.425 41.667 0.00 0.00 29.38 2.57
63 64 6.506147 CATCTGTCCATGAAAGAGAGACTAG 58.494 44.000 0.00 0.00 36.58 2.57
64 65 5.163468 GCATCTGTCCATGAAAGAGAGACTA 60.163 44.000 0.00 0.00 36.58 2.59
65 66 4.382901 GCATCTGTCCATGAAAGAGAGACT 60.383 45.833 0.00 0.00 36.58 3.24
66 67 3.870419 GCATCTGTCCATGAAAGAGAGAC 59.130 47.826 0.00 0.00 36.58 3.36
67 68 3.516700 TGCATCTGTCCATGAAAGAGAGA 59.483 43.478 0.00 0.00 37.96 3.10
68 69 3.870274 TGCATCTGTCCATGAAAGAGAG 58.130 45.455 0.00 0.00 28.59 3.20
69 70 3.370209 CCTGCATCTGTCCATGAAAGAGA 60.370 47.826 0.00 0.00 28.59 3.10
70 71 2.943690 CCTGCATCTGTCCATGAAAGAG 59.056 50.000 0.00 0.00 28.59 2.85
71 72 2.573009 TCCTGCATCTGTCCATGAAAGA 59.427 45.455 0.00 0.00 29.77 2.52
72 73 2.943690 CTCCTGCATCTGTCCATGAAAG 59.056 50.000 0.00 0.00 0.00 2.62
73 74 2.573009 TCTCCTGCATCTGTCCATGAAA 59.427 45.455 0.00 0.00 0.00 2.69
74 75 2.190538 TCTCCTGCATCTGTCCATGAA 58.809 47.619 0.00 0.00 0.00 2.57
75 76 1.870064 TCTCCTGCATCTGTCCATGA 58.130 50.000 0.00 0.00 0.00 3.07
76 77 2.932855 ATCTCCTGCATCTGTCCATG 57.067 50.000 0.00 0.00 0.00 3.66
77 78 3.947612 AAATCTCCTGCATCTGTCCAT 57.052 42.857 0.00 0.00 0.00 3.41
78 79 3.726557 AAAATCTCCTGCATCTGTCCA 57.273 42.857 0.00 0.00 0.00 4.02
96 97 0.454600 TACAACGCAACCCGCAAAAA 59.545 45.000 0.00 0.00 42.60 1.94
97 98 0.029567 CTACAACGCAACCCGCAAAA 59.970 50.000 0.00 0.00 42.60 2.44
98 99 0.814410 TCTACAACGCAACCCGCAAA 60.814 50.000 0.00 0.00 42.60 3.68
99 100 0.604243 ATCTACAACGCAACCCGCAA 60.604 50.000 0.00 0.00 42.60 4.85
100 101 1.004320 ATCTACAACGCAACCCGCA 60.004 52.632 0.00 0.00 42.60 5.69
101 102 1.423845 CATCTACAACGCAACCCGC 59.576 57.895 0.00 0.00 41.76 6.13
102 103 1.423845 GCATCTACAACGCAACCCG 59.576 57.895 0.00 0.00 44.21 5.28
103 104 1.654023 GGGCATCTACAACGCAACCC 61.654 60.000 0.00 0.00 0.00 4.11
104 105 0.676782 AGGGCATCTACAACGCAACC 60.677 55.000 0.00 0.00 0.00 3.77
105 106 1.165270 AAGGGCATCTACAACGCAAC 58.835 50.000 0.00 0.00 0.00 4.17
106 107 2.772077 TAAGGGCATCTACAACGCAA 57.228 45.000 0.00 0.00 0.00 4.85
107 108 2.560504 CATAAGGGCATCTACAACGCA 58.439 47.619 0.00 0.00 0.00 5.24
108 109 1.873591 CCATAAGGGCATCTACAACGC 59.126 52.381 0.00 0.00 0.00 4.84
109 110 3.469008 TCCATAAGGGCATCTACAACG 57.531 47.619 0.00 0.00 36.21 4.10
110 111 4.523083 TGTTCCATAAGGGCATCTACAAC 58.477 43.478 0.00 0.00 36.21 3.32
111 112 4.473196 TCTGTTCCATAAGGGCATCTACAA 59.527 41.667 0.00 0.00 36.21 2.41
112 113 4.037222 TCTGTTCCATAAGGGCATCTACA 58.963 43.478 0.00 0.00 36.21 2.74
113 114 4.503991 CCTCTGTTCCATAAGGGCATCTAC 60.504 50.000 0.00 0.00 36.21 2.59
114 115 3.648067 CCTCTGTTCCATAAGGGCATCTA 59.352 47.826 0.00 0.00 36.21 1.98
115 116 2.441001 CCTCTGTTCCATAAGGGCATCT 59.559 50.000 0.00 0.00 36.21 2.90
116 117 2.487986 CCCTCTGTTCCATAAGGGCATC 60.488 54.545 0.00 0.00 41.98 3.91
117 118 1.496429 CCCTCTGTTCCATAAGGGCAT 59.504 52.381 0.00 0.00 41.98 4.40
118 119 0.918983 CCCTCTGTTCCATAAGGGCA 59.081 55.000 0.00 0.00 41.98 5.36
119 120 1.141858 CTCCCTCTGTTCCATAAGGGC 59.858 57.143 1.24 0.00 46.84 5.19
121 122 5.896073 AATACTCCCTCTGTTCCATAAGG 57.104 43.478 0.00 0.00 0.00 2.69
122 123 6.555360 AGGTAATACTCCCTCTGTTCCATAAG 59.445 42.308 0.00 0.00 0.00 1.73
123 124 6.449956 AGGTAATACTCCCTCTGTTCCATAA 58.550 40.000 0.00 0.00 0.00 1.90
124 125 6.039415 AGGTAATACTCCCTCTGTTCCATA 57.961 41.667 0.00 0.00 0.00 2.74
125 126 4.897051 AGGTAATACTCCCTCTGTTCCAT 58.103 43.478 0.00 0.00 0.00 3.41
126 127 4.348020 AGGTAATACTCCCTCTGTTCCA 57.652 45.455 0.00 0.00 0.00 3.53
127 128 4.277921 CGTAGGTAATACTCCCTCTGTTCC 59.722 50.000 0.00 0.00 32.08 3.62
128 129 4.886489 ACGTAGGTAATACTCCCTCTGTTC 59.114 45.833 0.00 0.00 32.08 3.18
129 130 4.643784 CACGTAGGTAATACTCCCTCTGTT 59.356 45.833 0.00 0.00 32.08 3.16
130 131 4.205587 CACGTAGGTAATACTCCCTCTGT 58.794 47.826 0.00 0.00 32.08 3.41
131 132 3.004524 GCACGTAGGTAATACTCCCTCTG 59.995 52.174 0.00 0.00 32.08 3.35
132 133 3.220940 GCACGTAGGTAATACTCCCTCT 58.779 50.000 0.00 0.00 32.08 3.69
133 134 2.295629 GGCACGTAGGTAATACTCCCTC 59.704 54.545 0.00 0.00 32.08 4.30
134 135 2.314246 GGCACGTAGGTAATACTCCCT 58.686 52.381 0.00 0.00 34.74 4.20
135 136 2.034124 TGGCACGTAGGTAATACTCCC 58.966 52.381 0.00 0.00 31.68 4.30
136 137 3.806625 TTGGCACGTAGGTAATACTCC 57.193 47.619 0.00 0.00 31.68 3.85
137 138 6.757947 TGTATTTTGGCACGTAGGTAATACTC 59.242 38.462 14.52 0.00 31.58 2.59
138 139 6.642430 TGTATTTTGGCACGTAGGTAATACT 58.358 36.000 14.52 0.00 31.58 2.12
139 140 6.907206 TGTATTTTGGCACGTAGGTAATAC 57.093 37.500 9.62 9.62 0.00 1.89
140 141 7.225145 GTCATGTATTTTGGCACGTAGGTAATA 59.775 37.037 0.00 0.00 0.00 0.98
141 142 6.037830 GTCATGTATTTTGGCACGTAGGTAAT 59.962 38.462 0.00 0.00 0.00 1.89
142 143 5.352016 GTCATGTATTTTGGCACGTAGGTAA 59.648 40.000 0.00 0.00 0.00 2.85
143 144 4.871557 GTCATGTATTTTGGCACGTAGGTA 59.128 41.667 0.00 0.00 0.00 3.08
144 145 3.687698 GTCATGTATTTTGGCACGTAGGT 59.312 43.478 0.00 0.00 0.00 3.08
145 146 3.938963 AGTCATGTATTTTGGCACGTAGG 59.061 43.478 0.00 0.00 0.00 3.18
146 147 5.545658 AAGTCATGTATTTTGGCACGTAG 57.454 39.130 0.00 0.00 0.00 3.51
147 148 5.950758 AAAGTCATGTATTTTGGCACGTA 57.049 34.783 0.00 0.00 0.00 3.57
148 149 4.846779 AAAGTCATGTATTTTGGCACGT 57.153 36.364 0.00 0.00 0.00 4.49
149 150 5.571357 GGTAAAAGTCATGTATTTTGGCACG 59.429 40.000 16.00 0.00 31.41 5.34
150 151 6.451393 TGGTAAAAGTCATGTATTTTGGCAC 58.549 36.000 16.00 9.34 31.41 5.01
151 152 6.656632 TGGTAAAAGTCATGTATTTTGGCA 57.343 33.333 16.00 0.00 31.41 4.92
152 153 7.954788 TTTGGTAAAAGTCATGTATTTTGGC 57.045 32.000 16.00 10.72 31.41 4.52
153 154 8.484008 CGTTTTGGTAAAAGTCATGTATTTTGG 58.516 33.333 16.00 0.00 31.41 3.28
154 155 9.026074 ACGTTTTGGTAAAAGTCATGTATTTTG 57.974 29.630 16.00 4.66 31.62 2.44
155 156 9.240159 GACGTTTTGGTAAAAGTCATGTATTTT 57.760 29.630 12.82 12.82 45.86 1.82
156 157 8.791355 GACGTTTTGGTAAAAGTCATGTATTT 57.209 30.769 10.40 0.00 45.86 1.40
170 171 9.887629 TGGAGTAAAATATATGACGTTTTGGTA 57.112 29.630 0.00 0.00 0.00 3.25
171 172 8.671028 GTGGAGTAAAATATATGACGTTTTGGT 58.329 33.333 0.00 0.00 0.00 3.67
172 173 7.849026 CGTGGAGTAAAATATATGACGTTTTGG 59.151 37.037 0.00 0.00 0.00 3.28
173 174 8.385111 ACGTGGAGTAAAATATATGACGTTTTG 58.615 33.333 0.00 0.00 34.07 2.44
174 175 8.483307 ACGTGGAGTAAAATATATGACGTTTT 57.517 30.769 0.00 0.00 34.07 2.43
175 176 8.483307 AACGTGGAGTAAAATATATGACGTTT 57.517 30.769 0.00 0.00 42.91 3.60
176 177 8.483307 AAACGTGGAGTAAAATATATGACGTT 57.517 30.769 0.00 0.00 46.20 3.99
177 178 7.760794 TGAAACGTGGAGTAAAATATATGACGT 59.239 33.333 0.00 0.00 39.05 4.34
178 179 8.122306 TGAAACGTGGAGTAAAATATATGACG 57.878 34.615 0.00 0.00 0.00 4.35
186 187 9.030301 CAAGAATTTTGAAACGTGGAGTAAAAT 57.970 29.630 0.00 0.00 32.75 1.82
187 188 8.030106 ACAAGAATTTTGAAACGTGGAGTAAAA 58.970 29.630 0.00 0.00 0.00 1.52
188 189 7.540299 ACAAGAATTTTGAAACGTGGAGTAAA 58.460 30.769 0.00 0.00 0.00 2.01
189 190 7.066525 AGACAAGAATTTTGAAACGTGGAGTAA 59.933 33.333 0.00 0.00 0.00 2.24
190 191 6.540914 AGACAAGAATTTTGAAACGTGGAGTA 59.459 34.615 0.00 0.00 0.00 2.59
191 192 5.357032 AGACAAGAATTTTGAAACGTGGAGT 59.643 36.000 0.00 0.00 0.00 3.85
192 193 5.821204 AGACAAGAATTTTGAAACGTGGAG 58.179 37.500 0.00 0.00 0.00 3.86
193 194 5.828299 AGACAAGAATTTTGAAACGTGGA 57.172 34.783 0.00 0.00 0.00 4.02
194 195 7.414436 TCTAAGACAAGAATTTTGAAACGTGG 58.586 34.615 0.00 0.00 0.00 4.94
195 196 9.450807 AATCTAAGACAAGAATTTTGAAACGTG 57.549 29.630 0.00 0.00 0.00 4.49
285 286 8.912988 CCATGCCAAAATATACTCCTTCTTTTA 58.087 33.333 0.00 0.00 0.00 1.52
286 287 7.619302 TCCATGCCAAAATATACTCCTTCTTTT 59.381 33.333 0.00 0.00 0.00 2.27
287 288 7.125391 TCCATGCCAAAATATACTCCTTCTTT 58.875 34.615 0.00 0.00 0.00 2.52
288 289 6.672593 TCCATGCCAAAATATACTCCTTCTT 58.327 36.000 0.00 0.00 0.00 2.52
289 290 6.266131 TCCATGCCAAAATATACTCCTTCT 57.734 37.500 0.00 0.00 0.00 2.85
290 291 5.474876 CCTCCATGCCAAAATATACTCCTTC 59.525 44.000 0.00 0.00 0.00 3.46
291 292 5.103515 ACCTCCATGCCAAAATATACTCCTT 60.104 40.000 0.00 0.00 0.00 3.36
292 293 4.416848 ACCTCCATGCCAAAATATACTCCT 59.583 41.667 0.00 0.00 0.00 3.69
293 294 4.729868 ACCTCCATGCCAAAATATACTCC 58.270 43.478 0.00 0.00 0.00 3.85
294 295 6.534634 ACTACCTCCATGCCAAAATATACTC 58.465 40.000 0.00 0.00 0.00 2.59
295 296 6.515512 ACTACCTCCATGCCAAAATATACT 57.484 37.500 0.00 0.00 0.00 2.12
296 297 7.094762 GCTTACTACCTCCATGCCAAAATATAC 60.095 40.741 0.00 0.00 0.00 1.47
297 298 6.940298 GCTTACTACCTCCATGCCAAAATATA 59.060 38.462 0.00 0.00 0.00 0.86
298 299 5.770162 GCTTACTACCTCCATGCCAAAATAT 59.230 40.000 0.00 0.00 0.00 1.28
299 300 5.104109 AGCTTACTACCTCCATGCCAAAATA 60.104 40.000 0.00 0.00 0.00 1.40
300 301 3.954258 GCTTACTACCTCCATGCCAAAAT 59.046 43.478 0.00 0.00 0.00 1.82
301 302 3.010138 AGCTTACTACCTCCATGCCAAAA 59.990 43.478 0.00 0.00 0.00 2.44
302 303 2.576191 AGCTTACTACCTCCATGCCAAA 59.424 45.455 0.00 0.00 0.00 3.28
303 304 2.092968 CAGCTTACTACCTCCATGCCAA 60.093 50.000 0.00 0.00 0.00 4.52
304 305 1.486310 CAGCTTACTACCTCCATGCCA 59.514 52.381 0.00 0.00 0.00 4.92
305 306 1.811941 GCAGCTTACTACCTCCATGCC 60.812 57.143 0.00 0.00 0.00 4.40
306 307 1.134401 TGCAGCTTACTACCTCCATGC 60.134 52.381 0.00 0.00 0.00 4.06
307 308 2.988010 TGCAGCTTACTACCTCCATG 57.012 50.000 0.00 0.00 0.00 3.66
308 309 2.486191 GCATGCAGCTTACTACCTCCAT 60.486 50.000 14.21 0.00 41.15 3.41
309 310 1.134401 GCATGCAGCTTACTACCTCCA 60.134 52.381 14.21 0.00 41.15 3.86
310 311 1.134401 TGCATGCAGCTTACTACCTCC 60.134 52.381 18.46 0.00 45.94 4.30
311 312 2.315925 TGCATGCAGCTTACTACCTC 57.684 50.000 18.46 0.00 45.94 3.85
312 313 2.569059 CATGCATGCAGCTTACTACCT 58.431 47.619 26.69 1.43 45.94 3.08
313 314 1.605710 CCATGCATGCAGCTTACTACC 59.394 52.381 26.69 0.00 45.94 3.18
314 315 2.564771 TCCATGCATGCAGCTTACTAC 58.435 47.619 26.69 0.00 45.94 2.73
315 316 3.280197 TTCCATGCATGCAGCTTACTA 57.720 42.857 26.69 4.62 45.94 1.82
316 317 2.133281 TTCCATGCATGCAGCTTACT 57.867 45.000 26.69 4.78 45.94 2.24
317 318 2.739292 CATTCCATGCATGCAGCTTAC 58.261 47.619 26.69 0.00 45.94 2.34
333 334 6.516355 CGTACGTGCTATATTCATTTGCATTC 59.484 38.462 7.22 0.00 36.04 2.67
336 337 4.318475 GCGTACGTGCTATATTCATTTGCA 60.318 41.667 17.90 0.00 0.00 4.08
359 364 3.467119 GTACGAGGTGTGCGCACG 61.467 66.667 33.22 23.93 46.13 5.34
429 2253 1.550327 CTGGCTACTCTGTCCTGTCA 58.450 55.000 0.00 0.00 0.00 3.58
434 2258 1.153745 CACGCTGGCTACTCTGTCC 60.154 63.158 0.00 0.00 0.00 4.02
484 2319 0.107508 CCATCTTCCACGCATCCAGT 60.108 55.000 0.00 0.00 0.00 4.00
614 2457 0.324368 TGGAGGGTAGTGTGAGCGAT 60.324 55.000 0.00 0.00 0.00 4.58
621 2464 0.487772 ACTGGAGTGGAGGGTAGTGT 59.512 55.000 0.00 0.00 0.00 3.55
860 2719 3.590824 CCGGGATGGTGAAACTGC 58.409 61.111 0.00 0.00 36.74 4.40
1053 2933 2.484062 GCTGTAGTACGGCGCCCTA 61.484 63.158 23.46 14.10 41.08 3.53
1263 3146 2.659610 GCCTCCGACAGCAGTTCT 59.340 61.111 0.00 0.00 0.00 3.01
1565 3472 2.297701 GGTGCTCCAAACTCTTGAACA 58.702 47.619 0.00 0.00 34.14 3.18
1575 3482 4.555709 ACCACGCGGTGCTCCAAA 62.556 61.111 12.47 0.00 46.79 3.28
1774 3711 1.761174 GGAGCCTGAAGTGGTCCAA 59.239 57.895 0.00 0.00 31.82 3.53
1792 3729 2.103143 AGATCAGCGCTCCGTTCG 59.897 61.111 7.13 0.00 0.00 3.95
1796 3733 0.312102 TACATCAGATCAGCGCTCCG 59.688 55.000 7.13 0.00 0.00 4.63
1804 3741 7.419057 GGGGTAAACTGAAGATACATCAGATCA 60.419 40.741 10.27 0.13 45.74 2.92
1807 3744 5.964477 AGGGGTAAACTGAAGATACATCAGA 59.036 40.000 10.27 0.00 45.74 3.27
1829 3766 3.635331 TCGACACTTAAACACGAGAAGG 58.365 45.455 0.00 0.00 0.00 3.46
1848 3785 2.432628 GAGGGCGTCCACAGTTCG 60.433 66.667 9.71 0.00 34.83 3.95
1876 3813 5.640158 AATCCATGATTGAATGCCCAATT 57.360 34.783 0.00 0.00 36.93 2.32
1877 3814 5.104277 ACAAATCCATGATTGAATGCCCAAT 60.104 36.000 11.28 0.00 39.27 3.16
1878 3815 4.225492 ACAAATCCATGATTGAATGCCCAA 59.775 37.500 11.28 0.00 32.14 4.12
1903 3840 6.486657 GGCTAGTAACCATTGATGAGCAAATA 59.513 38.462 0.00 0.00 40.48 1.40
1908 3845 3.808728 TGGCTAGTAACCATTGATGAGC 58.191 45.455 0.00 0.00 30.29 4.26
1966 3903 2.187946 CGCTCCCTTGCCACTAGG 59.812 66.667 0.00 0.00 38.23 3.02
1967 3904 2.512515 GCGCTCCCTTGCCACTAG 60.513 66.667 0.00 0.00 0.00 2.57
1968 3905 3.315142 CTGCGCTCCCTTGCCACTA 62.315 63.158 9.73 0.00 0.00 2.74
1969 3906 4.711949 CTGCGCTCCCTTGCCACT 62.712 66.667 9.73 0.00 0.00 4.00
1983 3920 4.687215 TGCTGGAGACGCCACTGC 62.687 66.667 0.00 0.00 43.33 4.40
1984 3921 2.031012 TTGCTGGAGACGCCACTG 59.969 61.111 0.00 0.00 43.33 3.66
1985 3922 2.031163 GTTGCTGGAGACGCCACT 59.969 61.111 0.00 0.00 43.33 4.00
1986 3923 3.050275 GGTTGCTGGAGACGCCAC 61.050 66.667 0.00 0.00 43.33 5.01
1987 3924 3.535629 CTGGTTGCTGGAGACGCCA 62.536 63.158 0.00 0.00 46.96 5.69
1988 3925 2.743928 CTGGTTGCTGGAGACGCC 60.744 66.667 0.00 0.00 37.10 5.68
1989 3926 2.743928 CCTGGTTGCTGGAGACGC 60.744 66.667 0.00 0.00 0.00 5.19
1990 3927 2.046892 CCCTGGTTGCTGGAGACG 60.047 66.667 0.00 0.00 0.00 4.18
1991 3928 0.606673 GAACCCTGGTTGCTGGAGAC 60.607 60.000 6.24 0.00 38.60 3.36
1992 3929 1.761174 GAACCCTGGTTGCTGGAGA 59.239 57.895 6.24 0.00 38.60 3.71
1993 3930 1.672356 CGAACCCTGGTTGCTGGAG 60.672 63.158 6.24 0.00 38.60 3.86
1994 3931 2.111999 CTCGAACCCTGGTTGCTGGA 62.112 60.000 6.24 0.00 38.60 3.86
1995 3932 1.672356 CTCGAACCCTGGTTGCTGG 60.672 63.158 6.24 0.00 38.60 4.85
1996 3933 2.328099 GCTCGAACCCTGGTTGCTG 61.328 63.158 6.24 0.00 38.60 4.41
1997 3934 2.032681 GCTCGAACCCTGGTTGCT 59.967 61.111 6.24 0.00 38.60 3.91
1998 3935 3.056328 GGCTCGAACCCTGGTTGC 61.056 66.667 6.24 3.86 38.60 4.17
1999 3936 1.002134 ATGGCTCGAACCCTGGTTG 60.002 57.895 6.24 0.00 38.60 3.77
2000 3937 1.002134 CATGGCTCGAACCCTGGTT 60.002 57.895 1.61 0.07 41.54 3.67
2001 3938 2.185310 GACATGGCTCGAACCCTGGT 62.185 60.000 13.69 4.30 30.24 4.00
2002 3939 1.450312 GACATGGCTCGAACCCTGG 60.450 63.158 13.69 1.26 30.24 4.45
2003 3940 1.811266 CGACATGGCTCGAACCCTG 60.811 63.158 8.41 8.41 35.58 4.45
2004 3941 2.579201 CGACATGGCTCGAACCCT 59.421 61.111 1.61 0.00 35.58 4.34
2005 3942 2.511600 CCGACATGGCTCGAACCC 60.512 66.667 1.61 0.00 35.58 4.11
2006 3943 2.511600 CCCGACATGGCTCGAACC 60.512 66.667 7.25 0.00 35.58 3.62
2007 3944 2.511600 CCCCGACATGGCTCGAAC 60.512 66.667 7.25 0.00 35.58 3.95
2008 3945 2.682136 TCCCCGACATGGCTCGAA 60.682 61.111 7.25 0.00 35.58 3.71
2009 3946 3.458163 GTCCCCGACATGGCTCGA 61.458 66.667 7.25 0.00 35.58 4.04
2010 3947 4.873129 CGTCCCCGACATGGCTCG 62.873 72.222 0.00 0.00 35.87 5.03
2011 3948 2.311688 ATTCGTCCCCGACATGGCTC 62.312 60.000 0.00 0.00 44.13 4.70
2012 3949 1.910580 AATTCGTCCCCGACATGGCT 61.911 55.000 0.00 0.00 44.13 4.75
2013 3950 1.029947 AAATTCGTCCCCGACATGGC 61.030 55.000 0.00 0.00 44.13 4.40
2014 3951 1.014352 GAAATTCGTCCCCGACATGG 58.986 55.000 0.00 0.00 44.13 3.66
2015 3952 1.665679 CAGAAATTCGTCCCCGACATG 59.334 52.381 0.00 0.00 44.13 3.21
2016 3953 1.406887 CCAGAAATTCGTCCCCGACAT 60.407 52.381 0.00 0.00 44.13 3.06
2017 3954 0.036765 CCAGAAATTCGTCCCCGACA 60.037 55.000 0.00 0.00 44.13 4.35
2018 3955 0.036671 ACCAGAAATTCGTCCCCGAC 60.037 55.000 0.00 0.00 44.13 4.79
2019 3956 0.688487 AACCAGAAATTCGTCCCCGA 59.312 50.000 0.00 0.00 42.41 5.14
2020 3957 1.467342 GAAACCAGAAATTCGTCCCCG 59.533 52.381 0.00 0.00 0.00 5.73
2021 3958 2.747989 GAGAAACCAGAAATTCGTCCCC 59.252 50.000 0.00 0.00 0.00 4.81
2022 3959 3.188667 GTGAGAAACCAGAAATTCGTCCC 59.811 47.826 0.00 0.00 0.00 4.46
2023 3960 3.813166 TGTGAGAAACCAGAAATTCGTCC 59.187 43.478 0.00 0.00 0.00 4.79
2024 3961 5.418310 TTGTGAGAAACCAGAAATTCGTC 57.582 39.130 0.00 0.00 0.00 4.20
2025 3962 4.275936 CCTTGTGAGAAACCAGAAATTCGT 59.724 41.667 0.00 0.00 0.00 3.85
2026 3963 4.320494 CCCTTGTGAGAAACCAGAAATTCG 60.320 45.833 0.00 0.00 0.00 3.34
2027 3964 4.827284 TCCCTTGTGAGAAACCAGAAATTC 59.173 41.667 0.00 0.00 0.00 2.17
2028 3965 4.803452 TCCCTTGTGAGAAACCAGAAATT 58.197 39.130 0.00 0.00 0.00 1.82
2029 3966 4.453480 TCCCTTGTGAGAAACCAGAAAT 57.547 40.909 0.00 0.00 0.00 2.17
2030 3967 3.943671 TCCCTTGTGAGAAACCAGAAA 57.056 42.857 0.00 0.00 0.00 2.52
2031 3968 3.754965 CATCCCTTGTGAGAAACCAGAA 58.245 45.455 0.00 0.00 0.00 3.02
2032 3969 2.553028 GCATCCCTTGTGAGAAACCAGA 60.553 50.000 0.00 0.00 0.00 3.86
2033 3970 1.815003 GCATCCCTTGTGAGAAACCAG 59.185 52.381 0.00 0.00 0.00 4.00
2034 3971 1.425066 AGCATCCCTTGTGAGAAACCA 59.575 47.619 0.00 0.00 0.00 3.67
2035 3972 2.206576 AGCATCCCTTGTGAGAAACC 57.793 50.000 0.00 0.00 0.00 3.27
2036 3973 3.416156 AGAAGCATCCCTTGTGAGAAAC 58.584 45.455 0.00 0.00 32.78 2.78
2037 3974 3.560025 GGAGAAGCATCCCTTGTGAGAAA 60.560 47.826 0.00 0.00 32.78 2.52
2038 3975 2.026822 GGAGAAGCATCCCTTGTGAGAA 60.027 50.000 0.00 0.00 32.78 2.87
2039 3976 1.556911 GGAGAAGCATCCCTTGTGAGA 59.443 52.381 0.00 0.00 32.78 3.27
2040 3977 1.558756 AGGAGAAGCATCCCTTGTGAG 59.441 52.381 0.00 0.00 40.53 3.51
2041 3978 1.661463 AGGAGAAGCATCCCTTGTGA 58.339 50.000 0.00 0.00 40.53 3.58
2042 3979 3.853355 ATAGGAGAAGCATCCCTTGTG 57.147 47.619 4.62 0.00 40.53 3.33
2043 3980 5.158141 TGATATAGGAGAAGCATCCCTTGT 58.842 41.667 4.62 0.00 40.53 3.16
2044 3981 5.752036 TGATATAGGAGAAGCATCCCTTG 57.248 43.478 4.62 0.00 40.53 3.61
2045 3982 6.966637 ATTGATATAGGAGAAGCATCCCTT 57.033 37.500 4.62 0.00 40.53 3.95
2046 3983 8.325046 GTTTATTGATATAGGAGAAGCATCCCT 58.675 37.037 4.70 4.70 40.53 4.20
2047 3984 7.554476 GGTTTATTGATATAGGAGAAGCATCCC 59.446 40.741 0.00 0.00 40.53 3.85
2048 3985 8.103305 TGGTTTATTGATATAGGAGAAGCATCC 58.897 37.037 0.00 0.00 39.89 3.51
2049 3986 9.678260 ATGGTTTATTGATATAGGAGAAGCATC 57.322 33.333 0.00 0.00 30.83 3.91
2065 4002 4.462483 ACACTAGCACCCAATGGTTTATTG 59.538 41.667 0.00 0.00 44.75 1.90
2066 4003 4.672899 ACACTAGCACCCAATGGTTTATT 58.327 39.130 0.00 0.00 44.75 1.40
2067 4004 4.270008 GACACTAGCACCCAATGGTTTAT 58.730 43.478 0.00 0.00 44.75 1.40
2068 4005 3.560453 GGACACTAGCACCCAATGGTTTA 60.560 47.826 0.00 0.00 44.75 2.01
2069 4006 2.514803 GACACTAGCACCCAATGGTTT 58.485 47.619 0.00 0.00 44.75 3.27
2070 4007 1.271926 GGACACTAGCACCCAATGGTT 60.272 52.381 0.00 0.00 44.75 3.67
2072 4009 0.327924 TGGACACTAGCACCCAATGG 59.672 55.000 0.00 0.00 37.80 3.16
2073 4010 2.019249 CATGGACACTAGCACCCAATG 58.981 52.381 2.29 0.00 31.77 2.82
2074 4011 1.915489 TCATGGACACTAGCACCCAAT 59.085 47.619 0.00 0.00 31.77 3.16
2075 4012 1.278985 CTCATGGACACTAGCACCCAA 59.721 52.381 0.00 0.00 31.77 4.12
2076 4013 0.904649 CTCATGGACACTAGCACCCA 59.095 55.000 0.00 0.00 0.00 4.51
2077 4014 0.905357 ACTCATGGACACTAGCACCC 59.095 55.000 0.00 0.00 0.00 4.61
2078 4015 2.770164 AACTCATGGACACTAGCACC 57.230 50.000 0.00 0.00 0.00 5.01
2079 4016 3.664107 TGAAACTCATGGACACTAGCAC 58.336 45.455 0.00 0.00 0.00 4.40
2080 4017 4.223700 AGATGAAACTCATGGACACTAGCA 59.776 41.667 0.00 0.00 37.20 3.49
2081 4018 4.764172 AGATGAAACTCATGGACACTAGC 58.236 43.478 0.00 0.00 37.20 3.42
2082 4019 7.678947 AAAAGATGAAACTCATGGACACTAG 57.321 36.000 0.00 0.00 37.20 2.57
2084 4021 6.966534 AAAAAGATGAAACTCATGGACACT 57.033 33.333 0.00 0.00 37.20 3.55
2168 4108 9.678941 GGGAAATCGATAAACTGAATATTTTCC 57.321 33.333 0.00 4.07 38.29 3.13
2174 4114 9.326413 GAAAGAGGGAAATCGATAAACTGAATA 57.674 33.333 0.00 0.00 0.00 1.75
2213 4154 3.512516 GCTTCCGATGGCCACAGC 61.513 66.667 8.16 7.31 38.76 4.40
2258 4199 2.436173 GGAGGTTTAGAGGGATGGTCAG 59.564 54.545 0.00 0.00 0.00 3.51
2288 4229 3.018856 TGTAGACTCGCCGGAGAAAATA 58.981 45.455 9.83 0.00 43.27 1.40
2305 4246 1.595357 GGTCGGTGAAGGGGTGTAG 59.405 63.158 0.00 0.00 0.00 2.74
2306 4247 1.914764 GGGTCGGTGAAGGGGTGTA 60.915 63.158 0.00 0.00 0.00 2.90
2307 4248 3.246880 GGGTCGGTGAAGGGGTGT 61.247 66.667 0.00 0.00 0.00 4.16
2316 4265 1.734117 GACGTTAACGGGGTCGGTG 60.734 63.158 29.81 1.53 44.95 4.94
2325 4274 2.159544 GGAGGAGAGTCAGACGTTAACG 60.160 54.545 25.68 25.68 46.33 3.18
2332 4281 1.316706 CCGGTGGAGGAGAGTCAGAC 61.317 65.000 0.00 0.00 0.00 3.51
2405 4354 4.029520 TGTAAATATGGGTTTGCATGGCT 58.970 39.130 0.00 0.00 30.42 4.75
2448 4397 9.883142 TGTGTTTTGATTTTTAGTGGATTTTCT 57.117 25.926 0.00 0.00 0.00 2.52
2527 4478 7.375053 ACTTAGCACAACTTTTTCTTTTGTCA 58.625 30.769 0.00 0.00 30.98 3.58
2564 4515 7.655328 CCAGCTCTCATCGAGAATTAACTAAAT 59.345 37.037 0.00 0.00 42.62 1.40
2589 4540 0.618458 TAGGTTCATGAGTGTGGGCC 59.382 55.000 0.00 0.00 0.00 5.80
2593 4544 7.490962 TTGTAAACTTAGGTTCATGAGTGTG 57.509 36.000 0.00 0.00 34.14 3.82
2594 4545 8.514330 TTTTGTAAACTTAGGTTCATGAGTGT 57.486 30.769 0.00 0.00 34.14 3.55
2617 4568 5.933463 TCATACCGTCAAACCTATCGTTTTT 59.067 36.000 0.00 0.00 42.15 1.94
2618 4569 5.481105 TCATACCGTCAAACCTATCGTTTT 58.519 37.500 0.00 0.00 42.15 2.43
2619 4570 5.075858 TCATACCGTCAAACCTATCGTTT 57.924 39.130 0.00 0.00 45.83 3.60
2620 4571 4.400251 TCTCATACCGTCAAACCTATCGTT 59.600 41.667 0.00 0.00 35.70 3.85
2621 4572 3.949754 TCTCATACCGTCAAACCTATCGT 59.050 43.478 0.00 0.00 0.00 3.73
2622 4573 4.563337 TCTCATACCGTCAAACCTATCG 57.437 45.455 0.00 0.00 0.00 2.92
2623 4574 6.978338 TGTATCTCATACCGTCAAACCTATC 58.022 40.000 0.00 0.00 34.86 2.08
2624 4575 6.971726 TGTATCTCATACCGTCAAACCTAT 57.028 37.500 0.00 0.00 34.86 2.57
2628 4579 7.919091 TCACTATTGTATCTCATACCGTCAAAC 59.081 37.037 0.00 0.00 34.86 2.93
2651 4602 6.092807 GTCTGGACTTGAAAGTGGATTATCAC 59.907 42.308 0.00 0.00 39.88 3.06
2686 4637 2.334653 TTTTTGCTTCAGCGCGGG 59.665 55.556 8.83 1.03 45.83 6.13
2748 4700 4.150627 CCCACGCATCAAATTATCTACGAG 59.849 45.833 0.00 0.00 0.00 4.18
2750 4702 4.055360 TCCCACGCATCAAATTATCTACG 58.945 43.478 0.00 0.00 0.00 3.51
2753 4705 2.880890 GCTCCCACGCATCAAATTATCT 59.119 45.455 0.00 0.00 0.00 1.98
2770 4722 8.552083 AATGATTTAAAAATTGGAACAGCTCC 57.448 30.769 0.00 0.00 45.64 4.70
2772 4724 9.558396 TCAAATGATTTAAAAATTGGAACAGCT 57.442 25.926 0.00 0.00 42.39 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.