Multiple sequence alignment - TraesCS4A01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G382300 chr4A 100.000 2964 0 0 1 2964 660623461 660626424 0.000000e+00 5474.0
1 TraesCS4A01G382300 chr4A 81.770 1141 109 53 724 1792 660653684 660654797 0.000000e+00 863.0
2 TraesCS4A01G382300 chr4A 83.040 908 113 23 1307 2188 660452450 660453342 0.000000e+00 785.0
3 TraesCS4A01G382300 chr4A 95.089 448 14 8 2520 2964 660228554 660228996 0.000000e+00 699.0
4 TraesCS4A01G382300 chr4A 98.204 334 5 1 2186 2518 650021057 650021390 1.530000e-162 582.0
5 TraesCS4A01G382300 chr7A 86.925 1522 129 38 723 2188 48715033 48716540 0.000000e+00 1644.0
6 TraesCS4A01G382300 chr7A 87.345 1367 128 23 858 2188 48583211 48584568 0.000000e+00 1524.0
7 TraesCS4A01G382300 chr7A 84.764 1037 74 46 757 1729 48755448 48756464 0.000000e+00 963.0
8 TraesCS4A01G382300 chr7A 84.031 908 103 28 1307 2188 48525972 48526863 0.000000e+00 835.0
9 TraesCS4A01G382300 chr7A 92.634 448 25 8 2520 2964 22535542 22535100 3.220000e-179 638.0
10 TraesCS4A01G382300 chr7A 93.750 48 1 2 724 769 48755397 48755444 1.470000e-08 71.3
11 TraesCS4A01G382300 chr7D 85.384 1471 125 41 790 2188 46671322 46669870 0.000000e+00 1443.0
12 TraesCS4A01G382300 chr7D 83.814 902 94 25 1307 2188 46712108 46711239 0.000000e+00 809.0
13 TraesCS4A01G382300 chr7D 81.640 1073 83 64 724 1723 46586950 46585919 0.000000e+00 785.0
14 TraesCS4A01G382300 chr2A 98.661 747 5 4 1 747 554093421 554092680 0.000000e+00 1319.0
15 TraesCS4A01G382300 chr2A 87.079 356 33 13 2517 2868 52548785 52549131 9.960000e-105 390.0
16 TraesCS4A01G382300 chr7B 90.117 769 41 14 1 747 717951895 717951140 0.000000e+00 966.0
17 TraesCS4A01G382300 chr7B 93.080 448 23 8 2520 2964 717543899 717543457 0.000000e+00 649.0
18 TraesCS4A01G382300 chr7B 91.176 340 26 4 1 338 609416308 609415971 2.690000e-125 459.0
19 TraesCS4A01G382300 chr7B 83.704 405 22 12 340 733 612298582 612298211 2.830000e-90 342.0
20 TraesCS4A01G382300 chr7B 84.892 278 26 11 2520 2788 700356871 700357141 1.750000e-67 267.0
21 TraesCS4A01G382300 chr3B 93.126 611 28 7 1 609 824127552 824126954 0.000000e+00 883.0
22 TraesCS4A01G382300 chr3B 90.423 449 24 9 2519 2964 685100539 685100107 9.220000e-160 573.0
23 TraesCS4A01G382300 chr3B 96.154 338 11 2 274 609 824113921 824113584 4.320000e-153 551.0
24 TraesCS4A01G382300 chr3B 95.082 244 12 0 2721 2964 823875877 823876120 4.630000e-103 385.0
25 TraesCS4A01G382300 chr3B 90.476 147 4 1 594 730 824113570 824113424 5.050000e-43 185.0
26 TraesCS4A01G382300 chr3B 90.476 147 4 1 594 730 824126940 824126794 5.050000e-43 185.0
27 TraesCS4A01G382300 chr3B 87.970 133 15 1 1292 1424 191290492 191290623 3.960000e-34 156.0
28 TraesCS4A01G382300 chr4B 94.382 445 17 8 2523 2964 3338499 3338060 0.000000e+00 676.0
29 TraesCS4A01G382300 chr6B 92.188 448 27 8 2520 2964 19357791 19357349 6.970000e-176 627.0
30 TraesCS4A01G382300 chr6B 84.915 411 25 12 340 735 716273743 716273355 5.990000e-102 381.0
31 TraesCS4A01G382300 chr3D 91.741 448 29 8 2520 2964 566644592 566645034 1.510000e-172 616.0
32 TraesCS4A01G382300 chr3D 90.370 405 24 2 337 731 511338578 511338977 4.380000e-143 518.0
33 TraesCS4A01G382300 chr3D 89.565 345 21 5 1 343 574571814 574572145 9.820000e-115 424.0
34 TraesCS4A01G382300 chr3D 88.047 343 34 6 1 340 25347419 25347757 1.660000e-107 399.0
35 TraesCS4A01G382300 chrUn 91.009 456 30 10 2513 2964 371704821 371705269 3.270000e-169 604.0
36 TraesCS4A01G382300 chrUn 89.231 455 24 14 2515 2964 105267909 105268343 2.010000e-151 545.0
37 TraesCS4A01G382300 chr2B 90.787 445 17 4 2520 2964 60372016 60372436 9.220000e-160 573.0
38 TraesCS4A01G382300 chr1D 89.062 448 19 15 2520 2964 417198786 417199206 2.020000e-146 529.0
39 TraesCS4A01G382300 chr1B 91.789 341 25 3 1 339 453196452 453196791 3.460000e-129 472.0
40 TraesCS4A01G382300 chr1B 91.520 342 24 5 1 339 78819932 78820271 1.610000e-127 466.0
41 TraesCS4A01G382300 chr1B 84.539 304 32 14 2520 2820 16183358 16183067 1.340000e-73 287.0
42 TraesCS4A01G382300 chr2D 88.131 337 34 6 7 340 646570547 646570214 2.140000e-106 396.0
43 TraesCS4A01G382300 chr2D 90.865 208 14 4 2520 2726 71395516 71395313 1.050000e-69 274.0
44 TraesCS4A01G382300 chr5A 87.500 200 14 2 542 731 631972222 631972420 1.380000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G382300 chr4A 660623461 660626424 2963 False 5474.00 5474 100.000 1 2964 1 chr4A.!!$F4 2963
1 TraesCS4A01G382300 chr4A 660653684 660654797 1113 False 863.00 863 81.770 724 1792 1 chr4A.!!$F5 1068
2 TraesCS4A01G382300 chr4A 660452450 660453342 892 False 785.00 785 83.040 1307 2188 1 chr4A.!!$F3 881
3 TraesCS4A01G382300 chr7A 48715033 48716540 1507 False 1644.00 1644 86.925 723 2188 1 chr7A.!!$F3 1465
4 TraesCS4A01G382300 chr7A 48583211 48584568 1357 False 1524.00 1524 87.345 858 2188 1 chr7A.!!$F2 1330
5 TraesCS4A01G382300 chr7A 48525972 48526863 891 False 835.00 835 84.031 1307 2188 1 chr7A.!!$F1 881
6 TraesCS4A01G382300 chr7A 48755397 48756464 1067 False 517.15 963 89.257 724 1729 2 chr7A.!!$F4 1005
7 TraesCS4A01G382300 chr7D 46669870 46671322 1452 True 1443.00 1443 85.384 790 2188 1 chr7D.!!$R2 1398
8 TraesCS4A01G382300 chr7D 46711239 46712108 869 True 809.00 809 83.814 1307 2188 1 chr7D.!!$R3 881
9 TraesCS4A01G382300 chr7D 46585919 46586950 1031 True 785.00 785 81.640 724 1723 1 chr7D.!!$R1 999
10 TraesCS4A01G382300 chr2A 554092680 554093421 741 True 1319.00 1319 98.661 1 747 1 chr2A.!!$R1 746
11 TraesCS4A01G382300 chr7B 717951140 717951895 755 True 966.00 966 90.117 1 747 1 chr7B.!!$R4 746
12 TraesCS4A01G382300 chr3B 824126794 824127552 758 True 534.00 883 91.801 1 730 2 chr3B.!!$R3 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 501 1.003233 TCTAGCCTCTCTCACGTCACA 59.997 52.381 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2462 0.181587 TTTTGTTGCTCGGTCCTCCA 59.818 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
496 501 1.003233 TCTAGCCTCTCTCACGTCACA 59.997 52.381 0.00 0.00 0.00 3.58
740 792 5.493133 ACGGCATTTTCGCATTATTTAGA 57.507 34.783 0.00 0.00 0.00 2.10
782 858 4.796038 ATAATAATTGGATGCTGCTGGC 57.204 40.909 0.00 0.00 42.22 4.85
847 931 1.010350 CATCATTTGCTCGCTCCGC 60.010 57.895 0.00 0.00 0.00 5.54
913 1016 3.134262 AGACCAGATCATCACATCACCAG 59.866 47.826 0.00 0.00 0.00 4.00
914 1017 2.842496 ACCAGATCATCACATCACCAGT 59.158 45.455 0.00 0.00 0.00 4.00
915 1018 3.265221 ACCAGATCATCACATCACCAGTT 59.735 43.478 0.00 0.00 0.00 3.16
916 1019 3.875727 CCAGATCATCACATCACCAGTTC 59.124 47.826 0.00 0.00 0.00 3.01
917 1020 4.510571 CAGATCATCACATCACCAGTTCA 58.489 43.478 0.00 0.00 0.00 3.18
942 1052 2.048597 CGAGCACTGCCACCGTAA 60.049 61.111 0.00 0.00 0.00 3.18
1432 1623 3.703921 GTAAGTGTCTTCTCCTCCTCCT 58.296 50.000 0.00 0.00 0.00 3.69
1466 1705 1.482593 AGTGTTCGTCCATGGATCCTC 59.517 52.381 19.62 10.02 0.00 3.71
1497 1742 0.986019 ACATTGGGCTGACCGGGATA 60.986 55.000 6.32 0.00 44.64 2.59
1767 2018 2.596851 CCCTCACCACCCTCACCAG 61.597 68.421 0.00 0.00 0.00 4.00
1881 2144 1.521681 CATCCCTCGAAGAACGGCC 60.522 63.158 0.00 0.00 42.82 6.13
2025 2296 1.900237 CAAGCTAACAGAAATGGCGC 58.100 50.000 0.00 0.00 0.00 6.53
2092 2363 1.958579 TCCTTCGTTTTCTCCGTCTCA 59.041 47.619 0.00 0.00 0.00 3.27
2102 2373 3.664551 TCTCCGTCTCAGAGGGAAATA 57.335 47.619 16.91 3.45 44.40 1.40
2106 2377 6.134055 TCTCCGTCTCAGAGGGAAATATAAA 58.866 40.000 16.91 0.00 44.40 1.40
2111 2382 8.989980 CCGTCTCAGAGGGAAATATAAATTAAC 58.010 37.037 7.74 0.00 39.66 2.01
2146 2417 0.319728 AGGGCTGAATCGATCGATGG 59.680 55.000 29.99 22.06 34.70 3.51
2159 2430 2.998949 GATGGGTTCCGGGCTTCT 59.001 61.111 0.00 0.00 0.00 2.85
2188 2459 5.750067 GGGATGAATGTATGCATGTGAAAAC 59.250 40.000 10.16 0.00 35.15 2.43
2189 2460 6.331845 GGATGAATGTATGCATGTGAAAACA 58.668 36.000 10.16 4.67 35.15 2.83
2190 2461 6.812656 GGATGAATGTATGCATGTGAAAACAA 59.187 34.615 10.16 0.00 35.15 2.83
2191 2462 7.493320 GGATGAATGTATGCATGTGAAAACAAT 59.507 33.333 10.16 0.00 35.15 2.71
2192 2463 7.583860 TGAATGTATGCATGTGAAAACAATG 57.416 32.000 10.16 0.00 35.15 2.82
2193 2464 6.590677 TGAATGTATGCATGTGAAAACAATGG 59.409 34.615 10.16 0.00 35.15 3.16
2194 2465 5.718724 TGTATGCATGTGAAAACAATGGA 57.281 34.783 10.16 0.00 0.00 3.41
2195 2466 5.712004 TGTATGCATGTGAAAACAATGGAG 58.288 37.500 10.16 0.00 0.00 3.86
2196 2467 3.663995 TGCATGTGAAAACAATGGAGG 57.336 42.857 0.00 0.00 0.00 4.30
2197 2468 3.229293 TGCATGTGAAAACAATGGAGGA 58.771 40.909 0.00 0.00 0.00 3.71
2198 2469 3.005684 TGCATGTGAAAACAATGGAGGAC 59.994 43.478 0.00 0.00 0.00 3.85
2199 2470 3.614870 GCATGTGAAAACAATGGAGGACC 60.615 47.826 0.00 0.00 0.00 4.46
2200 2471 2.226330 TGTGAAAACAATGGAGGACCG 58.774 47.619 0.00 0.00 39.42 4.79
2201 2472 2.158740 TGTGAAAACAATGGAGGACCGA 60.159 45.455 0.00 0.00 39.42 4.69
2202 2473 2.484264 GTGAAAACAATGGAGGACCGAG 59.516 50.000 0.00 0.00 39.42 4.63
2203 2474 1.468914 GAAAACAATGGAGGACCGAGC 59.531 52.381 0.00 0.00 39.42 5.03
2204 2475 0.400213 AAACAATGGAGGACCGAGCA 59.600 50.000 0.00 0.00 39.42 4.26
2205 2476 0.400213 AACAATGGAGGACCGAGCAA 59.600 50.000 0.00 0.00 39.42 3.91
2206 2477 0.321653 ACAATGGAGGACCGAGCAAC 60.322 55.000 0.00 0.00 39.42 4.17
2207 2478 0.321564 CAATGGAGGACCGAGCAACA 60.322 55.000 0.00 0.00 39.42 3.33
2208 2479 0.400213 AATGGAGGACCGAGCAACAA 59.600 50.000 0.00 0.00 39.42 2.83
2209 2480 0.400213 ATGGAGGACCGAGCAACAAA 59.600 50.000 0.00 0.00 39.42 2.83
2210 2481 0.181587 TGGAGGACCGAGCAACAAAA 59.818 50.000 0.00 0.00 39.42 2.44
2211 2482 1.202879 TGGAGGACCGAGCAACAAAAT 60.203 47.619 0.00 0.00 39.42 1.82
2212 2483 1.200020 GGAGGACCGAGCAACAAAATG 59.800 52.381 0.00 0.00 0.00 2.32
2213 2484 2.151202 GAGGACCGAGCAACAAAATGA 58.849 47.619 0.00 0.00 0.00 2.57
2214 2485 2.552315 GAGGACCGAGCAACAAAATGAA 59.448 45.455 0.00 0.00 0.00 2.57
2215 2486 2.554032 AGGACCGAGCAACAAAATGAAG 59.446 45.455 0.00 0.00 0.00 3.02
2216 2487 2.351738 GGACCGAGCAACAAAATGAAGG 60.352 50.000 0.00 0.00 0.00 3.46
2217 2488 1.613437 ACCGAGCAACAAAATGAAGGG 59.387 47.619 0.00 0.00 0.00 3.95
2218 2489 1.613437 CCGAGCAACAAAATGAAGGGT 59.387 47.619 0.00 0.00 0.00 4.34
2219 2490 2.607771 CCGAGCAACAAAATGAAGGGTG 60.608 50.000 0.00 0.00 0.00 4.61
2220 2491 2.034558 CGAGCAACAAAATGAAGGGTGT 59.965 45.455 0.00 0.00 0.00 4.16
2221 2492 3.383761 GAGCAACAAAATGAAGGGTGTG 58.616 45.455 0.00 0.00 0.00 3.82
2222 2493 1.866601 GCAACAAAATGAAGGGTGTGC 59.133 47.619 0.00 0.00 0.00 4.57
2223 2494 2.741228 GCAACAAAATGAAGGGTGTGCA 60.741 45.455 0.00 0.00 0.00 4.57
2224 2495 2.865551 CAACAAAATGAAGGGTGTGCAC 59.134 45.455 10.75 10.75 0.00 4.57
2225 2496 2.106566 ACAAAATGAAGGGTGTGCACA 58.893 42.857 17.42 17.42 0.00 4.57
2226 2497 2.159114 ACAAAATGAAGGGTGTGCACAC 60.159 45.455 36.56 36.56 45.72 3.82
2228 2499 2.949177 AATGAAGGGTGTGCACACTA 57.051 45.000 40.20 24.86 45.95 2.74
2229 2500 2.185004 ATGAAGGGTGTGCACACTAC 57.815 50.000 40.20 32.96 45.95 2.73
2230 2501 0.833949 TGAAGGGTGTGCACACTACA 59.166 50.000 40.20 30.53 45.95 2.74
2231 2502 1.210722 TGAAGGGTGTGCACACTACAA 59.789 47.619 40.20 23.75 45.95 2.41
2232 2503 2.294074 GAAGGGTGTGCACACTACAAA 58.706 47.619 40.20 8.35 45.95 2.83
2233 2504 2.428544 AGGGTGTGCACACTACAAAA 57.571 45.000 40.20 7.56 44.59 2.44
2234 2505 2.729194 AGGGTGTGCACACTACAAAAA 58.271 42.857 40.20 6.78 44.59 1.94
2276 2547 9.890629 ACTAAGCAATAGTTTAAGTGATCATCA 57.109 29.630 0.00 0.00 42.31 3.07
2292 2563 7.935520 GTGATCATCACTCATAGTAGTTCTCA 58.064 38.462 10.81 0.00 43.73 3.27
2293 2564 8.409371 GTGATCATCACTCATAGTAGTTCTCAA 58.591 37.037 10.81 0.00 43.73 3.02
2294 2565 8.409371 TGATCATCACTCATAGTAGTTCTCAAC 58.591 37.037 0.00 0.00 0.00 3.18
2295 2566 7.946381 TCATCACTCATAGTAGTTCTCAACT 57.054 36.000 0.00 0.00 45.40 3.16
2296 2567 8.354711 TCATCACTCATAGTAGTTCTCAACTT 57.645 34.615 0.00 0.00 42.81 2.66
2297 2568 9.462606 TCATCACTCATAGTAGTTCTCAACTTA 57.537 33.333 0.00 0.00 42.81 2.24
2318 2589 9.878599 AACTTATTTTTCACTAGTTCATTGACG 57.121 29.630 0.00 0.00 0.00 4.35
2319 2590 9.268268 ACTTATTTTTCACTAGTTCATTGACGA 57.732 29.630 0.00 0.00 0.00 4.20
2323 2594 9.965824 ATTTTTCACTAGTTCATTGACGAAAAT 57.034 25.926 11.84 5.94 32.84 1.82
2325 2596 9.872757 TTTTCACTAGTTCATTGACGAAAATAC 57.127 29.630 8.57 0.00 0.00 1.89
2326 2597 8.827177 TTCACTAGTTCATTGACGAAAATACT 57.173 30.769 0.00 0.00 0.00 2.12
2327 2598 8.462143 TCACTAGTTCATTGACGAAAATACTC 57.538 34.615 0.00 0.00 0.00 2.59
2328 2599 8.304596 TCACTAGTTCATTGACGAAAATACTCT 58.695 33.333 0.00 0.00 0.00 3.24
2329 2600 8.926710 CACTAGTTCATTGACGAAAATACTCTT 58.073 33.333 0.00 0.00 0.00 2.85
2330 2601 9.490379 ACTAGTTCATTGACGAAAATACTCTTT 57.510 29.630 0.00 0.00 0.00 2.52
2331 2602 9.959775 CTAGTTCATTGACGAAAATACTCTTTC 57.040 33.333 0.00 0.00 32.88 2.62
2332 2603 8.378172 AGTTCATTGACGAAAATACTCTTTCA 57.622 30.769 0.00 0.00 35.43 2.69
2333 2604 8.836413 AGTTCATTGACGAAAATACTCTTTCAA 58.164 29.630 0.00 0.00 35.43 2.69
2334 2605 8.892905 GTTCATTGACGAAAATACTCTTTCAAC 58.107 33.333 0.00 0.00 35.43 3.18
2335 2606 8.148807 TCATTGACGAAAATACTCTTTCAACA 57.851 30.769 0.00 0.00 35.43 3.33
2336 2607 8.067784 TCATTGACGAAAATACTCTTTCAACAC 58.932 33.333 0.00 0.00 35.43 3.32
2337 2608 7.548196 TTGACGAAAATACTCTTTCAACACT 57.452 32.000 0.00 0.00 35.43 3.55
2338 2609 7.173863 TGACGAAAATACTCTTTCAACACTC 57.826 36.000 0.00 0.00 35.43 3.51
2339 2610 6.202188 TGACGAAAATACTCTTTCAACACTCC 59.798 38.462 0.00 0.00 35.43 3.85
2340 2611 6.289064 ACGAAAATACTCTTTCAACACTCCT 58.711 36.000 0.00 0.00 35.43 3.69
2341 2612 6.424207 ACGAAAATACTCTTTCAACACTCCTC 59.576 38.462 0.00 0.00 35.43 3.71
2342 2613 6.400091 CGAAAATACTCTTTCAACACTCCTCG 60.400 42.308 0.00 0.00 35.43 4.63
2343 2614 5.470047 AATACTCTTTCAACACTCCTCGT 57.530 39.130 0.00 0.00 0.00 4.18
2344 2615 3.372660 ACTCTTTCAACACTCCTCGTC 57.627 47.619 0.00 0.00 0.00 4.20
2345 2616 2.693591 ACTCTTTCAACACTCCTCGTCA 59.306 45.455 0.00 0.00 0.00 4.35
2346 2617 3.053455 CTCTTTCAACACTCCTCGTCAC 58.947 50.000 0.00 0.00 0.00 3.67
2347 2618 2.135933 CTTTCAACACTCCTCGTCACC 58.864 52.381 0.00 0.00 0.00 4.02
2348 2619 1.116308 TTCAACACTCCTCGTCACCA 58.884 50.000 0.00 0.00 0.00 4.17
2349 2620 0.387929 TCAACACTCCTCGTCACCAC 59.612 55.000 0.00 0.00 0.00 4.16
2350 2621 0.600255 CAACACTCCTCGTCACCACC 60.600 60.000 0.00 0.00 0.00 4.61
2351 2622 2.083835 AACACTCCTCGTCACCACCG 62.084 60.000 0.00 0.00 0.00 4.94
2352 2623 2.203451 ACTCCTCGTCACCACCGT 60.203 61.111 0.00 0.00 0.00 4.83
2353 2624 1.831286 ACTCCTCGTCACCACCGTT 60.831 57.895 0.00 0.00 0.00 4.44
2354 2625 0.538057 ACTCCTCGTCACCACCGTTA 60.538 55.000 0.00 0.00 0.00 3.18
2355 2626 0.599558 CTCCTCGTCACCACCGTTAA 59.400 55.000 0.00 0.00 0.00 2.01
2356 2627 0.599558 TCCTCGTCACCACCGTTAAG 59.400 55.000 0.00 0.00 0.00 1.85
2357 2628 0.599558 CCTCGTCACCACCGTTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
2358 2629 1.203994 CCTCGTCACCACCGTTAAGAT 59.796 52.381 0.00 0.00 0.00 2.40
2359 2630 2.424601 CCTCGTCACCACCGTTAAGATA 59.575 50.000 0.00 0.00 0.00 1.98
2360 2631 3.119388 CCTCGTCACCACCGTTAAGATAA 60.119 47.826 0.00 0.00 0.00 1.75
2361 2632 4.487948 CTCGTCACCACCGTTAAGATAAA 58.512 43.478 0.00 0.00 0.00 1.40
2362 2633 5.075858 TCGTCACCACCGTTAAGATAAAT 57.924 39.130 0.00 0.00 0.00 1.40
2363 2634 6.206395 TCGTCACCACCGTTAAGATAAATA 57.794 37.500 0.00 0.00 0.00 1.40
2364 2635 6.035843 TCGTCACCACCGTTAAGATAAATAC 58.964 40.000 0.00 0.00 0.00 1.89
2365 2636 5.232838 CGTCACCACCGTTAAGATAAATACC 59.767 44.000 0.00 0.00 0.00 2.73
2366 2637 6.108015 GTCACCACCGTTAAGATAAATACCA 58.892 40.000 0.00 0.00 0.00 3.25
2367 2638 6.594937 GTCACCACCGTTAAGATAAATACCAA 59.405 38.462 0.00 0.00 0.00 3.67
2368 2639 6.594937 TCACCACCGTTAAGATAAATACCAAC 59.405 38.462 0.00 0.00 0.00 3.77
2369 2640 6.596497 CACCACCGTTAAGATAAATACCAACT 59.404 38.462 0.00 0.00 0.00 3.16
2370 2641 7.120138 CACCACCGTTAAGATAAATACCAACTT 59.880 37.037 0.00 0.00 0.00 2.66
2371 2642 7.120138 ACCACCGTTAAGATAAATACCAACTTG 59.880 37.037 0.00 0.00 0.00 3.16
2372 2643 7.334921 CCACCGTTAAGATAAATACCAACTTGA 59.665 37.037 0.00 0.00 0.00 3.02
2373 2644 8.173130 CACCGTTAAGATAAATACCAACTTGAC 58.827 37.037 0.00 0.00 0.00 3.18
2374 2645 7.879160 ACCGTTAAGATAAATACCAACTTGACA 59.121 33.333 0.00 0.00 30.97 3.58
2375 2646 8.723311 CCGTTAAGATAAATACCAACTTGACAA 58.277 33.333 0.00 0.00 30.97 3.18
2376 2647 9.755064 CGTTAAGATAAATACCAACTTGACAAG 57.245 33.333 13.77 13.77 30.97 3.16
2377 2648 9.556030 GTTAAGATAAATACCAACTTGACAAGC 57.444 33.333 15.24 0.00 30.97 4.01
2378 2649 7.759489 AAGATAAATACCAACTTGACAAGCA 57.241 32.000 15.24 0.00 0.00 3.91
2379 2650 7.383102 AGATAAATACCAACTTGACAAGCAG 57.617 36.000 15.24 7.70 0.00 4.24
2380 2651 6.942576 AGATAAATACCAACTTGACAAGCAGT 59.057 34.615 15.24 11.89 0.00 4.40
2381 2652 8.100791 AGATAAATACCAACTTGACAAGCAGTA 58.899 33.333 15.24 13.53 0.00 2.74
2382 2653 8.807948 ATAAATACCAACTTGACAAGCAGTAT 57.192 30.769 15.24 14.99 0.00 2.12
2383 2654 6.500684 AATACCAACTTGACAAGCAGTATG 57.499 37.500 15.24 6.79 40.87 2.39
2384 2655 4.085357 ACCAACTTGACAAGCAGTATGA 57.915 40.909 15.24 0.00 39.69 2.15
2385 2656 3.815401 ACCAACTTGACAAGCAGTATGAC 59.185 43.478 15.24 0.00 39.69 3.06
2386 2657 3.814842 CCAACTTGACAAGCAGTATGACA 59.185 43.478 15.24 0.00 39.69 3.58
2387 2658 4.456911 CCAACTTGACAAGCAGTATGACAT 59.543 41.667 15.24 0.00 39.69 3.06
2388 2659 5.391310 CCAACTTGACAAGCAGTATGACATC 60.391 44.000 15.24 0.00 39.69 3.06
2389 2660 4.898320 ACTTGACAAGCAGTATGACATCA 58.102 39.130 15.24 0.00 39.69 3.07
2390 2661 5.308014 ACTTGACAAGCAGTATGACATCAA 58.692 37.500 15.24 0.00 39.69 2.57
2391 2662 5.942236 ACTTGACAAGCAGTATGACATCAAT 59.058 36.000 15.24 0.00 39.69 2.57
2392 2663 6.432162 ACTTGACAAGCAGTATGACATCAATT 59.568 34.615 15.24 0.00 39.69 2.32
2393 2664 6.185852 TGACAAGCAGTATGACATCAATTG 57.814 37.500 0.00 0.00 39.69 2.32
2394 2665 5.706833 TGACAAGCAGTATGACATCAATTGT 59.293 36.000 5.13 0.00 42.79 2.71
2395 2666 6.878389 TGACAAGCAGTATGACATCAATTGTA 59.122 34.615 5.13 0.00 39.18 2.41
2396 2667 7.553760 TGACAAGCAGTATGACATCAATTGTAT 59.446 33.333 5.13 0.00 39.18 2.29
2397 2668 8.962884 ACAAGCAGTATGACATCAATTGTATA 57.037 30.769 5.13 0.00 39.18 1.47
2398 2669 9.565090 ACAAGCAGTATGACATCAATTGTATAT 57.435 29.630 5.13 0.00 39.18 0.86
2431 2702 8.797350 ATGACTCTTTCAACAATATGACATCA 57.203 30.769 0.00 0.00 37.92 3.07
2432 2703 8.620116 TGACTCTTTCAACAATATGACATCAA 57.380 30.769 0.00 0.00 0.00 2.57
2433 2704 9.234827 TGACTCTTTCAACAATATGACATCAAT 57.765 29.630 0.00 0.00 0.00 2.57
2435 2706 9.850628 ACTCTTTCAACAATATGACATCAATTG 57.149 29.630 0.00 0.00 36.80 2.32
2436 2707 9.850628 CTCTTTCAACAATATGACATCAATTGT 57.149 29.630 9.76 9.76 43.74 2.71
2451 2722 9.121517 GACATCAATTGTATATAAGCAATGTGC 57.878 33.333 5.13 0.00 40.69 4.57
2452 2723 8.631797 ACATCAATTGTATATAAGCAATGTGCA 58.368 29.630 5.13 0.00 40.87 4.57
2465 2736 5.138800 GCAATGTGCAATGTCATCAATTC 57.861 39.130 0.00 0.00 44.26 2.17
2466 2737 4.868171 GCAATGTGCAATGTCATCAATTCT 59.132 37.500 0.00 0.00 44.26 2.40
2467 2738 5.220397 GCAATGTGCAATGTCATCAATTCTG 60.220 40.000 0.00 0.00 44.26 3.02
2468 2739 5.654603 ATGTGCAATGTCATCAATTCTGT 57.345 34.783 0.00 0.00 0.00 3.41
2469 2740 6.762702 ATGTGCAATGTCATCAATTCTGTA 57.237 33.333 0.00 0.00 0.00 2.74
2470 2741 6.762702 TGTGCAATGTCATCAATTCTGTAT 57.237 33.333 0.00 0.00 0.00 2.29
2471 2742 7.862512 TGTGCAATGTCATCAATTCTGTATA 57.137 32.000 0.00 0.00 0.00 1.47
2472 2743 8.278729 TGTGCAATGTCATCAATTCTGTATAA 57.721 30.769 0.00 0.00 0.00 0.98
2473 2744 8.400186 TGTGCAATGTCATCAATTCTGTATAAG 58.600 33.333 0.00 0.00 0.00 1.73
2474 2745 8.615211 GTGCAATGTCATCAATTCTGTATAAGA 58.385 33.333 0.00 0.00 0.00 2.10
2475 2746 8.615211 TGCAATGTCATCAATTCTGTATAAGAC 58.385 33.333 0.00 0.00 33.46 3.01
2476 2747 8.615211 GCAATGTCATCAATTCTGTATAAGACA 58.385 33.333 0.00 0.00 37.80 3.41
2480 2751 9.889128 TGTCATCAATTCTGTATAAGACATGAA 57.111 29.630 0.00 0.00 37.45 2.57
2482 2753 9.049523 TCATCAATTCTGTATAAGACATGAAGC 57.950 33.333 0.00 0.00 37.45 3.86
2483 2754 8.833493 CATCAATTCTGTATAAGACATGAAGCA 58.167 33.333 0.00 0.00 37.45 3.91
2484 2755 8.791327 TCAATTCTGTATAAGACATGAAGCAA 57.209 30.769 0.00 0.00 37.45 3.91
2485 2756 9.399797 TCAATTCTGTATAAGACATGAAGCAAT 57.600 29.630 0.00 0.00 37.45 3.56
2488 2759 7.792374 TCTGTATAAGACATGAAGCAATTCC 57.208 36.000 0.00 0.00 37.45 3.01
2489 2760 7.337938 TCTGTATAAGACATGAAGCAATTCCA 58.662 34.615 0.00 0.00 37.45 3.53
2490 2761 7.280876 TCTGTATAAGACATGAAGCAATTCCAC 59.719 37.037 0.00 0.00 37.45 4.02
2491 2762 6.883756 TGTATAAGACATGAAGCAATTCCACA 59.116 34.615 0.00 0.00 31.20 4.17
2492 2763 6.839124 ATAAGACATGAAGCAATTCCACAA 57.161 33.333 0.00 0.00 0.00 3.33
2493 2764 5.733620 AAGACATGAAGCAATTCCACAAT 57.266 34.783 0.00 0.00 0.00 2.71
2494 2765 5.733620 AGACATGAAGCAATTCCACAATT 57.266 34.783 0.00 0.00 31.91 2.32
2495 2766 5.717119 AGACATGAAGCAATTCCACAATTC 58.283 37.500 0.00 0.00 28.97 2.17
2496 2767 5.244402 AGACATGAAGCAATTCCACAATTCA 59.756 36.000 0.00 0.00 28.97 2.57
2497 2768 5.856156 ACATGAAGCAATTCCACAATTCAA 58.144 33.333 0.00 0.00 28.97 2.69
2498 2769 6.469410 ACATGAAGCAATTCCACAATTCAAT 58.531 32.000 0.00 0.00 28.97 2.57
2499 2770 6.370442 ACATGAAGCAATTCCACAATTCAATG 59.630 34.615 0.00 0.00 28.97 2.82
2500 2771 6.099159 TGAAGCAATTCCACAATTCAATGA 57.901 33.333 0.00 0.00 28.97 2.57
2501 2772 5.927689 TGAAGCAATTCCACAATTCAATGAC 59.072 36.000 0.00 0.00 28.97 3.06
2502 2773 5.471556 AGCAATTCCACAATTCAATGACA 57.528 34.783 0.00 0.00 28.97 3.58
2503 2774 6.045072 AGCAATTCCACAATTCAATGACAT 57.955 33.333 0.00 0.00 28.97 3.06
2504 2775 6.103997 AGCAATTCCACAATTCAATGACATC 58.896 36.000 0.00 0.00 28.97 3.06
2505 2776 5.870433 GCAATTCCACAATTCAATGACATCA 59.130 36.000 0.00 0.00 28.97 3.07
2506 2777 6.369340 GCAATTCCACAATTCAATGACATCAA 59.631 34.615 0.00 0.00 28.97 2.57
2507 2778 7.065324 GCAATTCCACAATTCAATGACATCAAT 59.935 33.333 0.00 0.00 28.97 2.57
2508 2779 8.600625 CAATTCCACAATTCAATGACATCAATC 58.399 33.333 0.00 0.00 28.97 2.67
2509 2780 6.837471 TCCACAATTCAATGACATCAATCA 57.163 33.333 0.00 0.00 0.00 2.57
2510 2781 6.859017 TCCACAATTCAATGACATCAATCAG 58.141 36.000 0.00 0.00 30.46 2.90
2511 2782 6.434965 TCCACAATTCAATGACATCAATCAGT 59.565 34.615 0.00 0.00 30.46 3.41
2512 2783 7.039574 TCCACAATTCAATGACATCAATCAGTT 60.040 33.333 0.00 0.00 30.46 3.16
2513 2784 7.062956 CCACAATTCAATGACATCAATCAGTTG 59.937 37.037 0.00 0.00 36.65 3.16
2514 2785 7.597369 CACAATTCAATGACATCAATCAGTTGT 59.403 33.333 0.00 0.00 36.69 3.32
2515 2786 8.795513 ACAATTCAATGACATCAATCAGTTGTA 58.204 29.630 0.00 0.00 36.69 2.41
2516 2787 9.797556 CAATTCAATGACATCAATCAGTTGTAT 57.202 29.630 0.00 0.00 36.69 2.29
2519 2790 8.437360 TCAATGACATCAATCAGTTGTATACC 57.563 34.615 0.00 0.00 36.69 2.73
2520 2791 8.046107 TCAATGACATCAATCAGTTGTATACCA 58.954 33.333 0.00 0.00 36.69 3.25
2521 2792 8.340443 CAATGACATCAATCAGTTGTATACCAG 58.660 37.037 0.00 0.00 36.69 4.00
2522 2793 6.348498 TGACATCAATCAGTTGTATACCAGG 58.652 40.000 0.00 0.00 36.69 4.45
2523 2794 5.684704 ACATCAATCAGTTGTATACCAGGG 58.315 41.667 0.00 0.00 36.69 4.45
2524 2795 5.191722 ACATCAATCAGTTGTATACCAGGGT 59.808 40.000 0.00 0.00 36.69 4.34
2525 2796 5.097742 TCAATCAGTTGTATACCAGGGTG 57.902 43.478 0.06 0.00 36.69 4.61
2526 2797 4.080582 TCAATCAGTTGTATACCAGGGTGG 60.081 45.833 0.06 0.00 38.86 4.61
2527 2798 3.193395 TCAGTTGTATACCAGGGTGGA 57.807 47.619 0.06 0.00 40.96 4.02
2528 2799 2.835764 TCAGTTGTATACCAGGGTGGAC 59.164 50.000 0.06 0.00 40.96 4.02
2529 2800 1.829222 AGTTGTATACCAGGGTGGACG 59.171 52.381 0.06 0.00 40.96 4.79
2530 2801 1.826720 GTTGTATACCAGGGTGGACGA 59.173 52.381 0.06 0.00 40.96 4.20
2531 2802 1.477553 TGTATACCAGGGTGGACGAC 58.522 55.000 0.06 0.00 40.96 4.34
2532 2803 1.272592 TGTATACCAGGGTGGACGACA 60.273 52.381 0.06 0.00 40.96 4.35
2542 2813 4.410743 GGACGACACGGTCCGGTC 62.411 72.222 17.28 17.66 46.36 4.79
2543 2814 4.410743 GACGACACGGTCCGGTCC 62.411 72.222 17.28 7.79 0.00 4.46
2597 2868 3.905678 CTCGGTCCTAGCCCGCTG 61.906 72.222 12.75 6.06 45.09 5.18
2598 2869 4.435970 TCGGTCCTAGCCCGCTGA 62.436 66.667 12.75 0.00 45.09 4.26
2599 2870 3.458163 CGGTCCTAGCCCGCTGAA 61.458 66.667 6.19 0.00 38.85 3.02
2600 2871 2.987125 GGTCCTAGCCCGCTGAAA 59.013 61.111 0.00 0.00 0.00 2.69
2601 2872 1.298667 GGTCCTAGCCCGCTGAAAA 59.701 57.895 0.00 0.00 0.00 2.29
2602 2873 0.322187 GGTCCTAGCCCGCTGAAAAA 60.322 55.000 0.00 0.00 0.00 1.94
2625 2896 4.069232 CCGGTCCGAGCTCAGCAA 62.069 66.667 14.39 0.00 0.00 3.91
2626 2897 2.048222 CGGTCCGAGCTCAGCAAA 60.048 61.111 15.40 0.00 0.00 3.68
2627 2898 2.383527 CGGTCCGAGCTCAGCAAAC 61.384 63.158 15.40 3.63 0.00 2.93
2628 2899 2.035442 GGTCCGAGCTCAGCAAACC 61.035 63.158 15.40 9.13 0.00 3.27
2629 2900 1.301716 GTCCGAGCTCAGCAAACCA 60.302 57.895 15.40 0.00 0.00 3.67
2630 2901 1.004560 TCCGAGCTCAGCAAACCAG 60.005 57.895 15.40 0.00 0.00 4.00
2631 2902 2.684843 CCGAGCTCAGCAAACCAGC 61.685 63.158 15.40 0.00 0.00 4.85
2632 2903 2.684843 CGAGCTCAGCAAACCAGCC 61.685 63.158 15.40 0.00 33.28 4.85
2633 2904 2.282745 AGCTCAGCAAACCAGCCC 60.283 61.111 0.00 0.00 33.28 5.19
2634 2905 3.741476 GCTCAGCAAACCAGCCCG 61.741 66.667 0.00 0.00 34.23 6.13
2635 2906 2.032528 CTCAGCAAACCAGCCCGA 59.967 61.111 0.00 0.00 34.23 5.14
2636 2907 2.281484 TCAGCAAACCAGCCCGAC 60.281 61.111 0.00 0.00 34.23 4.79
2637 2908 2.594303 CAGCAAACCAGCCCGACA 60.594 61.111 0.00 0.00 34.23 4.35
2638 2909 2.192861 CAGCAAACCAGCCCGACAA 61.193 57.895 0.00 0.00 34.23 3.18
2639 2910 1.454847 AGCAAACCAGCCCGACAAA 60.455 52.632 0.00 0.00 34.23 2.83
2640 2911 1.007387 GCAAACCAGCCCGACAAAG 60.007 57.895 0.00 0.00 0.00 2.77
2641 2912 1.007387 CAAACCAGCCCGACAAAGC 60.007 57.895 0.00 0.00 0.00 3.51
2642 2913 1.152756 AAACCAGCCCGACAAAGCT 60.153 52.632 0.00 0.00 40.89 3.74
2643 2914 0.755327 AAACCAGCCCGACAAAGCTT 60.755 50.000 0.00 0.00 37.18 3.74
2644 2915 1.172812 AACCAGCCCGACAAAGCTTC 61.173 55.000 0.00 0.00 37.18 3.86
2645 2916 2.680913 CCAGCCCGACAAAGCTTCG 61.681 63.158 0.00 0.00 37.18 3.79
2650 2921 3.156334 CGACAAAGCTTCGGTCCG 58.844 61.111 19.68 4.39 32.66 4.79
2651 2922 2.380410 CGACAAAGCTTCGGTCCGG 61.380 63.158 19.68 0.00 32.66 5.14
2652 2923 1.301479 GACAAAGCTTCGGTCCGGT 60.301 57.895 12.29 0.00 0.00 5.28
2653 2924 1.289800 GACAAAGCTTCGGTCCGGTC 61.290 60.000 12.29 5.14 0.00 4.79
2654 2925 2.033194 CAAAGCTTCGGTCCGGTCC 61.033 63.158 12.29 7.79 0.00 4.46
2665 2936 2.437180 CCGGTCCGGGCTTTAACC 60.437 66.667 23.59 0.98 44.15 2.85
2672 2943 4.289312 GGGCTTTAACCGAGCGAA 57.711 55.556 0.00 0.00 41.03 4.70
2673 2944 1.792301 GGGCTTTAACCGAGCGAAC 59.208 57.895 0.00 0.00 41.03 3.95
2674 2945 1.642037 GGGCTTTAACCGAGCGAACC 61.642 60.000 0.00 0.00 41.03 3.62
2675 2946 1.418755 GCTTTAACCGAGCGAACCG 59.581 57.895 0.00 0.00 0.00 4.44
2676 2947 1.010419 GCTTTAACCGAGCGAACCGA 61.010 55.000 0.00 0.00 0.00 4.69
2677 2948 0.712222 CTTTAACCGAGCGAACCGAC 59.288 55.000 0.00 0.00 0.00 4.79
2678 2949 1.003262 TTTAACCGAGCGAACCGACG 61.003 55.000 0.00 0.00 0.00 5.12
2679 2950 1.851021 TTAACCGAGCGAACCGACGA 61.851 55.000 0.00 0.00 35.09 4.20
2680 2951 2.244436 TAACCGAGCGAACCGACGAG 62.244 60.000 0.00 0.00 35.09 4.18
2682 2953 4.753877 CGAGCGAACCGACGAGCA 62.754 66.667 0.00 0.00 35.09 4.26
2683 2954 3.173240 GAGCGAACCGACGAGCAC 61.173 66.667 0.00 0.00 35.09 4.40
2686 2957 2.870161 CGAACCGACGAGCACGAG 60.870 66.667 11.40 3.67 42.66 4.18
2687 2958 3.173240 GAACCGACGAGCACGAGC 61.173 66.667 11.40 0.00 42.66 5.03
2698 2969 3.171987 CACGAGCTGTGGCATGAC 58.828 61.111 0.00 0.00 45.21 3.06
2699 2970 2.433145 ACGAGCTGTGGCATGACG 60.433 61.111 0.00 0.14 41.70 4.35
2700 2971 2.125952 CGAGCTGTGGCATGACGA 60.126 61.111 0.00 0.00 41.70 4.20
2701 2972 2.163390 CGAGCTGTGGCATGACGAG 61.163 63.158 0.00 0.00 41.70 4.18
2702 2973 1.216444 GAGCTGTGGCATGACGAGA 59.784 57.895 0.00 0.00 41.70 4.04
2703 2974 0.805322 GAGCTGTGGCATGACGAGAG 60.805 60.000 0.00 0.00 41.70 3.20
2704 2975 2.459442 GCTGTGGCATGACGAGAGC 61.459 63.158 0.00 0.07 36.26 4.09
2705 2976 1.079612 CTGTGGCATGACGAGAGCA 60.080 57.895 0.00 0.00 0.00 4.26
2706 2977 0.461516 CTGTGGCATGACGAGAGCAT 60.462 55.000 0.00 0.00 0.00 3.79
2707 2978 0.741927 TGTGGCATGACGAGAGCATG 60.742 55.000 0.00 0.00 43.58 4.06
2708 2979 1.153309 TGGCATGACGAGAGCATGG 60.153 57.895 0.00 0.00 42.14 3.66
2709 2980 3.020627 GCATGACGAGAGCATGGC 58.979 61.111 0.00 0.00 42.14 4.40
2710 2981 2.879070 GCATGACGAGAGCATGGCG 61.879 63.158 0.00 0.00 42.14 5.69
2711 2982 1.227060 CATGACGAGAGCATGGCGA 60.227 57.895 0.00 0.00 39.93 5.54
2712 2983 1.067084 ATGACGAGAGCATGGCGAG 59.933 57.895 0.00 0.00 0.00 5.03
2713 2984 1.387295 ATGACGAGAGCATGGCGAGA 61.387 55.000 0.00 0.00 0.00 4.04
2714 2985 1.299014 GACGAGAGCATGGCGAGAG 60.299 63.158 0.00 0.00 0.00 3.20
2733 3004 4.511246 ATGGCGGGGGCATGTCAG 62.511 66.667 0.00 0.00 46.89 3.51
2737 3008 4.838152 CGGGGGCATGTCAGGACG 62.838 72.222 0.00 0.00 0.00 4.79
2743 3014 3.190849 CATGTCAGGACGCGGCAG 61.191 66.667 17.00 5.60 0.00 4.85
2744 3015 4.457496 ATGTCAGGACGCGGCAGG 62.457 66.667 17.00 4.63 0.00 4.85
2765 3036 4.299796 GTGGAGGGGGCTTGCCAA 62.300 66.667 14.04 0.00 31.18 4.52
2766 3037 3.983420 TGGAGGGGGCTTGCCAAG 61.983 66.667 14.04 0.00 0.00 3.61
2767 3038 4.766632 GGAGGGGGCTTGCCAAGG 62.767 72.222 14.04 0.00 0.00 3.61
2768 3039 4.766632 GAGGGGGCTTGCCAAGGG 62.767 72.222 14.04 0.00 0.00 3.95
2778 3049 4.362476 GCCAAGGGCGTTGCAAGG 62.362 66.667 14.70 14.70 39.62 3.61
2779 3050 3.683937 CCAAGGGCGTTGCAAGGG 61.684 66.667 19.88 7.14 34.45 3.95
2780 3051 4.362476 CAAGGGCGTTGCAAGGGC 62.362 66.667 30.91 30.91 41.68 5.19
2836 3107 4.385405 GAGCGTGTGGCCAGAGCT 62.385 66.667 24.30 24.30 45.17 4.09
2837 3108 4.694233 AGCGTGTGGCCAGAGCTG 62.694 66.667 23.68 9.97 45.17 4.24
2840 3111 4.996434 GTGTGGCCAGAGCTGCGT 62.996 66.667 5.11 0.00 39.73 5.24
2841 3112 4.994471 TGTGGCCAGAGCTGCGTG 62.994 66.667 5.11 0.00 39.73 5.34
2921 3192 4.554036 GCCATCGGCCTCCCTGAC 62.554 72.222 0.00 0.00 44.06 3.51
2922 3193 4.227134 CCATCGGCCTCCCTGACG 62.227 72.222 0.00 0.00 0.00 4.35
2923 3194 4.899239 CATCGGCCTCCCTGACGC 62.899 72.222 0.00 0.00 0.00 5.19
2928 3199 3.706373 GCCTCCCTGACGCTGGAA 61.706 66.667 4.72 0.00 0.00 3.53
2929 3200 3.068881 CCTCCCTGACGCTGGAAA 58.931 61.111 4.72 0.00 0.00 3.13
2930 3201 1.078848 CCTCCCTGACGCTGGAAAG 60.079 63.158 4.72 2.83 0.00 2.62
2931 3202 1.743252 CTCCCTGACGCTGGAAAGC 60.743 63.158 4.72 0.00 0.00 3.51
2932 3203 2.032528 CCCTGACGCTGGAAAGCA 59.967 61.111 0.00 0.00 34.41 3.91
2933 3204 1.377725 CCCTGACGCTGGAAAGCAT 60.378 57.895 0.00 0.00 34.41 3.79
2934 3205 1.651240 CCCTGACGCTGGAAAGCATG 61.651 60.000 0.00 0.00 34.41 4.06
2935 3206 0.957395 CCTGACGCTGGAAAGCATGT 60.957 55.000 0.00 0.00 34.41 3.21
2936 3207 0.445436 CTGACGCTGGAAAGCATGTC 59.555 55.000 0.00 0.00 34.41 3.06
2937 3208 0.035317 TGACGCTGGAAAGCATGTCT 59.965 50.000 0.00 0.00 34.41 3.41
2938 3209 1.275010 TGACGCTGGAAAGCATGTCTA 59.725 47.619 0.00 0.00 34.41 2.59
2939 3210 1.929836 GACGCTGGAAAGCATGTCTAG 59.070 52.381 0.00 0.00 33.41 2.43
2940 3211 1.276421 ACGCTGGAAAGCATGTCTAGT 59.724 47.619 0.00 0.00 32.73 2.57
2941 3212 1.662629 CGCTGGAAAGCATGTCTAGTG 59.337 52.381 0.00 0.00 35.06 2.74
2942 3213 2.012673 GCTGGAAAGCATGTCTAGTGG 58.987 52.381 0.00 0.00 32.73 4.00
2943 3214 2.355108 GCTGGAAAGCATGTCTAGTGGA 60.355 50.000 0.00 0.00 32.73 4.02
2944 3215 3.683847 GCTGGAAAGCATGTCTAGTGGAT 60.684 47.826 0.00 0.00 32.73 3.41
2945 3216 3.875727 CTGGAAAGCATGTCTAGTGGATG 59.124 47.826 0.00 0.00 0.00 3.51
2946 3217 2.615912 GGAAAGCATGTCTAGTGGATGC 59.384 50.000 12.57 12.57 38.43 3.91
2947 3218 1.945387 AAGCATGTCTAGTGGATGCG 58.055 50.000 13.82 0.00 42.51 4.73
2948 3219 0.531532 AGCATGTCTAGTGGATGCGC 60.532 55.000 0.00 0.00 42.51 6.09
2949 3220 1.502163 GCATGTCTAGTGGATGCGCC 61.502 60.000 4.18 0.00 37.10 6.53
2950 3221 0.179076 CATGTCTAGTGGATGCGCCA 60.179 55.000 4.18 0.00 46.96 5.69
2958 3229 4.916293 GGATGCGCCATGCTCGGA 62.916 66.667 4.18 5.23 46.63 4.55
2959 3230 2.667536 GATGCGCCATGCTCGGAT 60.668 61.111 4.18 11.17 46.63 4.18
2960 3231 2.667536 ATGCGCCATGCTCGGATC 60.668 61.111 4.18 0.00 46.63 3.36
2961 3232 3.174507 ATGCGCCATGCTCGGATCT 62.175 57.895 4.18 0.00 46.63 2.75
2962 3233 1.820010 ATGCGCCATGCTCGGATCTA 61.820 55.000 4.18 0.00 46.63 1.98
2963 3234 1.079543 GCGCCATGCTCGGATCTAT 60.080 57.895 0.00 0.00 41.73 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
496 501 6.071840 GCGGGATTTATGTGTCTCTCTACTAT 60.072 42.308 0.00 0.00 0.00 2.12
782 858 3.947841 CTCCTCTCCTCGCTCGCG 61.948 72.222 0.00 0.00 41.35 5.87
785 861 0.179004 TGGATCTCCTCTCCTCGCTC 60.179 60.000 0.00 0.00 36.82 5.03
847 931 2.239907 GGGCTATAAATAGGGAGGGCAG 59.760 54.545 0.00 0.00 0.00 4.85
888 979 4.511527 GTGATGTGATGATCTGGTCTGTT 58.488 43.478 0.00 0.00 0.00 3.16
889 980 3.118482 GGTGATGTGATGATCTGGTCTGT 60.118 47.826 0.00 0.00 0.00 3.41
913 1016 2.110213 TGCTCGGTGGTGGTGAAC 59.890 61.111 0.00 0.00 0.00 3.18
914 1017 2.110213 GTGCTCGGTGGTGGTGAA 59.890 61.111 0.00 0.00 0.00 3.18
915 1018 2.842462 AGTGCTCGGTGGTGGTGA 60.842 61.111 0.00 0.00 0.00 4.02
916 1019 2.666190 CAGTGCTCGGTGGTGGTG 60.666 66.667 0.00 0.00 0.00 4.17
917 1020 4.626081 GCAGTGCTCGGTGGTGGT 62.626 66.667 8.18 0.00 0.00 4.16
942 1052 2.251818 CGGGTAGAGGATGGATGATGT 58.748 52.381 0.00 0.00 0.00 3.06
1092 1214 4.565850 GAGGCCGGGGAGGAGGAT 62.566 72.222 2.18 0.00 45.00 3.24
1432 1623 4.156622 CACTACGCGCTCGACGGA 62.157 66.667 5.73 0.00 43.93 4.69
1466 1705 1.560004 CCCAATGTGATCGATCGCCG 61.560 60.000 30.52 20.28 36.51 6.46
1497 1742 0.534412 CTGCAAGTCGTCAGGGAGAT 59.466 55.000 0.00 0.00 0.00 2.75
1603 1854 1.668294 CACCTCCGTCTGCTTGAGT 59.332 57.895 0.00 0.00 0.00 3.41
1767 2018 2.749441 GCTTGCAGGAGAGGCACC 60.749 66.667 0.00 0.00 41.75 5.01
1792 2043 3.148279 GAGGCGGAGGACGTGGAT 61.148 66.667 0.00 0.00 46.52 3.41
1881 2144 1.867233 CTCTGAACCCACACAAGAACG 59.133 52.381 0.00 0.00 0.00 3.95
1888 2151 0.600255 CGGTGTCTCTGAACCCACAC 60.600 60.000 0.00 0.00 38.76 3.82
2025 2296 4.637483 AGTTTGTGAGTTGTGACAATGG 57.363 40.909 0.00 0.00 32.27 3.16
2062 2333 7.136772 CGGAGAAAACGAAGGATTAAACTTTT 58.863 34.615 0.00 0.00 0.00 2.27
2159 2430 0.537143 GCATACATTCATCCCCGCCA 60.537 55.000 0.00 0.00 0.00 5.69
2188 2459 0.321564 TGTTGCTCGGTCCTCCATTG 60.322 55.000 0.00 0.00 0.00 2.82
2189 2460 0.400213 TTGTTGCTCGGTCCTCCATT 59.600 50.000 0.00 0.00 0.00 3.16
2190 2461 0.400213 TTTGTTGCTCGGTCCTCCAT 59.600 50.000 0.00 0.00 0.00 3.41
2191 2462 0.181587 TTTTGTTGCTCGGTCCTCCA 59.818 50.000 0.00 0.00 0.00 3.86
2192 2463 1.200020 CATTTTGTTGCTCGGTCCTCC 59.800 52.381 0.00 0.00 0.00 4.30
2193 2464 2.151202 TCATTTTGTTGCTCGGTCCTC 58.849 47.619 0.00 0.00 0.00 3.71
2194 2465 2.270352 TCATTTTGTTGCTCGGTCCT 57.730 45.000 0.00 0.00 0.00 3.85
2195 2466 2.351738 CCTTCATTTTGTTGCTCGGTCC 60.352 50.000 0.00 0.00 0.00 4.46
2196 2467 2.351738 CCCTTCATTTTGTTGCTCGGTC 60.352 50.000 0.00 0.00 0.00 4.79
2197 2468 1.613437 CCCTTCATTTTGTTGCTCGGT 59.387 47.619 0.00 0.00 0.00 4.69
2198 2469 1.613437 ACCCTTCATTTTGTTGCTCGG 59.387 47.619 0.00 0.00 0.00 4.63
2199 2470 2.034558 ACACCCTTCATTTTGTTGCTCG 59.965 45.455 0.00 0.00 0.00 5.03
2200 2471 3.383761 CACACCCTTCATTTTGTTGCTC 58.616 45.455 0.00 0.00 0.00 4.26
2201 2472 2.483538 GCACACCCTTCATTTTGTTGCT 60.484 45.455 0.00 0.00 0.00 3.91
2202 2473 1.866601 GCACACCCTTCATTTTGTTGC 59.133 47.619 0.00 0.00 0.00 4.17
2203 2474 2.865551 GTGCACACCCTTCATTTTGTTG 59.134 45.455 13.17 0.00 0.00 3.33
2204 2475 2.499289 TGTGCACACCCTTCATTTTGTT 59.501 40.909 17.42 0.00 0.00 2.83
2205 2476 2.106566 TGTGCACACCCTTCATTTTGT 58.893 42.857 17.42 0.00 0.00 2.83
2206 2477 2.472816 GTGTGCACACCCTTCATTTTG 58.527 47.619 34.94 0.00 40.85 2.44
2207 2478 2.888834 GTGTGCACACCCTTCATTTT 57.111 45.000 34.94 0.00 40.85 1.82
2250 2521 9.890629 TGATGATCACTTAAACTATTGCTTAGT 57.109 29.630 0.00 0.00 43.19 2.24
2268 2539 8.409371 GTTGAGAACTACTATGAGTGATGATCA 58.591 37.037 0.00 0.00 0.00 2.92
2269 2540 8.629158 AGTTGAGAACTACTATGAGTGATGATC 58.371 37.037 0.00 0.00 40.69 2.92
2270 2541 8.532186 AGTTGAGAACTACTATGAGTGATGAT 57.468 34.615 0.00 0.00 40.69 2.45
2271 2542 7.946381 AGTTGAGAACTACTATGAGTGATGA 57.054 36.000 0.00 0.00 40.69 2.92
2292 2563 9.878599 CGTCAATGAACTAGTGAAAAATAAGTT 57.121 29.630 0.00 0.00 34.82 2.66
2293 2564 9.268268 TCGTCAATGAACTAGTGAAAAATAAGT 57.732 29.630 0.00 0.00 34.82 2.24
2297 2568 9.965824 ATTTTCGTCAATGAACTAGTGAAAAAT 57.034 25.926 13.95 7.01 37.54 1.82
2299 2570 9.872757 GTATTTTCGTCAATGAACTAGTGAAAA 57.127 29.630 12.90 12.90 34.82 2.29
2300 2571 9.268268 AGTATTTTCGTCAATGAACTAGTGAAA 57.732 29.630 0.00 0.00 34.82 2.69
2301 2572 8.827177 AGTATTTTCGTCAATGAACTAGTGAA 57.173 30.769 0.00 0.00 34.82 3.18
2302 2573 8.304596 AGAGTATTTTCGTCAATGAACTAGTGA 58.695 33.333 0.00 0.00 0.00 3.41
2303 2574 8.467402 AGAGTATTTTCGTCAATGAACTAGTG 57.533 34.615 0.00 0.00 0.00 2.74
2304 2575 9.490379 AAAGAGTATTTTCGTCAATGAACTAGT 57.510 29.630 0.00 0.00 0.00 2.57
2305 2576 9.959775 GAAAGAGTATTTTCGTCAATGAACTAG 57.040 33.333 0.00 0.00 0.00 2.57
2306 2577 9.483916 TGAAAGAGTATTTTCGTCAATGAACTA 57.516 29.630 0.00 0.00 39.39 2.24
2307 2578 8.378172 TGAAAGAGTATTTTCGTCAATGAACT 57.622 30.769 0.00 0.00 39.39 3.01
2308 2579 8.892905 GTTGAAAGAGTATTTTCGTCAATGAAC 58.107 33.333 0.00 0.00 39.39 3.18
2309 2580 8.616942 TGTTGAAAGAGTATTTTCGTCAATGAA 58.383 29.630 0.00 0.00 39.39 2.57
2310 2581 8.067784 GTGTTGAAAGAGTATTTTCGTCAATGA 58.932 33.333 0.00 0.00 39.39 2.57
2311 2582 8.070171 AGTGTTGAAAGAGTATTTTCGTCAATG 58.930 33.333 0.00 0.00 39.39 2.82
2312 2583 8.154649 AGTGTTGAAAGAGTATTTTCGTCAAT 57.845 30.769 0.00 0.00 39.39 2.57
2313 2584 7.254658 GGAGTGTTGAAAGAGTATTTTCGTCAA 60.255 37.037 0.00 0.00 39.39 3.18
2314 2585 6.202188 GGAGTGTTGAAAGAGTATTTTCGTCA 59.798 38.462 0.00 0.00 39.39 4.35
2315 2586 6.424207 AGGAGTGTTGAAAGAGTATTTTCGTC 59.576 38.462 0.00 0.00 39.39 4.20
2316 2587 6.289064 AGGAGTGTTGAAAGAGTATTTTCGT 58.711 36.000 0.00 0.00 39.39 3.85
2317 2588 6.400091 CGAGGAGTGTTGAAAGAGTATTTTCG 60.400 42.308 0.00 0.00 39.39 3.46
2318 2589 6.424207 ACGAGGAGTGTTGAAAGAGTATTTTC 59.576 38.462 0.00 0.00 37.53 2.29
2319 2590 6.289064 ACGAGGAGTGTTGAAAGAGTATTTT 58.711 36.000 0.00 0.00 0.00 1.82
2320 2591 5.855045 ACGAGGAGTGTTGAAAGAGTATTT 58.145 37.500 0.00 0.00 0.00 1.40
2321 2592 5.010719 TGACGAGGAGTGTTGAAAGAGTATT 59.989 40.000 0.00 0.00 0.00 1.89
2322 2593 4.523173 TGACGAGGAGTGTTGAAAGAGTAT 59.477 41.667 0.00 0.00 0.00 2.12
2323 2594 3.887110 TGACGAGGAGTGTTGAAAGAGTA 59.113 43.478 0.00 0.00 0.00 2.59
2324 2595 2.693591 TGACGAGGAGTGTTGAAAGAGT 59.306 45.455 0.00 0.00 0.00 3.24
2325 2596 3.053455 GTGACGAGGAGTGTTGAAAGAG 58.947 50.000 0.00 0.00 0.00 2.85
2326 2597 2.223971 GGTGACGAGGAGTGTTGAAAGA 60.224 50.000 0.00 0.00 0.00 2.52
2327 2598 2.135933 GGTGACGAGGAGTGTTGAAAG 58.864 52.381 0.00 0.00 0.00 2.62
2328 2599 1.483004 TGGTGACGAGGAGTGTTGAAA 59.517 47.619 0.00 0.00 0.00 2.69
2329 2600 1.116308 TGGTGACGAGGAGTGTTGAA 58.884 50.000 0.00 0.00 0.00 2.69
2330 2601 0.387929 GTGGTGACGAGGAGTGTTGA 59.612 55.000 0.00 0.00 0.00 3.18
2331 2602 0.600255 GGTGGTGACGAGGAGTGTTG 60.600 60.000 0.00 0.00 0.00 3.33
2332 2603 1.746517 GGTGGTGACGAGGAGTGTT 59.253 57.895 0.00 0.00 0.00 3.32
2333 2604 2.561956 CGGTGGTGACGAGGAGTGT 61.562 63.158 0.00 0.00 0.00 3.55
2334 2605 2.083835 AACGGTGGTGACGAGGAGTG 62.084 60.000 0.00 0.00 34.93 3.51
2335 2606 0.538057 TAACGGTGGTGACGAGGAGT 60.538 55.000 0.00 0.00 34.93 3.85
2336 2607 0.599558 TTAACGGTGGTGACGAGGAG 59.400 55.000 0.00 0.00 34.93 3.69
2337 2608 0.599558 CTTAACGGTGGTGACGAGGA 59.400 55.000 0.00 0.00 34.93 3.71
2338 2609 0.599558 TCTTAACGGTGGTGACGAGG 59.400 55.000 0.00 0.00 34.93 4.63
2339 2610 2.649331 ATCTTAACGGTGGTGACGAG 57.351 50.000 0.00 0.00 34.93 4.18
2340 2611 4.517952 TTTATCTTAACGGTGGTGACGA 57.482 40.909 0.00 0.00 34.93 4.20
2341 2612 5.232838 GGTATTTATCTTAACGGTGGTGACG 59.767 44.000 0.00 0.00 37.36 4.35
2342 2613 6.108015 TGGTATTTATCTTAACGGTGGTGAC 58.892 40.000 0.00 0.00 0.00 3.67
2343 2614 6.297080 TGGTATTTATCTTAACGGTGGTGA 57.703 37.500 0.00 0.00 0.00 4.02
2344 2615 6.596497 AGTTGGTATTTATCTTAACGGTGGTG 59.404 38.462 0.00 0.00 0.00 4.17
2345 2616 6.714278 AGTTGGTATTTATCTTAACGGTGGT 58.286 36.000 0.00 0.00 0.00 4.16
2346 2617 7.334921 TCAAGTTGGTATTTATCTTAACGGTGG 59.665 37.037 2.34 0.00 0.00 4.61
2347 2618 8.173130 GTCAAGTTGGTATTTATCTTAACGGTG 58.827 37.037 2.34 0.00 0.00 4.94
2348 2619 7.879160 TGTCAAGTTGGTATTTATCTTAACGGT 59.121 33.333 2.34 0.00 0.00 4.83
2349 2620 8.259049 TGTCAAGTTGGTATTTATCTTAACGG 57.741 34.615 2.34 0.00 0.00 4.44
2350 2621 9.755064 CTTGTCAAGTTGGTATTTATCTTAACG 57.245 33.333 4.27 0.00 0.00 3.18
2351 2622 9.556030 GCTTGTCAAGTTGGTATTTATCTTAAC 57.444 33.333 14.03 0.00 0.00 2.01
2352 2623 9.290988 TGCTTGTCAAGTTGGTATTTATCTTAA 57.709 29.630 14.03 0.00 0.00 1.85
2353 2624 8.856153 TGCTTGTCAAGTTGGTATTTATCTTA 57.144 30.769 14.03 0.00 0.00 2.10
2354 2625 7.448469 ACTGCTTGTCAAGTTGGTATTTATCTT 59.552 33.333 14.03 0.00 0.00 2.40
2355 2626 6.942576 ACTGCTTGTCAAGTTGGTATTTATCT 59.057 34.615 14.03 0.00 0.00 1.98
2356 2627 7.145932 ACTGCTTGTCAAGTTGGTATTTATC 57.854 36.000 14.03 0.00 0.00 1.75
2357 2628 8.677300 CATACTGCTTGTCAAGTTGGTATTTAT 58.323 33.333 14.03 0.10 0.00 1.40
2358 2629 7.880713 TCATACTGCTTGTCAAGTTGGTATTTA 59.119 33.333 14.03 7.84 0.00 1.40
2359 2630 6.714810 TCATACTGCTTGTCAAGTTGGTATTT 59.285 34.615 14.03 0.15 0.00 1.40
2360 2631 6.149474 GTCATACTGCTTGTCAAGTTGGTATT 59.851 38.462 14.03 3.89 0.00 1.89
2361 2632 5.643777 GTCATACTGCTTGTCAAGTTGGTAT 59.356 40.000 14.03 14.69 0.00 2.73
2362 2633 4.994852 GTCATACTGCTTGTCAAGTTGGTA 59.005 41.667 14.03 13.35 0.00 3.25
2363 2634 3.815401 GTCATACTGCTTGTCAAGTTGGT 59.185 43.478 14.03 11.86 0.00 3.67
2364 2635 3.814842 TGTCATACTGCTTGTCAAGTTGG 59.185 43.478 14.03 7.13 0.00 3.77
2365 2636 5.179929 TGATGTCATACTGCTTGTCAAGTTG 59.820 40.000 14.03 9.36 0.00 3.16
2366 2637 5.308014 TGATGTCATACTGCTTGTCAAGTT 58.692 37.500 14.03 2.17 0.00 2.66
2367 2638 4.898320 TGATGTCATACTGCTTGTCAAGT 58.102 39.130 14.03 0.00 0.00 3.16
2368 2639 5.868043 TTGATGTCATACTGCTTGTCAAG 57.132 39.130 8.31 8.31 0.00 3.02
2369 2640 6.207221 ACAATTGATGTCATACTGCTTGTCAA 59.793 34.615 13.59 0.00 37.96 3.18
2370 2641 5.706833 ACAATTGATGTCATACTGCTTGTCA 59.293 36.000 13.59 0.00 37.96 3.58
2371 2642 6.187125 ACAATTGATGTCATACTGCTTGTC 57.813 37.500 13.59 0.00 37.96 3.18
2372 2643 7.870509 ATACAATTGATGTCATACTGCTTGT 57.129 32.000 13.59 0.00 42.70 3.16
2405 2676 9.889128 TGATGTCATATTGTTGAAAGAGTCATA 57.111 29.630 0.00 0.00 35.70 2.15
2406 2677 8.797350 TGATGTCATATTGTTGAAAGAGTCAT 57.203 30.769 0.00 0.00 35.70 3.06
2407 2678 8.620116 TTGATGTCATATTGTTGAAAGAGTCA 57.380 30.769 0.00 0.00 0.00 3.41
2409 2680 9.850628 CAATTGATGTCATATTGTTGAAAGAGT 57.149 29.630 0.00 0.00 0.00 3.24
2410 2681 9.850628 ACAATTGATGTCATATTGTTGAAAGAG 57.149 29.630 13.59 0.00 37.96 2.85
2425 2696 9.121517 GCACATTGCTTATATACAATTGATGTC 57.878 33.333 13.59 0.00 40.23 3.06
2426 2697 8.631797 TGCACATTGCTTATATACAATTGATGT 58.368 29.630 13.59 4.43 45.31 3.06
2427 2698 9.465985 TTGCACATTGCTTATATACAATTGATG 57.534 29.630 13.59 3.78 45.31 3.07
2429 2700 9.465985 CATTGCACATTGCTTATATACAATTGA 57.534 29.630 13.59 0.00 45.31 2.57
2430 2701 9.251792 ACATTGCACATTGCTTATATACAATTG 57.748 29.630 3.24 3.24 45.31 2.32
2431 2702 9.467258 GACATTGCACATTGCTTATATACAATT 57.533 29.630 0.00 0.00 45.31 2.32
2432 2703 8.631797 TGACATTGCACATTGCTTATATACAAT 58.368 29.630 0.00 0.00 45.31 2.71
2433 2704 7.994194 TGACATTGCACATTGCTTATATACAA 58.006 30.769 0.00 0.00 45.31 2.41
2434 2705 7.565323 TGACATTGCACATTGCTTATATACA 57.435 32.000 0.00 0.00 45.31 2.29
2435 2706 8.291740 TGATGACATTGCACATTGCTTATATAC 58.708 33.333 0.00 0.00 45.31 1.47
2436 2707 8.393671 TGATGACATTGCACATTGCTTATATA 57.606 30.769 0.00 0.00 45.31 0.86
2437 2708 7.279750 TGATGACATTGCACATTGCTTATAT 57.720 32.000 0.00 0.00 45.31 0.86
2438 2709 6.696441 TGATGACATTGCACATTGCTTATA 57.304 33.333 0.00 0.00 45.31 0.98
2439 2710 5.585820 TGATGACATTGCACATTGCTTAT 57.414 34.783 0.00 0.00 45.31 1.73
2440 2711 5.388408 TTGATGACATTGCACATTGCTTA 57.612 34.783 0.00 0.00 45.31 3.09
2441 2712 3.945981 TGATGACATTGCACATTGCTT 57.054 38.095 0.00 0.00 45.31 3.91
2442 2713 3.945981 TTGATGACATTGCACATTGCT 57.054 38.095 0.00 0.00 45.31 3.91
2443 2714 4.868171 AGAATTGATGACATTGCACATTGC 59.132 37.500 0.00 0.00 45.29 3.56
2444 2715 5.867174 ACAGAATTGATGACATTGCACATTG 59.133 36.000 0.00 0.00 0.00 2.82
2445 2716 6.032956 ACAGAATTGATGACATTGCACATT 57.967 33.333 0.00 0.00 0.00 2.71
2446 2717 5.654603 ACAGAATTGATGACATTGCACAT 57.345 34.783 0.00 0.00 0.00 3.21
2447 2718 6.762702 ATACAGAATTGATGACATTGCACA 57.237 33.333 0.00 0.00 0.00 4.57
2448 2719 8.615211 TCTTATACAGAATTGATGACATTGCAC 58.385 33.333 0.00 0.00 0.00 4.57
2449 2720 8.615211 GTCTTATACAGAATTGATGACATTGCA 58.385 33.333 0.00 0.00 31.28 4.08
2450 2721 8.615211 TGTCTTATACAGAATTGATGACATTGC 58.385 33.333 0.00 0.00 31.28 3.56
2454 2725 9.889128 TTCATGTCTTATACAGAATTGATGACA 57.111 29.630 0.00 0.00 42.70 3.58
2456 2727 9.049523 GCTTCATGTCTTATACAGAATTGATGA 57.950 33.333 0.00 0.00 42.70 2.92
2457 2728 8.833493 TGCTTCATGTCTTATACAGAATTGATG 58.167 33.333 0.00 0.00 42.70 3.07
2458 2729 8.969260 TGCTTCATGTCTTATACAGAATTGAT 57.031 30.769 0.00 0.00 42.70 2.57
2459 2730 8.791327 TTGCTTCATGTCTTATACAGAATTGA 57.209 30.769 0.00 0.00 42.70 2.57
2462 2733 8.844244 GGAATTGCTTCATGTCTTATACAGAAT 58.156 33.333 0.00 0.00 42.70 2.40
2463 2734 7.828717 TGGAATTGCTTCATGTCTTATACAGAA 59.171 33.333 0.00 0.00 42.70 3.02
2464 2735 7.280876 GTGGAATTGCTTCATGTCTTATACAGA 59.719 37.037 0.00 0.00 42.70 3.41
2465 2736 7.066163 TGTGGAATTGCTTCATGTCTTATACAG 59.934 37.037 0.00 0.00 42.70 2.74
2466 2737 6.883756 TGTGGAATTGCTTCATGTCTTATACA 59.116 34.615 0.00 0.00 43.86 2.29
2467 2738 7.320443 TGTGGAATTGCTTCATGTCTTATAC 57.680 36.000 0.00 0.00 32.70 1.47
2468 2739 7.936496 TTGTGGAATTGCTTCATGTCTTATA 57.064 32.000 0.00 0.00 32.70 0.98
2469 2740 6.839124 TTGTGGAATTGCTTCATGTCTTAT 57.161 33.333 0.00 0.00 32.70 1.73
2470 2741 6.839124 ATTGTGGAATTGCTTCATGTCTTA 57.161 33.333 0.00 0.00 32.70 2.10
2471 2742 5.733620 ATTGTGGAATTGCTTCATGTCTT 57.266 34.783 0.00 0.00 32.70 3.01
2472 2743 5.244402 TGAATTGTGGAATTGCTTCATGTCT 59.756 36.000 0.00 0.00 31.58 3.41
2473 2744 5.472148 TGAATTGTGGAATTGCTTCATGTC 58.528 37.500 0.00 0.44 31.58 3.06
2474 2745 5.471556 TGAATTGTGGAATTGCTTCATGT 57.528 34.783 0.00 0.00 31.58 3.21
2475 2746 6.592220 TCATTGAATTGTGGAATTGCTTCATG 59.408 34.615 0.00 0.00 31.58 3.07
2476 2747 6.592607 GTCATTGAATTGTGGAATTGCTTCAT 59.407 34.615 0.00 0.00 31.58 2.57
2477 2748 5.927689 GTCATTGAATTGTGGAATTGCTTCA 59.072 36.000 0.00 0.00 31.58 3.02
2478 2749 5.927689 TGTCATTGAATTGTGGAATTGCTTC 59.072 36.000 0.00 0.00 31.58 3.86
2479 2750 5.856156 TGTCATTGAATTGTGGAATTGCTT 58.144 33.333 0.00 0.00 31.58 3.91
2480 2751 5.471556 TGTCATTGAATTGTGGAATTGCT 57.528 34.783 0.00 0.00 31.58 3.91
2481 2752 5.870433 TGATGTCATTGAATTGTGGAATTGC 59.130 36.000 0.00 0.00 31.58 3.56
2482 2753 7.892778 TTGATGTCATTGAATTGTGGAATTG 57.107 32.000 0.00 0.00 31.58 2.32
2483 2754 8.315482 TGATTGATGTCATTGAATTGTGGAATT 58.685 29.630 0.00 0.00 34.29 2.17
2484 2755 7.842982 TGATTGATGTCATTGAATTGTGGAAT 58.157 30.769 0.00 0.00 0.00 3.01
2485 2756 7.039574 ACTGATTGATGTCATTGAATTGTGGAA 60.040 33.333 0.00 0.00 0.00 3.53
2486 2757 6.434965 ACTGATTGATGTCATTGAATTGTGGA 59.565 34.615 0.00 0.00 0.00 4.02
2487 2758 6.627243 ACTGATTGATGTCATTGAATTGTGG 58.373 36.000 0.00 0.00 0.00 4.17
2488 2759 7.597369 ACAACTGATTGATGTCATTGAATTGTG 59.403 33.333 0.00 0.00 39.30 3.33
2489 2760 7.663827 ACAACTGATTGATGTCATTGAATTGT 58.336 30.769 0.00 0.00 39.30 2.71
2490 2761 9.797556 ATACAACTGATTGATGTCATTGAATTG 57.202 29.630 0.00 0.00 39.30 2.32
2493 2764 8.892723 GGTATACAACTGATTGATGTCATTGAA 58.107 33.333 5.01 0.00 39.30 2.69
2494 2765 8.046107 TGGTATACAACTGATTGATGTCATTGA 58.954 33.333 5.01 0.00 39.30 2.57
2495 2766 8.212317 TGGTATACAACTGATTGATGTCATTG 57.788 34.615 5.01 0.00 39.30 2.82
2496 2767 7.500227 CCTGGTATACAACTGATTGATGTCATT 59.500 37.037 5.01 0.00 39.30 2.57
2497 2768 6.994496 CCTGGTATACAACTGATTGATGTCAT 59.006 38.462 5.01 0.00 39.30 3.06
2498 2769 6.348498 CCTGGTATACAACTGATTGATGTCA 58.652 40.000 5.01 0.00 39.30 3.58
2499 2770 5.760253 CCCTGGTATACAACTGATTGATGTC 59.240 44.000 5.01 0.00 39.30 3.06
2500 2771 5.191722 ACCCTGGTATACAACTGATTGATGT 59.808 40.000 5.01 0.00 39.30 3.06
2501 2772 5.528690 CACCCTGGTATACAACTGATTGATG 59.471 44.000 5.01 0.00 39.30 3.07
2502 2773 5.397899 CCACCCTGGTATACAACTGATTGAT 60.398 44.000 5.01 0.00 34.35 2.57
2503 2774 4.080582 CCACCCTGGTATACAACTGATTGA 60.081 45.833 5.01 0.00 34.35 2.57
2504 2775 4.080582 TCCACCCTGGTATACAACTGATTG 60.081 45.833 5.01 0.00 39.03 2.67
2505 2776 4.080526 GTCCACCCTGGTATACAACTGATT 60.081 45.833 5.01 0.00 39.03 2.57
2506 2777 3.454812 GTCCACCCTGGTATACAACTGAT 59.545 47.826 5.01 0.00 39.03 2.90
2507 2778 2.835764 GTCCACCCTGGTATACAACTGA 59.164 50.000 5.01 0.00 39.03 3.41
2508 2779 2.418197 CGTCCACCCTGGTATACAACTG 60.418 54.545 5.01 0.00 39.03 3.16
2509 2780 1.829222 CGTCCACCCTGGTATACAACT 59.171 52.381 5.01 0.00 39.03 3.16
2510 2781 1.826720 TCGTCCACCCTGGTATACAAC 59.173 52.381 5.01 0.00 39.03 3.32
2511 2782 1.826720 GTCGTCCACCCTGGTATACAA 59.173 52.381 5.01 0.00 39.03 2.41
2512 2783 1.272592 TGTCGTCCACCCTGGTATACA 60.273 52.381 5.01 0.00 39.03 2.29
2513 2784 1.135721 GTGTCGTCCACCCTGGTATAC 59.864 57.143 0.00 0.00 39.03 1.47
2514 2785 1.477553 GTGTCGTCCACCCTGGTATA 58.522 55.000 0.00 0.00 39.03 1.47
2515 2786 1.601419 CGTGTCGTCCACCCTGGTAT 61.601 60.000 0.00 0.00 41.26 2.73
2516 2787 2.270257 CGTGTCGTCCACCCTGGTA 61.270 63.158 0.00 0.00 41.26 3.25
2517 2788 3.612681 CGTGTCGTCCACCCTGGT 61.613 66.667 0.00 0.00 41.26 4.00
2518 2789 4.373116 CCGTGTCGTCCACCCTGG 62.373 72.222 3.10 0.00 41.26 4.45
2519 2790 3.569049 GACCGTGTCGTCCACCCTG 62.569 68.421 3.10 0.00 41.26 4.45
2520 2791 3.300765 GACCGTGTCGTCCACCCT 61.301 66.667 3.10 0.00 41.26 4.34
2526 2797 4.410743 GGACCGGACCGTGTCGTC 62.411 72.222 21.55 16.94 32.65 4.20
2583 2854 0.322187 TTTTTCAGCGGGCTAGGACC 60.322 55.000 0.00 0.00 0.00 4.46
2584 2855 3.243128 TTTTTCAGCGGGCTAGGAC 57.757 52.632 0.00 0.00 0.00 3.85
2608 2879 3.589654 TTTGCTGAGCTCGGACCGG 62.590 63.158 27.04 0.00 0.00 5.28
2609 2880 2.048222 TTTGCTGAGCTCGGACCG 60.048 61.111 27.04 7.84 0.00 4.79
2610 2881 2.035442 GGTTTGCTGAGCTCGGACC 61.035 63.158 27.04 19.97 0.00 4.46
2611 2882 1.294659 CTGGTTTGCTGAGCTCGGAC 61.295 60.000 27.04 17.04 0.00 4.79
2612 2883 1.004560 CTGGTTTGCTGAGCTCGGA 60.005 57.895 27.04 11.11 0.00 4.55
2613 2884 2.684843 GCTGGTTTGCTGAGCTCGG 61.685 63.158 18.77 18.77 0.00 4.63
2614 2885 2.684843 GGCTGGTTTGCTGAGCTCG 61.685 63.158 9.64 5.21 33.03 5.03
2615 2886 2.338785 GGGCTGGTTTGCTGAGCTC 61.339 63.158 6.82 6.82 33.03 4.09
2616 2887 2.282745 GGGCTGGTTTGCTGAGCT 60.283 61.111 5.83 0.00 33.03 4.09
2617 2888 3.741476 CGGGCTGGTTTGCTGAGC 61.741 66.667 0.00 0.00 0.00 4.26
2618 2889 2.032528 TCGGGCTGGTTTGCTGAG 59.967 61.111 0.00 0.00 0.00 3.35
2619 2890 2.281484 GTCGGGCTGGTTTGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
2620 2891 1.733402 TTTGTCGGGCTGGTTTGCTG 61.733 55.000 0.00 0.00 0.00 4.41
2621 2892 1.454847 TTTGTCGGGCTGGTTTGCT 60.455 52.632 0.00 0.00 0.00 3.91
2622 2893 1.007387 CTTTGTCGGGCTGGTTTGC 60.007 57.895 0.00 0.00 0.00 3.68
2623 2894 1.007387 GCTTTGTCGGGCTGGTTTG 60.007 57.895 0.00 0.00 0.00 2.93
2624 2895 0.755327 AAGCTTTGTCGGGCTGGTTT 60.755 50.000 0.00 0.00 38.91 3.27
2625 2896 1.152756 AAGCTTTGTCGGGCTGGTT 60.153 52.632 0.00 0.00 38.91 3.67
2626 2897 1.600916 GAAGCTTTGTCGGGCTGGT 60.601 57.895 0.00 0.00 38.91 4.00
2627 2898 2.680913 CGAAGCTTTGTCGGGCTGG 61.681 63.158 0.00 0.00 38.91 4.85
2628 2899 2.863153 CGAAGCTTTGTCGGGCTG 59.137 61.111 0.00 0.00 38.91 4.85
2633 2904 2.380410 CCGGACCGAAGCTTTGTCG 61.380 63.158 17.49 15.11 38.24 4.35
2634 2905 1.289800 GACCGGACCGAAGCTTTGTC 61.290 60.000 17.49 17.30 0.00 3.18
2635 2906 1.301479 GACCGGACCGAAGCTTTGT 60.301 57.895 17.49 7.57 0.00 2.83
2636 2907 2.033194 GGACCGGACCGAAGCTTTG 61.033 63.158 17.49 6.73 0.00 2.77
2637 2908 2.346365 GGACCGGACCGAAGCTTT 59.654 61.111 17.49 0.00 0.00 3.51
2650 2921 1.449070 CTCGGTTAAAGCCCGGACC 60.449 63.158 0.73 0.00 45.51 4.46
2651 2922 2.104859 GCTCGGTTAAAGCCCGGAC 61.105 63.158 0.73 0.00 45.51 4.79
2652 2923 2.266689 GCTCGGTTAAAGCCCGGA 59.733 61.111 0.73 0.00 45.51 5.14
2653 2924 3.192922 CGCTCGGTTAAAGCCCGG 61.193 66.667 0.00 0.00 45.51 5.73
2654 2925 1.738830 TTCGCTCGGTTAAAGCCCG 60.739 57.895 0.00 0.00 46.83 6.13
2655 2926 1.642037 GGTTCGCTCGGTTAAAGCCC 61.642 60.000 0.00 0.00 36.36 5.19
2656 2927 1.792301 GGTTCGCTCGGTTAAAGCC 59.208 57.895 0.00 0.00 36.36 4.35
2657 2928 1.010419 TCGGTTCGCTCGGTTAAAGC 61.010 55.000 0.00 0.00 36.38 3.51
2658 2929 0.712222 GTCGGTTCGCTCGGTTAAAG 59.288 55.000 0.00 0.00 0.00 1.85
2659 2930 1.003262 CGTCGGTTCGCTCGGTTAAA 61.003 55.000 0.00 0.00 0.00 1.52
2660 2931 1.442520 CGTCGGTTCGCTCGGTTAA 60.443 57.895 0.00 0.00 0.00 2.01
2661 2932 2.176546 CGTCGGTTCGCTCGGTTA 59.823 61.111 0.00 0.00 0.00 2.85
2662 2933 3.606065 CTCGTCGGTTCGCTCGGTT 62.606 63.158 0.00 0.00 0.00 4.44
2663 2934 4.099170 CTCGTCGGTTCGCTCGGT 62.099 66.667 0.00 0.00 0.00 4.69
2665 2936 4.753877 TGCTCGTCGGTTCGCTCG 62.754 66.667 0.00 0.00 0.00 5.03
2666 2937 3.173240 GTGCTCGTCGGTTCGCTC 61.173 66.667 0.00 0.00 0.00 5.03
2669 2940 2.870161 CTCGTGCTCGTCGGTTCG 60.870 66.667 8.17 0.00 38.33 3.95
2670 2941 3.173240 GCTCGTGCTCGTCGGTTC 61.173 66.667 8.17 0.00 38.33 3.62
2680 2951 2.743538 TCATGCCACAGCTCGTGC 60.744 61.111 0.07 0.07 44.91 5.34
2681 2952 2.733671 CGTCATGCCACAGCTCGTG 61.734 63.158 8.73 8.73 45.92 4.35
2682 2953 2.433145 CGTCATGCCACAGCTCGT 60.433 61.111 0.00 0.00 40.80 4.18
2683 2954 2.125952 TCGTCATGCCACAGCTCG 60.126 61.111 0.00 0.00 40.80 5.03
2684 2955 0.805322 CTCTCGTCATGCCACAGCTC 60.805 60.000 0.00 0.00 40.80 4.09
2685 2956 1.217511 CTCTCGTCATGCCACAGCT 59.782 57.895 0.00 0.00 40.80 4.24
2686 2957 2.459442 GCTCTCGTCATGCCACAGC 61.459 63.158 0.00 0.00 40.48 4.40
2687 2958 0.461516 ATGCTCTCGTCATGCCACAG 60.462 55.000 0.00 0.00 0.00 3.66
2688 2959 0.741927 CATGCTCTCGTCATGCCACA 60.742 55.000 0.00 0.00 35.48 4.17
2689 2960 1.434622 CCATGCTCTCGTCATGCCAC 61.435 60.000 0.00 0.00 39.83 5.01
2690 2961 1.153309 CCATGCTCTCGTCATGCCA 60.153 57.895 0.00 0.00 39.83 4.92
2691 2962 2.541120 GCCATGCTCTCGTCATGCC 61.541 63.158 0.00 0.00 39.83 4.40
2692 2963 2.879070 CGCCATGCTCTCGTCATGC 61.879 63.158 0.00 0.00 39.83 4.06
2693 2964 1.213733 CTCGCCATGCTCTCGTCATG 61.214 60.000 0.00 0.00 40.60 3.07
2694 2965 1.067084 CTCGCCATGCTCTCGTCAT 59.933 57.895 0.00 0.00 0.00 3.06
2695 2966 1.997928 CTCTCGCCATGCTCTCGTCA 61.998 60.000 0.00 0.00 0.00 4.35
2696 2967 1.299014 CTCTCGCCATGCTCTCGTC 60.299 63.158 0.00 0.00 0.00 4.20
2697 2968 2.804167 CTCTCGCCATGCTCTCGT 59.196 61.111 0.00 0.00 0.00 4.18
2698 2969 2.657944 GCTCTCGCCATGCTCTCG 60.658 66.667 0.00 0.00 0.00 4.04
2699 2970 1.069427 ATGCTCTCGCCATGCTCTC 59.931 57.895 0.00 0.00 34.43 3.20
2700 2971 1.227586 CATGCTCTCGCCATGCTCT 60.228 57.895 0.00 0.00 34.43 4.09
2701 2972 2.252346 CCATGCTCTCGCCATGCTC 61.252 63.158 0.00 0.00 34.43 4.26
2702 2973 2.203167 CCATGCTCTCGCCATGCT 60.203 61.111 0.00 0.00 34.43 3.79
2703 2974 3.962421 GCCATGCTCTCGCCATGC 61.962 66.667 0.00 0.00 34.43 4.06
2704 2975 3.646976 CGCCATGCTCTCGCCATG 61.647 66.667 0.00 0.00 34.43 3.66
2705 2976 4.923942 CCGCCATGCTCTCGCCAT 62.924 66.667 0.00 0.00 34.43 4.40
2715 2986 4.818863 TGACATGCCCCCGCCATG 62.819 66.667 0.00 0.00 32.84 3.66
2716 2987 4.511246 CTGACATGCCCCCGCCAT 62.511 66.667 0.00 0.00 0.00 4.40
2720 2991 4.838152 CGTCCTGACATGCCCCCG 62.838 72.222 0.00 0.00 0.00 5.73
2726 2997 3.190849 CTGCCGCGTCCTGACATG 61.191 66.667 4.92 0.00 0.00 3.21
2727 2998 4.457496 CCTGCCGCGTCCTGACAT 62.457 66.667 4.92 0.00 0.00 3.06
2748 3019 4.299796 TTGGCAAGCCCCCTCCAC 62.300 66.667 8.89 0.00 34.56 4.02
2749 3020 3.983420 CTTGGCAAGCCCCCTCCA 61.983 66.667 15.25 0.00 34.56 3.86
2750 3021 4.766632 CCTTGGCAAGCCCCCTCC 62.767 72.222 21.77 0.00 34.56 4.30
2751 3022 4.766632 CCCTTGGCAAGCCCCCTC 62.767 72.222 21.77 0.00 34.56 4.30
2761 3032 4.362476 CCTTGCAACGCCCTTGGC 62.362 66.667 0.00 0.00 46.75 4.52
2762 3033 3.683937 CCCTTGCAACGCCCTTGG 61.684 66.667 0.00 0.00 0.00 3.61
2763 3034 4.362476 GCCCTTGCAACGCCCTTG 62.362 66.667 0.00 0.00 37.47 3.61
2819 3090 4.385405 AGCTCTGGCCACACGCTC 62.385 66.667 0.00 0.00 39.73 5.03
2820 3091 4.694233 CAGCTCTGGCCACACGCT 62.694 66.667 0.00 7.15 39.73 5.07
2823 3094 4.996434 ACGCAGCTCTGGCCACAC 62.996 66.667 0.00 0.00 39.73 3.82
2824 3095 4.994471 CACGCAGCTCTGGCCACA 62.994 66.667 0.00 0.00 39.73 4.17
2905 3176 4.227134 CGTCAGGGAGGCCGATGG 62.227 72.222 0.00 0.00 0.00 3.51
2906 3177 4.899239 GCGTCAGGGAGGCCGATG 62.899 72.222 0.00 0.00 37.46 3.84
2911 3182 3.254024 TTTCCAGCGTCAGGGAGGC 62.254 63.158 2.91 2.91 42.77 4.70
2912 3183 1.078848 CTTTCCAGCGTCAGGGAGG 60.079 63.158 0.00 0.00 34.02 4.30
2913 3184 1.743252 GCTTTCCAGCGTCAGGGAG 60.743 63.158 0.00 0.00 35.91 4.30
2914 3185 2.347490 GCTTTCCAGCGTCAGGGA 59.653 61.111 0.00 0.00 35.91 4.20
2923 3194 3.616956 TCCACTAGACATGCTTTCCAG 57.383 47.619 0.00 0.00 0.00 3.86
2924 3195 3.877559 CATCCACTAGACATGCTTTCCA 58.122 45.455 0.00 0.00 0.00 3.53
2925 3196 2.615912 GCATCCACTAGACATGCTTTCC 59.384 50.000 14.27 0.00 39.92 3.13
2926 3197 2.286294 CGCATCCACTAGACATGCTTTC 59.714 50.000 17.34 0.00 40.73 2.62
2927 3198 2.283298 CGCATCCACTAGACATGCTTT 58.717 47.619 17.34 0.00 40.73 3.51
2928 3199 1.945387 CGCATCCACTAGACATGCTT 58.055 50.000 17.34 0.00 40.73 3.91
2929 3200 0.531532 GCGCATCCACTAGACATGCT 60.532 55.000 0.30 0.00 40.73 3.79
2930 3201 1.502163 GGCGCATCCACTAGACATGC 61.502 60.000 10.83 12.48 39.70 4.06
2931 3202 0.179076 TGGCGCATCCACTAGACATG 60.179 55.000 10.83 0.00 40.72 3.21
2932 3203 2.211375 TGGCGCATCCACTAGACAT 58.789 52.632 10.83 0.00 40.72 3.06
2933 3204 3.706855 TGGCGCATCCACTAGACA 58.293 55.556 10.83 0.00 40.72 3.41
2941 3212 4.916293 TCCGAGCATGGCGCATCC 62.916 66.667 10.83 0.00 46.13 3.51
2942 3213 2.667536 ATCCGAGCATGGCGCATC 60.668 61.111 10.83 0.00 46.13 3.91
2943 3214 1.820010 TAGATCCGAGCATGGCGCAT 61.820 55.000 10.83 0.00 46.13 4.73
2944 3215 1.820010 ATAGATCCGAGCATGGCGCA 61.820 55.000 10.83 0.00 46.13 6.09
2945 3216 1.079543 ATAGATCCGAGCATGGCGC 60.080 57.895 0.00 0.00 42.91 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.