Multiple sequence alignment - TraesCS4A01G382700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G382700 chr4A 100.000 7376 0 0 1 7376 660796818 660789443 0.000000e+00 13622.0
1 TraesCS4A01G382700 chr4A 92.886 1715 84 20 2695 4379 660918137 660919843 0.000000e+00 2457.0
2 TraesCS4A01G382700 chr4A 91.407 1571 79 22 5003 6550 660920288 660921825 0.000000e+00 2102.0
3 TraesCS4A01G382700 chr4A 88.968 1695 127 37 1042 2700 660916347 660918017 0.000000e+00 2039.0
4 TraesCS4A01G382700 chr4A 92.958 781 43 3 6605 7376 660922549 660923326 0.000000e+00 1127.0
5 TraesCS4A01G382700 chr4A 76.747 787 143 25 6601 7359 660743924 660743150 3.200000e-108 403.0
6 TraesCS4A01G382700 chr4A 76.609 808 121 40 6591 7363 660750215 660749441 4.180000e-102 383.0
7 TraesCS4A01G382700 chr4A 95.556 90 4 0 5789 5878 660922333 660922422 2.140000e-30 145.0
8 TraesCS4A01G382700 chr7D 89.349 3840 276 75 2559 6310 46842152 46838358 0.000000e+00 4702.0
9 TraesCS4A01G382700 chr7D 91.978 1633 85 26 4800 6427 46888014 46889605 0.000000e+00 2248.0
10 TraesCS4A01G382700 chr7D 88.900 964 85 20 3827 4775 46886997 46887953 0.000000e+00 1168.0
11 TraesCS4A01G382700 chr7D 88.874 728 35 13 973 1669 46843721 46843009 0.000000e+00 854.0
12 TraesCS4A01G382700 chr7D 86.731 731 65 19 1843 2561 46842890 46842180 0.000000e+00 784.0
13 TraesCS4A01G382700 chr7D 76.172 789 146 28 6598 7363 46803066 46802297 1.940000e-100 377.0
14 TraesCS4A01G382700 chr7D 86.562 320 35 6 6435 6751 46900881 46901195 5.480000e-91 346.0
15 TraesCS4A01G382700 chr7D 78.571 518 59 31 462 943 475893137 475892636 2.010000e-75 294.0
16 TraesCS4A01G382700 chr7D 83.230 322 18 10 1927 2233 46886699 46886999 5.680000e-66 263.0
17 TraesCS4A01G382700 chr7D 85.232 237 15 10 970 1202 46886285 46886505 7.450000e-55 226.0
18 TraesCS4A01G382700 chr7D 86.634 202 25 2 2360 2559 471211096 471210895 9.630000e-54 222.0
19 TraesCS4A01G382700 chr7D 99.010 101 1 0 1516 1616 46886600 46886700 1.630000e-41 182.0
20 TraesCS4A01G382700 chr7D 80.952 105 18 2 5442 5545 104090923 104090820 1.710000e-11 82.4
21 TraesCS4A01G382700 chr7A 93.075 1314 60 10 5003 6310 49048060 49046772 0.000000e+00 1893.0
22 TraesCS4A01G382700 chr7A 91.654 1294 71 19 1828 3098 49051074 49049795 0.000000e+00 1757.0
23 TraesCS4A01G382700 chr7A 86.520 957 68 31 6016 6954 48948318 48947405 0.000000e+00 996.0
24 TraesCS4A01G382700 chr7A 88.259 741 68 14 5813 6550 48949475 48948751 0.000000e+00 869.0
25 TraesCS4A01G382700 chr7A 84.129 838 109 17 3643 4473 49049276 49048456 0.000000e+00 789.0
26 TraesCS4A01G382700 chr7A 90.338 414 33 2 6962 7374 48947116 48946709 3.030000e-148 536.0
27 TraesCS4A01G382700 chr7A 92.982 342 11 6 1345 1674 49051950 49051610 3.090000e-133 486.0
28 TraesCS4A01G382700 chr7A 86.253 371 32 7 3198 3551 49049778 49049410 1.160000e-102 385.0
29 TraesCS4A01G382700 chr7A 76.408 746 117 33 6598 7314 48902466 48901751 1.520000e-91 348.0
30 TraesCS4A01G382700 chr7A 82.834 367 38 12 3196 3551 220542696 220543048 9.300000e-79 305.0
31 TraesCS4A01G382700 chr7A 83.913 230 8 13 973 1184 49052295 49052077 7.550000e-45 193.0
32 TraesCS4A01G382700 chr7A 92.593 81 6 0 1666 1746 49051583 49051503 4.680000e-22 117.0
33 TraesCS4A01G382700 chr7A 85.437 103 11 3 1246 1347 49052078 49051979 3.640000e-18 104.0
34 TraesCS4A01G382700 chr7A 80.189 106 17 3 5442 5545 108236741 108236638 7.940000e-10 76.8
35 TraesCS4A01G382700 chr3B 90.387 905 78 9 1 900 481632728 481631828 0.000000e+00 1181.0
36 TraesCS4A01G382700 chr3B 86.985 922 95 15 1 905 722494115 722493202 0.000000e+00 1014.0
37 TraesCS4A01G382700 chr3B 87.121 528 53 6 2573 3098 670119612 670119098 1.070000e-162 584.0
38 TraesCS4A01G382700 chr3B 82.181 376 51 13 3668 4039 780672785 780673148 7.190000e-80 309.0
39 TraesCS4A01G382700 chr3B 82.825 361 39 10 3199 3551 603629127 603628782 1.200000e-77 302.0
40 TraesCS4A01G382700 chr3B 80.149 403 55 14 3643 4042 670118597 670118217 2.030000e-70 278.0
41 TraesCS4A01G382700 chr2B 90.724 884 70 12 1 879 107392797 107391921 0.000000e+00 1168.0
42 TraesCS4A01G382700 chr2B 89.189 888 67 23 38 905 694934613 694935491 0.000000e+00 1081.0
43 TraesCS4A01G382700 chr2B 80.573 942 125 44 38 943 365231249 365232168 0.000000e+00 673.0
44 TraesCS4A01G382700 chr2B 86.511 556 56 9 2564 3115 132286458 132285918 1.770000e-165 593.0
45 TraesCS4A01G382700 chr6B 89.138 893 75 15 10 887 626805966 626806851 0.000000e+00 1092.0
46 TraesCS4A01G382700 chr6B 73.196 485 96 25 5074 5553 654733904 654733449 2.140000e-30 145.0
47 TraesCS4A01G382700 chr5B 88.814 894 87 13 1 887 644405471 644406358 0.000000e+00 1085.0
48 TraesCS4A01G382700 chr5B 88.248 919 85 16 1 905 550252620 550253529 0.000000e+00 1077.0
49 TraesCS4A01G382700 chr5B 84.298 968 118 26 1 943 711385387 711386345 0.000000e+00 915.0
50 TraesCS4A01G382700 chr5B 87.337 537 51 7 2564 3098 255675699 255676220 3.810000e-167 599.0
51 TraesCS4A01G382700 chr5B 83.740 369 45 10 3196 3551 148499262 148499628 1.190000e-87 335.0
52 TraesCS4A01G382700 chr5B 92.135 89 7 0 3659 3747 148499777 148499865 7.770000e-25 126.0
53 TraesCS4A01G382700 chr4B 84.892 973 112 24 1 952 72844149 72843191 0.000000e+00 950.0
54 TraesCS4A01G382700 chr4B 86.364 528 57 7 2573 3098 412262033 412262547 5.000000e-156 562.0
55 TraesCS4A01G382700 chr4B 84.458 489 56 12 422 905 97945499 97945026 1.450000e-126 464.0
56 TraesCS4A01G382700 chr4B 80.149 403 60 12 3643 4042 412263063 412263448 4.360000e-72 283.0
57 TraesCS4A01G382700 chr3D 87.337 537 50 9 2564 3098 141391558 141391038 3.810000e-167 599.0
58 TraesCS4A01G382700 chr3D 79.672 792 110 26 189 943 570572463 570571686 2.360000e-144 523.0
59 TraesCS4A01G382700 chr3D 84.196 367 46 7 3196 3551 141391024 141390659 5.480000e-91 346.0
60 TraesCS4A01G382700 chr7B 86.406 537 56 8 2564 3098 590956144 590955623 8.300000e-159 571.0
61 TraesCS4A01G382700 chr7B 84.865 370 42 4 3196 3551 408955146 408955515 1.960000e-95 361.0
62 TraesCS4A01G382700 chr7B 84.741 367 45 6 3196 3551 590955609 590955243 2.530000e-94 357.0
63 TraesCS4A01G382700 chr7B 88.158 228 27 0 716 943 4893486 4893713 9.430000e-69 272.0
64 TraesCS4A01G382700 chr7B 85.849 212 29 1 2321 2531 729821738 729821527 2.680000e-54 224.0
65 TraesCS4A01G382700 chr7B 93.258 89 6 0 3659 3747 590955092 590955004 1.670000e-26 132.0
66 TraesCS4A01G382700 chr6D 78.836 756 99 37 209 931 419880648 419881375 3.140000e-123 453.0
67 TraesCS4A01G382700 chr6D 85.167 209 26 4 2323 2528 239527613 239527819 7.500000e-50 209.0
68 TraesCS4A01G382700 chr6D 72.676 527 105 30 5074 5594 433477036 433476543 9.980000e-29 139.0
69 TraesCS4A01G382700 chrUn 76.553 789 133 35 6604 7363 49213941 49213176 1.160000e-102 385.0
70 TraesCS4A01G382700 chrUn 76.553 789 133 35 6604 7363 273544333 273543568 1.160000e-102 385.0
71 TraesCS4A01G382700 chr1B 82.574 373 54 8 3668 4039 16780994 16780632 1.190000e-82 318.0
72 TraesCS4A01G382700 chr6A 80.685 321 35 13 3243 3551 145740205 145739900 2.680000e-54 224.0
73 TraesCS4A01G382700 chr6A 72.802 489 94 31 5074 5553 579438352 579437894 6.010000e-26 130.0
74 TraesCS4A01G382700 chr5A 85.981 214 25 5 2321 2531 608810442 608810653 2.680000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G382700 chr4A 660789443 660796818 7375 True 13622.000000 13622 100.000000 1 7376 1 chr4A.!!$R3 7375
1 TraesCS4A01G382700 chr4A 660916347 660923326 6979 False 1574.000000 2457 92.355000 1042 7376 5 chr4A.!!$F1 6334
2 TraesCS4A01G382700 chr4A 660743150 660743924 774 True 403.000000 403 76.747000 6601 7359 1 chr4A.!!$R1 758
3 TraesCS4A01G382700 chr4A 660749441 660750215 774 True 383.000000 383 76.609000 6591 7363 1 chr4A.!!$R2 772
4 TraesCS4A01G382700 chr7D 46838358 46843721 5363 True 2113.333333 4702 88.318000 973 6310 3 chr7D.!!$R5 5337
5 TraesCS4A01G382700 chr7D 46886285 46889605 3320 False 817.400000 2248 89.670000 970 6427 5 chr7D.!!$F2 5457
6 TraesCS4A01G382700 chr7D 46802297 46803066 769 True 377.000000 377 76.172000 6598 7363 1 chr7D.!!$R1 765
7 TraesCS4A01G382700 chr7D 475892636 475893137 501 True 294.000000 294 78.571000 462 943 1 chr7D.!!$R4 481
8 TraesCS4A01G382700 chr7A 48946709 48949475 2766 True 800.333333 996 88.372333 5813 7374 3 chr7A.!!$R3 1561
9 TraesCS4A01G382700 chr7A 49046772 49052295 5523 True 715.500000 1893 88.754500 973 6310 8 chr7A.!!$R4 5337
10 TraesCS4A01G382700 chr7A 48901751 48902466 715 True 348.000000 348 76.408000 6598 7314 1 chr7A.!!$R1 716
11 TraesCS4A01G382700 chr3B 481631828 481632728 900 True 1181.000000 1181 90.387000 1 900 1 chr3B.!!$R1 899
12 TraesCS4A01G382700 chr3B 722493202 722494115 913 True 1014.000000 1014 86.985000 1 905 1 chr3B.!!$R3 904
13 TraesCS4A01G382700 chr3B 670118217 670119612 1395 True 431.000000 584 83.635000 2573 4042 2 chr3B.!!$R4 1469
14 TraesCS4A01G382700 chr2B 107391921 107392797 876 True 1168.000000 1168 90.724000 1 879 1 chr2B.!!$R1 878
15 TraesCS4A01G382700 chr2B 694934613 694935491 878 False 1081.000000 1081 89.189000 38 905 1 chr2B.!!$F2 867
16 TraesCS4A01G382700 chr2B 365231249 365232168 919 False 673.000000 673 80.573000 38 943 1 chr2B.!!$F1 905
17 TraesCS4A01G382700 chr2B 132285918 132286458 540 True 593.000000 593 86.511000 2564 3115 1 chr2B.!!$R2 551
18 TraesCS4A01G382700 chr6B 626805966 626806851 885 False 1092.000000 1092 89.138000 10 887 1 chr6B.!!$F1 877
19 TraesCS4A01G382700 chr5B 644405471 644406358 887 False 1085.000000 1085 88.814000 1 887 1 chr5B.!!$F3 886
20 TraesCS4A01G382700 chr5B 550252620 550253529 909 False 1077.000000 1077 88.248000 1 905 1 chr5B.!!$F2 904
21 TraesCS4A01G382700 chr5B 711385387 711386345 958 False 915.000000 915 84.298000 1 943 1 chr5B.!!$F4 942
22 TraesCS4A01G382700 chr5B 255675699 255676220 521 False 599.000000 599 87.337000 2564 3098 1 chr5B.!!$F1 534
23 TraesCS4A01G382700 chr5B 148499262 148499865 603 False 230.500000 335 87.937500 3196 3747 2 chr5B.!!$F5 551
24 TraesCS4A01G382700 chr4B 72843191 72844149 958 True 950.000000 950 84.892000 1 952 1 chr4B.!!$R1 951
25 TraesCS4A01G382700 chr4B 412262033 412263448 1415 False 422.500000 562 83.256500 2573 4042 2 chr4B.!!$F1 1469
26 TraesCS4A01G382700 chr3D 570571686 570572463 777 True 523.000000 523 79.672000 189 943 1 chr3D.!!$R1 754
27 TraesCS4A01G382700 chr3D 141390659 141391558 899 True 472.500000 599 85.766500 2564 3551 2 chr3D.!!$R2 987
28 TraesCS4A01G382700 chr7B 590955004 590956144 1140 True 353.333333 571 88.135000 2564 3747 3 chr7B.!!$R2 1183
29 TraesCS4A01G382700 chr6D 419880648 419881375 727 False 453.000000 453 78.836000 209 931 1 chr6D.!!$F2 722
30 TraesCS4A01G382700 chrUn 49213176 49213941 765 True 385.000000 385 76.553000 6604 7363 1 chrUn.!!$R1 759
31 TraesCS4A01G382700 chrUn 273543568 273544333 765 True 385.000000 385 76.553000 6604 7363 1 chrUn.!!$R2 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 1059 0.034756 TTAGATGGTGTGCGTGCACT 59.965 50.000 23.86 5.39 46.30 4.40 F
929 1060 0.034756 TAGATGGTGTGCGTGCACTT 59.965 50.000 23.86 8.02 46.30 3.16 F
1116 1264 0.407528 TCTCCTGCTGACTCCTCACT 59.592 55.000 0.00 0.00 0.00 3.41 F
1118 1266 0.613292 TCCTGCTGACTCCTCACTCC 60.613 60.000 0.00 0.00 0.00 3.85 F
1119 1267 0.614415 CCTGCTGACTCCTCACTCCT 60.614 60.000 0.00 0.00 0.00 3.69 F
2911 3757 0.921347 GCTTCTGTACCGCATACGTG 59.079 55.000 0.00 0.00 36.47 4.49 F
3387 4314 0.973632 ACGCTGACACAACCCTGATA 59.026 50.000 0.00 0.00 0.00 2.15 F
3773 4775 0.598680 AGCTTCACGAGTGTGCTCAC 60.599 55.000 10.92 10.92 46.01 3.51 F
4067 5071 0.610232 AAGCAACAGAGGGTGATGGC 60.610 55.000 0.00 0.00 29.63 4.40 F
4372 5382 1.128692 GCTCATTACACCAAGCGTGAC 59.871 52.381 0.00 0.00 46.20 3.67 F
6002 7098 0.033208 GCCTCATCCCCAACCATTCA 60.033 55.000 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2922 0.112995 TCCTTGCTTGCCATTCCAGT 59.887 50.000 0.00 0.00 0.00 4.00 R
2902 3748 1.135803 CCCTTTGAAACCACGTATGCG 60.136 52.381 0.19 0.19 44.93 4.73 R
2911 3757 2.167487 TGACAGTTTGCCCTTTGAAACC 59.833 45.455 0.00 0.00 33.34 3.27 R
2985 3831 4.062991 GCTAGGAGAAGAAACGGTTGAAA 58.937 43.478 0.00 0.00 0.00 2.69 R
3037 3883 5.633830 ACCAAATGCAGACTTGAGTATTG 57.366 39.130 7.37 0.00 0.00 1.90 R
3773 4775 1.080705 GGAGTCGACCGGTTCAGTG 60.081 63.158 9.42 0.00 0.00 3.66 R
5273 6366 1.306997 ACGGTGGATGATGGGGTCT 60.307 57.895 0.00 0.00 0.00 3.85 R
5603 6696 0.539669 TCTCAGCGAAGGAGTCACCA 60.540 55.000 0.00 0.00 42.04 4.17 R
5915 7011 1.037579 TCACCCATGTCTCGATCGCT 61.038 55.000 11.09 0.00 0.00 4.93 R
6348 7454 1.470098 GGTGAGGAATCACATGCACAC 59.530 52.381 10.29 0.00 42.07 3.82 R
7106 9802 1.251251 GTGACCAATGGCTTGAAGCT 58.749 50.000 17.59 0.00 41.99 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 41 4.336889 CCAGAACATGGTATATGGACGT 57.663 45.455 3.52 0.00 44.91 4.34
62 67 1.644786 GGGCGCACATGTACCTCAAC 61.645 60.000 10.83 0.00 0.00 3.18
107 114 1.540146 GGCCATGACCAACAAAACACC 60.540 52.381 0.00 0.00 0.00 4.16
779 909 0.249398 GTCGCTTACATGTGGGTCCT 59.751 55.000 9.11 0.00 0.00 3.85
908 1039 4.404654 GCTGGCCGCTCGTTTTGG 62.405 66.667 11.61 0.00 35.14 3.28
910 1041 2.517402 TGGCCGCTCGTTTTGGTT 60.517 55.556 0.00 0.00 0.00 3.67
911 1042 1.227883 TGGCCGCTCGTTTTGGTTA 60.228 52.632 0.00 0.00 0.00 2.85
912 1043 1.231958 TGGCCGCTCGTTTTGGTTAG 61.232 55.000 0.00 0.00 0.00 2.34
913 1044 0.952010 GGCCGCTCGTTTTGGTTAGA 60.952 55.000 0.00 0.00 0.00 2.10
914 1045 1.084289 GCCGCTCGTTTTGGTTAGAT 58.916 50.000 0.00 0.00 0.00 1.98
915 1046 1.202031 GCCGCTCGTTTTGGTTAGATG 60.202 52.381 0.00 0.00 0.00 2.90
916 1047 1.396996 CCGCTCGTTTTGGTTAGATGG 59.603 52.381 0.00 0.00 0.00 3.51
917 1048 2.073816 CGCTCGTTTTGGTTAGATGGT 58.926 47.619 0.00 0.00 0.00 3.55
918 1049 2.159707 CGCTCGTTTTGGTTAGATGGTG 60.160 50.000 0.00 0.00 0.00 4.17
919 1050 2.812011 GCTCGTTTTGGTTAGATGGTGT 59.188 45.455 0.00 0.00 0.00 4.16
920 1051 3.364964 GCTCGTTTTGGTTAGATGGTGTG 60.365 47.826 0.00 0.00 0.00 3.82
921 1052 2.550606 TCGTTTTGGTTAGATGGTGTGC 59.449 45.455 0.00 0.00 0.00 4.57
922 1053 2.664424 CGTTTTGGTTAGATGGTGTGCG 60.664 50.000 0.00 0.00 0.00 5.34
923 1054 2.264005 TTTGGTTAGATGGTGTGCGT 57.736 45.000 0.00 0.00 0.00 5.24
924 1055 1.518325 TTGGTTAGATGGTGTGCGTG 58.482 50.000 0.00 0.00 0.00 5.34
925 1056 0.953471 TGGTTAGATGGTGTGCGTGC 60.953 55.000 0.00 0.00 0.00 5.34
926 1057 0.953471 GGTTAGATGGTGTGCGTGCA 60.953 55.000 0.00 0.00 0.00 4.57
927 1058 0.165944 GTTAGATGGTGTGCGTGCAC 59.834 55.000 17.72 17.72 46.33 4.57
928 1059 0.034756 TTAGATGGTGTGCGTGCACT 59.965 50.000 23.86 5.39 46.30 4.40
929 1060 0.034756 TAGATGGTGTGCGTGCACTT 59.965 50.000 23.86 8.02 46.30 3.16
930 1061 0.819259 AGATGGTGTGCGTGCACTTT 60.819 50.000 23.86 7.69 46.30 2.66
931 1062 0.661187 GATGGTGTGCGTGCACTTTG 60.661 55.000 23.86 0.00 46.30 2.77
932 1063 1.100463 ATGGTGTGCGTGCACTTTGA 61.100 50.000 23.86 7.59 46.30 2.69
933 1064 1.308783 TGGTGTGCGTGCACTTTGAA 61.309 50.000 23.86 2.30 46.30 2.69
934 1065 0.592247 GGTGTGCGTGCACTTTGAAG 60.592 55.000 23.86 0.00 46.30 3.02
935 1066 0.592247 GTGTGCGTGCACTTTGAAGG 60.592 55.000 23.86 0.00 46.30 3.46
936 1067 0.746204 TGTGCGTGCACTTTGAAGGA 60.746 50.000 23.86 0.00 46.30 3.36
937 1068 0.593128 GTGCGTGCACTTTGAAGGAT 59.407 50.000 17.32 0.00 43.12 3.24
938 1069 1.001378 GTGCGTGCACTTTGAAGGATT 60.001 47.619 17.32 0.00 43.12 3.01
939 1070 1.680735 TGCGTGCACTTTGAAGGATTT 59.319 42.857 16.19 0.00 0.00 2.17
940 1071 2.881513 TGCGTGCACTTTGAAGGATTTA 59.118 40.909 16.19 0.00 0.00 1.40
941 1072 3.058293 TGCGTGCACTTTGAAGGATTTAG 60.058 43.478 16.19 0.00 0.00 1.85
942 1073 3.670627 GCGTGCACTTTGAAGGATTTAGG 60.671 47.826 16.19 0.00 0.00 2.69
943 1074 3.119849 CGTGCACTTTGAAGGATTTAGGG 60.120 47.826 16.19 0.00 0.00 3.53
944 1075 3.826729 GTGCACTTTGAAGGATTTAGGGT 59.173 43.478 10.32 0.00 0.00 4.34
945 1076 3.826157 TGCACTTTGAAGGATTTAGGGTG 59.174 43.478 0.00 0.00 0.00 4.61
946 1077 4.079253 GCACTTTGAAGGATTTAGGGTGA 58.921 43.478 0.00 0.00 0.00 4.02
947 1078 4.522789 GCACTTTGAAGGATTTAGGGTGAA 59.477 41.667 0.00 0.00 0.00 3.18
948 1079 5.185828 GCACTTTGAAGGATTTAGGGTGAAT 59.814 40.000 0.00 0.00 0.00 2.57
949 1080 6.625960 GCACTTTGAAGGATTTAGGGTGAATC 60.626 42.308 0.00 0.00 33.71 2.52
950 1081 6.660949 CACTTTGAAGGATTTAGGGTGAATCT 59.339 38.462 0.00 0.00 34.65 2.40
951 1082 7.177392 CACTTTGAAGGATTTAGGGTGAATCTT 59.823 37.037 0.00 0.00 34.65 2.40
952 1083 8.390921 ACTTTGAAGGATTTAGGGTGAATCTTA 58.609 33.333 0.00 0.00 34.65 2.10
953 1084 9.413734 CTTTGAAGGATTTAGGGTGAATCTTAT 57.586 33.333 0.00 0.00 34.65 1.73
956 1087 9.847224 TGAAGGATTTAGGGTGAATCTTATAAC 57.153 33.333 0.00 0.00 34.65 1.89
957 1088 9.286170 GAAGGATTTAGGGTGAATCTTATAACC 57.714 37.037 0.00 0.00 34.65 2.85
958 1089 8.344939 AGGATTTAGGGTGAATCTTATAACCA 57.655 34.615 0.00 0.00 34.65 3.67
959 1090 8.787818 AGGATTTAGGGTGAATCTTATAACCAA 58.212 33.333 0.00 0.00 34.65 3.67
960 1091 9.416284 GGATTTAGGGTGAATCTTATAACCAAA 57.584 33.333 0.00 0.00 34.65 3.28
963 1094 9.457436 TTTAGGGTGAATCTTATAACCAAAGAC 57.543 33.333 0.00 0.00 35.87 3.01
964 1095 7.027874 AGGGTGAATCTTATAACCAAAGACA 57.972 36.000 0.00 0.00 35.87 3.41
965 1096 6.884836 AGGGTGAATCTTATAACCAAAGACAC 59.115 38.462 0.00 0.00 35.87 3.67
966 1097 6.657541 GGGTGAATCTTATAACCAAAGACACA 59.342 38.462 0.00 1.53 35.87 3.72
967 1098 7.361799 GGGTGAATCTTATAACCAAAGACACAC 60.362 40.741 0.00 11.97 39.23 3.82
968 1099 7.361799 GGTGAATCTTATAACCAAAGACACACC 60.362 40.741 18.40 18.40 44.86 4.16
971 1102 5.556915 TCTTATAACCAAAGACACACCCAG 58.443 41.667 0.00 0.00 0.00 4.45
974 1105 0.916086 ACCAAAGACACACCCAGACA 59.084 50.000 0.00 0.00 0.00 3.41
987 1118 0.478507 CCAGACACCCTCCAACCTTT 59.521 55.000 0.00 0.00 0.00 3.11
1006 1137 6.569780 ACCTTTCCCGTTGCAATAATTTATC 58.430 36.000 0.59 0.00 0.00 1.75
1066 1210 1.045350 CATCTCGGCTCCCCTCTCAA 61.045 60.000 0.00 0.00 0.00 3.02
1081 1229 2.125350 CAAGCCGAGCTCAGTCCC 60.125 66.667 15.40 0.00 38.25 4.46
1114 1262 0.962855 CGTCTCCTGCTGACTCCTCA 60.963 60.000 0.00 0.00 32.70 3.86
1115 1263 0.530288 GTCTCCTGCTGACTCCTCAC 59.470 60.000 0.00 0.00 0.00 3.51
1116 1264 0.407528 TCTCCTGCTGACTCCTCACT 59.592 55.000 0.00 0.00 0.00 3.41
1118 1266 0.613292 TCCTGCTGACTCCTCACTCC 60.613 60.000 0.00 0.00 0.00 3.85
1119 1267 0.614415 CCTGCTGACTCCTCACTCCT 60.614 60.000 0.00 0.00 0.00 3.69
1133 1281 3.024356 TCCTCCTCCTCCTCGCCT 61.024 66.667 0.00 0.00 0.00 5.52
1192 1340 2.775032 TTCTCCAAGGTACGCACGCC 62.775 60.000 0.00 0.00 0.00 5.68
1275 1423 1.341606 CGCGAAGTTCTTGACTCCTC 58.658 55.000 0.00 0.00 37.72 3.71
1280 1428 3.612955 CGAAGTTCTTGACTCCTCTGTCC 60.613 52.174 0.56 0.00 37.72 4.02
1285 1433 1.552792 CTTGACTCCTCTGTCCCCTTC 59.447 57.143 0.00 0.00 36.21 3.46
1290 1438 1.684049 CCTCTGTCCCCTTCTCGCT 60.684 63.158 0.00 0.00 0.00 4.93
1367 1547 4.699257 AGGAGCTGAATGTTTCTGATGTTC 59.301 41.667 0.00 0.00 0.00 3.18
1380 1565 3.009723 CTGATGTTCGTTATTGGGCTGT 58.990 45.455 0.00 0.00 0.00 4.40
1676 1902 7.360113 AGTCTGTCTTCTCTCTCTTTCTTTT 57.640 36.000 0.00 0.00 0.00 2.27
1701 1927 2.690497 TCGTTTCATCTCTGCCTCCTAG 59.310 50.000 0.00 0.00 0.00 3.02
1746 1972 6.426328 ACAGTTCTTGATGTCTGAACAAGATC 59.574 38.462 17.35 16.40 45.62 2.75
1747 1973 6.649973 CAGTTCTTGATGTCTGAACAAGATCT 59.350 38.462 17.35 17.65 45.62 2.75
1748 1974 7.172875 CAGTTCTTGATGTCTGAACAAGATCTT 59.827 37.037 19.44 0.88 45.62 2.40
1749 1975 7.718753 AGTTCTTGATGTCTGAACAAGATCTTT 59.281 33.333 4.86 0.00 45.62 2.52
1750 1976 8.348507 GTTCTTGATGTCTGAACAAGATCTTTT 58.651 33.333 4.86 4.01 45.62 2.27
1751 1977 8.455903 TCTTGATGTCTGAACAAGATCTTTTT 57.544 30.769 4.86 5.80 42.91 1.94
1752 1978 8.347771 TCTTGATGTCTGAACAAGATCTTTTTG 58.652 33.333 11.51 1.40 42.91 2.44
1779 2358 6.307800 CAGTTTTAATACGCCATGAACCTTTG 59.692 38.462 0.00 0.00 0.00 2.77
1792 2415 5.499004 TGAACCTTTGGCTACTATGACTT 57.501 39.130 0.00 0.00 0.00 3.01
1797 2429 7.253905 ACCTTTGGCTACTATGACTTCTAAA 57.746 36.000 0.00 0.00 0.00 1.85
1802 2436 9.515226 TTTGGCTACTATGACTTCTAAAACAAT 57.485 29.630 0.00 0.00 0.00 2.71
1881 2515 5.420739 GCCAATTGGATAGGTTAGTTTTGGA 59.579 40.000 29.02 0.00 37.39 3.53
1883 2517 7.286775 GCCAATTGGATAGGTTAGTTTTGGATA 59.713 37.037 29.02 0.00 37.39 2.59
1884 2518 8.850156 CCAATTGGATAGGTTAGTTTTGGATAG 58.150 37.037 20.50 0.00 37.39 2.08
1905 2550 5.693769 AGGGCTAGCTTCATACTGTTAAA 57.306 39.130 15.72 0.00 0.00 1.52
1907 2552 6.058183 AGGGCTAGCTTCATACTGTTAAATG 58.942 40.000 15.72 0.00 0.00 2.32
1908 2553 5.823045 GGGCTAGCTTCATACTGTTAAATGT 59.177 40.000 15.72 0.00 0.00 2.71
1909 2554 6.318900 GGGCTAGCTTCATACTGTTAAATGTT 59.681 38.462 15.72 0.00 0.00 2.71
1910 2555 7.497909 GGGCTAGCTTCATACTGTTAAATGTTA 59.502 37.037 15.72 0.00 0.00 2.41
1952 2599 4.874396 TCTTGATGTAGCAGCATCTTGAAG 59.126 41.667 17.43 13.54 44.02 3.02
1977 2624 8.567948 AGAAATTTTATGGTTACAGTGTCACAG 58.432 33.333 9.69 0.00 0.00 3.66
1989 2636 1.623811 GTGTCACAGGGTCACACCTAT 59.376 52.381 0.00 0.00 39.34 2.57
2073 2731 9.260002 GGTTGATGAATATGAACTTTTGTTGTT 57.740 29.630 0.00 0.00 43.66 2.83
2151 2824 5.939883 CCAATTATTCAGAACACTGACCTGA 59.060 40.000 0.00 0.00 39.88 3.86
2152 2825 6.128172 CCAATTATTCAGAACACTGACCTGAC 60.128 42.308 0.00 0.00 39.88 3.51
2153 2826 2.910688 TTCAGAACACTGACCTGACC 57.089 50.000 0.00 0.00 39.88 4.02
2154 2827 2.088104 TCAGAACACTGACCTGACCT 57.912 50.000 0.00 0.00 36.00 3.85
2234 2914 2.203015 ACGTGGCATCGGCATACC 60.203 61.111 12.66 0.00 43.71 2.73
2418 3101 4.713553 TGTTTGATCAACAGGTAGAAGCA 58.286 39.130 7.89 0.00 40.71 3.91
2642 3358 6.293845 GCATTTGGTAGGATGATCATTGTCTC 60.294 42.308 10.14 0.00 0.00 3.36
2752 3594 9.852091 GCAGAGAATTTAAGATGAACAATTCTT 57.148 29.630 7.28 0.00 43.09 2.52
2902 3748 2.436417 TGCATTCCAAGCTTCTGTACC 58.564 47.619 0.00 0.00 0.00 3.34
2911 3757 0.921347 GCTTCTGTACCGCATACGTG 59.079 55.000 0.00 0.00 36.47 4.49
2984 3830 3.871594 CGAAACACCCAAGACCATATCTC 59.128 47.826 0.00 0.00 36.27 2.75
2985 3831 4.383118 CGAAACACCCAAGACCATATCTCT 60.383 45.833 0.00 0.00 36.27 3.10
3060 3906 5.123820 GCAATACTCAAGTCTGCATTTGGTA 59.876 40.000 10.64 0.00 37.12 3.25
3174 4047 4.283467 TCAGCAGCTTAACCTCAGTAGAAA 59.717 41.667 0.00 0.00 0.00 2.52
3210 4124 8.731275 TCAGGAACATAAATGTATAAGTGGTG 57.269 34.615 0.00 0.00 40.80 4.17
3284 4198 2.579207 TTATTCCGCCAGTCTTCTCG 57.421 50.000 0.00 0.00 0.00 4.04
3369 4296 1.537135 GGCAGCGAGATCTCTTACCAC 60.537 57.143 20.26 5.19 0.00 4.16
3387 4314 0.973632 ACGCTGACACAACCCTGATA 59.026 50.000 0.00 0.00 0.00 2.15
3390 4317 1.732259 GCTGACACAACCCTGATAACG 59.268 52.381 0.00 0.00 0.00 3.18
3399 4326 5.123820 CACAACCCTGATAACGAATTCACAT 59.876 40.000 6.22 0.00 0.00 3.21
3474 4404 4.020543 ACAAGAGCTTCCGAAGAGATAGT 58.979 43.478 12.54 1.81 0.00 2.12
3528 4458 5.812127 AGTTTCAGAAATTGCAACAAACCTC 59.188 36.000 0.00 0.00 35.68 3.85
3558 4488 7.451731 TTCTCATGACCAGGTAGGAATTTAT 57.548 36.000 0.00 0.00 41.22 1.40
3559 4489 8.561536 TTCTCATGACCAGGTAGGAATTTATA 57.438 34.615 0.00 0.00 41.22 0.98
3652 4654 4.320023 ACGCACACATCCAAAGTAACATA 58.680 39.130 0.00 0.00 0.00 2.29
3773 4775 0.598680 AGCTTCACGAGTGTGCTCAC 60.599 55.000 10.92 10.92 46.01 3.51
3919 4923 2.887568 CATCCAGCGTGTCGAGCC 60.888 66.667 0.00 0.00 34.64 4.70
3941 4945 4.494855 CCCGAAATCAAGCTTCGAGAAATC 60.495 45.833 6.33 0.00 46.73 2.17
4033 5037 7.412020 CGAAAGAGAAGCTCAACCTATACAAAC 60.412 40.741 0.00 0.00 32.06 2.93
4067 5071 0.610232 AAGCAACAGAGGGTGATGGC 60.610 55.000 0.00 0.00 29.63 4.40
4243 5247 6.256757 GTCTACAAGGCTAAGTTTCAGCATAG 59.743 42.308 0.29 0.00 40.95 2.23
4328 5332 6.013466 AGGAGGTACCGTATTTACTTGGAAAA 60.013 38.462 6.18 0.00 44.74 2.29
4331 5335 6.997476 AGGTACCGTATTTACTTGGAAAACAA 59.003 34.615 6.18 0.00 37.55 2.83
4333 5337 7.804600 GGTACCGTATTTACTTGGAAAACAAAG 59.195 37.037 0.00 0.00 38.91 2.77
4336 5340 7.916977 ACCGTATTTACTTGGAAAACAAAGAAC 59.083 33.333 0.00 0.00 38.91 3.01
4338 5342 9.166126 CGTATTTACTTGGAAAACAAAGAACTC 57.834 33.333 0.00 0.00 38.91 3.01
4367 5375 1.457346 AGCTGCTCATTACACCAAGC 58.543 50.000 0.00 0.00 35.31 4.01
4372 5382 1.128692 GCTCATTACACCAAGCGTGAC 59.871 52.381 0.00 0.00 46.20 3.67
4385 5395 4.290155 CAAGCGTGACTTTTAGCAAACAT 58.710 39.130 0.00 0.00 36.04 2.71
4390 5400 7.812648 AGCGTGACTTTTAGCAAACATAATTA 58.187 30.769 0.00 0.00 0.00 1.40
4414 5424 7.631717 AGGAAACTTTAATACATTCCTGAGC 57.368 36.000 4.66 0.00 46.10 4.26
4444 5454 8.773033 ATTTAGCCATTACTTTTGGATGATCT 57.227 30.769 0.00 0.00 36.26 2.75
4518 5544 6.605119 AGGGCTAATAGTATGAACTTTGCAT 58.395 36.000 0.00 0.00 37.15 3.96
4520 5546 6.263168 GGGCTAATAGTATGAACTTTGCATGT 59.737 38.462 0.00 0.00 37.15 3.21
4521 5547 7.355778 GGCTAATAGTATGAACTTTGCATGTC 58.644 38.462 0.00 0.00 37.15 3.06
4522 5548 7.012327 GGCTAATAGTATGAACTTTGCATGTCA 59.988 37.037 0.00 0.00 37.15 3.58
4523 5549 7.852945 GCTAATAGTATGAACTTTGCATGTCAC 59.147 37.037 0.00 0.00 37.15 3.67
4524 5550 6.683974 ATAGTATGAACTTTGCATGTCACC 57.316 37.500 0.00 0.00 37.15 4.02
4533 5559 1.452110 TGCATGTCACCGAAATGAGG 58.548 50.000 0.00 0.00 29.25 3.86
4539 5565 4.610605 TGTCACCGAAATGAGGAAGTAA 57.389 40.909 0.00 0.00 0.00 2.24
4549 5577 8.840321 CCGAAATGAGGAAGTAAATCATATTGT 58.160 33.333 0.00 0.00 33.40 2.71
4616 5654 7.123397 TGCTACTCATATTTCTATCTGGCTAGG 59.877 40.741 0.00 0.00 0.00 3.02
4624 5662 3.910989 TCTATCTGGCTAGGCTACACAA 58.089 45.455 18.18 0.00 0.00 3.33
4625 5663 4.483950 TCTATCTGGCTAGGCTACACAAT 58.516 43.478 18.18 4.71 0.00 2.71
4626 5664 2.988010 TCTGGCTAGGCTACACAATG 57.012 50.000 18.18 0.00 0.00 2.82
4628 5666 2.432146 TCTGGCTAGGCTACACAATGAG 59.568 50.000 18.18 3.06 0.00 2.90
4635 5673 1.683011 GGCTACACAATGAGGCCATGT 60.683 52.381 5.01 0.95 37.99 3.21
4648 5686 6.662865 TGAGGCCATGTTTCTTATTTTCAA 57.337 33.333 5.01 0.00 0.00 2.69
4654 5692 8.949177 GGCCATGTTTCTTATTTTCAATTTGAT 58.051 29.630 0.00 0.00 0.00 2.57
4745 5784 9.877178 CTTAGAAGGTAAGAGAAGCATCTTAAA 57.123 33.333 7.41 0.00 42.03 1.52
4747 5786 8.785329 AGAAGGTAAGAGAAGCATCTTAAAAG 57.215 34.615 7.41 0.00 42.03 2.27
4775 5814 8.703336 GCTCAAGAAAATTAAATCCAAACAGAC 58.297 33.333 0.00 0.00 0.00 3.51
4780 5819 9.918630 AGAAAATTAAATCCAAACAGACATCAG 57.081 29.630 0.00 0.00 0.00 2.90
4782 5821 9.918630 AAAATTAAATCCAAACAGACATCAGAG 57.081 29.630 0.00 0.00 0.00 3.35
4786 5825 5.954296 ATCCAAACAGACATCAGAGTTTG 57.046 39.130 9.27 9.27 46.23 2.93
4789 5828 5.505173 CAAACAGACATCAGAGTTTGGTT 57.495 39.130 8.55 0.00 44.17 3.67
4791 5830 7.026631 CAAACAGACATCAGAGTTTGGTTAA 57.973 36.000 8.55 0.00 44.17 2.01
4795 5834 5.049405 CAGACATCAGAGTTTGGTTAACACC 60.049 44.000 8.10 0.00 44.56 4.16
4814 5889 4.777896 ACACCAGACATACACCTATGACTT 59.222 41.667 0.00 0.00 34.38 3.01
4815 5890 5.111989 CACCAGACATACACCTATGACTTG 58.888 45.833 0.00 0.00 34.38 3.16
4821 5896 8.017373 CAGACATACACCTATGACTTGTTTTTG 58.983 37.037 0.00 0.00 34.38 2.44
4828 5903 7.330700 ACACCTATGACTTGTTTTTGTTTGTTG 59.669 33.333 0.00 0.00 0.00 3.33
4833 5908 7.357951 TGACTTGTTTTTGTTTGTTGAATCC 57.642 32.000 0.00 0.00 0.00 3.01
4838 5913 9.455847 CTTGTTTTTGTTTGTTGAATCCAAAAA 57.544 25.926 0.00 0.00 40.61 1.94
4842 5917 7.969536 TTTGTTTGTTGAATCCAAAAACAGA 57.030 28.000 3.52 0.00 40.24 3.41
4843 5918 7.969536 TTGTTTGTTGAATCCAAAAACAGAA 57.030 28.000 3.52 0.00 40.24 3.02
4844 5919 7.357951 TGTTTGTTGAATCCAAAAACAGAAC 57.642 32.000 0.00 2.36 37.77 3.01
4845 5920 6.931281 TGTTTGTTGAATCCAAAAACAGAACA 59.069 30.769 0.00 4.30 37.77 3.18
4846 5921 7.117523 TGTTTGTTGAATCCAAAAACAGAACAG 59.882 33.333 0.00 0.00 37.77 3.16
4847 5922 6.522625 TGTTGAATCCAAAAACAGAACAGA 57.477 33.333 0.00 0.00 33.49 3.41
4848 5923 6.929625 TGTTGAATCCAAAAACAGAACAGAA 58.070 32.000 0.00 0.00 33.49 3.02
4849 5924 7.555087 TGTTGAATCCAAAAACAGAACAGAAT 58.445 30.769 0.00 0.00 33.49 2.40
4850 5925 8.040132 TGTTGAATCCAAAAACAGAACAGAATT 58.960 29.630 0.00 0.00 33.49 2.17
4851 5926 8.542953 GTTGAATCCAAAAACAGAACAGAATTC 58.457 33.333 0.00 0.00 33.49 2.17
5000 6085 6.872920 TGTCACTGCAACATGTATCTGTATA 58.127 36.000 0.00 0.00 0.00 1.47
5042 6135 7.440556 GCAAGTGCTCATCTCATCTTAAATCTA 59.559 37.037 0.00 0.00 38.21 1.98
5066 6159 1.976132 GCATGCAGCTGGAGGTCCTA 61.976 60.000 21.05 0.00 41.15 2.94
5093 6186 3.390521 CGGCACCCTCACCTGCTA 61.391 66.667 0.00 0.00 33.63 3.49
5149 6242 3.014623 TGGTGTACGAGTACATGGAGAG 58.985 50.000 17.64 0.00 46.36 3.20
5507 6600 1.174078 TGTCGGCCAAGTCAGACGTA 61.174 55.000 2.24 0.00 34.58 3.57
5603 6696 2.932234 CGCACTGGAGGAAGACGGT 61.932 63.158 0.00 0.00 0.00 4.83
5618 6711 2.932234 CGGTGGTGACTCCTTCGCT 61.932 63.158 0.00 0.00 41.93 4.93
5632 6725 1.877576 TTCGCTGAGATGCTGGACGT 61.878 55.000 0.00 0.00 0.00 4.34
5747 6840 3.785859 GAGCACATCCTCCCGGCA 61.786 66.667 0.00 0.00 0.00 5.69
5915 7011 0.887933 GGTACACCTACGACCGGAAA 59.112 55.000 9.46 0.00 0.00 3.13
5974 7070 0.978146 ATGACTAACCTCCGGCTGCT 60.978 55.000 0.00 0.00 0.00 4.24
5999 7095 0.625683 AGAGCCTCATCCCCAACCAT 60.626 55.000 0.00 0.00 0.00 3.55
6002 7098 0.033208 GCCTCATCCCCAACCATTCA 60.033 55.000 0.00 0.00 0.00 2.57
6055 7151 3.946606 AGAACAGATGATGATGCACACA 58.053 40.909 0.00 0.00 0.00 3.72
6056 7152 4.329392 AGAACAGATGATGATGCACACAA 58.671 39.130 0.00 0.00 0.00 3.33
6057 7153 4.763279 AGAACAGATGATGATGCACACAAA 59.237 37.500 0.00 0.00 0.00 2.83
6058 7154 5.242171 AGAACAGATGATGATGCACACAAAA 59.758 36.000 0.00 0.00 0.00 2.44
6059 7155 5.055642 ACAGATGATGATGCACACAAAAG 57.944 39.130 0.00 0.00 0.00 2.27
6060 7156 4.521639 ACAGATGATGATGCACACAAAAGT 59.478 37.500 0.00 0.00 0.00 2.66
6061 7157 5.706833 ACAGATGATGATGCACACAAAAGTA 59.293 36.000 0.00 0.00 0.00 2.24
6262 7368 7.392494 GGAAACCTACCATTCTCCTAAAAAG 57.608 40.000 0.00 0.00 0.00 2.27
6263 7369 6.946583 GGAAACCTACCATTCTCCTAAAAAGT 59.053 38.462 0.00 0.00 0.00 2.66
6266 7372 9.871175 AAACCTACCATTCTCCTAAAAAGTAAA 57.129 29.630 0.00 0.00 0.00 2.01
6267 7373 9.871175 AACCTACCATTCTCCTAAAAAGTAAAA 57.129 29.630 0.00 0.00 0.00 1.52
6268 7374 9.871175 ACCTACCATTCTCCTAAAAAGTAAAAA 57.129 29.630 0.00 0.00 0.00 1.94
6271 7377 7.654568 ACCATTCTCCTAAAAAGTAAAAACCG 58.345 34.615 0.00 0.00 0.00 4.44
6292 7398 6.113411 ACCGATTTATTTTCCTGAGGTGTAG 58.887 40.000 0.00 0.00 0.00 2.74
6313 7419 2.719798 CGTTTTGCAGACTTGTTGAGG 58.280 47.619 0.00 0.00 0.00 3.86
6320 7426 4.318332 TGCAGACTTGTTGAGGATTACTG 58.682 43.478 0.00 0.00 0.00 2.74
6432 7561 2.972713 AGGCCGTACTGTCCATTCATAT 59.027 45.455 0.00 0.00 0.00 1.78
6504 7633 1.069636 GCTTTCAGCTTCGACCAACAG 60.070 52.381 0.00 0.00 38.45 3.16
6526 7655 6.014327 ACAGCATTATTGTTTCAGGGTCATTT 60.014 34.615 0.00 0.00 0.00 2.32
6527 7656 6.875195 CAGCATTATTGTTTCAGGGTCATTTT 59.125 34.615 0.00 0.00 0.00 1.82
6536 7665 2.373169 TCAGGGTCATTTTCACAGAGCT 59.627 45.455 0.00 0.00 0.00 4.09
6537 7666 2.746362 CAGGGTCATTTTCACAGAGCTC 59.254 50.000 5.27 5.27 0.00 4.09
6554 7683 3.019933 GCTCGAGCTAAAGATACCTGG 57.980 52.381 29.88 0.00 38.21 4.45
6555 7684 2.864489 GCTCGAGCTAAAGATACCTGGC 60.864 54.545 29.88 0.00 38.21 4.85
6556 7685 2.362397 CTCGAGCTAAAGATACCTGGCA 59.638 50.000 0.00 0.00 0.00 4.92
6557 7686 2.764010 TCGAGCTAAAGATACCTGGCAA 59.236 45.455 0.00 0.00 0.00 4.52
6558 7687 3.196901 TCGAGCTAAAGATACCTGGCAAA 59.803 43.478 0.00 0.00 0.00 3.68
6559 7688 3.938963 CGAGCTAAAGATACCTGGCAAAA 59.061 43.478 0.00 0.00 0.00 2.44
6560 7689 4.201822 CGAGCTAAAGATACCTGGCAAAAC 60.202 45.833 0.00 0.00 0.00 2.43
6561 7690 4.923415 AGCTAAAGATACCTGGCAAAACT 58.077 39.130 0.00 0.00 0.00 2.66
6562 7691 5.325239 AGCTAAAGATACCTGGCAAAACTT 58.675 37.500 0.00 0.00 0.00 2.66
6563 7692 6.481643 AGCTAAAGATACCTGGCAAAACTTA 58.518 36.000 0.00 0.00 0.00 2.24
6564 7693 6.599638 AGCTAAAGATACCTGGCAAAACTTAG 59.400 38.462 0.00 0.00 0.00 2.18
6565 7694 6.374613 GCTAAAGATACCTGGCAAAACTTAGT 59.625 38.462 0.00 0.00 0.00 2.24
6566 7695 7.094334 GCTAAAGATACCTGGCAAAACTTAGTT 60.094 37.037 0.00 0.00 0.00 2.24
6567 7696 9.444600 CTAAAGATACCTGGCAAAACTTAGTTA 57.555 33.333 0.00 0.00 0.00 2.24
6568 7697 8.700439 AAAGATACCTGGCAAAACTTAGTTAA 57.300 30.769 0.00 0.00 0.00 2.01
6569 7698 7.683437 AGATACCTGGCAAAACTTAGTTAAC 57.317 36.000 0.00 0.00 0.00 2.01
6570 7699 7.228590 AGATACCTGGCAAAACTTAGTTAACA 58.771 34.615 8.61 0.00 0.00 2.41
6571 7700 7.722285 AGATACCTGGCAAAACTTAGTTAACAA 59.278 33.333 8.61 0.00 0.00 2.83
6572 7701 6.532988 ACCTGGCAAAACTTAGTTAACAAA 57.467 33.333 8.61 0.00 0.00 2.83
6573 7702 6.334989 ACCTGGCAAAACTTAGTTAACAAAC 58.665 36.000 8.61 0.00 0.00 2.93
6574 7703 6.153851 ACCTGGCAAAACTTAGTTAACAAACT 59.846 34.615 8.61 0.00 36.82 2.66
6575 7704 6.695713 CCTGGCAAAACTTAGTTAACAAACTC 59.304 38.462 8.61 0.00 34.37 3.01
6576 7705 7.399245 TGGCAAAACTTAGTTAACAAACTCT 57.601 32.000 8.61 0.00 34.37 3.24
6577 7706 7.254852 TGGCAAAACTTAGTTAACAAACTCTG 58.745 34.615 8.61 0.00 34.37 3.35
6578 7707 6.198403 GGCAAAACTTAGTTAACAAACTCTGC 59.802 38.462 8.61 7.94 34.37 4.26
6579 7708 6.972901 GCAAAACTTAGTTAACAAACTCTGCT 59.027 34.615 8.61 0.00 34.37 4.24
6580 7709 7.044052 GCAAAACTTAGTTAACAAACTCTGCTG 60.044 37.037 8.61 0.00 34.37 4.41
6581 7710 5.674933 ACTTAGTTAACAAACTCTGCTGC 57.325 39.130 8.61 0.00 34.37 5.25
6582 7711 5.123227 ACTTAGTTAACAAACTCTGCTGCA 58.877 37.500 8.61 0.88 34.37 4.41
6583 7712 5.765182 ACTTAGTTAACAAACTCTGCTGCAT 59.235 36.000 8.61 0.00 34.37 3.96
6584 7713 4.494350 AGTTAACAAACTCTGCTGCATG 57.506 40.909 8.61 0.00 0.00 4.06
6585 7714 4.136796 AGTTAACAAACTCTGCTGCATGA 58.863 39.130 8.61 2.17 0.00 3.07
6586 7715 4.763793 AGTTAACAAACTCTGCTGCATGAT 59.236 37.500 8.61 0.00 0.00 2.45
6587 7716 5.939883 AGTTAACAAACTCTGCTGCATGATA 59.060 36.000 8.61 0.00 0.00 2.15
6588 7717 6.600822 AGTTAACAAACTCTGCTGCATGATAT 59.399 34.615 8.61 0.00 0.00 1.63
6589 7718 7.770433 AGTTAACAAACTCTGCTGCATGATATA 59.230 33.333 8.61 0.00 0.00 0.86
6590 7719 8.397906 GTTAACAAACTCTGCTGCATGATATAA 58.602 33.333 1.31 0.00 0.00 0.98
6591 7720 7.578310 AACAAACTCTGCTGCATGATATAAT 57.422 32.000 1.31 0.00 0.00 1.28
6592 7721 7.578310 ACAAACTCTGCTGCATGATATAATT 57.422 32.000 1.31 0.00 0.00 1.40
6595 7724 7.436430 AACTCTGCTGCATGATATAATTCAG 57.564 36.000 1.31 0.00 0.00 3.02
6643 7772 3.316308 AGTGTCTTGACAAATTCCAGCAC 59.684 43.478 4.93 0.00 30.61 4.40
6648 7777 1.680735 TGACAAATTCCAGCACCACAC 59.319 47.619 0.00 0.00 0.00 3.82
6725 7860 5.245075 AGCTTCTAACAGATAGTCCATAGCC 59.755 44.000 0.00 0.00 33.08 3.93
6909 9320 0.108186 CTGGACGGCTGCAGTATTGA 60.108 55.000 16.64 0.00 31.28 2.57
6955 9366 3.629398 GCCTGCAAGCTGATGTTATTAGT 59.371 43.478 0.00 0.00 0.00 2.24
6956 9367 4.816385 GCCTGCAAGCTGATGTTATTAGTA 59.184 41.667 0.00 0.00 0.00 1.82
7106 9802 8.001292 TGATCATCCTCTTACTACTCATTCTCA 58.999 37.037 0.00 0.00 0.00 3.27
7147 9843 3.127533 GCCGATCCACTGGTGTGC 61.128 66.667 0.00 0.00 42.54 4.57
7220 9919 2.295909 GACCTCCTATCTGCTGCACTAG 59.704 54.545 0.00 2.93 0.00 2.57
7250 9949 2.609459 GCCTCATCCACACAAACTATCG 59.391 50.000 0.00 0.00 0.00 2.92
7322 10021 2.438254 GCCACGGTGATGCCATCA 60.438 61.111 10.28 2.53 36.97 3.07
7335 10034 1.226542 CCATCACATCTGCCTGCCT 59.773 57.895 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 41 3.142951 GGTACATGTGCGCCCAATATAA 58.857 45.455 9.11 0.00 0.00 0.98
62 67 0.670239 GTGCTTGGGATTTTTGCGGG 60.670 55.000 0.00 0.00 0.00 6.13
107 114 3.117550 TGATGGTGGGGATTCATTACTGG 60.118 47.826 0.00 0.00 0.00 4.00
512 574 2.363406 CCGGGGGTCTAGGTCGTT 60.363 66.667 0.00 0.00 0.00 3.85
748 877 4.701651 TGTAAGCGACTAGAGGGAGATA 57.298 45.455 0.00 0.00 0.00 1.98
779 909 2.125552 CTCATTCGACCCAGCGCA 60.126 61.111 11.47 0.00 0.00 6.09
791 921 0.321653 GTGGGCGACTTGTCCTCATT 60.322 55.000 0.00 0.00 45.26 2.57
880 1011 4.479993 GGCCAGCTCATGACCGCT 62.480 66.667 0.00 3.70 36.83 5.52
908 1039 0.165944 GTGCACGCACACCATCTAAC 59.834 55.000 17.03 0.00 45.53 2.34
910 1041 4.277239 GTGCACGCACACCATCTA 57.723 55.556 17.03 0.00 45.53 1.98
918 1049 0.593128 ATCCTTCAAAGTGCACGCAC 59.407 50.000 14.28 14.28 46.50 5.34
919 1050 1.317613 AATCCTTCAAAGTGCACGCA 58.682 45.000 12.01 0.00 0.00 5.24
920 1051 2.422276 AAATCCTTCAAAGTGCACGC 57.578 45.000 12.01 0.00 0.00 5.34
921 1052 3.119849 CCCTAAATCCTTCAAAGTGCACG 60.120 47.826 12.01 0.00 0.00 5.34
922 1053 3.826729 ACCCTAAATCCTTCAAAGTGCAC 59.173 43.478 9.40 9.40 0.00 4.57
923 1054 3.826157 CACCCTAAATCCTTCAAAGTGCA 59.174 43.478 0.00 0.00 0.00 4.57
924 1055 4.079253 TCACCCTAAATCCTTCAAAGTGC 58.921 43.478 0.00 0.00 0.00 4.40
925 1056 6.660949 AGATTCACCCTAAATCCTTCAAAGTG 59.339 38.462 0.00 0.00 34.34 3.16
926 1057 6.794534 AGATTCACCCTAAATCCTTCAAAGT 58.205 36.000 0.00 0.00 34.34 2.66
927 1058 7.709149 AAGATTCACCCTAAATCCTTCAAAG 57.291 36.000 0.00 0.00 34.34 2.77
930 1061 9.847224 GTTATAAGATTCACCCTAAATCCTTCA 57.153 33.333 0.00 0.00 34.34 3.02
931 1062 9.286170 GGTTATAAGATTCACCCTAAATCCTTC 57.714 37.037 0.00 0.00 34.34 3.46
932 1063 8.787818 TGGTTATAAGATTCACCCTAAATCCTT 58.212 33.333 0.00 0.00 34.34 3.36
933 1064 8.344939 TGGTTATAAGATTCACCCTAAATCCT 57.655 34.615 0.00 0.00 34.34 3.24
934 1065 8.990163 TTGGTTATAAGATTCACCCTAAATCC 57.010 34.615 0.00 0.00 34.34 3.01
937 1068 9.457436 GTCTTTGGTTATAAGATTCACCCTAAA 57.543 33.333 0.00 0.00 34.42 1.85
938 1069 8.607713 TGTCTTTGGTTATAAGATTCACCCTAA 58.392 33.333 0.00 0.00 34.42 2.69
939 1070 8.044908 GTGTCTTTGGTTATAAGATTCACCCTA 58.955 37.037 0.00 0.00 34.42 3.53
940 1071 6.884836 GTGTCTTTGGTTATAAGATTCACCCT 59.115 38.462 0.00 0.00 34.42 4.34
941 1072 6.657541 TGTGTCTTTGGTTATAAGATTCACCC 59.342 38.462 0.00 0.00 34.42 4.61
942 1073 7.361799 GGTGTGTCTTTGGTTATAAGATTCACC 60.362 40.741 17.42 17.42 42.88 4.02
943 1074 7.361799 GGGTGTGTCTTTGGTTATAAGATTCAC 60.362 40.741 0.00 0.00 37.36 3.18
944 1075 6.657541 GGGTGTGTCTTTGGTTATAAGATTCA 59.342 38.462 0.00 0.00 34.42 2.57
945 1076 6.657541 TGGGTGTGTCTTTGGTTATAAGATTC 59.342 38.462 0.00 0.00 34.42 2.52
946 1077 6.548321 TGGGTGTGTCTTTGGTTATAAGATT 58.452 36.000 0.00 0.00 34.42 2.40
947 1078 6.012858 TCTGGGTGTGTCTTTGGTTATAAGAT 60.013 38.462 0.00 0.00 34.42 2.40
948 1079 5.308497 TCTGGGTGTGTCTTTGGTTATAAGA 59.692 40.000 0.00 0.00 0.00 2.10
949 1080 5.411669 GTCTGGGTGTGTCTTTGGTTATAAG 59.588 44.000 0.00 0.00 0.00 1.73
950 1081 5.163184 TGTCTGGGTGTGTCTTTGGTTATAA 60.163 40.000 0.00 0.00 0.00 0.98
951 1082 4.348461 TGTCTGGGTGTGTCTTTGGTTATA 59.652 41.667 0.00 0.00 0.00 0.98
952 1083 3.137544 TGTCTGGGTGTGTCTTTGGTTAT 59.862 43.478 0.00 0.00 0.00 1.89
953 1084 2.506231 TGTCTGGGTGTGTCTTTGGTTA 59.494 45.455 0.00 0.00 0.00 2.85
954 1085 1.283613 TGTCTGGGTGTGTCTTTGGTT 59.716 47.619 0.00 0.00 0.00 3.67
955 1086 0.916086 TGTCTGGGTGTGTCTTTGGT 59.084 50.000 0.00 0.00 0.00 3.67
956 1087 1.308998 GTGTCTGGGTGTGTCTTTGG 58.691 55.000 0.00 0.00 0.00 3.28
957 1088 1.308998 GGTGTCTGGGTGTGTCTTTG 58.691 55.000 0.00 0.00 0.00 2.77
958 1089 0.182775 GGGTGTCTGGGTGTGTCTTT 59.817 55.000 0.00 0.00 0.00 2.52
959 1090 0.694444 AGGGTGTCTGGGTGTGTCTT 60.694 55.000 0.00 0.00 0.00 3.01
960 1091 1.074471 AGGGTGTCTGGGTGTGTCT 60.074 57.895 0.00 0.00 0.00 3.41
961 1092 1.371558 GAGGGTGTCTGGGTGTGTC 59.628 63.158 0.00 0.00 0.00 3.67
962 1093 2.147387 GGAGGGTGTCTGGGTGTGT 61.147 63.158 0.00 0.00 0.00 3.72
963 1094 1.705002 TTGGAGGGTGTCTGGGTGTG 61.705 60.000 0.00 0.00 0.00 3.82
964 1095 1.385347 TTGGAGGGTGTCTGGGTGT 60.385 57.895 0.00 0.00 0.00 4.16
965 1096 1.073199 GTTGGAGGGTGTCTGGGTG 59.927 63.158 0.00 0.00 0.00 4.61
966 1097 2.154074 GGTTGGAGGGTGTCTGGGT 61.154 63.158 0.00 0.00 0.00 4.51
967 1098 1.427072 AAGGTTGGAGGGTGTCTGGG 61.427 60.000 0.00 0.00 0.00 4.45
968 1099 0.478507 AAAGGTTGGAGGGTGTCTGG 59.521 55.000 0.00 0.00 0.00 3.86
971 1102 0.251209 GGGAAAGGTTGGAGGGTGTC 60.251 60.000 0.00 0.00 0.00 3.67
974 1105 1.358051 AACGGGAAAGGTTGGAGGGT 61.358 55.000 0.00 0.00 0.00 4.34
987 1118 5.650266 ACAGTGATAAATTATTGCAACGGGA 59.350 36.000 0.00 0.00 0.00 5.14
1006 1137 2.557317 AGTTGGTTGGAACGTACAGTG 58.443 47.619 0.00 0.00 0.00 3.66
1066 1210 4.704103 TGGGGACTGAGCTCGGCT 62.704 66.667 22.80 9.79 43.88 5.52
1069 1217 2.716017 GGAGTGGGGACTGAGCTCG 61.716 68.421 9.64 6.63 0.00 5.03
1114 1262 2.277404 GCGAGGAGGAGGAGGAGT 59.723 66.667 0.00 0.00 0.00 3.85
1115 1263 2.520741 GGCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1116 1264 3.024356 AGGCGAGGAGGAGGAGGA 61.024 66.667 0.00 0.00 0.00 3.71
1118 1266 2.837291 CCAGGCGAGGAGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
1119 1267 3.239627 AACCAGGCGAGGAGGAGGA 62.240 63.158 6.03 0.00 0.00 3.71
1133 1281 1.694150 GGATGATGATCCGAGGAACCA 59.306 52.381 0.00 0.00 39.04 3.67
1192 1340 2.349969 TTCGCTGATGGATCGACCGG 62.350 60.000 0.00 0.00 42.61 5.28
1231 1379 0.321298 TTGAACTTAGTGCTCCGGGC 60.321 55.000 0.00 4.52 42.22 6.13
1238 1386 0.373716 CGCCGGATTGAACTTAGTGC 59.626 55.000 5.05 0.00 0.00 4.40
1242 1390 0.390078 TTCGCGCCGGATTGAACTTA 60.390 50.000 5.05 0.00 0.00 2.24
1275 1423 2.125350 GCAGCGAGAAGGGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
1280 1428 2.818714 CTGCAGCAGCGAGAAGGG 60.819 66.667 10.14 0.00 46.23 3.95
1285 1433 1.061711 GACATAAACTGCAGCAGCGAG 59.938 52.381 23.05 10.44 46.23 5.03
1290 1438 2.813754 GACAAGGACATAAACTGCAGCA 59.186 45.455 15.27 0.00 0.00 4.41
1367 1547 1.663695 CCCTGTACAGCCCAATAACG 58.336 55.000 17.86 0.26 0.00 3.18
1380 1565 3.998913 TCAATCAATCACTGCCCTGTA 57.001 42.857 0.00 0.00 0.00 2.74
1452 1643 0.887387 GTCCTCCTCCTCGATCTCCG 60.887 65.000 0.00 0.00 40.25 4.63
1595 1786 2.499827 GGATCCGGAAGAGGACCCG 61.500 68.421 9.01 0.00 44.07 5.28
1676 1902 3.502211 GGAGGCAGAGATGAAACGAAAAA 59.498 43.478 0.00 0.00 0.00 1.94
1682 1908 2.169352 TGCTAGGAGGCAGAGATGAAAC 59.831 50.000 0.00 0.00 37.29 2.78
1746 1972 7.593273 TCATGGCGTATTAAAACTGTCAAAAAG 59.407 33.333 0.00 0.00 0.00 2.27
1747 1973 7.426410 TCATGGCGTATTAAAACTGTCAAAAA 58.574 30.769 0.00 0.00 0.00 1.94
1748 1974 6.971602 TCATGGCGTATTAAAACTGTCAAAA 58.028 32.000 0.00 0.00 0.00 2.44
1749 1975 6.561737 TCATGGCGTATTAAAACTGTCAAA 57.438 33.333 0.00 0.00 0.00 2.69
1750 1976 6.375377 GTTCATGGCGTATTAAAACTGTCAA 58.625 36.000 0.00 0.00 0.00 3.18
1751 1977 5.106475 GGTTCATGGCGTATTAAAACTGTCA 60.106 40.000 0.00 0.00 0.00 3.58
1752 1978 5.123344 AGGTTCATGGCGTATTAAAACTGTC 59.877 40.000 0.00 0.00 0.00 3.51
1779 2358 9.989869 GAAATTGTTTTAGAAGTCATAGTAGCC 57.010 33.333 0.00 0.00 0.00 3.93
1823 2457 9.770097 TGCCAGTCATTGAACAATAAAATAAAA 57.230 25.926 0.00 0.00 0.00 1.52
1824 2458 9.941325 ATGCCAGTCATTGAACAATAAAATAAA 57.059 25.926 0.00 0.00 29.16 1.40
1825 2459 9.941325 AATGCCAGTCATTGAACAATAAAATAA 57.059 25.926 0.00 0.00 43.40 1.40
1826 2460 9.941325 AAATGCCAGTCATTGAACAATAAAATA 57.059 25.926 0.00 0.00 44.23 1.40
1827 2461 8.851541 AAATGCCAGTCATTGAACAATAAAAT 57.148 26.923 0.00 0.00 44.23 1.82
1828 2462 8.149647 AGAAATGCCAGTCATTGAACAATAAAA 58.850 29.630 0.00 0.00 44.23 1.52
1829 2463 7.669427 AGAAATGCCAGTCATTGAACAATAAA 58.331 30.769 0.00 0.00 44.23 1.40
1830 2464 7.230849 AGAAATGCCAGTCATTGAACAATAA 57.769 32.000 0.00 0.00 44.23 1.40
1831 2465 6.839124 AGAAATGCCAGTCATTGAACAATA 57.161 33.333 0.00 0.00 44.23 1.90
1832 2466 5.733620 AGAAATGCCAGTCATTGAACAAT 57.266 34.783 0.00 0.00 44.23 2.71
1833 2467 6.623486 CATAGAAATGCCAGTCATTGAACAA 58.377 36.000 0.00 0.00 44.23 2.83
1834 2468 6.198650 CATAGAAATGCCAGTCATTGAACA 57.801 37.500 0.00 0.00 44.23 3.18
1881 2515 6.996180 TTAACAGTATGAAGCTAGCCCTAT 57.004 37.500 12.13 5.78 39.69 2.57
1883 2517 5.693769 TTTAACAGTATGAAGCTAGCCCT 57.306 39.130 12.13 0.00 39.69 5.19
1884 2518 5.823045 ACATTTAACAGTATGAAGCTAGCCC 59.177 40.000 12.13 4.28 39.69 5.19
1935 2580 6.579666 AAATTTCTTCAAGATGCTGCTACA 57.420 33.333 0.00 0.00 0.00 2.74
1952 2599 7.807907 CCTGTGACACTGTAACCATAAAATTTC 59.192 37.037 7.20 0.00 0.00 2.17
1977 2624 2.354805 GGTGTTCTGATAGGTGTGACCC 60.355 54.545 0.00 0.00 39.75 4.46
1989 2636 1.486310 ACTCTGCAGTTGGTGTTCTGA 59.514 47.619 14.67 0.00 34.02 3.27
2073 2731 5.999205 ATCACAAATTGCCCACATTTAGA 57.001 34.783 0.00 0.00 0.00 2.10
2078 2738 4.080975 CCCTTAATCACAAATTGCCCACAT 60.081 41.667 0.00 0.00 0.00 3.21
2151 2824 2.023501 AGAGGATGAAGAGCAGGTAGGT 60.024 50.000 0.00 0.00 0.00 3.08
2152 2825 2.364970 CAGAGGATGAAGAGCAGGTAGG 59.635 54.545 0.00 0.00 0.00 3.18
2153 2826 3.295093 TCAGAGGATGAAGAGCAGGTAG 58.705 50.000 0.00 0.00 34.02 3.18
2154 2827 3.388552 TCAGAGGATGAAGAGCAGGTA 57.611 47.619 0.00 0.00 34.02 3.08
2230 2910 2.172717 CCATTCCAGTTCTTCCCGGTAT 59.827 50.000 0.00 0.00 0.00 2.73
2234 2914 0.322456 TGCCATTCCAGTTCTTCCCG 60.322 55.000 0.00 0.00 0.00 5.14
2242 2922 0.112995 TCCTTGCTTGCCATTCCAGT 59.887 50.000 0.00 0.00 0.00 4.00
2418 3101 7.663081 TCATCAGATTCAAGTAAAACAGCTTCT 59.337 33.333 0.00 0.00 0.00 2.85
2474 3157 2.809696 AGCTTGCCAATGTTGAATTTGC 59.190 40.909 0.00 0.00 0.00 3.68
2615 3331 5.533903 ACAATGATCATCCTACCAAATGCTC 59.466 40.000 9.06 0.00 0.00 4.26
2642 3358 4.145052 GGTAGCTGGGGAATTAAATGAGG 58.855 47.826 0.00 0.00 0.00 3.86
2770 3616 9.224267 GGCATTTCTCATCATATGTTGTACTAT 57.776 33.333 12.41 2.54 0.00 2.12
2783 3629 6.100279 AGGATTGTACTAGGCATTTCTCATCA 59.900 38.462 0.00 0.00 0.00 3.07
2902 3748 1.135803 CCCTTTGAAACCACGTATGCG 60.136 52.381 0.19 0.19 44.93 4.73
2911 3757 2.167487 TGACAGTTTGCCCTTTGAAACC 59.833 45.455 0.00 0.00 33.34 3.27
2984 3830 4.152580 GCTAGGAGAAGAAACGGTTGAAAG 59.847 45.833 0.00 0.00 0.00 2.62
2985 3831 4.062991 GCTAGGAGAAGAAACGGTTGAAA 58.937 43.478 0.00 0.00 0.00 2.69
3037 3883 5.633830 ACCAAATGCAGACTTGAGTATTG 57.366 39.130 7.37 0.00 0.00 1.90
3060 3906 6.916360 ACCAACACATATTCAGAAACCAAT 57.084 33.333 0.00 0.00 0.00 3.16
3144 4017 3.758554 GAGGTTAAGCTGCTGATCCAAAA 59.241 43.478 12.82 0.00 0.00 2.44
3174 4047 6.783708 TTTATGTTCCTGAAAGTTTGGTGT 57.216 33.333 0.00 0.00 0.00 4.16
3203 4117 5.746990 AGACAGAATAGTTAGCACCACTT 57.253 39.130 0.00 0.00 0.00 3.16
3208 4122 5.651530 TGCAGTAGACAGAATAGTTAGCAC 58.348 41.667 0.00 0.00 0.00 4.40
3210 4124 6.137794 TCTGCAGTAGACAGAATAGTTAGC 57.862 41.667 14.67 0.00 41.10 3.09
3284 4198 0.370273 GTGATCACGTTGCGATGACC 59.630 55.000 10.69 0.00 0.00 4.02
3369 4296 1.732259 GTTATCAGGGTTGTGTCAGCG 59.268 52.381 0.00 0.00 0.00 5.18
3474 4404 0.914417 GGTCAGGGATGTCTGGGGAA 60.914 60.000 0.00 0.00 35.58 3.97
3528 4458 2.719739 ACCTGGTCATGAGAATGCTTG 58.280 47.619 0.00 0.00 0.00 4.01
3639 4619 6.429692 CACTTGGACACATATGTTACTTTGGA 59.570 38.462 5.37 0.00 39.95 3.53
3652 4654 2.585330 TGCACATTCACTTGGACACAT 58.415 42.857 0.00 0.00 0.00 3.21
3773 4775 1.080705 GGAGTCGACCGGTTCAGTG 60.081 63.158 9.42 0.00 0.00 3.66
3919 4923 4.582459 GATTTCTCGAAGCTTGATTTCGG 58.418 43.478 2.10 0.00 45.46 4.30
3941 4945 2.738846 CACCATTTCTTCTGTCAGGTCG 59.261 50.000 0.00 0.00 0.00 4.79
4033 5037 2.810852 GTTGCTTTCTGTCCAGAAGAGG 59.189 50.000 9.48 6.23 46.80 3.69
4243 5247 2.566952 AACTTTCACTGCTGCAACAC 57.433 45.000 3.02 0.00 0.00 3.32
4328 5332 6.372937 GCAGCTAATAAAGGAGAGTTCTTTGT 59.627 38.462 0.00 0.00 36.12 2.83
4331 5335 6.070538 TGAGCAGCTAATAAAGGAGAGTTCTT 60.071 38.462 0.00 0.00 0.00 2.52
4333 5337 5.665459 TGAGCAGCTAATAAAGGAGAGTTC 58.335 41.667 0.00 0.00 0.00 3.01
4336 5340 7.170658 GTGTAATGAGCAGCTAATAAAGGAGAG 59.829 40.741 0.00 0.00 0.00 3.20
4338 5342 6.203723 GGTGTAATGAGCAGCTAATAAAGGAG 59.796 42.308 0.00 0.00 0.00 3.69
4340 5344 5.822519 TGGTGTAATGAGCAGCTAATAAAGG 59.177 40.000 0.00 0.00 35.60 3.11
4367 5375 8.447833 TCCTAATTATGTTTGCTAAAAGTCACG 58.552 33.333 0.00 0.00 0.00 4.35
4390 5400 7.406104 AGCTCAGGAATGTATTAAAGTTTCCT 58.594 34.615 0.00 6.55 45.40 3.36
4402 5412 7.973402 TGGCTAAATATTAGCTCAGGAATGTA 58.027 34.615 18.49 0.00 40.25 2.29
4406 5416 8.660435 AGTAATGGCTAAATATTAGCTCAGGAA 58.340 33.333 18.49 5.64 40.25 3.36
4420 5430 9.693739 TTAGATCATCCAAAAGTAATGGCTAAA 57.306 29.630 0.00 0.00 37.88 1.85
4504 5530 3.435327 TCGGTGACATGCAAAGTTCATAC 59.565 43.478 0.00 0.00 0.00 2.39
4518 5544 4.610605 TTACTTCCTCATTTCGGTGACA 57.389 40.909 0.00 0.00 0.00 3.58
4520 5546 5.800296 TGATTTACTTCCTCATTTCGGTGA 58.200 37.500 0.00 0.00 0.00 4.02
4521 5547 6.683974 ATGATTTACTTCCTCATTTCGGTG 57.316 37.500 0.00 0.00 0.00 4.94
4522 5548 8.840321 CAATATGATTTACTTCCTCATTTCGGT 58.160 33.333 0.00 0.00 32.20 4.69
4523 5549 8.840321 ACAATATGATTTACTTCCTCATTTCGG 58.160 33.333 0.00 0.00 32.20 4.30
4524 5550 9.869844 GACAATATGATTTACTTCCTCATTTCG 57.130 33.333 0.00 0.00 32.20 3.46
4595 5633 6.543430 AGCCTAGCCAGATAGAAATATGAG 57.457 41.667 0.00 0.00 0.00 2.90
4597 5635 7.038659 GTGTAGCCTAGCCAGATAGAAATATG 58.961 42.308 0.00 0.00 0.00 1.78
4600 5638 4.901849 TGTGTAGCCTAGCCAGATAGAAAT 59.098 41.667 0.00 0.00 0.00 2.17
4608 5646 2.484417 CCTCATTGTGTAGCCTAGCCAG 60.484 54.545 0.00 0.00 0.00 4.85
4616 5654 1.755179 ACATGGCCTCATTGTGTAGC 58.245 50.000 3.32 0.00 0.00 3.58
4624 5662 6.855763 TGAAAATAAGAAACATGGCCTCAT 57.144 33.333 3.32 0.00 0.00 2.90
4625 5663 6.662865 TTGAAAATAAGAAACATGGCCTCA 57.337 33.333 3.32 0.00 0.00 3.86
4626 5664 8.445493 CAAATTGAAAATAAGAAACATGGCCTC 58.555 33.333 3.32 0.00 0.00 4.70
4628 5666 8.321650 TCAAATTGAAAATAAGAAACATGGCC 57.678 30.769 0.00 0.00 0.00 5.36
4666 5705 7.497909 GTCCGAGGTCAAGGATGAATATTTTAA 59.502 37.037 0.00 0.00 38.97 1.52
4688 5727 4.368315 TGAATATTTGATCTCACCGTCCG 58.632 43.478 0.00 0.00 0.00 4.79
4745 5784 9.045223 GTTTGGATTTAATTTTCTTGAGCACTT 57.955 29.630 0.00 0.00 0.00 3.16
4747 5786 8.364129 TGTTTGGATTTAATTTTCTTGAGCAC 57.636 30.769 0.00 0.00 0.00 4.40
4755 5794 9.912634 TCTGATGTCTGTTTGGATTTAATTTTC 57.087 29.630 0.00 0.00 0.00 2.29
4764 5803 5.954296 CAAACTCTGATGTCTGTTTGGAT 57.046 39.130 10.10 0.00 42.93 3.41
4786 5825 5.815740 CATAGGTGTATGTCTGGTGTTAACC 59.184 44.000 2.48 0.00 38.10 2.85
4789 5828 5.955959 AGTCATAGGTGTATGTCTGGTGTTA 59.044 40.000 0.00 0.00 37.81 2.41
4791 5830 4.353777 AGTCATAGGTGTATGTCTGGTGT 58.646 43.478 0.00 0.00 37.81 4.16
4795 5834 7.672983 AAAACAAGTCATAGGTGTATGTCTG 57.327 36.000 0.00 0.00 35.83 3.51
4796 5835 7.719633 ACAAAAACAAGTCATAGGTGTATGTCT 59.280 33.333 0.00 0.00 36.82 3.41
4797 5836 7.871853 ACAAAAACAAGTCATAGGTGTATGTC 58.128 34.615 0.00 0.00 37.81 3.06
4798 5837 7.817418 ACAAAAACAAGTCATAGGTGTATGT 57.183 32.000 0.00 0.00 37.81 2.29
4801 5876 8.057536 ACAAACAAAAACAAGTCATAGGTGTA 57.942 30.769 0.00 0.00 0.00 2.90
4821 5896 7.330700 TCTGTTCTGTTTTTGGATTCAACAAAC 59.669 33.333 13.36 13.36 37.53 2.93
4828 5903 7.209475 TGGAATTCTGTTCTGTTTTTGGATTC 58.791 34.615 5.23 0.00 0.00 2.52
4833 5908 8.422973 TGAATTGGAATTCTGTTCTGTTTTTG 57.577 30.769 12.22 0.00 43.97 2.44
4851 5926 9.912634 ACAGTTCATTTGTAAATACTGAATTGG 57.087 29.630 19.46 6.66 37.24 3.16
4872 5947 9.574516 AATCCTTAAAATGTTCTAGTCACAGTT 57.425 29.630 5.15 5.15 34.01 3.16
4953 6038 8.814038 ACAGTCCATTTCTAAAAGCTGAATAT 57.186 30.769 0.00 0.00 0.00 1.28
4954 6039 7.882791 TGACAGTCCATTTCTAAAAGCTGAATA 59.117 33.333 0.00 0.00 0.00 1.75
5066 6159 4.115199 GGGTGCCGGATCTTGCCT 62.115 66.667 5.05 0.00 0.00 4.75
5273 6366 1.306997 ACGGTGGATGATGGGGTCT 60.307 57.895 0.00 0.00 0.00 3.85
5603 6696 0.539669 TCTCAGCGAAGGAGTCACCA 60.540 55.000 0.00 0.00 42.04 4.17
5618 6711 1.591703 GGTCACGTCCAGCATCTCA 59.408 57.895 0.00 0.00 0.00 3.27
5747 6840 1.901085 GTCCTTGATCCGCTCCAGT 59.099 57.895 0.00 0.00 0.00 4.00
5915 7011 1.037579 TCACCCATGTCTCGATCGCT 61.038 55.000 11.09 0.00 0.00 4.93
5974 7070 1.630126 GGGGATGAGGCTCTTGCTCA 61.630 60.000 16.72 0.00 39.59 4.26
5999 7095 3.000819 ATGGCCGACCGGAGTGAA 61.001 61.111 9.46 0.00 39.70 3.18
6002 7098 2.764128 ATGATGGCCGACCGGAGT 60.764 61.111 9.46 0.00 39.70 3.85
6056 7152 8.947115 GCACAAGGTCTATCTAACATTTACTTT 58.053 33.333 0.00 0.00 0.00 2.66
6057 7153 8.100791 TGCACAAGGTCTATCTAACATTTACTT 58.899 33.333 0.00 0.00 0.00 2.24
6058 7154 7.620880 TGCACAAGGTCTATCTAACATTTACT 58.379 34.615 0.00 0.00 0.00 2.24
6059 7155 7.764443 TCTGCACAAGGTCTATCTAACATTTAC 59.236 37.037 0.00 0.00 0.00 2.01
6060 7156 7.847096 TCTGCACAAGGTCTATCTAACATTTA 58.153 34.615 0.00 0.00 0.00 1.40
6061 7157 6.711277 TCTGCACAAGGTCTATCTAACATTT 58.289 36.000 0.00 0.00 0.00 2.32
6233 7339 1.923148 AGAATGGTAGGTTTCCCTGGG 59.077 52.381 6.33 6.33 42.67 4.45
6248 7354 9.908152 AATCGGTTTTTACTTTTTAGGAGAATG 57.092 29.630 0.00 0.00 0.00 2.67
6262 7368 8.301720 ACCTCAGGAAAATAAATCGGTTTTTAC 58.698 33.333 0.00 0.00 0.00 2.01
6263 7369 8.301002 CACCTCAGGAAAATAAATCGGTTTTTA 58.699 33.333 0.00 0.00 0.00 1.52
6266 7372 5.773176 ACACCTCAGGAAAATAAATCGGTTT 59.227 36.000 0.00 0.00 0.00 3.27
6267 7373 5.321927 ACACCTCAGGAAAATAAATCGGTT 58.678 37.500 0.00 0.00 0.00 4.44
6268 7374 4.918588 ACACCTCAGGAAAATAAATCGGT 58.081 39.130 0.00 0.00 0.00 4.69
6269 7375 5.007724 GCTACACCTCAGGAAAATAAATCGG 59.992 44.000 0.00 0.00 0.00 4.18
6270 7376 5.276868 CGCTACACCTCAGGAAAATAAATCG 60.277 44.000 0.00 0.00 0.00 3.34
6271 7377 5.585047 ACGCTACACCTCAGGAAAATAAATC 59.415 40.000 0.00 0.00 0.00 2.17
6292 7398 2.111756 CTCAACAAGTCTGCAAAACGC 58.888 47.619 0.00 0.00 42.89 4.84
6348 7454 1.470098 GGTGAGGAATCACATGCACAC 59.530 52.381 10.29 0.00 42.07 3.82
6432 7561 9.788889 TCATAACGTCAGAATTCTAGTCCTATA 57.211 33.333 7.86 0.00 0.00 1.31
6452 7581 1.727857 CGTGTTGCCGGCTTTCATAAC 60.728 52.381 29.70 21.86 0.00 1.89
6504 7633 6.873076 TGAAAATGACCCTGAAACAATAATGC 59.127 34.615 0.00 0.00 0.00 3.56
6536 7665 2.384828 TGCCAGGTATCTTTAGCTCGA 58.615 47.619 0.00 0.00 33.94 4.04
6537 7666 2.890808 TGCCAGGTATCTTTAGCTCG 57.109 50.000 0.00 0.00 33.94 5.03
6542 7671 9.796180 TTAACTAAGTTTTGCCAGGTATCTTTA 57.204 29.630 0.00 0.00 0.00 1.85
6550 7679 6.569780 AGTTTGTTAACTAAGTTTTGCCAGG 58.430 36.000 7.22 0.00 42.73 4.45
6553 7682 6.198403 GCAGAGTTTGTTAACTAAGTTTTGCC 59.802 38.462 22.47 13.18 44.51 4.52
6554 7683 6.972901 AGCAGAGTTTGTTAACTAAGTTTTGC 59.027 34.615 23.92 23.92 44.51 3.68
6555 7684 7.044052 GCAGCAGAGTTTGTTAACTAAGTTTTG 60.044 37.037 10.76 12.41 44.51 2.44
6556 7685 6.972901 GCAGCAGAGTTTGTTAACTAAGTTTT 59.027 34.615 10.76 1.98 44.51 2.43
6557 7686 6.094881 TGCAGCAGAGTTTGTTAACTAAGTTT 59.905 34.615 10.76 3.72 44.51 2.66
6558 7687 5.588648 TGCAGCAGAGTTTGTTAACTAAGTT 59.411 36.000 10.76 0.14 44.51 2.66
6559 7688 5.123227 TGCAGCAGAGTTTGTTAACTAAGT 58.877 37.500 9.47 9.47 44.51 2.24
6560 7689 5.673337 TGCAGCAGAGTTTGTTAACTAAG 57.327 39.130 7.22 0.00 44.51 2.18
6561 7690 5.762711 TCATGCAGCAGAGTTTGTTAACTAA 59.237 36.000 7.22 2.46 44.51 2.24
6562 7691 5.304778 TCATGCAGCAGAGTTTGTTAACTA 58.695 37.500 7.22 0.00 44.51 2.24
6564 7693 4.488126 TCATGCAGCAGAGTTTGTTAAC 57.512 40.909 0.00 0.00 34.36 2.01
6565 7694 8.504812 TTATATCATGCAGCAGAGTTTGTTAA 57.495 30.769 0.00 0.00 0.00 2.01
6566 7695 8.681486 ATTATATCATGCAGCAGAGTTTGTTA 57.319 30.769 0.00 0.00 0.00 2.41
6567 7696 7.578310 ATTATATCATGCAGCAGAGTTTGTT 57.422 32.000 0.00 0.00 0.00 2.83
6568 7697 7.283807 TGAATTATATCATGCAGCAGAGTTTGT 59.716 33.333 0.00 0.00 0.00 2.83
6569 7698 7.645402 TGAATTATATCATGCAGCAGAGTTTG 58.355 34.615 0.00 0.00 0.00 2.93
6570 7699 7.521748 GCTGAATTATATCATGCAGCAGAGTTT 60.522 37.037 20.67 0.00 45.78 2.66
6571 7700 6.072618 GCTGAATTATATCATGCAGCAGAGTT 60.073 38.462 20.67 0.00 45.78 3.01
6572 7701 5.411977 GCTGAATTATATCATGCAGCAGAGT 59.588 40.000 20.67 0.00 45.78 3.24
6573 7702 5.870444 GCTGAATTATATCATGCAGCAGAG 58.130 41.667 20.67 0.00 45.78 3.35
6574 7703 5.874895 GCTGAATTATATCATGCAGCAGA 57.125 39.130 20.67 0.00 45.78 4.26
6577 7706 5.048224 ACTTGGCTGAATTATATCATGCAGC 60.048 40.000 18.29 18.29 45.77 5.25
6578 7707 6.570672 ACTTGGCTGAATTATATCATGCAG 57.429 37.500 0.92 0.92 0.00 4.41
6579 7708 6.964807 AACTTGGCTGAATTATATCATGCA 57.035 33.333 0.00 0.00 0.00 3.96
6580 7709 7.809806 GGTAAACTTGGCTGAATTATATCATGC 59.190 37.037 0.00 0.00 0.00 4.06
6581 7710 9.071276 AGGTAAACTTGGCTGAATTATATCATG 57.929 33.333 0.00 0.00 0.00 3.07
6583 7712 9.555727 GTAGGTAAACTTGGCTGAATTATATCA 57.444 33.333 0.00 0.00 0.00 2.15
6584 7713 9.780186 AGTAGGTAAACTTGGCTGAATTATATC 57.220 33.333 0.00 0.00 0.00 1.63
6586 7715 9.609346 GAAGTAGGTAAACTTGGCTGAATTATA 57.391 33.333 0.00 0.00 39.78 0.98
6587 7716 8.107095 TGAAGTAGGTAAACTTGGCTGAATTAT 58.893 33.333 0.00 0.00 39.78 1.28
6588 7717 7.455058 TGAAGTAGGTAAACTTGGCTGAATTA 58.545 34.615 0.00 0.00 39.78 1.40
6589 7718 6.303839 TGAAGTAGGTAAACTTGGCTGAATT 58.696 36.000 0.00 0.00 39.78 2.17
6590 7719 5.876357 TGAAGTAGGTAAACTTGGCTGAAT 58.124 37.500 0.00 0.00 39.78 2.57
6591 7720 5.298989 TGAAGTAGGTAAACTTGGCTGAA 57.701 39.130 0.00 0.00 39.78 3.02
6592 7721 4.262894 CCTGAAGTAGGTAAACTTGGCTGA 60.263 45.833 0.00 0.00 39.78 4.26
6622 7751 3.550842 GGTGCTGGAATTTGTCAAGACAC 60.551 47.826 1.73 0.00 41.67 3.67
6643 7772 4.378459 GGAAATTCTCGTAAGCTTGTGTGG 60.378 45.833 9.86 0.00 37.18 4.17
6648 7777 4.853743 GCTTTGGAAATTCTCGTAAGCTTG 59.146 41.667 9.86 0.00 37.78 4.01
6909 9320 4.142902 CGTCCAATCAAACAGCGTAGAATT 60.143 41.667 0.00 0.00 0.00 2.17
7055 9751 3.927607 GCTCTGGCTAACCTAAAGGTGAC 60.928 52.174 1.55 0.00 41.17 3.67
7106 9802 1.251251 GTGACCAATGGCTTGAAGCT 58.749 50.000 17.59 0.00 41.99 3.74
7147 9843 2.509336 AAATCGGAGTCGCAGCGG 60.509 61.111 16.42 0.00 36.13 5.52
7322 10021 2.271497 GCTGAGGCAGGCAGATGT 59.729 61.111 0.00 0.00 38.54 3.06
7335 10034 4.707791 CTGTGGTGATGCAGCTGA 57.292 55.556 20.43 2.70 32.61 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.