Multiple sequence alignment - TraesCS4A01G383100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G383100 chr4A 100.000 2667 0 0 1 2667 660987027 660984361 0.000000e+00 4926.0
1 TraesCS4A01G383100 chr4A 81.674 1195 203 14 1008 2195 661050667 661049482 0.000000e+00 979.0
2 TraesCS4A01G383100 chr4A 82.555 814 134 5 1003 1811 661122292 661121482 0.000000e+00 710.0
3 TraesCS4A01G383100 chr4A 87.500 320 38 2 1877 2195 661121390 661121072 5.010000e-98 368.0
4 TraesCS4A01G383100 chr4A 87.500 320 38 2 1877 2195 661143264 661142946 5.010000e-98 368.0
5 TraesCS4A01G383100 chr4A 100.000 163 0 0 3019 3181 660984009 660983847 5.160000e-78 302.0
6 TraesCS4A01G383100 chr4A 84.643 280 42 1 1532 1811 661143634 661143356 8.690000e-71 278.0
7 TraesCS4A01G383100 chr7D 93.342 1607 82 7 878 2460 46906510 46904905 0.000000e+00 2351.0
8 TraesCS4A01G383100 chr7D 81.811 1248 188 21 1003 2214 46944493 46943249 0.000000e+00 1011.0
9 TraesCS4A01G383100 chr7D 89.039 739 46 14 35 769 46907222 46906515 0.000000e+00 883.0
10 TraesCS4A01G383100 chr7D 94.231 156 9 0 3023 3178 528784053 528784208 4.100000e-59 239.0
11 TraesCS4A01G383100 chr7D 93.711 159 10 0 3022 3180 548329928 548330086 4.100000e-59 239.0
12 TraesCS4A01G383100 chr7D 87.624 202 20 4 2468 2667 22680030 22679832 2.470000e-56 230.0
13 TraesCS4A01G383100 chr7D 84.834 211 26 6 2457 2667 376699322 376699526 1.160000e-49 207.0
14 TraesCS4A01G383100 chr7D 93.750 48 2 1 831 878 381795440 381795486 1.580000e-08 71.3
15 TraesCS4A01G383100 chr7A 92.606 1623 81 20 875 2466 49132527 49130913 0.000000e+00 2296.0
16 TraesCS4A01G383100 chr7A 81.925 1195 200 14 1008 2195 49179701 49178516 0.000000e+00 996.0
17 TraesCS4A01G383100 chr7A 87.838 740 58 16 35 769 49133241 49132529 0.000000e+00 839.0
18 TraesCS4A01G383100 chr7A 97.368 38 1 0 567 604 49179904 49179867 7.370000e-07 65.8
19 TraesCS4A01G383100 chr5D 94.904 157 8 0 3022 3178 216822812 216822656 2.450000e-61 246.0
20 TraesCS4A01G383100 chr5D 93.631 157 9 1 3022 3178 482214109 482213954 1.910000e-57 233.0
21 TraesCS4A01G383100 chr5D 91.176 68 6 0 809 876 434870224 434870157 3.380000e-15 93.5
22 TraesCS4A01G383100 chr5D 80.556 108 10 6 770 876 285300601 285300504 4.400000e-09 73.1
23 TraesCS4A01G383100 chr4B 94.904 157 8 0 3022 3178 647617839 647617995 2.450000e-61 246.0
24 TraesCS4A01G383100 chr4B 94.904 157 8 0 3022 3178 647618650 647618806 2.450000e-61 246.0
25 TraesCS4A01G383100 chr3A 94.904 157 8 0 3022 3178 539360718 539360874 2.450000e-61 246.0
26 TraesCS4A01G383100 chr3A 88.068 176 15 6 2458 2631 670880309 670880138 1.500000e-48 204.0
27 TraesCS4A01G383100 chr7B 94.194 155 8 1 3022 3176 68722607 68722760 5.300000e-58 235.0
28 TraesCS4A01G383100 chr7B 84.112 107 8 7 769 875 47460166 47460263 9.390000e-16 95.3
29 TraesCS4A01G383100 chr1D 93.631 157 10 0 3022 3178 437807563 437807407 5.300000e-58 235.0
30 TraesCS4A01G383100 chr1D 87.931 174 20 1 2460 2632 136957028 136957201 1.500000e-48 204.0
31 TraesCS4A01G383100 chr2D 91.176 170 15 0 2463 2632 131076562 131076731 6.860000e-57 231.0
32 TraesCS4A01G383100 chr2D 90.000 70 6 1 809 878 609152044 609151976 4.370000e-14 89.8
33 TraesCS4A01G383100 chr2D 86.765 68 9 0 809 876 182811216 182811149 3.400000e-10 76.8
34 TraesCS4A01G383100 chr3D 84.762 210 26 4 2459 2667 267264621 267264417 4.160000e-49 206.0
35 TraesCS4A01G383100 chr3D 100.000 29 0 0 358 386 604659866 604659894 2.000000e-03 54.7
36 TraesCS4A01G383100 chr1A 87.791 172 19 2 2459 2629 11976329 11976159 1.940000e-47 200.0
37 TraesCS4A01G383100 chr1A 83.732 209 25 6 2464 2667 430579032 430578828 4.190000e-44 189.0
38 TraesCS4A01G383100 chr3B 86.885 183 16 8 2457 2632 780351983 780351802 6.960000e-47 198.0
39 TraesCS4A01G383100 chr3B 97.619 42 1 0 769 810 579799454 579799413 4.400000e-09 73.1
40 TraesCS4A01G383100 chr5B 83.929 112 8 2 770 881 341902872 341902973 7.260000e-17 99.0
41 TraesCS4A01G383100 chr5B 91.176 68 6 0 809 876 678603121 678603188 3.380000e-15 93.5
42 TraesCS4A01G383100 chr6D 88.235 68 8 0 809 876 395840897 395840830 7.310000e-12 82.4
43 TraesCS4A01G383100 chr6B 87.500 72 8 1 806 876 85722790 85722719 7.310000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G383100 chr4A 660983847 660987027 3180 True 2614.0 4926 100.0000 1 3181 2 chr4A.!!$R2 3180
1 TraesCS4A01G383100 chr4A 661049482 661050667 1185 True 979.0 979 81.6740 1008 2195 1 chr4A.!!$R1 1187
2 TraesCS4A01G383100 chr4A 661121072 661122292 1220 True 539.0 710 85.0275 1003 2195 2 chr4A.!!$R3 1192
3 TraesCS4A01G383100 chr4A 661142946 661143634 688 True 323.0 368 86.0715 1532 2195 2 chr4A.!!$R4 663
4 TraesCS4A01G383100 chr7D 46904905 46907222 2317 True 1617.0 2351 91.1905 35 2460 2 chr7D.!!$R3 2425
5 TraesCS4A01G383100 chr7D 46943249 46944493 1244 True 1011.0 1011 81.8110 1003 2214 1 chr7D.!!$R2 1211
6 TraesCS4A01G383100 chr7A 49130913 49133241 2328 True 1567.5 2296 90.2220 35 2466 2 chr7A.!!$R1 2431
7 TraesCS4A01G383100 chr7A 49178516 49179904 1388 True 530.9 996 89.6465 567 2195 2 chr7A.!!$R2 1628
8 TraesCS4A01G383100 chr4B 647617839 647618806 967 False 246.0 246 94.9040 3022 3178 2 chr4B.!!$F1 156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 788 0.106619 AGTGCTACCTACTCCCTCCG 60.107 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 2705 0.036858 GCTGGACTTGTCTCTGGTCC 60.037 60.0 0.0 0.0 46.8 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.462530 AATGCGTAAAAAGGGTTTTAGCT 57.537 34.783 0.00 0.00 39.34 3.32
23 24 4.492791 TGCGTAAAAAGGGTTTTAGCTC 57.507 40.909 0.00 0.00 39.34 4.09
24 25 3.884091 TGCGTAAAAAGGGTTTTAGCTCA 59.116 39.130 0.00 0.00 39.34 4.26
25 26 4.338682 TGCGTAAAAAGGGTTTTAGCTCAA 59.661 37.500 0.00 0.00 39.34 3.02
26 27 5.010213 TGCGTAAAAAGGGTTTTAGCTCAAT 59.990 36.000 0.00 0.00 39.34 2.57
27 28 5.571741 GCGTAAAAAGGGTTTTAGCTCAATC 59.428 40.000 0.00 0.00 39.34 2.67
28 29 6.090783 CGTAAAAAGGGTTTTAGCTCAATCC 58.909 40.000 0.00 0.00 39.34 3.01
29 30 6.294286 CGTAAAAAGGGTTTTAGCTCAATCCA 60.294 38.462 9.93 0.00 39.34 3.41
30 31 6.493189 AAAAAGGGTTTTAGCTCAATCCAA 57.507 33.333 9.93 0.00 35.12 3.53
31 32 5.728637 AAAGGGTTTTAGCTCAATCCAAG 57.271 39.130 9.93 0.00 0.00 3.61
32 33 4.657814 AGGGTTTTAGCTCAATCCAAGA 57.342 40.909 9.93 0.00 0.00 3.02
33 34 5.198602 AGGGTTTTAGCTCAATCCAAGAT 57.801 39.130 9.93 0.00 0.00 2.40
91 92 1.395954 CGTGAGTGGCTCATCAACATG 59.604 52.381 1.99 0.00 42.73 3.21
94 95 3.693085 GTGAGTGGCTCATCAACATGATT 59.307 43.478 0.00 0.00 42.73 2.57
158 163 1.074405 AGTGCATTGGACACTGACCAT 59.926 47.619 11.08 0.00 46.38 3.55
178 183 1.649390 TTGTTGCGTGCGTTCCTTGT 61.649 50.000 0.00 0.00 0.00 3.16
280 285 3.187022 CGACAGATGTGAGCAAATGAACA 59.813 43.478 0.00 0.00 0.00 3.18
284 289 7.218228 ACAGATGTGAGCAAATGAACATTAA 57.782 32.000 0.00 0.00 33.51 1.40
301 306 2.799126 TAAATGGGCCATTGTCTCGT 57.201 45.000 31.31 17.24 34.04 4.18
303 308 2.799126 AATGGGCCATTGTCTCGTAA 57.201 45.000 30.24 0.00 32.39 3.18
304 309 2.332063 ATGGGCCATTGTCTCGTAAG 57.668 50.000 14.78 0.00 0.00 2.34
310 315 9.692075 AATGGGCCATTGTCTCGTAAGATGTTA 62.692 40.741 30.24 0.00 38.08 2.41
319 324 4.371855 TCGTAAGATGTTAGCTGGTCTG 57.628 45.455 0.00 0.00 45.01 3.51
334 339 5.366186 AGCTGGTCTGAGAATCTTGATGTAT 59.634 40.000 0.00 0.00 34.92 2.29
388 393 6.541111 ACTTTCGGTGAACTTTGATAAGTC 57.459 37.500 0.00 0.00 43.74 3.01
389 394 6.289064 ACTTTCGGTGAACTTTGATAAGTCT 58.711 36.000 0.00 0.00 43.74 3.24
420 428 8.001881 AGTCAGCGACTATTAATATGGATAGG 57.998 38.462 9.06 0.00 41.51 2.57
421 429 7.834681 AGTCAGCGACTATTAATATGGATAGGA 59.165 37.037 9.06 0.00 41.51 2.94
422 430 8.132362 GTCAGCGACTATTAATATGGATAGGAG 58.868 40.741 0.00 5.20 31.59 3.69
423 431 7.285629 TCAGCGACTATTAATATGGATAGGAGG 59.714 40.741 0.00 2.06 31.59 4.30
424 432 6.551601 AGCGACTATTAATATGGATAGGAGGG 59.448 42.308 0.00 0.00 31.59 4.30
425 433 6.550108 GCGACTATTAATATGGATAGGAGGGA 59.450 42.308 0.00 0.00 31.59 4.20
426 434 7.233757 GCGACTATTAATATGGATAGGAGGGAT 59.766 40.741 0.00 0.00 31.59 3.85
427 435 9.148879 CGACTATTAATATGGATAGGAGGGATT 57.851 37.037 0.00 0.00 31.59 3.01
506 514 1.270971 GCTGCAAACTTGTGTGTGTG 58.729 50.000 0.00 0.00 34.00 3.82
507 515 1.912001 CTGCAAACTTGTGTGTGTGG 58.088 50.000 0.00 0.00 34.00 4.17
509 517 2.098614 TGCAAACTTGTGTGTGTGGAT 58.901 42.857 0.00 0.00 34.00 3.41
510 518 2.159268 TGCAAACTTGTGTGTGTGGATG 60.159 45.455 0.00 0.00 34.00 3.51
511 519 2.159254 GCAAACTTGTGTGTGTGGATGT 60.159 45.455 0.00 0.00 34.00 3.06
512 520 3.437428 CAAACTTGTGTGTGTGGATGTG 58.563 45.455 0.00 0.00 0.00 3.21
513 521 1.679139 ACTTGTGTGTGTGGATGTGG 58.321 50.000 0.00 0.00 0.00 4.17
517 525 0.586319 GTGTGTGTGGATGTGGTTCG 59.414 55.000 0.00 0.00 0.00 3.95
544 552 3.842602 CGTGTGCGTGTAGGAGTG 58.157 61.111 0.00 0.00 0.00 3.51
545 553 2.372690 CGTGTGCGTGTAGGAGTGC 61.373 63.158 0.00 0.00 0.00 4.40
546 554 1.300620 GTGTGCGTGTAGGAGTGCA 60.301 57.895 0.00 0.00 34.44 4.57
547 555 0.670546 GTGTGCGTGTAGGAGTGCAT 60.671 55.000 0.00 0.00 39.85 3.96
548 556 0.892063 TGTGCGTGTAGGAGTGCATA 59.108 50.000 0.00 0.00 39.85 3.14
549 557 1.480545 TGTGCGTGTAGGAGTGCATAT 59.519 47.619 0.00 0.00 39.85 1.78
550 558 2.093711 TGTGCGTGTAGGAGTGCATATT 60.094 45.455 0.00 0.00 39.85 1.28
669 678 2.707039 GCGTGCCGCGTGATTTAT 59.293 55.556 4.92 0.00 44.55 1.40
701 710 1.339631 CCTTTGCCTCCACGGTTATCA 60.340 52.381 0.00 0.00 34.25 2.15
753 762 1.039785 AGCTGAGCTACCGATGCTGA 61.040 55.000 4.49 0.00 41.30 4.26
769 778 2.243810 GCTGATAGGCTAGTGCTACCT 58.756 52.381 0.00 0.00 39.59 3.08
770 779 3.181433 TGCTGATAGGCTAGTGCTACCTA 60.181 47.826 14.25 0.00 40.26 3.08
771 780 3.191791 GCTGATAGGCTAGTGCTACCTAC 59.808 52.174 0.00 0.00 38.83 3.18
772 781 4.658063 CTGATAGGCTAGTGCTACCTACT 58.342 47.826 0.00 0.00 38.83 2.57
773 782 4.653868 TGATAGGCTAGTGCTACCTACTC 58.346 47.826 0.00 0.00 38.83 2.59
774 783 2.368311 AGGCTAGTGCTACCTACTCC 57.632 55.000 0.00 0.00 39.59 3.85
775 784 1.133419 AGGCTAGTGCTACCTACTCCC 60.133 57.143 0.00 0.00 39.59 4.30
776 785 1.133419 GGCTAGTGCTACCTACTCCCT 60.133 57.143 0.00 0.00 39.59 4.20
777 786 2.232399 GCTAGTGCTACCTACTCCCTC 58.768 57.143 0.00 0.00 36.03 4.30
778 787 2.866351 CTAGTGCTACCTACTCCCTCC 58.134 57.143 0.00 0.00 0.00 4.30
779 788 0.106619 AGTGCTACCTACTCCCTCCG 60.107 60.000 0.00 0.00 0.00 4.63
780 789 0.395448 GTGCTACCTACTCCCTCCGT 60.395 60.000 0.00 0.00 0.00 4.69
781 790 0.333993 TGCTACCTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
782 791 1.031235 GCTACCTACTCCCTCCGTTC 58.969 60.000 0.00 0.00 0.00 3.95
783 792 1.409942 GCTACCTACTCCCTCCGTTCT 60.410 57.143 0.00 0.00 0.00 3.01
784 793 2.158696 GCTACCTACTCCCTCCGTTCTA 60.159 54.545 0.00 0.00 0.00 2.10
785 794 3.686691 GCTACCTACTCCCTCCGTTCTAA 60.687 52.174 0.00 0.00 0.00 2.10
786 795 3.463048 ACCTACTCCCTCCGTTCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
787 796 3.782992 ACCTACTCCCTCCGTTCTAAAA 58.217 45.455 0.00 0.00 0.00 1.52
788 797 4.162651 ACCTACTCCCTCCGTTCTAAAAA 58.837 43.478 0.00 0.00 0.00 1.94
810 819 7.745620 AAAAGATGACCCAACTTTGTACTAG 57.254 36.000 3.56 0.00 36.76 2.57
811 820 6.681729 AAGATGACCCAACTTTGTACTAGA 57.318 37.500 0.00 0.00 0.00 2.43
812 821 6.875972 AGATGACCCAACTTTGTACTAGAT 57.124 37.500 0.00 0.00 0.00 1.98
813 822 6.644347 AGATGACCCAACTTTGTACTAGATG 58.356 40.000 0.00 0.00 0.00 2.90
814 823 6.440647 AGATGACCCAACTTTGTACTAGATGA 59.559 38.462 0.00 0.00 0.00 2.92
815 824 5.790593 TGACCCAACTTTGTACTAGATGAC 58.209 41.667 0.00 0.00 0.00 3.06
816 825 5.161943 ACCCAACTTTGTACTAGATGACC 57.838 43.478 0.00 0.00 0.00 4.02
817 826 4.019591 ACCCAACTTTGTACTAGATGACCC 60.020 45.833 0.00 0.00 0.00 4.46
818 827 4.019681 CCCAACTTTGTACTAGATGACCCA 60.020 45.833 0.00 0.00 0.00 4.51
819 828 5.514136 CCCAACTTTGTACTAGATGACCCAA 60.514 44.000 0.00 0.00 0.00 4.12
820 829 5.411669 CCAACTTTGTACTAGATGACCCAAC 59.588 44.000 0.00 0.00 0.00 3.77
821 830 6.231211 CAACTTTGTACTAGATGACCCAACT 58.769 40.000 0.00 0.00 0.00 3.16
822 831 6.435292 ACTTTGTACTAGATGACCCAACTT 57.565 37.500 0.00 0.00 0.00 2.66
823 832 6.838382 ACTTTGTACTAGATGACCCAACTTT 58.162 36.000 0.00 0.00 0.00 2.66
824 833 6.710744 ACTTTGTACTAGATGACCCAACTTTG 59.289 38.462 0.00 0.00 0.00 2.77
825 834 5.818678 TGTACTAGATGACCCAACTTTGT 57.181 39.130 0.00 0.00 0.00 2.83
826 835 6.921486 TGTACTAGATGACCCAACTTTGTA 57.079 37.500 0.00 0.00 0.00 2.41
827 836 7.490657 TGTACTAGATGACCCAACTTTGTAT 57.509 36.000 0.00 0.00 0.00 2.29
828 837 7.913789 TGTACTAGATGACCCAACTTTGTATT 58.086 34.615 0.00 0.00 0.00 1.89
829 838 9.038072 TGTACTAGATGACCCAACTTTGTATTA 57.962 33.333 0.00 0.00 0.00 0.98
861 870 8.932791 AGTACAAAGTTACGTCATCTATTTTGG 58.067 33.333 0.00 0.00 0.00 3.28
862 871 7.972832 ACAAAGTTACGTCATCTATTTTGGA 57.027 32.000 0.00 0.00 0.00 3.53
863 872 8.385898 ACAAAGTTACGTCATCTATTTTGGAA 57.614 30.769 0.00 0.00 0.00 3.53
864 873 8.287503 ACAAAGTTACGTCATCTATTTTGGAAC 58.712 33.333 0.00 0.00 0.00 3.62
865 874 8.504005 CAAAGTTACGTCATCTATTTTGGAACT 58.496 33.333 0.00 0.00 0.00 3.01
866 875 7.596749 AGTTACGTCATCTATTTTGGAACTG 57.403 36.000 0.00 0.00 0.00 3.16
867 876 7.383687 AGTTACGTCATCTATTTTGGAACTGA 58.616 34.615 0.00 0.00 0.00 3.41
868 877 7.545965 AGTTACGTCATCTATTTTGGAACTGAG 59.454 37.037 0.00 0.00 0.00 3.35
869 878 5.178797 ACGTCATCTATTTTGGAACTGAGG 58.821 41.667 0.00 0.00 0.00 3.86
870 879 4.572389 CGTCATCTATTTTGGAACTGAGGG 59.428 45.833 0.00 0.00 0.00 4.30
871 880 5.626809 CGTCATCTATTTTGGAACTGAGGGA 60.627 44.000 0.00 0.00 0.00 4.20
872 881 5.819901 GTCATCTATTTTGGAACTGAGGGAG 59.180 44.000 0.00 0.00 0.00 4.30
873 882 5.488919 TCATCTATTTTGGAACTGAGGGAGT 59.511 40.000 0.00 0.00 35.94 3.85
967 979 9.121658 TCGTCATAGAAGTATAGAACTGAACAT 57.878 33.333 0.00 0.00 38.88 2.71
995 1007 3.161866 GGAGAGTGACCAGAAAGAGAGT 58.838 50.000 0.00 0.00 0.00 3.24
998 1010 5.249780 AGAGTGACCAGAAAGAGAGTAGA 57.750 43.478 0.00 0.00 0.00 2.59
999 1011 5.253330 AGAGTGACCAGAAAGAGAGTAGAG 58.747 45.833 0.00 0.00 0.00 2.43
1029 1050 2.011122 CCATAGAGGTACCCACGGAT 57.989 55.000 8.74 0.32 0.00 4.18
1134 1155 0.824109 TCGAGATTCCGACTGCCATT 59.176 50.000 0.00 0.00 33.14 3.16
1215 1236 3.541632 GGTTAAGATGCCATTTCTCCGA 58.458 45.455 0.00 0.00 0.00 4.55
1236 1257 3.777925 GTCATGCGCGTGCTCGTT 61.778 61.111 24.82 1.37 43.34 3.85
1242 1263 2.797850 CGCGTGCTCGTTACGTCA 60.798 61.111 10.18 1.48 43.09 4.35
1288 1312 0.820074 CGGGTCTGAGGCGATCTACT 60.820 60.000 0.00 0.00 0.00 2.57
1362 1386 4.759693 CACCACAGCCAGAAGTATTTTGTA 59.240 41.667 0.00 0.00 0.00 2.41
1365 1389 5.122396 CCACAGCCAGAAGTATTTTGTACTC 59.878 44.000 0.00 0.00 0.00 2.59
1443 1467 2.125106 GACCATGAGCCACCGGTC 60.125 66.667 2.59 0.00 41.08 4.79
1466 1490 2.704572 GTCACCCTTTGAGGACATCTG 58.295 52.381 0.00 0.00 37.67 2.90
2100 2171 4.161001 GGGATGAAAATGACTGGAGCAAAT 59.839 41.667 0.00 0.00 0.00 2.32
2246 2317 5.951747 ACCATAAATGTAAGTTGCATGGACT 59.048 36.000 15.60 0.00 35.95 3.85
2277 2350 1.839424 AAGTGCCCAGCTTAATCCAC 58.161 50.000 0.00 0.00 0.00 4.02
2317 2390 4.806640 ATGTTGGCTTTGGGAAGTAATG 57.193 40.909 0.00 0.00 35.25 1.90
2340 2413 2.983402 CACTTGGTGTGCATCTTCTG 57.017 50.000 0.00 0.00 40.06 3.02
2445 2518 5.963892 GCTTTTGCCGAGTACTGGACTCA 62.964 52.174 19.55 0.00 45.98 3.41
2469 2542 3.598693 AAGGTACCCTTTCCCGAAAAA 57.401 42.857 8.74 0.00 41.69 1.94
2470 2543 3.150458 AGGTACCCTTTCCCGAAAAAG 57.850 47.619 8.74 3.34 36.26 2.27
2476 2549 3.026630 CCTTTCCCGAAAAAGGCTTTC 57.973 47.619 13.76 0.41 46.43 2.62
2477 2550 2.607038 CCTTTCCCGAAAAAGGCTTTCG 60.607 50.000 13.76 13.37 46.43 3.46
2478 2551 0.312729 TTCCCGAAAAAGGCTTTCGC 59.687 50.000 13.76 7.41 46.89 4.70
2488 2561 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
2489 2562 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
2490 2563 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
2491 2564 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
2492 2565 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
2493 2566 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
2494 2567 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
2495 2568 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
2523 2596 2.795121 CGAAGAGCACACATACAAGC 57.205 50.000 0.00 0.00 0.00 4.01
2524 2597 2.068519 CGAAGAGCACACATACAAGCA 58.931 47.619 0.00 0.00 0.00 3.91
2525 2598 2.159787 CGAAGAGCACACATACAAGCAC 60.160 50.000 0.00 0.00 0.00 4.40
2526 2599 2.847327 AGAGCACACATACAAGCACT 57.153 45.000 0.00 0.00 0.00 4.40
2527 2600 3.961480 AGAGCACACATACAAGCACTA 57.039 42.857 0.00 0.00 0.00 2.74
2528 2601 3.854666 AGAGCACACATACAAGCACTAG 58.145 45.455 0.00 0.00 0.00 2.57
2529 2602 3.259374 AGAGCACACATACAAGCACTAGT 59.741 43.478 0.00 0.00 0.00 2.57
2530 2603 3.589988 AGCACACATACAAGCACTAGTC 58.410 45.455 0.00 0.00 0.00 2.59
2531 2604 2.673368 GCACACATACAAGCACTAGTCC 59.327 50.000 0.00 0.00 0.00 3.85
2532 2605 3.864540 GCACACATACAAGCACTAGTCCA 60.865 47.826 0.00 0.00 0.00 4.02
2533 2606 3.928992 CACACATACAAGCACTAGTCCAG 59.071 47.826 0.00 0.00 0.00 3.86
2534 2607 3.832490 ACACATACAAGCACTAGTCCAGA 59.168 43.478 0.00 0.00 0.00 3.86
2535 2608 4.283467 ACACATACAAGCACTAGTCCAGAA 59.717 41.667 0.00 0.00 0.00 3.02
2536 2609 4.627467 CACATACAAGCACTAGTCCAGAAC 59.373 45.833 0.00 0.00 0.00 3.01
2537 2610 4.283467 ACATACAAGCACTAGTCCAGAACA 59.717 41.667 0.00 0.00 0.00 3.18
2538 2611 3.113260 ACAAGCACTAGTCCAGAACAC 57.887 47.619 0.00 0.00 0.00 3.32
2539 2612 2.434336 ACAAGCACTAGTCCAGAACACA 59.566 45.455 0.00 0.00 0.00 3.72
2540 2613 3.118408 ACAAGCACTAGTCCAGAACACAA 60.118 43.478 0.00 0.00 0.00 3.33
2541 2614 3.838244 AGCACTAGTCCAGAACACAAA 57.162 42.857 0.00 0.00 0.00 2.83
2542 2615 3.467803 AGCACTAGTCCAGAACACAAAC 58.532 45.455 0.00 0.00 0.00 2.93
2543 2616 3.118408 AGCACTAGTCCAGAACACAAACA 60.118 43.478 0.00 0.00 0.00 2.83
2544 2617 3.002348 GCACTAGTCCAGAACACAAACAC 59.998 47.826 0.00 0.00 0.00 3.32
2545 2618 3.560068 CACTAGTCCAGAACACAAACACC 59.440 47.826 0.00 0.00 0.00 4.16
2546 2619 2.052782 AGTCCAGAACACAAACACCC 57.947 50.000 0.00 0.00 0.00 4.61
2547 2620 1.283613 AGTCCAGAACACAAACACCCA 59.716 47.619 0.00 0.00 0.00 4.51
2548 2621 2.091885 AGTCCAGAACACAAACACCCAT 60.092 45.455 0.00 0.00 0.00 4.00
2549 2622 2.034558 GTCCAGAACACAAACACCCATG 59.965 50.000 0.00 0.00 0.00 3.66
2550 2623 2.031120 CCAGAACACAAACACCCATGT 58.969 47.619 0.00 0.00 42.46 3.21
2551 2624 2.034558 CCAGAACACAAACACCCATGTC 59.965 50.000 0.00 0.00 38.45 3.06
2552 2625 2.951642 CAGAACACAAACACCCATGTCT 59.048 45.455 0.00 0.00 38.45 3.41
2553 2626 3.003689 CAGAACACAAACACCCATGTCTC 59.996 47.826 0.00 0.00 38.45 3.36
2554 2627 2.727123 ACACAAACACCCATGTCTCA 57.273 45.000 0.00 0.00 38.45 3.27
2555 2628 2.297701 ACACAAACACCCATGTCTCAC 58.702 47.619 0.00 0.00 38.45 3.51
2556 2629 1.264020 CACAAACACCCATGTCTCACG 59.736 52.381 0.00 0.00 38.45 4.35
2557 2630 0.874390 CAAACACCCATGTCTCACGG 59.126 55.000 0.00 0.00 38.45 4.94
2558 2631 0.250727 AAACACCCATGTCTCACGGG 60.251 55.000 0.00 0.00 46.22 5.28
2559 2632 1.125093 AACACCCATGTCTCACGGGA 61.125 55.000 7.90 0.00 43.21 5.14
2560 2633 1.125093 ACACCCATGTCTCACGGGAA 61.125 55.000 7.90 0.00 43.21 3.97
2561 2634 0.391661 CACCCATGTCTCACGGGAAG 60.392 60.000 7.90 0.00 43.21 3.46
2562 2635 0.544357 ACCCATGTCTCACGGGAAGA 60.544 55.000 7.90 0.00 43.21 2.87
2563 2636 0.613260 CCCATGTCTCACGGGAAGAA 59.387 55.000 0.00 0.00 43.21 2.52
2564 2637 1.406069 CCCATGTCTCACGGGAAGAAG 60.406 57.143 0.00 0.00 43.21 2.85
2565 2638 1.276421 CCATGTCTCACGGGAAGAAGT 59.724 52.381 0.00 0.00 0.00 3.01
2566 2639 2.496070 CCATGTCTCACGGGAAGAAGTA 59.504 50.000 0.00 0.00 0.00 2.24
2567 2640 3.512680 CATGTCTCACGGGAAGAAGTAC 58.487 50.000 0.00 0.00 0.00 2.73
2568 2641 2.589720 TGTCTCACGGGAAGAAGTACA 58.410 47.619 0.00 0.00 0.00 2.90
2569 2642 2.960384 TGTCTCACGGGAAGAAGTACAA 59.040 45.455 0.00 0.00 0.00 2.41
2570 2643 3.385433 TGTCTCACGGGAAGAAGTACAAA 59.615 43.478 0.00 0.00 0.00 2.83
2571 2644 4.039973 TGTCTCACGGGAAGAAGTACAAAT 59.960 41.667 0.00 0.00 0.00 2.32
2572 2645 4.389077 GTCTCACGGGAAGAAGTACAAATG 59.611 45.833 0.00 0.00 0.00 2.32
2573 2646 4.039973 TCTCACGGGAAGAAGTACAAATGT 59.960 41.667 0.00 0.00 0.00 2.71
2574 2647 4.710324 TCACGGGAAGAAGTACAAATGTT 58.290 39.130 0.00 0.00 0.00 2.71
2575 2648 4.753107 TCACGGGAAGAAGTACAAATGTTC 59.247 41.667 0.00 0.00 0.00 3.18
2576 2649 4.755123 CACGGGAAGAAGTACAAATGTTCT 59.245 41.667 0.00 0.00 31.71 3.01
2577 2650 4.755123 ACGGGAAGAAGTACAAATGTTCTG 59.245 41.667 0.00 0.00 30.84 3.02
2578 2651 4.378459 CGGGAAGAAGTACAAATGTTCTGC 60.378 45.833 0.00 0.00 30.84 4.26
2579 2652 4.378459 GGGAAGAAGTACAAATGTTCTGCG 60.378 45.833 0.00 0.00 30.84 5.18
2580 2653 4.378459 GGAAGAAGTACAAATGTTCTGCGG 60.378 45.833 0.00 0.00 30.84 5.69
2581 2654 4.002906 AGAAGTACAAATGTTCTGCGGA 57.997 40.909 0.00 0.00 0.00 5.54
2582 2655 3.997021 AGAAGTACAAATGTTCTGCGGAG 59.003 43.478 0.00 0.00 0.00 4.63
2583 2656 2.699954 AGTACAAATGTTCTGCGGAGG 58.300 47.619 3.37 0.00 0.00 4.30
2584 2657 1.737793 GTACAAATGTTCTGCGGAGGG 59.262 52.381 3.37 0.00 0.00 4.30
2585 2658 1.244019 ACAAATGTTCTGCGGAGGGC 61.244 55.000 3.37 0.00 43.96 5.19
2594 2667 2.281484 GCGGAGGGCACAACTCAA 60.281 61.111 0.00 0.00 42.87 3.02
2595 2668 2.617274 GCGGAGGGCACAACTCAAC 61.617 63.158 0.00 0.00 42.87 3.18
2596 2669 1.227823 CGGAGGGCACAACTCAACA 60.228 57.895 0.00 0.00 36.70 3.33
2597 2670 0.817634 CGGAGGGCACAACTCAACAA 60.818 55.000 0.00 0.00 36.70 2.83
2598 2671 0.954452 GGAGGGCACAACTCAACAAG 59.046 55.000 0.00 0.00 36.70 3.16
2599 2672 0.312102 GAGGGCACAACTCAACAAGC 59.688 55.000 0.00 0.00 35.09 4.01
2600 2673 1.109323 AGGGCACAACTCAACAAGCC 61.109 55.000 0.00 0.00 41.29 4.35
2601 2674 1.363807 GGCACAACTCAACAAGCCC 59.636 57.895 0.00 0.00 36.17 5.19
2602 2675 1.109323 GGCACAACTCAACAAGCCCT 61.109 55.000 0.00 0.00 36.17 5.19
2603 2676 1.604604 GCACAACTCAACAAGCCCTA 58.395 50.000 0.00 0.00 0.00 3.53
2604 2677 1.953686 GCACAACTCAACAAGCCCTAA 59.046 47.619 0.00 0.00 0.00 2.69
2605 2678 2.558359 GCACAACTCAACAAGCCCTAAT 59.442 45.455 0.00 0.00 0.00 1.73
2606 2679 3.756434 GCACAACTCAACAAGCCCTAATA 59.244 43.478 0.00 0.00 0.00 0.98
2607 2680 4.217550 GCACAACTCAACAAGCCCTAATAA 59.782 41.667 0.00 0.00 0.00 1.40
2608 2681 5.278758 GCACAACTCAACAAGCCCTAATAAA 60.279 40.000 0.00 0.00 0.00 1.40
2609 2682 6.737346 GCACAACTCAACAAGCCCTAATAAAA 60.737 38.462 0.00 0.00 0.00 1.52
2610 2683 7.206687 CACAACTCAACAAGCCCTAATAAAAA 58.793 34.615 0.00 0.00 0.00 1.94
2627 2700 1.717032 AAAAGAAAACAGGAGGGGCC 58.283 50.000 0.00 0.00 0.00 5.80
2628 2701 0.539669 AAAGAAAACAGGAGGGGCCG 60.540 55.000 0.00 0.00 43.43 6.13
2629 2702 2.361230 GAAAACAGGAGGGGCCGG 60.361 66.667 0.00 0.00 43.43 6.13
2630 2703 2.856988 AAAACAGGAGGGGCCGGA 60.857 61.111 5.05 0.00 43.43 5.14
2631 2704 2.821679 GAAAACAGGAGGGGCCGGAG 62.822 65.000 5.05 0.00 43.43 4.63
2644 2717 4.113617 CGGAGGGACCAGAGACAA 57.886 61.111 0.00 0.00 38.90 3.18
2645 2718 1.893786 CGGAGGGACCAGAGACAAG 59.106 63.158 0.00 0.00 38.90 3.16
2646 2719 0.900647 CGGAGGGACCAGAGACAAGT 60.901 60.000 0.00 0.00 38.90 3.16
2647 2720 0.899019 GGAGGGACCAGAGACAAGTC 59.101 60.000 0.00 0.00 38.79 3.01
2651 2724 3.523806 GACCAGAGACAAGTCCAGC 57.476 57.895 0.00 0.00 0.00 4.85
2652 2725 0.389166 GACCAGAGACAAGTCCAGCG 60.389 60.000 0.00 0.00 0.00 5.18
2653 2726 1.739562 CCAGAGACAAGTCCAGCGC 60.740 63.158 0.00 0.00 0.00 5.92
2654 2727 1.739562 CAGAGACAAGTCCAGCGCC 60.740 63.158 2.29 0.00 0.00 6.53
2655 2728 1.910772 AGAGACAAGTCCAGCGCCT 60.911 57.895 2.29 0.00 0.00 5.52
2656 2729 0.612174 AGAGACAAGTCCAGCGCCTA 60.612 55.000 2.29 0.00 0.00 3.93
2657 2730 0.246635 GAGACAAGTCCAGCGCCTAA 59.753 55.000 2.29 0.00 0.00 2.69
2658 2731 0.905357 AGACAAGTCCAGCGCCTAAT 59.095 50.000 2.29 0.00 0.00 1.73
2659 2732 1.134670 AGACAAGTCCAGCGCCTAATC 60.135 52.381 2.29 0.00 0.00 1.75
2660 2733 0.613260 ACAAGTCCAGCGCCTAATCA 59.387 50.000 2.29 0.00 0.00 2.57
2661 2734 1.293924 CAAGTCCAGCGCCTAATCAG 58.706 55.000 2.29 0.00 0.00 2.90
2662 2735 0.179000 AAGTCCAGCGCCTAATCAGG 59.821 55.000 2.29 0.00 45.77 3.86
2663 2736 0.978146 AGTCCAGCGCCTAATCAGGT 60.978 55.000 2.29 0.00 44.68 4.00
2664 2737 0.107654 GTCCAGCGCCTAATCAGGTT 60.108 55.000 2.29 0.00 44.68 3.50
2665 2738 0.178068 TCCAGCGCCTAATCAGGTTC 59.822 55.000 2.29 0.00 44.68 3.62
2666 2739 0.815615 CCAGCGCCTAATCAGGTTCC 60.816 60.000 2.29 0.00 44.68 3.62
3054 3127 2.435938 GGTCGGCGATGAAGGCAA 60.436 61.111 14.79 0.00 36.37 4.52
3107 3180 1.375908 CCGCCAGAGCTGCAAGTAA 60.376 57.895 1.02 0.00 36.60 2.24
3143 4027 3.807538 GCGTCAGTAGCCCGTCGA 61.808 66.667 0.00 0.00 0.00 4.20
3153 4037 1.218316 GCCCGTCGAAGAGGAATGT 59.782 57.895 0.00 0.00 46.48 2.71
3178 4062 2.866762 GGATCACAAGTCTATTGCGGAC 59.133 50.000 0.00 0.00 0.00 4.79
3179 4063 2.380084 TCACAAGTCTATTGCGGACC 57.620 50.000 0.00 0.00 34.56 4.46
3180 4064 1.621317 TCACAAGTCTATTGCGGACCA 59.379 47.619 0.00 0.00 34.56 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.010213 TGAGCTAAAACCCTTTTTACGCATT 59.990 36.000 0.00 0.00 36.32 3.56
1 2 4.521256 TGAGCTAAAACCCTTTTTACGCAT 59.479 37.500 0.00 0.00 36.32 4.73
2 3 3.884091 TGAGCTAAAACCCTTTTTACGCA 59.116 39.130 0.00 4.42 36.32 5.24
3 4 4.492791 TGAGCTAAAACCCTTTTTACGC 57.507 40.909 0.00 0.00 36.32 4.42
4 5 6.090783 GGATTGAGCTAAAACCCTTTTTACG 58.909 40.000 0.00 0.00 36.32 3.18
5 6 6.988522 TGGATTGAGCTAAAACCCTTTTTAC 58.011 36.000 7.63 0.00 36.32 2.01
6 7 7.507616 TCTTGGATTGAGCTAAAACCCTTTTTA 59.492 33.333 7.63 0.00 36.32 1.52
7 8 6.326323 TCTTGGATTGAGCTAAAACCCTTTTT 59.674 34.615 7.63 0.00 38.51 1.94
8 9 5.838521 TCTTGGATTGAGCTAAAACCCTTTT 59.161 36.000 7.63 0.00 36.67 2.27
9 10 5.393866 TCTTGGATTGAGCTAAAACCCTTT 58.606 37.500 7.63 0.00 0.00 3.11
10 11 4.998051 TCTTGGATTGAGCTAAAACCCTT 58.002 39.130 7.63 0.00 0.00 3.95
11 12 4.657814 TCTTGGATTGAGCTAAAACCCT 57.342 40.909 7.63 0.00 0.00 4.34
12 13 5.418840 TGAATCTTGGATTGAGCTAAAACCC 59.581 40.000 7.63 3.47 0.00 4.11
13 14 6.151817 AGTGAATCTTGGATTGAGCTAAAACC 59.848 38.462 3.03 3.03 0.00 3.27
14 15 7.150783 AGTGAATCTTGGATTGAGCTAAAAC 57.849 36.000 0.00 0.00 0.00 2.43
15 16 8.730680 GTTAGTGAATCTTGGATTGAGCTAAAA 58.269 33.333 0.00 0.00 0.00 1.52
16 17 7.882791 TGTTAGTGAATCTTGGATTGAGCTAAA 59.117 33.333 0.00 0.00 0.00 1.85
17 18 7.334421 GTGTTAGTGAATCTTGGATTGAGCTAA 59.666 37.037 0.00 2.15 0.00 3.09
18 19 6.818644 GTGTTAGTGAATCTTGGATTGAGCTA 59.181 38.462 0.00 0.00 0.00 3.32
19 20 5.645497 GTGTTAGTGAATCTTGGATTGAGCT 59.355 40.000 0.00 0.00 0.00 4.09
20 21 5.645497 AGTGTTAGTGAATCTTGGATTGAGC 59.355 40.000 0.00 0.00 0.00 4.26
21 22 6.402983 GCAGTGTTAGTGAATCTTGGATTGAG 60.403 42.308 0.00 0.00 0.00 3.02
22 23 5.412594 GCAGTGTTAGTGAATCTTGGATTGA 59.587 40.000 0.00 0.00 0.00 2.57
23 24 5.181811 TGCAGTGTTAGTGAATCTTGGATTG 59.818 40.000 0.00 0.00 0.00 2.67
24 25 5.316167 TGCAGTGTTAGTGAATCTTGGATT 58.684 37.500 0.00 0.00 0.00 3.01
25 26 4.910195 TGCAGTGTTAGTGAATCTTGGAT 58.090 39.130 0.00 0.00 0.00 3.41
26 27 4.350368 TGCAGTGTTAGTGAATCTTGGA 57.650 40.909 0.00 0.00 0.00 3.53
27 28 4.614535 GCTTGCAGTGTTAGTGAATCTTGG 60.615 45.833 0.00 0.00 0.00 3.61
28 29 4.214971 AGCTTGCAGTGTTAGTGAATCTTG 59.785 41.667 0.00 0.00 0.00 3.02
29 30 4.214971 CAGCTTGCAGTGTTAGTGAATCTT 59.785 41.667 0.00 0.00 0.00 2.40
30 31 3.750130 CAGCTTGCAGTGTTAGTGAATCT 59.250 43.478 0.00 0.00 0.00 2.40
31 32 3.120060 CCAGCTTGCAGTGTTAGTGAATC 60.120 47.826 0.00 0.00 0.00 2.52
32 33 2.816087 CCAGCTTGCAGTGTTAGTGAAT 59.184 45.455 0.00 0.00 0.00 2.57
33 34 2.221169 CCAGCTTGCAGTGTTAGTGAA 58.779 47.619 0.00 0.00 0.00 3.18
85 86 9.197694 TCCACCGTTTATTTTTAAATCATGTTG 57.802 29.630 0.00 0.00 0.00 3.33
91 92 8.865978 GTCCAATCCACCGTTTATTTTTAAATC 58.134 33.333 0.00 0.00 0.00 2.17
94 95 7.146648 GTGTCCAATCCACCGTTTATTTTTAA 58.853 34.615 0.00 0.00 0.00 1.52
158 163 0.524392 CAAGGAACGCACGCAACAAA 60.524 50.000 0.00 0.00 0.00 2.83
280 285 3.631250 ACGAGACAATGGCCCATTTAAT 58.369 40.909 6.14 0.00 31.05 1.40
284 289 2.238646 TCTTACGAGACAATGGCCCATT 59.761 45.455 2.23 2.23 34.04 3.16
301 306 6.609212 AGATTCTCAGACCAGCTAACATCTTA 59.391 38.462 0.00 0.00 0.00 2.10
303 308 4.961730 AGATTCTCAGACCAGCTAACATCT 59.038 41.667 0.00 0.00 0.00 2.90
304 309 5.275067 AGATTCTCAGACCAGCTAACATC 57.725 43.478 0.00 0.00 0.00 3.06
310 315 3.518705 ACATCAAGATTCTCAGACCAGCT 59.481 43.478 0.00 0.00 0.00 4.24
312 317 8.503458 AAAATACATCAAGATTCTCAGACCAG 57.497 34.615 0.00 0.00 0.00 4.00
354 359 6.285990 AGTTCACCGAAAGTACAAACACTAT 58.714 36.000 0.00 0.00 0.00 2.12
356 361 4.510571 AGTTCACCGAAAGTACAAACACT 58.489 39.130 0.00 0.00 0.00 3.55
357 362 4.870221 AGTTCACCGAAAGTACAAACAC 57.130 40.909 0.00 0.00 0.00 3.32
358 363 5.411977 TCAAAGTTCACCGAAAGTACAAACA 59.588 36.000 0.00 0.00 0.00 2.83
359 364 5.871539 TCAAAGTTCACCGAAAGTACAAAC 58.128 37.500 0.00 0.00 0.00 2.93
370 375 8.752766 TTAGTAAGACTTATCAAAGTTCACCG 57.247 34.615 0.00 0.00 46.09 4.94
418 426 4.234170 TGATATTCCCTCAATCCCTCCT 57.766 45.455 0.00 0.00 0.00 3.69
420 428 6.658391 CAGAAATGATATTCCCTCAATCCCTC 59.342 42.308 0.00 0.00 0.00 4.30
421 429 6.103797 ACAGAAATGATATTCCCTCAATCCCT 59.896 38.462 0.00 0.00 0.00 4.20
422 430 6.310149 ACAGAAATGATATTCCCTCAATCCC 58.690 40.000 0.00 0.00 0.00 3.85
423 431 7.830099 AACAGAAATGATATTCCCTCAATCC 57.170 36.000 0.00 0.00 0.00 3.01
424 432 9.525409 CAAAACAGAAATGATATTCCCTCAATC 57.475 33.333 0.00 0.00 0.00 2.67
425 433 7.983484 GCAAAACAGAAATGATATTCCCTCAAT 59.017 33.333 0.00 0.00 0.00 2.57
426 434 7.039152 TGCAAAACAGAAATGATATTCCCTCAA 60.039 33.333 0.00 0.00 0.00 3.02
427 435 6.436847 TGCAAAACAGAAATGATATTCCCTCA 59.563 34.615 0.00 0.00 0.00 3.86
528 536 0.670546 ATGCACTCCTACACGCACAC 60.671 55.000 0.00 0.00 37.17 3.82
532 540 1.261619 GCAATATGCACTCCTACACGC 59.738 52.381 0.00 0.00 44.26 5.34
669 678 2.884639 GAGGCAAAGGTGACAGCTAAAA 59.115 45.455 7.75 0.00 33.83 1.52
701 710 3.188460 AGCAGCGAACGTATTCATGTTTT 59.812 39.130 0.00 0.00 33.95 2.43
753 762 3.245336 GGGAGTAGGTAGCACTAGCCTAT 60.245 52.174 3.34 0.00 43.56 2.57
785 794 7.996644 TCTAGTACAAAGTTGGGTCATCTTTTT 59.003 33.333 0.00 0.41 33.00 1.94
786 795 7.514721 TCTAGTACAAAGTTGGGTCATCTTTT 58.485 34.615 0.00 0.00 33.00 2.27
787 796 7.074653 TCTAGTACAAAGTTGGGTCATCTTT 57.925 36.000 0.00 0.00 34.84 2.52
788 797 6.681729 TCTAGTACAAAGTTGGGTCATCTT 57.318 37.500 0.00 0.00 0.00 2.40
789 798 6.440647 TCATCTAGTACAAAGTTGGGTCATCT 59.559 38.462 0.00 0.00 0.00 2.90
790 799 6.535508 GTCATCTAGTACAAAGTTGGGTCATC 59.464 42.308 0.00 0.00 0.00 2.92
791 800 6.407202 GTCATCTAGTACAAAGTTGGGTCAT 58.593 40.000 0.00 0.00 0.00 3.06
792 801 5.279809 GGTCATCTAGTACAAAGTTGGGTCA 60.280 44.000 0.00 0.00 0.00 4.02
793 802 5.176592 GGTCATCTAGTACAAAGTTGGGTC 58.823 45.833 0.00 0.00 0.00 4.46
794 803 4.019591 GGGTCATCTAGTACAAAGTTGGGT 60.020 45.833 0.00 0.00 0.00 4.51
795 804 4.019681 TGGGTCATCTAGTACAAAGTTGGG 60.020 45.833 0.00 0.00 0.00 4.12
796 805 5.160607 TGGGTCATCTAGTACAAAGTTGG 57.839 43.478 0.00 0.00 0.00 3.77
797 806 6.231211 AGTTGGGTCATCTAGTACAAAGTTG 58.769 40.000 0.00 0.00 0.00 3.16
798 807 6.435292 AGTTGGGTCATCTAGTACAAAGTT 57.565 37.500 0.00 0.00 0.00 2.66
799 808 6.435292 AAGTTGGGTCATCTAGTACAAAGT 57.565 37.500 0.00 0.00 0.00 2.66
800 809 6.710744 ACAAAGTTGGGTCATCTAGTACAAAG 59.289 38.462 0.00 0.00 0.00 2.77
801 810 6.597562 ACAAAGTTGGGTCATCTAGTACAAA 58.402 36.000 0.00 0.00 0.00 2.83
802 811 6.182507 ACAAAGTTGGGTCATCTAGTACAA 57.817 37.500 0.00 0.00 0.00 2.41
803 812 5.818678 ACAAAGTTGGGTCATCTAGTACA 57.181 39.130 0.00 0.00 0.00 2.90
835 844 8.932791 CCAAAATAGATGACGTAACTTTGTACT 58.067 33.333 0.00 0.00 0.00 2.73
836 845 8.928733 TCCAAAATAGATGACGTAACTTTGTAC 58.071 33.333 0.00 0.00 0.00 2.90
837 846 9.491675 TTCCAAAATAGATGACGTAACTTTGTA 57.508 29.630 0.00 0.00 0.00 2.41
838 847 7.972832 TCCAAAATAGATGACGTAACTTTGT 57.027 32.000 0.00 0.00 0.00 2.83
839 848 8.504005 AGTTCCAAAATAGATGACGTAACTTTG 58.496 33.333 0.00 0.00 0.00 2.77
840 849 8.504005 CAGTTCCAAAATAGATGACGTAACTTT 58.496 33.333 0.00 0.00 0.00 2.66
841 850 7.876068 TCAGTTCCAAAATAGATGACGTAACTT 59.124 33.333 0.00 0.00 0.00 2.66
842 851 7.383687 TCAGTTCCAAAATAGATGACGTAACT 58.616 34.615 0.00 0.00 0.00 2.24
843 852 7.201530 CCTCAGTTCCAAAATAGATGACGTAAC 60.202 40.741 0.00 0.00 0.00 2.50
844 853 6.816640 CCTCAGTTCCAAAATAGATGACGTAA 59.183 38.462 0.00 0.00 0.00 3.18
845 854 6.338146 CCTCAGTTCCAAAATAGATGACGTA 58.662 40.000 0.00 0.00 0.00 3.57
846 855 5.178797 CCTCAGTTCCAAAATAGATGACGT 58.821 41.667 0.00 0.00 0.00 4.34
847 856 4.572389 CCCTCAGTTCCAAAATAGATGACG 59.428 45.833 0.00 0.00 0.00 4.35
848 857 5.745227 TCCCTCAGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 0.00 3.06
849 858 5.488919 ACTCCCTCAGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 26.56 2.92
850 859 5.749462 ACTCCCTCAGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 26.56 2.90
851 860 7.127955 ACATACTCCCTCAGTTCCAAAATAGAT 59.872 37.037 0.00 0.00 36.43 1.98
852 861 6.443849 ACATACTCCCTCAGTTCCAAAATAGA 59.556 38.462 0.00 0.00 36.43 1.98
853 862 6.653989 ACATACTCCCTCAGTTCCAAAATAG 58.346 40.000 0.00 0.00 36.43 1.73
854 863 6.636454 ACATACTCCCTCAGTTCCAAAATA 57.364 37.500 0.00 0.00 36.43 1.40
855 864 5.520748 ACATACTCCCTCAGTTCCAAAAT 57.479 39.130 0.00 0.00 36.43 1.82
856 865 4.993705 ACATACTCCCTCAGTTCCAAAA 57.006 40.909 0.00 0.00 36.43 2.44
857 866 5.091552 AGTACATACTCCCTCAGTTCCAAA 58.908 41.667 0.00 0.00 36.43 3.28
858 867 4.684724 AGTACATACTCCCTCAGTTCCAA 58.315 43.478 0.00 0.00 36.43 3.53
859 868 4.332683 AGTACATACTCCCTCAGTTCCA 57.667 45.455 0.00 0.00 36.43 3.53
860 869 6.069331 TGATAGTACATACTCCCTCAGTTCC 58.931 44.000 0.00 0.00 37.73 3.62
861 870 7.068348 TGTTGATAGTACATACTCCCTCAGTTC 59.932 40.741 0.00 0.00 37.73 3.01
862 871 6.895756 TGTTGATAGTACATACTCCCTCAGTT 59.104 38.462 0.00 0.00 37.73 3.16
863 872 6.432581 TGTTGATAGTACATACTCCCTCAGT 58.567 40.000 0.00 0.00 37.73 3.41
864 873 6.961360 TGTTGATAGTACATACTCCCTCAG 57.039 41.667 0.00 0.00 37.73 3.35
865 874 7.914427 AATGTTGATAGTACATACTCCCTCA 57.086 36.000 0.00 0.00 35.26 3.86
866 875 7.171678 GCAAATGTTGATAGTACATACTCCCTC 59.828 40.741 0.00 0.00 35.26 4.30
867 876 6.992715 GCAAATGTTGATAGTACATACTCCCT 59.007 38.462 0.00 0.00 35.26 4.20
868 877 6.765989 TGCAAATGTTGATAGTACATACTCCC 59.234 38.462 0.00 0.00 35.26 4.30
869 878 7.786178 TGCAAATGTTGATAGTACATACTCC 57.214 36.000 0.00 0.00 35.26 3.85
967 979 5.309543 TCTTTCTGGTCACTCTCCCATTTTA 59.690 40.000 0.00 0.00 0.00 1.52
972 984 2.158310 TCTCTTTCTGGTCACTCTCCCA 60.158 50.000 0.00 0.00 0.00 4.37
995 1007 4.148079 CTCTATGGTCTGTGCCATCTCTA 58.852 47.826 9.12 0.00 45.47 2.43
998 1010 2.045524 CCTCTATGGTCTGTGCCATCT 58.954 52.381 9.12 0.00 45.47 2.90
999 1011 2.540265 CCTCTATGGTCTGTGCCATC 57.460 55.000 9.12 0.00 45.47 3.51
1020 1041 3.005539 AGCTCAGCATCCGTGGGT 61.006 61.111 0.00 0.00 0.00 4.51
1070 1091 2.861261 TGGAGGAGAGGTAGTAGAGGT 58.139 52.381 0.00 0.00 0.00 3.85
1288 1312 2.110213 GGACAACGGTGTGAGGCA 59.890 61.111 12.89 0.00 38.41 4.75
1362 1386 3.681835 GGCGAGGTCACACCGAGT 61.682 66.667 0.00 0.00 44.90 4.18
1410 1434 2.334977 TGGTCCTTCTTGAACCAGCTA 58.665 47.619 0.00 0.00 38.14 3.32
1443 1467 1.003718 GTCCTCAAAGGGTGACGGG 60.004 63.158 0.00 0.00 35.59 5.28
1841 1898 6.369059 AGCATTAAGATCAAGTTCCGAATG 57.631 37.500 0.00 0.00 0.00 2.67
2100 2171 2.078392 GAACCCCGCTTCAACGAATAA 58.922 47.619 0.00 0.00 34.06 1.40
2246 2317 4.041198 AGCTGGGCACTTAAACTACTTACA 59.959 41.667 0.00 0.00 0.00 2.41
2277 2350 3.131577 ACATTGCATGGACCATAAAGCAG 59.868 43.478 15.33 9.46 33.14 4.24
2340 2413 5.772521 ACAAACCATCTTTAGCAACATGAC 58.227 37.500 0.00 0.00 0.00 3.06
2393 2466 8.413229 CAGAAGGGTCAAGAATGTTTTTCTTAA 58.587 33.333 0.62 0.00 36.69 1.85
2401 2474 2.158475 TGCCAGAAGGGTCAAGAATGTT 60.158 45.455 0.00 0.00 39.65 2.71
2403 2476 2.089980 CTGCCAGAAGGGTCAAGAATG 58.910 52.381 0.00 0.00 39.65 2.67
2404 2477 1.615384 GCTGCCAGAAGGGTCAAGAAT 60.615 52.381 0.00 0.00 39.65 2.40
2472 2545 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
2473 2546 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
2474 2547 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
2484 2557 7.528307 TCTTCGCGGTTTGCTTTATTTATAAA 58.472 30.769 6.13 0.00 43.27 1.40
2485 2558 7.074507 TCTTCGCGGTTTGCTTTATTTATAA 57.925 32.000 6.13 0.00 43.27 0.98
2486 2559 6.665474 TCTTCGCGGTTTGCTTTATTTATA 57.335 33.333 6.13 0.00 43.27 0.98
2487 2560 5.554822 TCTTCGCGGTTTGCTTTATTTAT 57.445 34.783 6.13 0.00 43.27 1.40
2488 2561 4.670735 GCTCTTCGCGGTTTGCTTTATTTA 60.671 41.667 6.13 0.00 43.27 1.40
2489 2562 3.821841 CTCTTCGCGGTTTGCTTTATTT 58.178 40.909 6.13 0.00 43.27 1.40
2490 2563 2.414161 GCTCTTCGCGGTTTGCTTTATT 60.414 45.455 6.13 0.00 43.27 1.40
2491 2564 1.130561 GCTCTTCGCGGTTTGCTTTAT 59.869 47.619 6.13 0.00 43.27 1.40
2492 2565 0.515564 GCTCTTCGCGGTTTGCTTTA 59.484 50.000 6.13 0.00 43.27 1.85
2493 2566 1.282875 GCTCTTCGCGGTTTGCTTT 59.717 52.632 6.13 0.00 43.27 3.51
2494 2567 1.891919 TGCTCTTCGCGGTTTGCTT 60.892 52.632 6.13 0.00 43.27 3.91
2495 2568 2.280797 TGCTCTTCGCGGTTTGCT 60.281 55.556 6.13 0.00 43.27 3.91
2496 2569 2.127232 GTGCTCTTCGCGGTTTGC 60.127 61.111 6.13 7.21 43.27 3.68
2497 2570 1.082756 GTGTGCTCTTCGCGGTTTG 60.083 57.895 6.13 0.00 43.27 2.93
2498 2571 0.884704 ATGTGTGCTCTTCGCGGTTT 60.885 50.000 6.13 0.00 43.27 3.27
2499 2572 0.037697 TATGTGTGCTCTTCGCGGTT 60.038 50.000 6.13 0.00 43.27 4.44
2500 2573 0.736325 GTATGTGTGCTCTTCGCGGT 60.736 55.000 6.13 0.00 43.27 5.68
2501 2574 0.735978 TGTATGTGTGCTCTTCGCGG 60.736 55.000 6.13 0.00 43.27 6.46
2502 2575 1.059692 CTTGTATGTGTGCTCTTCGCG 59.940 52.381 0.00 0.00 43.27 5.87
2503 2576 1.201965 GCTTGTATGTGTGCTCTTCGC 60.202 52.381 0.00 0.00 39.77 4.70
2504 2577 2.068519 TGCTTGTATGTGTGCTCTTCG 58.931 47.619 0.00 0.00 0.00 3.79
2505 2578 3.070018 AGTGCTTGTATGTGTGCTCTTC 58.930 45.455 0.00 0.00 0.00 2.87
2506 2579 3.131709 AGTGCTTGTATGTGTGCTCTT 57.868 42.857 0.00 0.00 0.00 2.85
2507 2580 2.847327 AGTGCTTGTATGTGTGCTCT 57.153 45.000 0.00 0.00 0.00 4.09
2508 2581 3.589988 ACTAGTGCTTGTATGTGTGCTC 58.410 45.455 0.00 0.00 0.00 4.26
2509 2582 3.589988 GACTAGTGCTTGTATGTGTGCT 58.410 45.455 0.00 0.00 0.00 4.40
2510 2583 2.673368 GGACTAGTGCTTGTATGTGTGC 59.327 50.000 7.20 0.00 0.00 4.57
2511 2584 3.925379 TGGACTAGTGCTTGTATGTGTG 58.075 45.455 15.92 0.00 0.00 3.82
2512 2585 3.832490 TCTGGACTAGTGCTTGTATGTGT 59.168 43.478 15.92 0.00 0.00 3.72
2513 2586 4.456280 TCTGGACTAGTGCTTGTATGTG 57.544 45.455 15.92 0.00 0.00 3.21
2514 2587 4.283467 TGTTCTGGACTAGTGCTTGTATGT 59.717 41.667 15.92 0.00 0.00 2.29
2515 2588 4.627467 GTGTTCTGGACTAGTGCTTGTATG 59.373 45.833 15.92 0.00 0.00 2.39
2516 2589 4.283467 TGTGTTCTGGACTAGTGCTTGTAT 59.717 41.667 15.92 0.00 0.00 2.29
2517 2590 3.639561 TGTGTTCTGGACTAGTGCTTGTA 59.360 43.478 15.92 0.15 0.00 2.41
2518 2591 2.434336 TGTGTTCTGGACTAGTGCTTGT 59.566 45.455 15.92 0.00 0.00 3.16
2519 2592 3.111853 TGTGTTCTGGACTAGTGCTTG 57.888 47.619 15.92 8.55 0.00 4.01
2520 2593 3.838244 TTGTGTTCTGGACTAGTGCTT 57.162 42.857 15.92 0.00 0.00 3.91
2521 2594 3.118408 TGTTTGTGTTCTGGACTAGTGCT 60.118 43.478 15.92 0.00 0.00 4.40
2522 2595 3.002348 GTGTTTGTGTTCTGGACTAGTGC 59.998 47.826 7.56 7.56 0.00 4.40
2523 2596 3.560068 GGTGTTTGTGTTCTGGACTAGTG 59.440 47.826 0.00 0.00 0.00 2.74
2524 2597 3.433173 GGGTGTTTGTGTTCTGGACTAGT 60.433 47.826 0.00 0.00 0.00 2.57
2525 2598 3.139077 GGGTGTTTGTGTTCTGGACTAG 58.861 50.000 0.00 0.00 0.00 2.57
2526 2599 2.506231 TGGGTGTTTGTGTTCTGGACTA 59.494 45.455 0.00 0.00 0.00 2.59
2527 2600 1.283613 TGGGTGTTTGTGTTCTGGACT 59.716 47.619 0.00 0.00 0.00 3.85
2528 2601 1.757682 TGGGTGTTTGTGTTCTGGAC 58.242 50.000 0.00 0.00 0.00 4.02
2529 2602 2.305928 CATGGGTGTTTGTGTTCTGGA 58.694 47.619 0.00 0.00 0.00 3.86
2530 2603 2.031120 ACATGGGTGTTTGTGTTCTGG 58.969 47.619 0.00 0.00 34.01 3.86
2531 2604 2.951642 AGACATGGGTGTTTGTGTTCTG 59.048 45.455 0.00 0.00 39.09 3.02
2532 2605 3.214328 GAGACATGGGTGTTTGTGTTCT 58.786 45.455 0.00 0.00 39.09 3.01
2533 2606 2.948979 TGAGACATGGGTGTTTGTGTTC 59.051 45.455 0.00 0.00 39.09 3.18
2534 2607 2.687935 GTGAGACATGGGTGTTTGTGTT 59.312 45.455 0.00 0.00 39.09 3.32
2535 2608 2.297701 GTGAGACATGGGTGTTTGTGT 58.702 47.619 0.00 0.00 39.09 3.72
2536 2609 1.264020 CGTGAGACATGGGTGTTTGTG 59.736 52.381 0.00 0.00 39.09 3.33
2537 2610 1.593196 CGTGAGACATGGGTGTTTGT 58.407 50.000 0.00 0.00 39.09 2.83
2538 2611 0.874390 CCGTGAGACATGGGTGTTTG 59.126 55.000 0.00 0.00 39.09 2.93
2539 2612 3.322514 CCGTGAGACATGGGTGTTT 57.677 52.632 0.00 0.00 39.09 2.83
2545 2618 1.276421 ACTTCTTCCCGTGAGACATGG 59.724 52.381 0.00 0.00 40.02 3.66
2546 2619 2.751166 ACTTCTTCCCGTGAGACATG 57.249 50.000 0.00 0.00 0.00 3.21
2547 2620 3.162666 TGTACTTCTTCCCGTGAGACAT 58.837 45.455 0.00 0.00 0.00 3.06
2548 2621 2.589720 TGTACTTCTTCCCGTGAGACA 58.410 47.619 0.00 0.00 0.00 3.41
2549 2622 3.655276 TTGTACTTCTTCCCGTGAGAC 57.345 47.619 0.00 0.00 0.00 3.36
2550 2623 4.039973 ACATTTGTACTTCTTCCCGTGAGA 59.960 41.667 0.00 0.00 0.00 3.27
2551 2624 4.315803 ACATTTGTACTTCTTCCCGTGAG 58.684 43.478 0.00 0.00 0.00 3.51
2552 2625 4.345859 ACATTTGTACTTCTTCCCGTGA 57.654 40.909 0.00 0.00 0.00 4.35
2553 2626 4.755123 AGAACATTTGTACTTCTTCCCGTG 59.245 41.667 0.00 0.00 0.00 4.94
2554 2627 4.755123 CAGAACATTTGTACTTCTTCCCGT 59.245 41.667 0.00 0.00 0.00 5.28
2555 2628 4.378459 GCAGAACATTTGTACTTCTTCCCG 60.378 45.833 0.00 0.00 0.00 5.14
2556 2629 4.378459 CGCAGAACATTTGTACTTCTTCCC 60.378 45.833 0.00 0.00 0.00 3.97
2557 2630 4.378459 CCGCAGAACATTTGTACTTCTTCC 60.378 45.833 0.00 0.00 0.00 3.46
2558 2631 4.451096 TCCGCAGAACATTTGTACTTCTTC 59.549 41.667 0.00 0.00 0.00 2.87
2559 2632 4.385825 TCCGCAGAACATTTGTACTTCTT 58.614 39.130 0.00 0.00 0.00 2.52
2560 2633 3.997021 CTCCGCAGAACATTTGTACTTCT 59.003 43.478 0.00 0.00 0.00 2.85
2561 2634 3.125316 CCTCCGCAGAACATTTGTACTTC 59.875 47.826 0.00 0.00 0.00 3.01
2562 2635 3.074412 CCTCCGCAGAACATTTGTACTT 58.926 45.455 0.00 0.00 0.00 2.24
2563 2636 2.615493 CCCTCCGCAGAACATTTGTACT 60.615 50.000 0.00 0.00 0.00 2.73
2564 2637 1.737793 CCCTCCGCAGAACATTTGTAC 59.262 52.381 0.00 0.00 0.00 2.90
2565 2638 1.948611 GCCCTCCGCAGAACATTTGTA 60.949 52.381 0.00 0.00 37.47 2.41
2566 2639 1.244019 GCCCTCCGCAGAACATTTGT 61.244 55.000 0.00 0.00 37.47 2.83
2567 2640 1.243342 TGCCCTCCGCAGAACATTTG 61.243 55.000 0.00 0.00 44.64 2.32
2568 2641 1.074775 TGCCCTCCGCAGAACATTT 59.925 52.632 0.00 0.00 44.64 2.32
2569 2642 2.756400 TGCCCTCCGCAGAACATT 59.244 55.556 0.00 0.00 44.64 2.71
2577 2650 2.281484 TTGAGTTGTGCCCTCCGC 60.281 61.111 0.00 0.00 38.31 5.54
2578 2651 0.817634 TTGTTGAGTTGTGCCCTCCG 60.818 55.000 0.00 0.00 0.00 4.63
2579 2652 0.954452 CTTGTTGAGTTGTGCCCTCC 59.046 55.000 0.00 0.00 0.00 4.30
2580 2653 0.312102 GCTTGTTGAGTTGTGCCCTC 59.688 55.000 0.00 0.00 0.00 4.30
2581 2654 1.109323 GGCTTGTTGAGTTGTGCCCT 61.109 55.000 0.00 0.00 34.81 5.19
2582 2655 1.363807 GGCTTGTTGAGTTGTGCCC 59.636 57.895 0.00 0.00 34.81 5.36
2583 2656 1.109323 AGGGCTTGTTGAGTTGTGCC 61.109 55.000 0.00 0.00 39.61 5.01
2584 2657 1.604604 TAGGGCTTGTTGAGTTGTGC 58.395 50.000 0.00 0.00 0.00 4.57
2585 2658 5.957842 TTATTAGGGCTTGTTGAGTTGTG 57.042 39.130 0.00 0.00 0.00 3.33
2586 2659 6.969993 TTTTATTAGGGCTTGTTGAGTTGT 57.030 33.333 0.00 0.00 0.00 3.32
2607 2680 2.047061 GGCCCCTCCTGTTTTCTTTTT 58.953 47.619 0.00 0.00 0.00 1.94
2608 2681 1.717032 GGCCCCTCCTGTTTTCTTTT 58.283 50.000 0.00 0.00 0.00 2.27
2609 2682 0.539669 CGGCCCCTCCTGTTTTCTTT 60.540 55.000 0.00 0.00 0.00 2.52
2610 2683 1.074951 CGGCCCCTCCTGTTTTCTT 59.925 57.895 0.00 0.00 0.00 2.52
2611 2684 2.757077 CGGCCCCTCCTGTTTTCT 59.243 61.111 0.00 0.00 0.00 2.52
2612 2685 2.361230 CCGGCCCCTCCTGTTTTC 60.361 66.667 0.00 0.00 0.00 2.29
2613 2686 2.856988 TCCGGCCCCTCCTGTTTT 60.857 61.111 0.00 0.00 0.00 2.43
2614 2687 3.330720 CTCCGGCCCCTCCTGTTT 61.331 66.667 0.00 0.00 0.00 2.83
2624 2697 4.779733 TCTCTGGTCCCTCCGGCC 62.780 72.222 0.00 0.00 42.13 6.13
2625 2698 3.462678 GTCTCTGGTCCCTCCGGC 61.463 72.222 0.00 0.00 42.13 6.13
2626 2699 1.608717 CTTGTCTCTGGTCCCTCCGG 61.609 65.000 0.00 0.00 43.70 5.14
2627 2700 0.900647 ACTTGTCTCTGGTCCCTCCG 60.901 60.000 0.00 0.00 39.52 4.63
2628 2701 0.899019 GACTTGTCTCTGGTCCCTCC 59.101 60.000 0.00 0.00 0.00 4.30
2629 2702 0.899019 GGACTTGTCTCTGGTCCCTC 59.101 60.000 0.00 0.00 42.45 4.30
2630 2703 0.191064 TGGACTTGTCTCTGGTCCCT 59.809 55.000 8.58 0.00 46.26 4.20
2631 2704 0.610687 CTGGACTTGTCTCTGGTCCC 59.389 60.000 8.58 0.00 46.26 4.46
2632 2705 0.036858 GCTGGACTTGTCTCTGGTCC 60.037 60.000 0.00 0.00 46.80 4.46
2633 2706 0.389166 CGCTGGACTTGTCTCTGGTC 60.389 60.000 0.61 0.00 0.00 4.02
2634 2707 1.668294 CGCTGGACTTGTCTCTGGT 59.332 57.895 0.61 0.00 0.00 4.00
2635 2708 1.739562 GCGCTGGACTTGTCTCTGG 60.740 63.158 0.00 0.00 0.00 3.86
2636 2709 1.739562 GGCGCTGGACTTGTCTCTG 60.740 63.158 7.64 0.00 0.00 3.35
2637 2710 0.612174 TAGGCGCTGGACTTGTCTCT 60.612 55.000 7.64 0.00 30.49 3.10
2638 2711 0.246635 TTAGGCGCTGGACTTGTCTC 59.753 55.000 7.64 0.00 30.49 3.36
2639 2712 0.905357 ATTAGGCGCTGGACTTGTCT 59.095 50.000 7.64 0.00 30.49 3.41
2640 2713 1.291132 GATTAGGCGCTGGACTTGTC 58.709 55.000 7.64 0.00 30.49 3.18
2641 2714 0.613260 TGATTAGGCGCTGGACTTGT 59.387 50.000 7.64 0.00 30.49 3.16
2642 2715 1.293924 CTGATTAGGCGCTGGACTTG 58.706 55.000 7.64 0.00 30.49 3.16
2643 2716 0.179000 CCTGATTAGGCGCTGGACTT 59.821 55.000 7.64 0.00 37.25 3.01
2644 2717 1.826024 CCTGATTAGGCGCTGGACT 59.174 57.895 7.64 0.00 37.25 3.85
2645 2718 4.445699 CCTGATTAGGCGCTGGAC 57.554 61.111 7.64 0.00 37.25 4.02
3019 3092 4.812476 TCCGCTCGATGGCCGTTG 62.812 66.667 5.76 5.76 39.75 4.10
3020 3093 4.514577 CTCCGCTCGATGGCCGTT 62.515 66.667 0.00 0.00 39.75 4.44
3032 3105 4.508128 TTCATCGCCGACCTCCGC 62.508 66.667 0.00 0.00 36.84 5.54
3093 3166 2.072298 GTCTGGTTACTTGCAGCTCTG 58.928 52.381 0.00 0.00 0.00 3.35
3098 3171 3.876914 TCAAACTGTCTGGTTACTTGCAG 59.123 43.478 0.00 0.00 0.00 4.41
3107 3180 2.546795 CGCTCTCTTCAAACTGTCTGGT 60.547 50.000 0.00 0.00 0.00 4.00
3143 4027 2.306805 TGTGATCCAGCACATTCCTCTT 59.693 45.455 0.00 0.00 43.35 2.85
3153 4037 3.273434 GCAATAGACTTGTGATCCAGCA 58.727 45.455 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.