Multiple sequence alignment - TraesCS4A01G385600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G385600 chr4A 100.000 3119 0 0 1 3119 662635268 662632150 0.000000e+00 5760
1 TraesCS4A01G385600 chr5B 99.304 2874 17 1 249 3119 570982176 570979303 0.000000e+00 5193
2 TraesCS4A01G385600 chr5B 98.573 2874 38 1 249 3119 588764379 588767252 0.000000e+00 5077
3 TraesCS4A01G385600 chr3B 99.304 2874 17 1 249 3119 56086036 56083163 0.000000e+00 5193
4 TraesCS4A01G385600 chr3A 99.304 2874 17 1 249 3119 158181517 158178644 0.000000e+00 5193
5 TraesCS4A01G385600 chr3A 98.817 2874 31 1 249 3119 468533957 468536830 0.000000e+00 5116
6 TraesCS4A01G385600 chr1A 99.235 2874 18 2 249 3119 39355526 39352654 0.000000e+00 5182
7 TraesCS4A01G385600 chr7A 99.095 2874 23 1 249 3119 292821128 292824001 0.000000e+00 5160
8 TraesCS4A01G385600 chr7A 81.448 221 31 8 30 248 50255553 50255341 4.140000e-39 172
9 TraesCS4A01G385600 chr5A 98.783 2876 30 2 249 3119 656865795 656868670 0.000000e+00 5112
10 TraesCS4A01G385600 chr6A 98.782 2874 32 1 249 3119 604114635 604111762 0.000000e+00 5110
11 TraesCS4A01G385600 chr7D 94.961 258 8 4 1 254 47645138 47645394 1.740000e-107 399
12 TraesCS4A01G385600 chrUn 94.758 248 12 1 1 247 49376109 49376356 4.880000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G385600 chr4A 662632150 662635268 3118 True 5760 5760 100.000 1 3119 1 chr4A.!!$R1 3118
1 TraesCS4A01G385600 chr5B 570979303 570982176 2873 True 5193 5193 99.304 249 3119 1 chr5B.!!$R1 2870
2 TraesCS4A01G385600 chr5B 588764379 588767252 2873 False 5077 5077 98.573 249 3119 1 chr5B.!!$F1 2870
3 TraesCS4A01G385600 chr3B 56083163 56086036 2873 True 5193 5193 99.304 249 3119 1 chr3B.!!$R1 2870
4 TraesCS4A01G385600 chr3A 158178644 158181517 2873 True 5193 5193 99.304 249 3119 1 chr3A.!!$R1 2870
5 TraesCS4A01G385600 chr3A 468533957 468536830 2873 False 5116 5116 98.817 249 3119 1 chr3A.!!$F1 2870
6 TraesCS4A01G385600 chr1A 39352654 39355526 2872 True 5182 5182 99.235 249 3119 1 chr1A.!!$R1 2870
7 TraesCS4A01G385600 chr7A 292821128 292824001 2873 False 5160 5160 99.095 249 3119 1 chr7A.!!$F1 2870
8 TraesCS4A01G385600 chr5A 656865795 656868670 2875 False 5112 5112 98.783 249 3119 1 chr5A.!!$F1 2870
9 TraesCS4A01G385600 chr6A 604111762 604114635 2873 True 5110 5110 98.782 249 3119 1 chr6A.!!$R1 2870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.033642 GGCTGGGCGAGGAGTTATAC 59.966 60.0 0.0 0.0 0.0 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2289 2.653115 CACTGACGCTCCAGCTCA 59.347 61.111 0.0 0.0 37.68 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.588348 ATTTTGCTTGTTTTCTGTACTTGC 57.412 33.333 0.00 0.00 0.00 4.01
26 27 4.981806 TTGCTTGTTTTCTGTACTTGCT 57.018 36.364 0.00 0.00 0.00 3.91
27 28 4.291540 TGCTTGTTTTCTGTACTTGCTG 57.708 40.909 0.00 0.00 0.00 4.41
28 29 3.045688 GCTTGTTTTCTGTACTTGCTGC 58.954 45.455 0.00 0.00 0.00 5.25
29 30 3.291585 CTTGTTTTCTGTACTTGCTGCG 58.708 45.455 0.00 0.00 0.00 5.18
30 31 2.556257 TGTTTTCTGTACTTGCTGCGA 58.444 42.857 0.00 0.00 0.00 5.10
31 32 2.939756 TGTTTTCTGTACTTGCTGCGAA 59.060 40.909 0.00 0.00 0.00 4.70
32 33 3.563808 TGTTTTCTGTACTTGCTGCGAAT 59.436 39.130 0.00 0.00 0.00 3.34
33 34 4.752604 TGTTTTCTGTACTTGCTGCGAATA 59.247 37.500 0.00 0.00 0.00 1.75
34 35 4.921470 TTTCTGTACTTGCTGCGAATAC 57.079 40.909 1.64 1.64 0.00 1.89
35 36 3.586100 TCTGTACTTGCTGCGAATACA 57.414 42.857 10.44 10.44 0.00 2.29
36 37 3.250744 TCTGTACTTGCTGCGAATACAC 58.749 45.455 7.08 0.00 0.00 2.90
37 38 1.989864 TGTACTTGCTGCGAATACACG 59.010 47.619 7.08 0.00 0.00 4.49
51 52 6.505039 CGAATACACGCAAATAGTATGTGA 57.495 37.500 4.36 0.00 34.72 3.58
52 53 7.105494 CGAATACACGCAAATAGTATGTGAT 57.895 36.000 4.36 0.00 34.72 3.06
53 54 7.220604 CGAATACACGCAAATAGTATGTGATC 58.779 38.462 4.36 0.00 34.72 2.92
54 55 7.096230 CGAATACACGCAAATAGTATGTGATCA 60.096 37.037 4.36 0.00 34.72 2.92
55 56 5.973651 ACACGCAAATAGTATGTGATCAG 57.026 39.130 4.36 0.00 34.72 2.90
56 57 5.660460 ACACGCAAATAGTATGTGATCAGA 58.340 37.500 4.36 0.00 34.72 3.27
57 58 6.283694 ACACGCAAATAGTATGTGATCAGAT 58.716 36.000 10.57 10.57 34.72 2.90
58 59 6.763135 ACACGCAAATAGTATGTGATCAGATT 59.237 34.615 11.04 0.00 34.72 2.40
59 60 7.926018 ACACGCAAATAGTATGTGATCAGATTA 59.074 33.333 11.04 0.00 34.72 1.75
60 61 8.929746 CACGCAAATAGTATGTGATCAGATTAT 58.070 33.333 11.04 1.17 32.39 1.28
61 62 8.929746 ACGCAAATAGTATGTGATCAGATTATG 58.070 33.333 11.04 3.45 32.71 1.90
62 63 8.929746 CGCAAATAGTATGTGATCAGATTATGT 58.070 33.333 11.04 0.00 0.00 2.29
69 70 9.973450 AGTATGTGATCAGATTATGTCAGTAAC 57.027 33.333 11.04 0.00 0.00 2.50
70 71 9.197694 GTATGTGATCAGATTATGTCAGTAACC 57.802 37.037 11.04 0.00 0.00 2.85
71 72 6.582636 TGTGATCAGATTATGTCAGTAACCC 58.417 40.000 0.00 0.00 0.00 4.11
72 73 6.156083 TGTGATCAGATTATGTCAGTAACCCA 59.844 38.462 0.00 0.00 0.00 4.51
73 74 6.703607 GTGATCAGATTATGTCAGTAACCCAG 59.296 42.308 0.00 0.00 0.00 4.45
74 75 6.611236 TGATCAGATTATGTCAGTAACCCAGA 59.389 38.462 0.00 0.00 0.00 3.86
75 76 6.867519 TCAGATTATGTCAGTAACCCAGAA 57.132 37.500 0.00 0.00 0.00 3.02
76 77 7.437713 TCAGATTATGTCAGTAACCCAGAAT 57.562 36.000 0.00 0.00 0.00 2.40
77 78 7.275183 TCAGATTATGTCAGTAACCCAGAATG 58.725 38.462 0.00 0.00 0.00 2.67
78 79 6.017605 CAGATTATGTCAGTAACCCAGAATGC 60.018 42.308 0.00 0.00 31.97 3.56
79 80 3.719268 ATGTCAGTAACCCAGAATGCA 57.281 42.857 0.00 0.00 31.97 3.96
80 81 3.719268 TGTCAGTAACCCAGAATGCAT 57.281 42.857 0.00 0.00 31.97 3.96
81 82 4.835284 TGTCAGTAACCCAGAATGCATA 57.165 40.909 0.00 0.00 31.97 3.14
82 83 5.372343 TGTCAGTAACCCAGAATGCATAT 57.628 39.130 0.00 0.00 31.97 1.78
83 84 6.493189 TGTCAGTAACCCAGAATGCATATA 57.507 37.500 0.00 0.00 31.97 0.86
84 85 6.894682 TGTCAGTAACCCAGAATGCATATAA 58.105 36.000 0.00 0.00 31.97 0.98
85 86 7.517320 TGTCAGTAACCCAGAATGCATATAAT 58.483 34.615 0.00 0.00 31.97 1.28
86 87 7.661437 TGTCAGTAACCCAGAATGCATATAATC 59.339 37.037 0.00 0.00 31.97 1.75
87 88 7.661437 GTCAGTAACCCAGAATGCATATAATCA 59.339 37.037 0.00 0.00 31.97 2.57
88 89 8.217111 TCAGTAACCCAGAATGCATATAATCAA 58.783 33.333 0.00 0.00 31.97 2.57
89 90 8.849168 CAGTAACCCAGAATGCATATAATCAAA 58.151 33.333 0.00 0.00 31.97 2.69
90 91 8.850156 AGTAACCCAGAATGCATATAATCAAAC 58.150 33.333 0.00 0.00 31.97 2.93
91 92 7.658525 AACCCAGAATGCATATAATCAAACA 57.341 32.000 0.00 0.00 31.97 2.83
92 93 7.042797 ACCCAGAATGCATATAATCAAACAC 57.957 36.000 0.00 0.00 31.97 3.32
93 94 6.835488 ACCCAGAATGCATATAATCAAACACT 59.165 34.615 0.00 0.00 31.97 3.55
94 95 7.013655 ACCCAGAATGCATATAATCAAACACTC 59.986 37.037 0.00 0.00 31.97 3.51
95 96 7.073883 CCAGAATGCATATAATCAAACACTCG 58.926 38.462 0.00 0.00 31.97 4.18
96 97 7.073883 CAGAATGCATATAATCAAACACTCGG 58.926 38.462 0.00 0.00 0.00 4.63
97 98 6.767902 AGAATGCATATAATCAAACACTCGGT 59.232 34.615 0.00 0.00 0.00 4.69
98 99 5.733226 TGCATATAATCAAACACTCGGTG 57.267 39.130 2.92 2.92 39.75 4.94
99 100 5.423886 TGCATATAATCAAACACTCGGTGA 58.576 37.500 10.46 0.00 36.96 4.02
100 101 5.877564 TGCATATAATCAAACACTCGGTGAA 59.122 36.000 10.46 0.00 36.96 3.18
101 102 6.372937 TGCATATAATCAAACACTCGGTGAAA 59.627 34.615 10.46 0.00 36.96 2.69
102 103 6.907212 GCATATAATCAAACACTCGGTGAAAG 59.093 38.462 10.46 1.21 36.96 2.62
103 104 7.414098 GCATATAATCAAACACTCGGTGAAAGT 60.414 37.037 10.46 0.00 36.96 2.66
104 105 6.877611 ATAATCAAACACTCGGTGAAAGTT 57.122 33.333 10.46 0.00 36.96 2.66
105 106 5.576447 AATCAAACACTCGGTGAAAGTTT 57.424 34.783 10.46 0.00 36.96 2.66
106 107 4.349663 TCAAACACTCGGTGAAAGTTTG 57.650 40.909 10.46 9.37 46.20 2.93
109 110 4.616181 AACACTCGGTGAAAGTTTGAAG 57.384 40.909 10.46 0.00 36.96 3.02
110 111 2.943033 ACACTCGGTGAAAGTTTGAAGG 59.057 45.455 10.46 0.00 36.96 3.46
111 112 1.947456 ACTCGGTGAAAGTTTGAAGGC 59.053 47.619 0.00 0.00 0.00 4.35
112 113 1.266989 CTCGGTGAAAGTTTGAAGGCC 59.733 52.381 0.00 0.00 0.00 5.19
113 114 1.133915 TCGGTGAAAGTTTGAAGGCCT 60.134 47.619 0.00 0.00 0.00 5.19
114 115 1.001378 CGGTGAAAGTTTGAAGGCCTG 60.001 52.381 5.69 0.00 0.00 4.85
115 116 2.306847 GGTGAAAGTTTGAAGGCCTGA 58.693 47.619 5.69 0.00 0.00 3.86
116 117 2.693074 GGTGAAAGTTTGAAGGCCTGAA 59.307 45.455 5.69 0.00 0.00 3.02
117 118 3.490933 GGTGAAAGTTTGAAGGCCTGAAC 60.491 47.826 5.69 12.42 0.00 3.18
118 119 3.381590 GTGAAAGTTTGAAGGCCTGAACT 59.618 43.478 18.68 18.68 34.03 3.01
119 120 4.023291 TGAAAGTTTGAAGGCCTGAACTT 58.977 39.130 25.17 25.17 42.36 2.66
120 121 4.097892 TGAAAGTTTGAAGGCCTGAACTTC 59.902 41.667 28.29 23.06 40.38 3.01
121 122 2.222027 AGTTTGAAGGCCTGAACTTCG 58.778 47.619 18.68 0.00 45.59 3.79
122 123 2.158813 AGTTTGAAGGCCTGAACTTCGA 60.159 45.455 18.68 5.58 45.59 3.71
123 124 1.878953 TTGAAGGCCTGAACTTCGAC 58.121 50.000 5.69 0.00 45.59 4.20
124 125 1.048601 TGAAGGCCTGAACTTCGACT 58.951 50.000 5.69 0.00 45.59 4.18
125 126 2.244695 TGAAGGCCTGAACTTCGACTA 58.755 47.619 5.69 0.00 45.59 2.59
126 127 2.029290 TGAAGGCCTGAACTTCGACTAC 60.029 50.000 5.69 0.00 45.59 2.73
127 128 1.629043 AGGCCTGAACTTCGACTACA 58.371 50.000 3.11 0.00 0.00 2.74
128 129 1.546476 AGGCCTGAACTTCGACTACAG 59.454 52.381 3.11 0.00 0.00 2.74
135 136 6.137794 CTGAACTTCGACTACAGGATATGT 57.862 41.667 0.00 0.00 46.45 2.29
136 137 6.525578 TGAACTTCGACTACAGGATATGTT 57.474 37.500 0.00 0.00 39.96 2.71
137 138 6.931838 TGAACTTCGACTACAGGATATGTTT 58.068 36.000 0.00 0.00 39.96 2.83
138 139 7.383687 TGAACTTCGACTACAGGATATGTTTT 58.616 34.615 0.00 0.00 39.96 2.43
139 140 8.525316 TGAACTTCGACTACAGGATATGTTTTA 58.475 33.333 0.00 0.00 39.96 1.52
140 141 9.530633 GAACTTCGACTACAGGATATGTTTTAT 57.469 33.333 0.00 0.00 39.96 1.40
141 142 9.886132 AACTTCGACTACAGGATATGTTTTATT 57.114 29.630 0.00 0.00 39.96 1.40
142 143 9.886132 ACTTCGACTACAGGATATGTTTTATTT 57.114 29.630 0.00 0.00 39.96 1.40
151 152 9.832445 ACAGGATATGTTTTATTTAGATGTCGT 57.168 29.630 0.00 0.00 39.96 4.34
159 160 8.227791 TGTTTTATTTAGATGTCGTCAGAAAGC 58.772 33.333 0.00 0.00 0.00 3.51
160 161 7.899178 TTTATTTAGATGTCGTCAGAAAGCA 57.101 32.000 0.00 0.00 0.00 3.91
161 162 5.786401 ATTTAGATGTCGTCAGAAAGCAC 57.214 39.130 0.00 0.00 0.00 4.40
162 163 4.521130 TTAGATGTCGTCAGAAAGCACT 57.479 40.909 0.00 0.00 0.00 4.40
163 164 2.681706 AGATGTCGTCAGAAAGCACTG 58.318 47.619 0.00 0.00 39.02 3.66
164 165 1.728971 GATGTCGTCAGAAAGCACTGG 59.271 52.381 0.00 0.00 38.31 4.00
165 166 0.750249 TGTCGTCAGAAAGCACTGGA 59.250 50.000 0.00 0.00 38.31 3.86
166 167 1.140816 GTCGTCAGAAAGCACTGGAC 58.859 55.000 0.00 0.00 38.31 4.02
167 168 0.750249 TCGTCAGAAAGCACTGGACA 59.250 50.000 0.00 0.00 38.31 4.02
168 169 1.138069 TCGTCAGAAAGCACTGGACAA 59.862 47.619 0.00 0.00 38.31 3.18
169 170 1.528586 CGTCAGAAAGCACTGGACAAG 59.471 52.381 0.00 0.00 38.31 3.16
170 171 1.265365 GTCAGAAAGCACTGGACAAGC 59.735 52.381 0.00 0.00 38.31 4.01
171 172 0.595095 CAGAAAGCACTGGACAAGCC 59.405 55.000 0.00 0.00 34.64 4.35
172 173 0.183492 AGAAAGCACTGGACAAGCCA 59.817 50.000 0.00 0.00 46.96 4.75
180 181 2.951269 TGGACAAGCCATCAAGCAG 58.049 52.632 0.00 0.00 43.33 4.24
181 182 0.609957 TGGACAAGCCATCAAGCAGG 60.610 55.000 0.00 0.00 43.33 4.85
187 188 3.145551 CCATCAAGCAGGCTGGGC 61.146 66.667 17.64 2.06 0.00 5.36
188 189 3.515286 CATCAAGCAGGCTGGGCG 61.515 66.667 17.64 0.00 36.08 6.13
189 190 3.720601 ATCAAGCAGGCTGGGCGA 61.721 61.111 17.64 0.00 36.08 5.54
190 191 3.694058 ATCAAGCAGGCTGGGCGAG 62.694 63.158 17.64 1.10 36.08 5.03
195 196 3.710722 CAGGCTGGGCGAGGAGTT 61.711 66.667 6.61 0.00 0.00 3.01
196 197 2.038975 AGGCTGGGCGAGGAGTTA 59.961 61.111 0.00 0.00 0.00 2.24
197 198 1.383248 AGGCTGGGCGAGGAGTTAT 60.383 57.895 0.00 0.00 0.00 1.89
198 199 0.105658 AGGCTGGGCGAGGAGTTATA 60.106 55.000 0.00 0.00 0.00 0.98
199 200 0.033642 GGCTGGGCGAGGAGTTATAC 59.966 60.000 0.00 0.00 0.00 1.47
200 201 1.041437 GCTGGGCGAGGAGTTATACT 58.959 55.000 0.00 0.00 0.00 2.12
201 202 1.413077 GCTGGGCGAGGAGTTATACTT 59.587 52.381 0.00 0.00 0.00 2.24
202 203 2.158943 GCTGGGCGAGGAGTTATACTTT 60.159 50.000 0.00 0.00 0.00 2.66
203 204 3.458189 CTGGGCGAGGAGTTATACTTTG 58.542 50.000 0.00 0.00 0.00 2.77
204 205 3.101437 TGGGCGAGGAGTTATACTTTGA 58.899 45.455 0.00 0.00 0.00 2.69
205 206 3.118884 TGGGCGAGGAGTTATACTTTGAC 60.119 47.826 0.00 0.00 0.00 3.18
206 207 3.114065 GGCGAGGAGTTATACTTTGACG 58.886 50.000 0.00 0.00 0.00 4.35
207 208 3.114065 GCGAGGAGTTATACTTTGACGG 58.886 50.000 0.00 0.00 0.00 4.79
208 209 3.703420 CGAGGAGTTATACTTTGACGGG 58.297 50.000 0.00 0.00 0.00 5.28
209 210 3.490419 CGAGGAGTTATACTTTGACGGGG 60.490 52.174 0.00 0.00 0.00 5.73
210 211 3.703052 GAGGAGTTATACTTTGACGGGGA 59.297 47.826 0.00 0.00 0.00 4.81
211 212 4.098894 AGGAGTTATACTTTGACGGGGAA 58.901 43.478 0.00 0.00 0.00 3.97
212 213 4.533311 AGGAGTTATACTTTGACGGGGAAA 59.467 41.667 0.00 0.00 0.00 3.13
213 214 4.633126 GGAGTTATACTTTGACGGGGAAAC 59.367 45.833 0.00 0.00 0.00 2.78
214 215 5.231702 AGTTATACTTTGACGGGGAAACA 57.768 39.130 0.00 0.00 0.00 2.83
215 216 5.812286 AGTTATACTTTGACGGGGAAACAT 58.188 37.500 0.00 0.00 0.00 2.71
216 217 5.878669 AGTTATACTTTGACGGGGAAACATC 59.121 40.000 0.00 0.00 0.00 3.06
217 218 2.649531 ACTTTGACGGGGAAACATCA 57.350 45.000 0.00 0.00 0.00 3.07
218 219 3.154827 ACTTTGACGGGGAAACATCAT 57.845 42.857 0.00 0.00 0.00 2.45
219 220 2.819608 ACTTTGACGGGGAAACATCATG 59.180 45.455 0.00 0.00 0.00 3.07
220 221 1.173043 TTGACGGGGAAACATCATGC 58.827 50.000 0.00 0.00 0.00 4.06
221 222 0.327924 TGACGGGGAAACATCATGCT 59.672 50.000 0.00 0.00 0.00 3.79
222 223 0.734889 GACGGGGAAACATCATGCTG 59.265 55.000 0.00 0.00 0.00 4.41
223 224 0.327924 ACGGGGAAACATCATGCTGA 59.672 50.000 3.02 0.00 0.00 4.26
224 225 1.271871 ACGGGGAAACATCATGCTGAA 60.272 47.619 3.02 0.00 0.00 3.02
225 226 1.402968 CGGGGAAACATCATGCTGAAG 59.597 52.381 3.02 0.00 0.00 3.02
226 227 2.726821 GGGGAAACATCATGCTGAAGA 58.273 47.619 3.02 0.00 0.00 2.87
227 228 3.294214 GGGGAAACATCATGCTGAAGAT 58.706 45.455 3.02 0.00 0.00 2.40
228 229 3.067742 GGGGAAACATCATGCTGAAGATG 59.932 47.826 3.02 0.00 45.44 2.90
229 230 3.067742 GGGAAACATCATGCTGAAGATGG 59.932 47.826 3.02 0.00 44.50 3.51
230 231 3.698040 GGAAACATCATGCTGAAGATGGT 59.302 43.478 3.02 0.00 43.64 3.55
231 232 4.883585 GGAAACATCATGCTGAAGATGGTA 59.116 41.667 3.02 0.00 41.08 3.25
232 233 5.008415 GGAAACATCATGCTGAAGATGGTAG 59.992 44.000 3.02 0.00 41.08 3.18
233 234 4.082665 ACATCATGCTGAAGATGGTAGG 57.917 45.455 3.02 0.00 44.50 3.18
234 235 3.181447 ACATCATGCTGAAGATGGTAGGG 60.181 47.826 3.02 0.00 44.50 3.53
235 236 2.763039 TCATGCTGAAGATGGTAGGGA 58.237 47.619 0.00 0.00 0.00 4.20
236 237 2.702478 TCATGCTGAAGATGGTAGGGAG 59.298 50.000 0.00 0.00 0.00 4.30
237 238 0.833287 TGCTGAAGATGGTAGGGAGC 59.167 55.000 0.00 0.00 0.00 4.70
238 239 0.833287 GCTGAAGATGGTAGGGAGCA 59.167 55.000 0.00 0.00 37.51 4.26
239 240 1.202627 GCTGAAGATGGTAGGGAGCAG 60.203 57.143 0.00 0.00 36.28 4.24
240 241 1.415659 CTGAAGATGGTAGGGAGCAGG 59.584 57.143 0.00 0.00 36.28 4.85
241 242 0.107643 GAAGATGGTAGGGAGCAGGC 59.892 60.000 0.00 0.00 36.28 4.85
242 243 0.621571 AAGATGGTAGGGAGCAGGCA 60.622 55.000 0.00 0.00 36.28 4.75
243 244 1.147153 GATGGTAGGGAGCAGGCAC 59.853 63.158 0.00 0.00 36.28 5.01
244 245 2.330924 GATGGTAGGGAGCAGGCACC 62.331 65.000 0.00 0.00 36.28 5.01
245 246 3.009115 GGTAGGGAGCAGGCACCA 61.009 66.667 9.90 0.00 0.00 4.17
246 247 2.602676 GGTAGGGAGCAGGCACCAA 61.603 63.158 9.90 0.00 0.00 3.67
247 248 1.609783 GTAGGGAGCAGGCACCAAT 59.390 57.895 9.90 0.66 0.00 3.16
515 516 0.252012 CCTATCCTCTCCTCCCGCAT 60.252 60.000 0.00 0.00 0.00 4.73
537 538 1.050204 TTGAGCAGCCAGGCAAAAAT 58.950 45.000 15.80 0.00 35.83 1.82
2117 2123 3.827505 GGCCAGCCCTGAAATCATA 57.172 52.632 0.00 0.00 0.00 2.15
2118 2124 2.071778 GGCCAGCCCTGAAATCATAA 57.928 50.000 0.00 0.00 0.00 1.90
2615 2621 1.822114 TTCCTGGTGATGCCGTTCGA 61.822 55.000 0.00 0.00 41.21 3.71
2676 2682 3.833645 CTGCTGCGGCCGTACCTA 61.834 66.667 28.70 8.07 37.74 3.08
2692 2698 1.202557 ACCTACGCCGTTTTGTTCTCA 60.203 47.619 0.00 0.00 0.00 3.27
2756 2762 1.144716 ATCTCCGACATGTGCGCAT 59.855 52.632 15.91 7.01 35.32 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.435192 AGCAAGTACAGAAAACAAGCAAAATAC 59.565 33.333 0.00 0.00 0.00 1.89
1 2 7.434897 CAGCAAGTACAGAAAACAAGCAAAATA 59.565 33.333 0.00 0.00 0.00 1.40
2 3 6.256321 CAGCAAGTACAGAAAACAAGCAAAAT 59.744 34.615 0.00 0.00 0.00 1.82
3 4 5.576384 CAGCAAGTACAGAAAACAAGCAAAA 59.424 36.000 0.00 0.00 0.00 2.44
4 5 5.101628 CAGCAAGTACAGAAAACAAGCAAA 58.898 37.500 0.00 0.00 0.00 3.68
5 6 4.671377 CAGCAAGTACAGAAAACAAGCAA 58.329 39.130 0.00 0.00 0.00 3.91
6 7 3.489059 GCAGCAAGTACAGAAAACAAGCA 60.489 43.478 0.00 0.00 0.00 3.91
7 8 3.045688 GCAGCAAGTACAGAAAACAAGC 58.954 45.455 0.00 0.00 0.00 4.01
8 9 3.002246 TCGCAGCAAGTACAGAAAACAAG 59.998 43.478 0.00 0.00 0.00 3.16
9 10 2.939756 TCGCAGCAAGTACAGAAAACAA 59.060 40.909 0.00 0.00 0.00 2.83
10 11 2.556257 TCGCAGCAAGTACAGAAAACA 58.444 42.857 0.00 0.00 0.00 2.83
11 12 3.602390 TTCGCAGCAAGTACAGAAAAC 57.398 42.857 0.00 0.00 0.00 2.43
12 13 4.752604 TGTATTCGCAGCAAGTACAGAAAA 59.247 37.500 0.00 0.00 0.00 2.29
13 14 4.151689 GTGTATTCGCAGCAAGTACAGAAA 59.848 41.667 0.00 0.00 0.00 2.52
14 15 3.678072 GTGTATTCGCAGCAAGTACAGAA 59.322 43.478 0.00 0.00 0.00 3.02
15 16 3.250744 GTGTATTCGCAGCAAGTACAGA 58.749 45.455 0.00 0.00 0.00 3.41
16 17 2.028045 CGTGTATTCGCAGCAAGTACAG 59.972 50.000 0.00 0.00 0.00 2.74
17 18 1.989864 CGTGTATTCGCAGCAAGTACA 59.010 47.619 0.00 0.00 0.00 2.90
18 19 2.696076 CGTGTATTCGCAGCAAGTAC 57.304 50.000 0.00 0.00 0.00 2.73
28 29 6.505039 TCACATACTATTTGCGTGTATTCG 57.495 37.500 0.00 0.00 0.00 3.34
29 30 8.072238 TGATCACATACTATTTGCGTGTATTC 57.928 34.615 0.00 0.00 0.00 1.75
30 31 7.926018 TCTGATCACATACTATTTGCGTGTATT 59.074 33.333 0.00 0.00 0.00 1.89
31 32 7.433680 TCTGATCACATACTATTTGCGTGTAT 58.566 34.615 0.00 0.00 0.00 2.29
32 33 6.801575 TCTGATCACATACTATTTGCGTGTA 58.198 36.000 0.00 0.00 0.00 2.90
33 34 5.660460 TCTGATCACATACTATTTGCGTGT 58.340 37.500 0.00 0.00 0.00 4.49
34 35 6.775939 ATCTGATCACATACTATTTGCGTG 57.224 37.500 0.00 0.00 0.00 5.34
35 36 8.929746 CATAATCTGATCACATACTATTTGCGT 58.070 33.333 0.00 0.00 0.00 5.24
36 37 8.929746 ACATAATCTGATCACATACTATTTGCG 58.070 33.333 0.00 0.00 0.00 4.85
43 44 9.973450 GTTACTGACATAATCTGATCACATACT 57.027 33.333 0.00 0.00 0.00 2.12
44 45 9.197694 GGTTACTGACATAATCTGATCACATAC 57.802 37.037 0.00 0.00 0.00 2.39
45 46 8.367911 GGGTTACTGACATAATCTGATCACATA 58.632 37.037 0.00 0.00 0.00 2.29
46 47 7.147497 TGGGTTACTGACATAATCTGATCACAT 60.147 37.037 0.00 0.00 0.00 3.21
47 48 6.156083 TGGGTTACTGACATAATCTGATCACA 59.844 38.462 0.00 0.00 0.00 3.58
48 49 6.582636 TGGGTTACTGACATAATCTGATCAC 58.417 40.000 0.00 0.00 0.00 3.06
49 50 6.611236 TCTGGGTTACTGACATAATCTGATCA 59.389 38.462 0.00 0.00 0.00 2.92
50 51 7.055667 TCTGGGTTACTGACATAATCTGATC 57.944 40.000 0.00 0.00 0.00 2.92
51 52 7.437713 TTCTGGGTTACTGACATAATCTGAT 57.562 36.000 0.00 0.00 0.00 2.90
52 53 6.867519 TTCTGGGTTACTGACATAATCTGA 57.132 37.500 0.00 0.00 0.00 3.27
53 54 6.017605 GCATTCTGGGTTACTGACATAATCTG 60.018 42.308 0.00 0.00 0.00 2.90
54 55 6.058183 GCATTCTGGGTTACTGACATAATCT 58.942 40.000 0.00 0.00 0.00 2.40
55 56 5.822519 TGCATTCTGGGTTACTGACATAATC 59.177 40.000 0.00 0.00 0.00 1.75
56 57 5.754782 TGCATTCTGGGTTACTGACATAAT 58.245 37.500 0.00 0.00 0.00 1.28
57 58 5.172687 TGCATTCTGGGTTACTGACATAA 57.827 39.130 0.00 0.00 0.00 1.90
58 59 4.835284 TGCATTCTGGGTTACTGACATA 57.165 40.909 0.00 0.00 0.00 2.29
59 60 3.719268 TGCATTCTGGGTTACTGACAT 57.281 42.857 0.00 0.00 0.00 3.06
60 61 3.719268 ATGCATTCTGGGTTACTGACA 57.281 42.857 0.00 0.00 0.00 3.58
61 62 7.661437 TGATTATATGCATTCTGGGTTACTGAC 59.339 37.037 3.54 0.00 0.00 3.51
62 63 7.744733 TGATTATATGCATTCTGGGTTACTGA 58.255 34.615 3.54 0.00 0.00 3.41
63 64 7.984422 TGATTATATGCATTCTGGGTTACTG 57.016 36.000 3.54 0.00 0.00 2.74
64 65 8.850156 GTTTGATTATATGCATTCTGGGTTACT 58.150 33.333 3.54 0.00 0.00 2.24
65 66 8.629158 TGTTTGATTATATGCATTCTGGGTTAC 58.371 33.333 3.54 0.00 0.00 2.50
66 67 8.629158 GTGTTTGATTATATGCATTCTGGGTTA 58.371 33.333 3.54 0.00 0.00 2.85
67 68 7.342799 AGTGTTTGATTATATGCATTCTGGGTT 59.657 33.333 3.54 0.00 0.00 4.11
68 69 6.835488 AGTGTTTGATTATATGCATTCTGGGT 59.165 34.615 3.54 0.00 0.00 4.51
69 70 7.281040 AGTGTTTGATTATATGCATTCTGGG 57.719 36.000 3.54 0.00 0.00 4.45
70 71 7.073883 CGAGTGTTTGATTATATGCATTCTGG 58.926 38.462 3.54 0.00 0.00 3.86
71 72 7.073883 CCGAGTGTTTGATTATATGCATTCTG 58.926 38.462 3.54 0.00 0.00 3.02
72 73 6.767902 ACCGAGTGTTTGATTATATGCATTCT 59.232 34.615 3.54 0.00 0.00 2.40
73 74 6.852853 CACCGAGTGTTTGATTATATGCATTC 59.147 38.462 3.54 0.00 0.00 2.67
74 75 6.542005 TCACCGAGTGTTTGATTATATGCATT 59.458 34.615 3.54 0.00 34.79 3.56
75 76 6.054941 TCACCGAGTGTTTGATTATATGCAT 58.945 36.000 3.79 3.79 34.79 3.96
76 77 5.423886 TCACCGAGTGTTTGATTATATGCA 58.576 37.500 0.00 0.00 34.79 3.96
77 78 5.984233 TCACCGAGTGTTTGATTATATGC 57.016 39.130 4.33 0.00 34.79 3.14
78 79 7.974675 ACTTTCACCGAGTGTTTGATTATATG 58.025 34.615 4.33 0.00 34.79 1.78
79 80 8.561738 AACTTTCACCGAGTGTTTGATTATAT 57.438 30.769 4.33 0.00 34.79 0.86
80 81 7.972832 AACTTTCACCGAGTGTTTGATTATA 57.027 32.000 4.33 0.00 34.79 0.98
81 82 6.877611 AACTTTCACCGAGTGTTTGATTAT 57.122 33.333 4.33 0.00 34.79 1.28
82 83 6.316640 TCAAACTTTCACCGAGTGTTTGATTA 59.683 34.615 13.33 0.00 46.12 1.75
83 84 5.124776 TCAAACTTTCACCGAGTGTTTGATT 59.875 36.000 13.33 1.81 46.12 2.57
84 85 4.638421 TCAAACTTTCACCGAGTGTTTGAT 59.362 37.500 13.33 0.00 46.12 2.57
85 86 4.349663 CAAACTTTCACCGAGTGTTTGA 57.650 40.909 10.25 0.00 45.75 2.69
86 87 4.349663 TCAAACTTTCACCGAGTGTTTG 57.650 40.909 9.69 9.69 44.86 2.93
87 88 4.142469 CCTTCAAACTTTCACCGAGTGTTT 60.142 41.667 4.33 0.00 34.79 2.83
88 89 3.377172 CCTTCAAACTTTCACCGAGTGTT 59.623 43.478 4.33 0.00 34.79 3.32
89 90 2.943033 CCTTCAAACTTTCACCGAGTGT 59.057 45.455 4.33 0.00 34.79 3.55
90 91 2.287009 GCCTTCAAACTTTCACCGAGTG 60.287 50.000 0.00 0.00 34.45 3.51
91 92 1.947456 GCCTTCAAACTTTCACCGAGT 59.053 47.619 0.00 0.00 0.00 4.18
92 93 1.266989 GGCCTTCAAACTTTCACCGAG 59.733 52.381 0.00 0.00 0.00 4.63
93 94 1.133915 AGGCCTTCAAACTTTCACCGA 60.134 47.619 0.00 0.00 0.00 4.69
94 95 1.001378 CAGGCCTTCAAACTTTCACCG 60.001 52.381 0.00 0.00 0.00 4.94
95 96 2.306847 TCAGGCCTTCAAACTTTCACC 58.693 47.619 0.00 0.00 0.00 4.02
96 97 3.381590 AGTTCAGGCCTTCAAACTTTCAC 59.618 43.478 15.91 0.00 0.00 3.18
97 98 3.631250 AGTTCAGGCCTTCAAACTTTCA 58.369 40.909 15.91 0.00 0.00 2.69
98 99 4.611943 GAAGTTCAGGCCTTCAAACTTTC 58.388 43.478 26.65 19.32 40.89 2.62
99 100 3.066760 CGAAGTTCAGGCCTTCAAACTTT 59.933 43.478 26.65 16.58 40.89 2.66
100 101 2.618709 CGAAGTTCAGGCCTTCAAACTT 59.381 45.455 26.43 26.43 42.86 2.66
101 102 2.158813 TCGAAGTTCAGGCCTTCAAACT 60.159 45.455 15.91 15.91 38.57 2.66
102 103 2.031944 GTCGAAGTTCAGGCCTTCAAAC 60.032 50.000 0.00 8.52 38.57 2.93
103 104 2.158813 AGTCGAAGTTCAGGCCTTCAAA 60.159 45.455 0.00 0.00 38.57 2.69
104 105 1.416401 AGTCGAAGTTCAGGCCTTCAA 59.584 47.619 0.00 0.00 38.57 2.69
105 106 1.048601 AGTCGAAGTTCAGGCCTTCA 58.951 50.000 0.00 0.00 38.57 3.02
106 107 2.029290 TGTAGTCGAAGTTCAGGCCTTC 60.029 50.000 0.00 0.00 35.94 3.46
107 108 1.968493 TGTAGTCGAAGTTCAGGCCTT 59.032 47.619 0.00 0.00 0.00 4.35
108 109 1.546476 CTGTAGTCGAAGTTCAGGCCT 59.454 52.381 0.00 0.00 0.00 5.19
109 110 1.404315 CCTGTAGTCGAAGTTCAGGCC 60.404 57.143 12.06 0.00 39.02 5.19
110 111 1.544691 TCCTGTAGTCGAAGTTCAGGC 59.455 52.381 16.97 0.00 43.49 4.85
111 112 5.067936 ACATATCCTGTAGTCGAAGTTCAGG 59.932 44.000 16.15 16.15 44.69 3.86
112 113 6.137794 ACATATCCTGTAGTCGAAGTTCAG 57.862 41.667 3.32 0.00 35.91 3.02
113 114 6.525578 AACATATCCTGTAGTCGAAGTTCA 57.474 37.500 3.32 0.00 36.98 3.18
114 115 7.829378 AAAACATATCCTGTAGTCGAAGTTC 57.171 36.000 0.00 0.00 36.98 3.01
115 116 9.886132 AATAAAACATATCCTGTAGTCGAAGTT 57.114 29.630 0.00 0.00 36.98 2.66
116 117 9.886132 AAATAAAACATATCCTGTAGTCGAAGT 57.114 29.630 0.00 0.00 36.98 3.01
125 126 9.832445 ACGACATCTAAATAAAACATATCCTGT 57.168 29.630 0.00 0.00 40.84 4.00
133 134 8.227791 GCTTTCTGACGACATCTAAATAAAACA 58.772 33.333 0.00 0.00 0.00 2.83
134 135 8.227791 TGCTTTCTGACGACATCTAAATAAAAC 58.772 33.333 0.00 0.00 0.00 2.43
135 136 8.227791 GTGCTTTCTGACGACATCTAAATAAAA 58.772 33.333 0.00 0.00 0.00 1.52
136 137 7.602644 AGTGCTTTCTGACGACATCTAAATAAA 59.397 33.333 0.00 0.00 0.00 1.40
137 138 7.063426 CAGTGCTTTCTGACGACATCTAAATAA 59.937 37.037 0.00 0.00 37.61 1.40
138 139 6.531594 CAGTGCTTTCTGACGACATCTAAATA 59.468 38.462 0.00 0.00 37.61 1.40
139 140 5.349817 CAGTGCTTTCTGACGACATCTAAAT 59.650 40.000 0.00 0.00 37.61 1.40
140 141 4.686091 CAGTGCTTTCTGACGACATCTAAA 59.314 41.667 0.00 0.00 37.61 1.85
141 142 4.237724 CAGTGCTTTCTGACGACATCTAA 58.762 43.478 0.00 0.00 37.61 2.10
142 143 3.367395 CCAGTGCTTTCTGACGACATCTA 60.367 47.826 0.00 0.00 37.61 1.98
143 144 2.611473 CCAGTGCTTTCTGACGACATCT 60.611 50.000 0.00 0.00 37.61 2.90
144 145 1.728971 CCAGTGCTTTCTGACGACATC 59.271 52.381 0.00 0.00 37.61 3.06
145 146 1.344438 TCCAGTGCTTTCTGACGACAT 59.656 47.619 0.00 0.00 37.61 3.06
146 147 0.750249 TCCAGTGCTTTCTGACGACA 59.250 50.000 0.00 0.00 37.61 4.35
147 148 1.140816 GTCCAGTGCTTTCTGACGAC 58.859 55.000 0.00 0.00 37.61 4.34
148 149 0.750249 TGTCCAGTGCTTTCTGACGA 59.250 50.000 0.00 0.00 37.61 4.20
149 150 1.528586 CTTGTCCAGTGCTTTCTGACG 59.471 52.381 5.88 0.00 37.61 4.35
150 151 1.265365 GCTTGTCCAGTGCTTTCTGAC 59.735 52.381 5.88 0.00 37.61 3.51
151 152 1.597742 GCTTGTCCAGTGCTTTCTGA 58.402 50.000 5.88 0.00 37.61 3.27
152 153 0.595095 GGCTTGTCCAGTGCTTTCTG 59.405 55.000 0.00 0.00 35.45 3.02
153 154 0.183492 TGGCTTGTCCAGTGCTTTCT 59.817 50.000 0.00 0.00 40.72 2.52
154 155 2.719376 TGGCTTGTCCAGTGCTTTC 58.281 52.632 0.00 0.00 40.72 2.62
163 164 1.941999 GCCTGCTTGATGGCTTGTCC 61.942 60.000 0.00 0.00 45.26 4.02
164 165 1.509923 GCCTGCTTGATGGCTTGTC 59.490 57.895 0.00 0.00 45.26 3.18
165 166 3.690745 GCCTGCTTGATGGCTTGT 58.309 55.556 0.00 0.00 45.26 3.16
170 171 3.145551 GCCCAGCCTGCTTGATGG 61.146 66.667 3.68 3.68 0.00 3.51
171 172 3.515286 CGCCCAGCCTGCTTGATG 61.515 66.667 0.00 0.00 0.00 3.07
172 173 3.694058 CTCGCCCAGCCTGCTTGAT 62.694 63.158 0.00 0.00 0.00 2.57
173 174 4.399395 CTCGCCCAGCCTGCTTGA 62.399 66.667 0.00 0.00 0.00 3.02
178 179 1.690219 ATAACTCCTCGCCCAGCCTG 61.690 60.000 0.00 0.00 0.00 4.85
179 180 0.105658 TATAACTCCTCGCCCAGCCT 60.106 55.000 0.00 0.00 0.00 4.58
180 181 0.033642 GTATAACTCCTCGCCCAGCC 59.966 60.000 0.00 0.00 0.00 4.85
181 182 1.041437 AGTATAACTCCTCGCCCAGC 58.959 55.000 0.00 0.00 0.00 4.85
182 183 3.132289 TCAAAGTATAACTCCTCGCCCAG 59.868 47.826 0.00 0.00 0.00 4.45
183 184 3.101437 TCAAAGTATAACTCCTCGCCCA 58.899 45.455 0.00 0.00 0.00 5.36
184 185 3.455327 GTCAAAGTATAACTCCTCGCCC 58.545 50.000 0.00 0.00 0.00 6.13
185 186 3.114065 CGTCAAAGTATAACTCCTCGCC 58.886 50.000 0.00 0.00 0.00 5.54
186 187 3.114065 CCGTCAAAGTATAACTCCTCGC 58.886 50.000 0.00 0.00 0.00 5.03
187 188 3.490419 CCCCGTCAAAGTATAACTCCTCG 60.490 52.174 0.00 0.00 0.00 4.63
188 189 3.703052 TCCCCGTCAAAGTATAACTCCTC 59.297 47.826 0.00 0.00 0.00 3.71
189 190 3.716431 TCCCCGTCAAAGTATAACTCCT 58.284 45.455 0.00 0.00 0.00 3.69
190 191 4.476628 TTCCCCGTCAAAGTATAACTCC 57.523 45.455 0.00 0.00 0.00 3.85
191 192 5.240121 TGTTTCCCCGTCAAAGTATAACTC 58.760 41.667 0.00 0.00 0.00 3.01
192 193 5.231702 TGTTTCCCCGTCAAAGTATAACT 57.768 39.130 0.00 0.00 0.00 2.24
193 194 5.644636 TGATGTTTCCCCGTCAAAGTATAAC 59.355 40.000 0.00 0.00 0.00 1.89
194 195 5.806818 TGATGTTTCCCCGTCAAAGTATAA 58.193 37.500 0.00 0.00 0.00 0.98
195 196 5.423704 TGATGTTTCCCCGTCAAAGTATA 57.576 39.130 0.00 0.00 0.00 1.47
196 197 4.295141 TGATGTTTCCCCGTCAAAGTAT 57.705 40.909 0.00 0.00 0.00 2.12
197 198 3.773418 TGATGTTTCCCCGTCAAAGTA 57.227 42.857 0.00 0.00 0.00 2.24
198 199 2.649531 TGATGTTTCCCCGTCAAAGT 57.350 45.000 0.00 0.00 0.00 2.66
199 200 2.415893 GCATGATGTTTCCCCGTCAAAG 60.416 50.000 0.00 0.00 34.24 2.77
200 201 1.543802 GCATGATGTTTCCCCGTCAAA 59.456 47.619 0.00 0.00 34.24 2.69
201 202 1.173043 GCATGATGTTTCCCCGTCAA 58.827 50.000 0.00 0.00 34.24 3.18
202 203 0.327924 AGCATGATGTTTCCCCGTCA 59.672 50.000 0.00 0.00 34.99 4.35
203 204 0.734889 CAGCATGATGTTTCCCCGTC 59.265 55.000 1.88 0.00 39.69 4.79
204 205 0.327924 TCAGCATGATGTTTCCCCGT 59.672 50.000 11.32 0.00 42.56 5.28
205 206 3.173540 TCAGCATGATGTTTCCCCG 57.826 52.632 11.32 0.00 42.56 5.73
216 217 2.809665 GCTCCCTACCATCTTCAGCATG 60.810 54.545 0.00 0.00 37.54 4.06
217 218 1.419387 GCTCCCTACCATCTTCAGCAT 59.581 52.381 0.00 0.00 0.00 3.79
218 219 0.833287 GCTCCCTACCATCTTCAGCA 59.167 55.000 0.00 0.00 0.00 4.41
219 220 0.833287 TGCTCCCTACCATCTTCAGC 59.167 55.000 0.00 0.00 0.00 4.26
220 221 1.415659 CCTGCTCCCTACCATCTTCAG 59.584 57.143 0.00 0.00 0.00 3.02
221 222 1.500474 CCTGCTCCCTACCATCTTCA 58.500 55.000 0.00 0.00 0.00 3.02
222 223 0.107643 GCCTGCTCCCTACCATCTTC 59.892 60.000 0.00 0.00 0.00 2.87
223 224 0.621571 TGCCTGCTCCCTACCATCTT 60.622 55.000 0.00 0.00 0.00 2.40
224 225 1.003442 TGCCTGCTCCCTACCATCT 59.997 57.895 0.00 0.00 0.00 2.90
225 226 1.147153 GTGCCTGCTCCCTACCATC 59.853 63.158 0.00 0.00 0.00 3.51
226 227 2.378634 GGTGCCTGCTCCCTACCAT 61.379 63.158 0.00 0.00 0.00 3.55
227 228 3.009115 GGTGCCTGCTCCCTACCA 61.009 66.667 0.00 0.00 0.00 3.25
228 229 1.926426 ATTGGTGCCTGCTCCCTACC 61.926 60.000 7.69 0.00 0.00 3.18
229 230 0.034089 AATTGGTGCCTGCTCCCTAC 60.034 55.000 7.69 0.00 0.00 3.18
230 231 0.034186 CAATTGGTGCCTGCTCCCTA 60.034 55.000 7.69 0.00 0.00 3.53
231 232 1.304713 CAATTGGTGCCTGCTCCCT 60.305 57.895 7.69 0.00 0.00 4.20
232 233 1.598701 GACAATTGGTGCCTGCTCCC 61.599 60.000 10.83 0.21 0.00 4.30
233 234 0.895100 TGACAATTGGTGCCTGCTCC 60.895 55.000 10.83 3.32 0.00 4.70
234 235 1.135199 CATGACAATTGGTGCCTGCTC 60.135 52.381 10.83 0.00 0.00 4.26
235 236 0.892755 CATGACAATTGGTGCCTGCT 59.107 50.000 10.83 0.00 0.00 4.24
236 237 0.604578 ACATGACAATTGGTGCCTGC 59.395 50.000 10.83 0.00 0.00 4.85
237 238 1.067425 CCACATGACAATTGGTGCCTG 60.067 52.381 10.83 4.93 0.00 4.85
238 239 1.259609 CCACATGACAATTGGTGCCT 58.740 50.000 10.83 0.00 0.00 4.75
239 240 0.247185 CCCACATGACAATTGGTGCC 59.753 55.000 10.83 0.00 0.00 5.01
240 241 0.247185 CCCCACATGACAATTGGTGC 59.753 55.000 10.83 0.00 0.00 5.01
241 242 0.247185 GCCCCACATGACAATTGGTG 59.753 55.000 10.83 7.89 0.00 4.17
242 243 0.178938 TGCCCCACATGACAATTGGT 60.179 50.000 10.83 0.00 0.00 3.67
243 244 0.247185 GTGCCCCACATGACAATTGG 59.753 55.000 10.83 0.00 34.08 3.16
244 245 0.109179 CGTGCCCCACATGACAATTG 60.109 55.000 3.24 3.24 37.49 2.32
245 246 0.539438 ACGTGCCCCACATGACAATT 60.539 50.000 0.00 0.00 38.75 2.32
246 247 0.960364 GACGTGCCCCACATGACAAT 60.960 55.000 0.00 0.00 38.75 2.71
247 248 1.599518 GACGTGCCCCACATGACAA 60.600 57.895 0.00 0.00 38.75 3.18
515 516 0.540133 TTTGCCTGGCTGCTCAATGA 60.540 50.000 21.03 0.00 0.00 2.57
537 538 0.539901 GGTGGATAGGAGCGCTAGGA 60.540 60.000 11.50 0.00 0.00 2.94
2283 2289 2.653115 CACTGACGCTCCAGCTCA 59.347 61.111 0.00 0.00 37.68 4.26
2676 2682 1.878953 AGATGAGAACAAAACGGCGT 58.121 45.000 6.77 6.77 0.00 5.68
2692 2698 4.808414 TGAGGATGTCGTCAAAGAAGAT 57.192 40.909 3.15 0.00 37.75 2.40
2756 2762 2.197605 TGCAGGACGGTGAAGACGA 61.198 57.895 0.00 0.00 34.93 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.