Multiple sequence alignment - TraesCS4A01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G380900 chr4A 100.000 2315 0 0 1 2315 658380714 658383028 0.000000e+00 4276.0
1 TraesCS4A01G380900 chr4A 85.648 216 16 4 1902 2102 651079231 651079446 1.800000e-51 213.0
2 TraesCS4A01G380900 chr2B 94.022 1723 72 9 202 1903 134340814 134342526 0.000000e+00 2582.0
3 TraesCS4A01G380900 chr2B 89.349 338 33 3 482 818 392005701 392006036 2.750000e-114 422.0
4 TraesCS4A01G380900 chr2B 91.554 296 21 4 525 818 100102019 100101726 2.770000e-109 405.0
5 TraesCS4A01G380900 chr2B 88.208 212 10 4 1902 2098 133681578 133681789 2.970000e-59 239.0
6 TraesCS4A01G380900 chr5D 93.932 1714 70 11 207 1903 27280256 27281952 0.000000e+00 2558.0
7 TraesCS4A01G380900 chr5D 94.604 834 33 4 1080 1903 431973345 431974176 0.000000e+00 1280.0
8 TraesCS4A01G380900 chr5D 90.070 574 44 4 202 767 431972779 431973347 0.000000e+00 732.0
9 TraesCS4A01G380900 chr5D 88.785 214 9 3 1904 2102 62203646 62203859 4.940000e-62 248.0
10 TraesCS4A01G380900 chr4D 93.159 1725 82 11 202 1903 85853311 85851600 0.000000e+00 2499.0
11 TraesCS4A01G380900 chr4D 91.584 202 11 4 109 304 85853480 85853279 8.150000e-70 274.0
12 TraesCS4A01G380900 chr4D 89.252 214 10 6 1902 2102 407186519 407186732 2.950000e-64 255.0
13 TraesCS4A01G380900 chr4D 87.204 211 14 2 1905 2102 449131911 449131701 6.430000e-56 228.0
14 TraesCS4A01G380900 chr4D 94.444 54 2 1 27 79 85854252 85854199 5.300000e-12 82.4
15 TraesCS4A01G380900 chr6D 93.379 1450 57 11 482 1903 440673101 440674539 0.000000e+00 2109.0
16 TraesCS4A01G380900 chr6D 89.621 607 43 6 202 798 137153153 137152557 0.000000e+00 754.0
17 TraesCS4A01G380900 chr6D 92.105 190 10 3 120 304 137153310 137153121 1.760000e-66 263.0
18 TraesCS4A01G380900 chr6D 87.907 215 12 2 1902 2102 298953841 298954055 8.270000e-60 241.0
19 TraesCS4A01G380900 chr2D 93.103 1450 62 10 482 1903 606091670 606090231 0.000000e+00 2089.0
20 TraesCS4A01G380900 chr2D 90.948 928 60 6 202 1119 29097258 29096345 0.000000e+00 1227.0
21 TraesCS4A01G380900 chr6A 93.452 1176 51 7 701 1860 163168206 163167041 0.000000e+00 1722.0
22 TraesCS4A01G380900 chr6A 89.401 434 40 2 202 635 163168656 163168229 2.020000e-150 542.0
23 TraesCS4A01G380900 chr7B 90.545 973 52 9 202 1146 228800107 228801067 0.000000e+00 1251.0
24 TraesCS4A01G380900 chr7B 96.414 725 20 1 1185 1903 228801064 228801788 0.000000e+00 1190.0
25 TraesCS4A01G380900 chr7B 89.302 215 6 4 1904 2102 504404750 504404537 1.060000e-63 254.0
26 TraesCS4A01G380900 chr7B 87.946 224 13 7 816 1027 593348475 593348254 3.820000e-63 252.0
27 TraesCS4A01G380900 chr7B 85.648 216 15 5 1902 2102 80420472 80420258 1.800000e-51 213.0
28 TraesCS4A01G380900 chr7B 90.984 122 8 2 1902 2023 494434155 494434273 6.620000e-36 161.0
29 TraesCS4A01G380900 chr7A 87.485 831 62 22 816 1626 617598489 617599297 0.000000e+00 920.0
30 TraesCS4A01G380900 chr7A 87.112 838 64 21 816 1629 41464795 41463978 0.000000e+00 909.0
31 TraesCS4A01G380900 chr2A 87.365 831 63 21 816 1626 756524456 756525264 0.000000e+00 915.0
32 TraesCS4A01G380900 chr2A 90.667 225 11 3 78 299 764882272 764882489 8.090000e-75 291.0
33 TraesCS4A01G380900 chr2A 92.157 51 3 1 27 76 764882197 764882247 1.150000e-08 71.3
34 TraesCS4A01G380900 chr2A 92.683 41 2 1 27 66 745095661 745095621 8.930000e-05 58.4
35 TraesCS4A01G380900 chr3D 88.687 495 33 6 320 798 614099916 614099429 1.190000e-162 582.0
36 TraesCS4A01G380900 chr3D 83.258 442 57 8 118 548 577282412 577281977 7.760000e-105 390.0
37 TraesCS4A01G380900 chr3D 88.372 215 11 2 1902 2102 609465601 609465815 1.780000e-61 246.0
38 TraesCS4A01G380900 chr5A 92.542 295 20 2 525 818 470930660 470930953 2.750000e-114 422.0
39 TraesCS4A01G380900 chr5A 93.488 215 12 2 2103 2315 565712610 565712396 3.710000e-83 318.0
40 TraesCS4A01G380900 chr7D 92.734 289 18 1 1618 1903 530740951 530740663 4.600000e-112 414.0
41 TraesCS4A01G380900 chr7D 94.419 215 10 2 2103 2315 557952410 557952196 1.710000e-86 329.0
42 TraesCS4A01G380900 chr7D 93.925 214 11 2 2103 2315 574812044 574812256 2.870000e-84 322.0
43 TraesCS4A01G380900 chr7D 88.889 216 9 4 1902 2102 503874151 503873936 3.820000e-63 252.0
44 TraesCS4A01G380900 chr3B 89.767 215 8 4 1902 2102 747925771 747925557 1.760000e-66 263.0
45 TraesCS4A01G380900 chr3B 89.352 216 8 4 1902 2102 574370336 574370121 8.210000e-65 257.0
46 TraesCS4A01G380900 chr3B 86.818 220 14 6 1898 2102 758610700 758610919 4.970000e-57 231.0
47 TraesCS4A01G380900 chr4B 88.785 214 9 4 1902 2100 639449515 639449728 4.940000e-62 248.0
48 TraesCS4A01G380900 chr4B 94.444 108 5 1 1995 2102 369605769 369605663 5.120000e-37 165.0
49 TraesCS4A01G380900 chr1D 88.372 215 11 6 1902 2102 299687825 299688039 1.780000e-61 246.0
50 TraesCS4A01G380900 chr5B 86.512 215 14 4 1902 2101 293465923 293465709 2.990000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G380900 chr4A 658380714 658383028 2314 False 4276.0 4276 100.000000 1 2315 1 chr4A.!!$F2 2314
1 TraesCS4A01G380900 chr2B 134340814 134342526 1712 False 2582.0 2582 94.022000 202 1903 1 chr2B.!!$F2 1701
2 TraesCS4A01G380900 chr5D 27280256 27281952 1696 False 2558.0 2558 93.932000 207 1903 1 chr5D.!!$F1 1696
3 TraesCS4A01G380900 chr5D 431972779 431974176 1397 False 1006.0 1280 92.337000 202 1903 2 chr5D.!!$F3 1701
4 TraesCS4A01G380900 chr4D 85851600 85854252 2652 True 951.8 2499 93.062333 27 1903 3 chr4D.!!$R2 1876
5 TraesCS4A01G380900 chr6D 440673101 440674539 1438 False 2109.0 2109 93.379000 482 1903 1 chr6D.!!$F2 1421
6 TraesCS4A01G380900 chr6D 137152557 137153310 753 True 508.5 754 90.863000 120 798 2 chr6D.!!$R1 678
7 TraesCS4A01G380900 chr2D 606090231 606091670 1439 True 2089.0 2089 93.103000 482 1903 1 chr2D.!!$R2 1421
8 TraesCS4A01G380900 chr2D 29096345 29097258 913 True 1227.0 1227 90.948000 202 1119 1 chr2D.!!$R1 917
9 TraesCS4A01G380900 chr6A 163167041 163168656 1615 True 1132.0 1722 91.426500 202 1860 2 chr6A.!!$R1 1658
10 TraesCS4A01G380900 chr7B 228800107 228801788 1681 False 1220.5 1251 93.479500 202 1903 2 chr7B.!!$F2 1701
11 TraesCS4A01G380900 chr7A 617598489 617599297 808 False 920.0 920 87.485000 816 1626 1 chr7A.!!$F1 810
12 TraesCS4A01G380900 chr7A 41463978 41464795 817 True 909.0 909 87.112000 816 1629 1 chr7A.!!$R1 813
13 TraesCS4A01G380900 chr2A 756524456 756525264 808 False 915.0 915 87.365000 816 1626 1 chr2A.!!$F1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1790 0.254462 TCAGCACACAACCCAACTCA 59.746 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2871 0.254747 TCGGCCCAATTAAGTCCAGG 59.745 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.245584 AGGGTAGTTCCGTCCAATTTTAA 57.754 39.130 0.00 0.00 37.00 1.52
59 60 5.650703 AGGGTAGTTCCGTCCAATTTTAATG 59.349 40.000 0.00 0.00 37.00 1.90
84 109 2.358957 CAAATCCTGTTCGCATCTGGA 58.641 47.619 0.00 0.00 37.34 3.86
101 126 3.960755 TCTGGATCGCTCCTGATTCTAAA 59.039 43.478 10.46 0.00 42.66 1.85
103 128 4.697514 TGGATCGCTCCTGATTCTAAAAG 58.302 43.478 6.88 0.00 42.59 2.27
105 130 5.104941 TGGATCGCTCCTGATTCTAAAAGAA 60.105 40.000 6.88 0.00 42.59 2.52
109 134 8.964476 ATCGCTCCTGATTCTAAAAGAAAATA 57.036 30.769 0.00 0.00 37.82 1.40
110 135 8.786826 TCGCTCCTGATTCTAAAAGAAAATAA 57.213 30.769 0.00 0.00 37.82 1.40
111 136 9.226606 TCGCTCCTGATTCTAAAAGAAAATAAA 57.773 29.630 0.00 0.00 37.82 1.40
112 137 9.840427 CGCTCCTGATTCTAAAAGAAAATAAAA 57.160 29.630 0.00 0.00 37.82 1.52
196 888 1.837499 GCAGGGTAGGATAGGGCGT 60.837 63.158 0.00 0.00 0.00 5.68
318 1091 3.327404 GGGTCCCAAGGGCTCGAA 61.327 66.667 1.78 0.00 34.68 3.71
346 1119 0.388520 TCTGATGCACTCGTGGTTCG 60.389 55.000 0.00 0.00 41.41 3.95
361 1134 3.909258 TTCGTCGCCGTCAAGAGCC 62.909 63.158 0.00 0.00 35.01 4.70
409 1190 1.905215 CCAGAGGAAGAGGAAGAGCAA 59.095 52.381 0.00 0.00 0.00 3.91
418 1199 1.449778 GGAAGAGCAACCTACGCCC 60.450 63.158 0.00 0.00 0.00 6.13
487 1268 2.182030 CGTGAAGGTCGAGGAGGC 59.818 66.667 0.00 0.00 0.00 4.70
507 1288 4.700365 CCGTCTCGTCGTGCAGCA 62.700 66.667 0.00 0.00 0.00 4.41
617 1413 2.508439 CGGCGCAACACCGTCTAT 60.508 61.111 10.83 0.00 45.70 1.98
651 1464 7.349412 TCTCTTACTCTACCTTATTCCTTGC 57.651 40.000 0.00 0.00 0.00 4.01
857 1672 8.731275 TCTGTATTATGTAAAACAGGTCATGG 57.269 34.615 0.00 0.00 39.80 3.66
885 1704 3.125829 TCTGCAGTTGCTGATTCGATTTC 59.874 43.478 14.67 0.00 42.71 2.17
890 1711 5.164119 GCAGTTGCTGATTCGATTTCTTTTG 60.164 40.000 0.00 0.00 38.21 2.44
891 1712 4.919754 AGTTGCTGATTCGATTTCTTTTGC 59.080 37.500 0.00 0.00 0.00 3.68
893 1714 5.125100 TGCTGATTCGATTTCTTTTGCTT 57.875 34.783 0.00 0.00 0.00 3.91
895 1716 5.156355 GCTGATTCGATTTCTTTTGCTTCA 58.844 37.500 0.00 0.00 0.00 3.02
896 1717 5.630680 GCTGATTCGATTTCTTTTGCTTCAA 59.369 36.000 0.00 0.00 0.00 2.69
941 1767 4.302455 CGGAGCTTCAATGACGAATCTAT 58.698 43.478 0.00 0.00 0.00 1.98
955 1781 6.816140 TGACGAATCTATTATTCAGCACACAA 59.184 34.615 0.00 0.00 0.00 3.33
964 1790 0.254462 TCAGCACACAACCCAACTCA 59.746 50.000 0.00 0.00 0.00 3.41
1016 1850 4.827087 CATGCTCGCCTCGGCAGT 62.827 66.667 8.87 0.00 41.88 4.40
1017 1851 4.521062 ATGCTCGCCTCGGCAGTC 62.521 66.667 8.87 0.00 41.88 3.51
1019 1853 4.521062 GCTCGCCTCGGCAGTCAT 62.521 66.667 8.87 0.00 42.06 3.06
1020 1854 2.279120 CTCGCCTCGGCAGTCATC 60.279 66.667 8.87 0.00 42.06 2.92
1021 1855 3.068064 TCGCCTCGGCAGTCATCA 61.068 61.111 8.87 0.00 42.06 3.07
1022 1856 2.125552 CGCCTCGGCAGTCATCAA 60.126 61.111 8.87 0.00 42.06 2.57
1023 1857 1.741401 CGCCTCGGCAGTCATCAAA 60.741 57.895 8.87 0.00 42.06 2.69
1179 2023 5.303078 TGAGAGGGAGTCTATCAAGCATAAC 59.697 44.000 0.00 0.00 40.37 1.89
1274 2160 1.228154 AAACCGACCTCAACCTGGC 60.228 57.895 0.00 0.00 0.00 4.85
1302 2194 6.510799 GCAAGATTCTGATTTGGTCACTATCG 60.511 42.308 0.00 0.00 31.53 2.92
1446 2338 8.240883 AGTCGATGTTAAGTAAAAGCTACTTG 57.759 34.615 10.09 0.00 38.16 3.16
1448 2340 8.493547 GTCGATGTTAAGTAAAAGCTACTTGTT 58.506 33.333 10.09 0.00 38.16 2.83
1449 2341 8.492748 TCGATGTTAAGTAAAAGCTACTTGTTG 58.507 33.333 10.09 0.24 38.16 3.33
1450 2342 8.492748 CGATGTTAAGTAAAAGCTACTTGTTGA 58.507 33.333 10.09 0.00 38.16 3.18
1475 2373 3.507622 CCAAGACCACCTTTTCATTCCTC 59.492 47.826 0.00 0.00 31.42 3.71
1551 2452 6.018469 TCATGATTTGATTGAGGGGAAAGTT 58.982 36.000 0.00 0.00 0.00 2.66
1559 2460 7.938140 TGATTGAGGGGAAAGTTAAGTAATG 57.062 36.000 0.00 0.00 0.00 1.90
1565 2466 7.400915 TGAGGGGAAAGTTAAGTAATGCTAGTA 59.599 37.037 0.00 0.00 0.00 1.82
1582 2483 5.538813 TGCTAGTATGGTATCCCAAGTGTAG 59.461 44.000 0.00 0.00 46.04 2.74
1630 2531 4.828939 TCAAGCACCTGATTGAAACAAGAT 59.171 37.500 3.52 0.00 45.95 2.40
1864 2765 7.990314 TGGCTGCTTCCTAAAACTTAAAATTTT 59.010 29.630 8.75 8.75 33.85 1.82
1905 2806 4.399004 CCAAAAGATGGTTGTTGTTGGA 57.601 40.909 0.00 0.00 44.85 3.53
1906 2807 4.119136 CCAAAAGATGGTTGTTGTTGGAC 58.881 43.478 0.00 0.00 44.85 4.02
1907 2808 4.119136 CAAAAGATGGTTGTTGTTGGACC 58.881 43.478 0.00 0.00 0.00 4.46
1908 2809 3.312736 AAGATGGTTGTTGTTGGACCT 57.687 42.857 0.00 0.00 34.52 3.85
1909 2810 2.863809 AGATGGTTGTTGTTGGACCTC 58.136 47.619 0.00 0.00 34.52 3.85
1910 2811 2.443255 AGATGGTTGTTGTTGGACCTCT 59.557 45.455 0.00 0.00 34.52 3.69
1911 2812 3.650942 AGATGGTTGTTGTTGGACCTCTA 59.349 43.478 0.00 0.00 34.52 2.43
1912 2813 4.289672 AGATGGTTGTTGTTGGACCTCTAT 59.710 41.667 0.00 0.00 34.52 1.98
1913 2814 5.487488 AGATGGTTGTTGTTGGACCTCTATA 59.513 40.000 0.00 0.00 34.52 1.31
1914 2815 5.570205 TGGTTGTTGTTGGACCTCTATAA 57.430 39.130 0.00 0.00 34.52 0.98
1915 2816 6.134535 TGGTTGTTGTTGGACCTCTATAAT 57.865 37.500 0.00 0.00 34.52 1.28
1916 2817 5.943416 TGGTTGTTGTTGGACCTCTATAATG 59.057 40.000 0.00 0.00 34.52 1.90
1917 2818 6.177610 GGTTGTTGTTGGACCTCTATAATGA 58.822 40.000 0.00 0.00 0.00 2.57
1918 2819 6.657541 GGTTGTTGTTGGACCTCTATAATGAA 59.342 38.462 0.00 0.00 0.00 2.57
1919 2820 7.148239 GGTTGTTGTTGGACCTCTATAATGAAG 60.148 40.741 0.00 0.00 0.00 3.02
1920 2821 7.016153 TGTTGTTGGACCTCTATAATGAAGT 57.984 36.000 0.00 0.00 0.00 3.01
1921 2822 6.878923 TGTTGTTGGACCTCTATAATGAAGTG 59.121 38.462 0.00 0.00 0.00 3.16
1922 2823 6.620877 TGTTGGACCTCTATAATGAAGTGT 57.379 37.500 0.00 0.00 0.00 3.55
1923 2824 7.016153 TGTTGGACCTCTATAATGAAGTGTT 57.984 36.000 0.00 0.00 0.00 3.32
1924 2825 7.458397 TGTTGGACCTCTATAATGAAGTGTTT 58.542 34.615 0.00 0.00 0.00 2.83
1925 2826 7.942341 TGTTGGACCTCTATAATGAAGTGTTTT 59.058 33.333 0.00 0.00 0.00 2.43
1926 2827 9.444600 GTTGGACCTCTATAATGAAGTGTTTTA 57.555 33.333 0.00 0.00 0.00 1.52
1963 2864 8.920509 AATTTAATCGAAAAATTTAGGACGGG 57.079 30.769 13.28 0.00 33.78 5.28
1964 2865 4.365899 AATCGAAAAATTTAGGACGGGC 57.634 40.909 0.00 0.00 0.00 6.13
1965 2866 2.780714 TCGAAAAATTTAGGACGGGCA 58.219 42.857 0.00 0.00 0.00 5.36
1966 2867 3.349022 TCGAAAAATTTAGGACGGGCAT 58.651 40.909 0.00 0.00 0.00 4.40
1967 2868 4.515361 TCGAAAAATTTAGGACGGGCATA 58.485 39.130 0.00 0.00 0.00 3.14
1968 2869 4.333372 TCGAAAAATTTAGGACGGGCATAC 59.667 41.667 0.00 0.00 0.00 2.39
1969 2870 4.496840 CGAAAAATTTAGGACGGGCATACC 60.497 45.833 0.00 0.00 0.00 2.73
1982 2883 3.595190 GGCATACCCCTGGACTTAATT 57.405 47.619 0.00 0.00 0.00 1.40
1983 2884 3.222603 GGCATACCCCTGGACTTAATTG 58.777 50.000 0.00 0.00 0.00 2.32
1984 2885 3.222603 GCATACCCCTGGACTTAATTGG 58.777 50.000 0.00 0.00 0.00 3.16
1985 2886 3.832527 CATACCCCTGGACTTAATTGGG 58.167 50.000 0.00 0.00 39.02 4.12
1986 2887 0.335019 ACCCCTGGACTTAATTGGGC 59.665 55.000 0.00 0.00 36.45 5.36
1987 2888 0.397114 CCCCTGGACTTAATTGGGCC 60.397 60.000 0.00 0.00 36.66 5.80
1988 2889 0.751643 CCCTGGACTTAATTGGGCCG 60.752 60.000 0.00 0.00 0.00 6.13
1989 2890 0.254747 CCTGGACTTAATTGGGCCGA 59.745 55.000 0.00 0.00 0.00 5.54
1990 2891 1.133792 CCTGGACTTAATTGGGCCGAT 60.134 52.381 0.00 0.00 0.00 4.18
1991 2892 2.654863 CTGGACTTAATTGGGCCGATT 58.345 47.619 22.33 22.33 0.00 3.34
1992 2893 3.434453 CCTGGACTTAATTGGGCCGATTA 60.434 47.826 20.24 20.24 0.00 1.75
1993 2894 4.204012 CTGGACTTAATTGGGCCGATTAA 58.796 43.478 28.92 28.92 31.37 1.40
1994 2895 4.601084 TGGACTTAATTGGGCCGATTAAA 58.399 39.130 29.90 18.01 31.71 1.52
1995 2896 4.642885 TGGACTTAATTGGGCCGATTAAAG 59.357 41.667 29.90 25.32 31.71 1.85
1996 2897 4.037565 GGACTTAATTGGGCCGATTAAAGG 59.962 45.833 29.90 23.59 31.71 3.11
1997 2898 4.606210 ACTTAATTGGGCCGATTAAAGGT 58.394 39.130 29.90 24.09 31.71 3.50
1998 2899 5.757988 ACTTAATTGGGCCGATTAAAGGTA 58.242 37.500 29.90 14.77 31.71 3.08
1999 2900 5.591472 ACTTAATTGGGCCGATTAAAGGTAC 59.409 40.000 29.90 0.00 31.71 3.34
2000 2901 3.655615 ATTGGGCCGATTAAAGGTACA 57.344 42.857 0.00 0.41 0.00 2.90
2001 2902 3.436577 TTGGGCCGATTAAAGGTACAA 57.563 42.857 0.00 5.43 0.00 2.41
2002 2903 3.436577 TGGGCCGATTAAAGGTACAAA 57.563 42.857 0.00 0.00 0.00 2.83
2003 2904 3.764218 TGGGCCGATTAAAGGTACAAAA 58.236 40.909 0.00 0.00 0.00 2.44
2004 2905 4.150359 TGGGCCGATTAAAGGTACAAAAA 58.850 39.130 0.00 0.00 0.00 1.94
2005 2906 4.773149 TGGGCCGATTAAAGGTACAAAAAT 59.227 37.500 0.00 0.00 0.00 1.82
2006 2907 5.950549 TGGGCCGATTAAAGGTACAAAAATA 59.049 36.000 0.00 0.00 0.00 1.40
2007 2908 6.608002 TGGGCCGATTAAAGGTACAAAAATAT 59.392 34.615 0.00 0.00 0.00 1.28
2008 2909 7.143340 GGGCCGATTAAAGGTACAAAAATATC 58.857 38.462 0.00 0.00 0.00 1.63
2009 2910 7.143340 GGCCGATTAAAGGTACAAAAATATCC 58.857 38.462 0.00 0.00 0.00 2.59
2010 2911 7.013942 GGCCGATTAAAGGTACAAAAATATCCT 59.986 37.037 0.00 0.00 0.00 3.24
2011 2912 8.410912 GCCGATTAAAGGTACAAAAATATCCTT 58.589 33.333 0.00 0.00 39.75 3.36
2012 2913 9.730420 CCGATTAAAGGTACAAAAATATCCTTG 57.270 33.333 0.00 0.00 38.33 3.61
2013 2914 9.730420 CGATTAAAGGTACAAAAATATCCTTGG 57.270 33.333 0.00 0.00 38.33 3.61
2015 2916 5.932619 AAGGTACAAAAATATCCTTGGGC 57.067 39.130 0.00 0.00 37.17 5.36
2016 2917 5.206905 AGGTACAAAAATATCCTTGGGCT 57.793 39.130 0.00 0.00 0.00 5.19
2017 2918 5.201243 AGGTACAAAAATATCCTTGGGCTC 58.799 41.667 0.00 0.00 0.00 4.70
2018 2919 4.953579 GGTACAAAAATATCCTTGGGCTCA 59.046 41.667 0.00 0.00 0.00 4.26
2019 2920 5.420739 GGTACAAAAATATCCTTGGGCTCAA 59.579 40.000 0.00 0.00 0.00 3.02
2020 2921 6.071051 GGTACAAAAATATCCTTGGGCTCAAA 60.071 38.462 0.00 0.00 31.77 2.69
2021 2922 6.432403 ACAAAAATATCCTTGGGCTCAAAA 57.568 33.333 0.00 0.00 31.77 2.44
2022 2923 6.836242 ACAAAAATATCCTTGGGCTCAAAAA 58.164 32.000 0.00 0.00 31.77 1.94
2023 2924 6.936335 ACAAAAATATCCTTGGGCTCAAAAAG 59.064 34.615 0.00 0.00 31.77 2.27
2024 2925 5.682234 AAATATCCTTGGGCTCAAAAAGG 57.318 39.130 0.00 0.00 41.60 3.11
2030 2931 4.198087 GGCTCAAAAAGGCCCAGT 57.802 55.556 0.00 0.00 44.69 4.00
2031 2932 2.440946 GGCTCAAAAAGGCCCAGTT 58.559 52.632 0.00 0.00 44.69 3.16
2032 2933 1.627864 GGCTCAAAAAGGCCCAGTTA 58.372 50.000 0.00 0.00 44.69 2.24
2033 2934 2.179427 GGCTCAAAAAGGCCCAGTTAT 58.821 47.619 0.00 0.00 44.69 1.89
2034 2935 2.567169 GGCTCAAAAAGGCCCAGTTATT 59.433 45.455 0.00 0.00 44.69 1.40
2035 2936 3.368427 GGCTCAAAAAGGCCCAGTTATTC 60.368 47.826 0.00 0.00 44.69 1.75
2036 2937 3.511540 GCTCAAAAAGGCCCAGTTATTCT 59.488 43.478 0.00 0.00 0.00 2.40
2037 2938 4.380973 GCTCAAAAAGGCCCAGTTATTCTC 60.381 45.833 0.00 0.00 0.00 2.87
2038 2939 4.735369 TCAAAAAGGCCCAGTTATTCTCA 58.265 39.130 0.00 0.00 0.00 3.27
2039 2940 5.332743 TCAAAAAGGCCCAGTTATTCTCAT 58.667 37.500 0.00 0.00 0.00 2.90
2040 2941 5.418840 TCAAAAAGGCCCAGTTATTCTCATC 59.581 40.000 0.00 0.00 0.00 2.92
2041 2942 3.584733 AAGGCCCAGTTATTCTCATCC 57.415 47.619 0.00 0.00 0.00 3.51
2042 2943 1.417890 AGGCCCAGTTATTCTCATCCG 59.582 52.381 0.00 0.00 0.00 4.18
2043 2944 1.141053 GGCCCAGTTATTCTCATCCGT 59.859 52.381 0.00 0.00 0.00 4.69
2044 2945 2.421529 GGCCCAGTTATTCTCATCCGTT 60.422 50.000 0.00 0.00 0.00 4.44
2045 2946 3.181458 GGCCCAGTTATTCTCATCCGTTA 60.181 47.826 0.00 0.00 0.00 3.18
2046 2947 4.058817 GCCCAGTTATTCTCATCCGTTAG 58.941 47.826 0.00 0.00 0.00 2.34
2047 2948 4.202223 GCCCAGTTATTCTCATCCGTTAGA 60.202 45.833 0.00 0.00 0.00 2.10
2048 2949 5.511545 GCCCAGTTATTCTCATCCGTTAGAT 60.512 44.000 0.00 0.00 34.66 1.98
2049 2950 6.159988 CCCAGTTATTCTCATCCGTTAGATC 58.840 44.000 0.00 0.00 30.59 2.75
2050 2951 6.239317 CCCAGTTATTCTCATCCGTTAGATCA 60.239 42.308 0.00 0.00 30.59 2.92
2051 2952 6.642950 CCAGTTATTCTCATCCGTTAGATCAC 59.357 42.308 0.00 0.00 30.59 3.06
2052 2953 6.642950 CAGTTATTCTCATCCGTTAGATCACC 59.357 42.308 0.00 0.00 30.59 4.02
2053 2954 4.608948 ATTCTCATCCGTTAGATCACCC 57.391 45.455 0.00 0.00 30.59 4.61
2054 2955 3.026707 TCTCATCCGTTAGATCACCCA 57.973 47.619 0.00 0.00 30.59 4.51
2055 2956 3.576861 TCTCATCCGTTAGATCACCCAT 58.423 45.455 0.00 0.00 30.59 4.00
2056 2957 4.736473 TCTCATCCGTTAGATCACCCATA 58.264 43.478 0.00 0.00 30.59 2.74
2057 2958 5.333581 TCTCATCCGTTAGATCACCCATAT 58.666 41.667 0.00 0.00 30.59 1.78
2058 2959 6.490492 TCTCATCCGTTAGATCACCCATATA 58.510 40.000 0.00 0.00 30.59 0.86
2059 2960 6.951778 TCTCATCCGTTAGATCACCCATATAA 59.048 38.462 0.00 0.00 30.59 0.98
2060 2961 7.619698 TCTCATCCGTTAGATCACCCATATAAT 59.380 37.037 0.00 0.00 30.59 1.28
2061 2962 8.832458 TCATCCGTTAGATCACCCATATAATA 57.168 34.615 0.00 0.00 30.59 0.98
2062 2963 8.692710 TCATCCGTTAGATCACCCATATAATAC 58.307 37.037 0.00 0.00 30.59 1.89
2063 2964 8.474831 CATCCGTTAGATCACCCATATAATACA 58.525 37.037 0.00 0.00 30.59 2.29
2064 2965 7.833786 TCCGTTAGATCACCCATATAATACAC 58.166 38.462 0.00 0.00 0.00 2.90
2065 2966 6.750501 CCGTTAGATCACCCATATAATACACG 59.249 42.308 0.00 0.00 0.00 4.49
2066 2967 7.310664 CGTTAGATCACCCATATAATACACGT 58.689 38.462 0.00 0.00 0.00 4.49
2067 2968 7.272731 CGTTAGATCACCCATATAATACACGTG 59.727 40.741 15.48 15.48 0.00 4.49
2068 2969 5.479306 AGATCACCCATATAATACACGTGC 58.521 41.667 17.22 0.00 0.00 5.34
2069 2970 4.948341 TCACCCATATAATACACGTGCT 57.052 40.909 17.22 5.64 0.00 4.40
2070 2971 4.878439 TCACCCATATAATACACGTGCTC 58.122 43.478 17.22 0.00 0.00 4.26
2071 2972 3.994392 CACCCATATAATACACGTGCTCC 59.006 47.826 17.22 0.00 0.00 4.70
2072 2973 3.250744 CCCATATAATACACGTGCTCCG 58.749 50.000 17.22 0.00 44.03 4.63
2073 2974 3.250744 CCATATAATACACGTGCTCCGG 58.749 50.000 17.22 0.00 42.24 5.14
2074 2975 3.305813 CCATATAATACACGTGCTCCGGT 60.306 47.826 17.22 0.00 42.24 5.28
2075 2976 2.218953 ATAATACACGTGCTCCGGTG 57.781 50.000 17.22 0.00 42.24 4.94
2076 2977 0.889994 TAATACACGTGCTCCGGTGT 59.110 50.000 17.22 0.00 42.24 4.16
2077 2978 0.889994 AATACACGTGCTCCGGTGTA 59.110 50.000 17.22 1.49 42.24 2.90
2078 2979 1.108776 ATACACGTGCTCCGGTGTAT 58.891 50.000 17.22 10.17 42.24 2.29
2079 2980 0.889994 TACACGTGCTCCGGTGTATT 59.110 50.000 17.22 0.00 42.24 1.89
2080 2981 0.889994 ACACGTGCTCCGGTGTATTA 59.110 50.000 17.22 0.00 42.24 0.98
2081 2982 1.479323 ACACGTGCTCCGGTGTATTAT 59.521 47.619 17.22 0.00 42.24 1.28
2082 2983 2.689471 ACACGTGCTCCGGTGTATTATA 59.311 45.455 17.22 0.00 42.24 0.98
2083 2984 3.130869 ACACGTGCTCCGGTGTATTATAA 59.869 43.478 17.22 0.00 42.24 0.98
2084 2985 4.202182 ACACGTGCTCCGGTGTATTATAAT 60.202 41.667 17.22 2.97 42.24 1.28
2085 2986 4.149922 CACGTGCTCCGGTGTATTATAATG 59.850 45.833 0.82 0.00 42.24 1.90
2086 2987 3.122948 CGTGCTCCGGTGTATTATAATGC 59.877 47.826 8.28 7.40 0.00 3.56
2087 2988 4.062293 GTGCTCCGGTGTATTATAATGCA 58.938 43.478 11.69 11.69 0.00 3.96
2088 2989 4.062293 TGCTCCGGTGTATTATAATGCAC 58.938 43.478 28.58 28.58 46.88 4.57
2100 3001 9.953697 TGTATTATAATGCACCGTAAAATTTCC 57.046 29.630 11.69 0.00 0.00 3.13
2101 3002 9.401873 GTATTATAATGCACCGTAAAATTTCCC 57.598 33.333 8.28 0.00 0.00 3.97
2102 3003 3.603158 AATGCACCGTAAAATTTCCCC 57.397 42.857 0.00 0.00 0.00 4.81
2103 3004 2.296073 TGCACCGTAAAATTTCCCCT 57.704 45.000 0.00 0.00 0.00 4.79
2104 3005 2.164338 TGCACCGTAAAATTTCCCCTC 58.836 47.619 0.00 0.00 0.00 4.30
2105 3006 1.475280 GCACCGTAAAATTTCCCCTCC 59.525 52.381 0.00 0.00 0.00 4.30
2106 3007 2.882643 GCACCGTAAAATTTCCCCTCCT 60.883 50.000 0.00 0.00 0.00 3.69
2107 3008 3.622953 GCACCGTAAAATTTCCCCTCCTA 60.623 47.826 0.00 0.00 0.00 2.94
2108 3009 4.591929 CACCGTAAAATTTCCCCTCCTAA 58.408 43.478 0.00 0.00 0.00 2.69
2109 3010 5.011586 CACCGTAAAATTTCCCCTCCTAAA 58.988 41.667 0.00 0.00 0.00 1.85
2110 3011 5.655090 CACCGTAAAATTTCCCCTCCTAAAT 59.345 40.000 0.00 0.00 0.00 1.40
2111 3012 6.153851 CACCGTAAAATTTCCCCTCCTAAATT 59.846 38.462 0.00 0.00 36.98 1.82
2112 3013 6.153851 ACCGTAAAATTTCCCCTCCTAAATTG 59.846 38.462 0.00 0.00 35.89 2.32
2113 3014 6.406512 CCGTAAAATTTCCCCTCCTAAATTGG 60.407 42.308 0.00 0.00 35.89 3.16
2114 3015 6.153851 CGTAAAATTTCCCCTCCTAAATTGGT 59.846 38.462 0.00 0.00 35.89 3.67
2115 3016 7.339976 CGTAAAATTTCCCCTCCTAAATTGGTA 59.660 37.037 0.00 0.00 35.89 3.25
2116 3017 7.490657 AAAATTTCCCCTCCTAAATTGGTAC 57.509 36.000 0.00 0.00 35.89 3.34
2117 3018 6.417503 AATTTCCCCTCCTAAATTGGTACT 57.582 37.500 0.00 0.00 34.77 2.73
2118 3019 5.446260 TTTCCCCTCCTAAATTGGTACTC 57.554 43.478 0.00 0.00 0.00 2.59
2119 3020 3.036091 TCCCCTCCTAAATTGGTACTCG 58.964 50.000 0.00 0.00 0.00 4.18
2120 3021 2.770232 CCCCTCCTAAATTGGTACTCGT 59.230 50.000 0.00 0.00 0.00 4.18
2121 3022 3.431766 CCCCTCCTAAATTGGTACTCGTG 60.432 52.174 0.00 0.00 0.00 4.35
2122 3023 3.431766 CCCTCCTAAATTGGTACTCGTGG 60.432 52.174 0.00 0.00 0.00 4.94
2123 3024 3.449737 CCTCCTAAATTGGTACTCGTGGA 59.550 47.826 0.00 0.00 0.00 4.02
2124 3025 4.081309 CCTCCTAAATTGGTACTCGTGGAA 60.081 45.833 0.00 0.00 0.00 3.53
2125 3026 5.396436 CCTCCTAAATTGGTACTCGTGGAAT 60.396 44.000 0.00 0.00 0.00 3.01
2126 3027 6.057321 TCCTAAATTGGTACTCGTGGAATT 57.943 37.500 0.00 0.00 0.00 2.17
2127 3028 6.478129 TCCTAAATTGGTACTCGTGGAATTT 58.522 36.000 0.00 0.00 32.46 1.82
2128 3029 6.943718 TCCTAAATTGGTACTCGTGGAATTTT 59.056 34.615 0.00 0.00 30.78 1.82
2129 3030 7.449086 TCCTAAATTGGTACTCGTGGAATTTTT 59.551 33.333 0.00 0.00 30.78 1.94
2130 3031 7.540745 CCTAAATTGGTACTCGTGGAATTTTTG 59.459 37.037 0.00 0.00 30.78 2.44
2131 3032 6.399639 AATTGGTACTCGTGGAATTTTTGT 57.600 33.333 0.00 0.00 0.00 2.83
2132 3033 4.822036 TGGTACTCGTGGAATTTTTGTG 57.178 40.909 0.00 0.00 0.00 3.33
2133 3034 3.566322 TGGTACTCGTGGAATTTTTGTGG 59.434 43.478 0.00 0.00 0.00 4.17
2134 3035 3.057806 GGTACTCGTGGAATTTTTGTGGG 60.058 47.826 0.00 0.00 0.00 4.61
2135 3036 2.938838 ACTCGTGGAATTTTTGTGGGA 58.061 42.857 0.00 0.00 0.00 4.37
2136 3037 3.292460 ACTCGTGGAATTTTTGTGGGAA 58.708 40.909 0.00 0.00 0.00 3.97
2137 3038 3.067601 ACTCGTGGAATTTTTGTGGGAAC 59.932 43.478 0.00 0.00 0.00 3.62
2138 3039 3.292460 TCGTGGAATTTTTGTGGGAACT 58.708 40.909 0.00 0.00 0.00 3.01
2139 3040 3.702045 TCGTGGAATTTTTGTGGGAACTT 59.298 39.130 0.00 0.00 0.00 2.66
2140 3041 4.160626 TCGTGGAATTTTTGTGGGAACTTT 59.839 37.500 0.00 0.00 0.00 2.66
2141 3042 4.873259 CGTGGAATTTTTGTGGGAACTTTT 59.127 37.500 0.00 0.00 0.00 2.27
2142 3043 6.043411 CGTGGAATTTTTGTGGGAACTTTTA 58.957 36.000 0.00 0.00 0.00 1.52
2143 3044 6.704050 CGTGGAATTTTTGTGGGAACTTTTAT 59.296 34.615 0.00 0.00 0.00 1.40
2144 3045 7.225734 CGTGGAATTTTTGTGGGAACTTTTATT 59.774 33.333 0.00 0.00 0.00 1.40
2145 3046 8.898761 GTGGAATTTTTGTGGGAACTTTTATTT 58.101 29.630 0.00 0.00 0.00 1.40
2146 3047 9.467796 TGGAATTTTTGTGGGAACTTTTATTTT 57.532 25.926 0.00 0.00 0.00 1.82
2150 3051 8.863872 TTTTTGTGGGAACTTTTATTTTTGGA 57.136 26.923 0.00 0.00 0.00 3.53
2151 3052 9.467796 TTTTTGTGGGAACTTTTATTTTTGGAT 57.532 25.926 0.00 0.00 0.00 3.41
2190 3091 9.448438 AAAAATATTCTACCCAATTTTTGAGCC 57.552 29.630 4.36 0.00 39.07 4.70
2191 3092 7.732222 AATATTCTACCCAATTTTTGAGCCA 57.268 32.000 0.00 0.00 0.00 4.75
2192 3093 7.732222 ATATTCTACCCAATTTTTGAGCCAA 57.268 32.000 0.00 0.00 0.00 4.52
2193 3094 5.878406 TTCTACCCAATTTTTGAGCCAAA 57.122 34.783 0.00 0.00 0.00 3.28
2194 3095 5.878406 TCTACCCAATTTTTGAGCCAAAA 57.122 34.783 8.46 8.46 40.85 2.44
2207 3108 2.601905 AGCCAAAAATGCTCCTCAACT 58.398 42.857 0.00 0.00 32.41 3.16
2208 3109 2.967887 AGCCAAAAATGCTCCTCAACTT 59.032 40.909 0.00 0.00 32.41 2.66
2209 3110 3.062042 GCCAAAAATGCTCCTCAACTTG 58.938 45.455 0.00 0.00 0.00 3.16
2210 3111 3.243839 GCCAAAAATGCTCCTCAACTTGA 60.244 43.478 0.00 0.00 0.00 3.02
2211 3112 4.740334 GCCAAAAATGCTCCTCAACTTGAA 60.740 41.667 0.00 0.00 0.00 2.69
2212 3113 5.544650 CCAAAAATGCTCCTCAACTTGAAT 58.455 37.500 0.00 0.00 0.00 2.57
2213 3114 5.993441 CCAAAAATGCTCCTCAACTTGAATT 59.007 36.000 0.00 0.00 0.00 2.17
2214 3115 6.484308 CCAAAAATGCTCCTCAACTTGAATTT 59.516 34.615 0.00 0.00 0.00 1.82
2215 3116 7.012610 CCAAAAATGCTCCTCAACTTGAATTTT 59.987 33.333 5.72 5.72 28.62 1.82
2216 3117 7.486802 AAAATGCTCCTCAACTTGAATTTTG 57.513 32.000 9.05 0.00 27.27 2.44
2217 3118 3.981211 TGCTCCTCAACTTGAATTTTGC 58.019 40.909 0.00 0.00 0.00 3.68
2218 3119 3.638160 TGCTCCTCAACTTGAATTTTGCT 59.362 39.130 0.00 0.00 0.00 3.91
2219 3120 4.099881 TGCTCCTCAACTTGAATTTTGCTT 59.900 37.500 0.00 0.00 0.00 3.91
2220 3121 5.052481 GCTCCTCAACTTGAATTTTGCTTT 58.948 37.500 0.00 0.00 0.00 3.51
2221 3122 5.525012 GCTCCTCAACTTGAATTTTGCTTTT 59.475 36.000 0.00 0.00 0.00 2.27
2222 3123 6.701400 GCTCCTCAACTTGAATTTTGCTTTTA 59.299 34.615 0.00 0.00 0.00 1.52
2223 3124 7.095899 GCTCCTCAACTTGAATTTTGCTTTTAG 60.096 37.037 0.00 0.00 0.00 1.85
2224 3125 7.781056 TCCTCAACTTGAATTTTGCTTTTAGT 58.219 30.769 0.00 0.00 0.00 2.24
2225 3126 8.257306 TCCTCAACTTGAATTTTGCTTTTAGTT 58.743 29.630 0.00 0.00 0.00 2.24
2226 3127 8.882736 CCTCAACTTGAATTTTGCTTTTAGTTT 58.117 29.630 0.00 0.00 0.00 2.66
2251 3152 6.677781 TTTTCTTTCGAGAAAGCTTCTTGA 57.322 33.333 17.98 5.64 46.03 3.02
2258 3159 6.473397 TCGAGAAAGCTTCTTGAAATCTTC 57.527 37.500 0.00 0.00 45.02 2.87
2259 3160 5.409826 TCGAGAAAGCTTCTTGAAATCTTCC 59.590 40.000 0.00 0.00 45.02 3.46
2260 3161 5.411053 CGAGAAAGCTTCTTGAAATCTTCCT 59.589 40.000 0.00 0.00 42.69 3.36
2261 3162 6.591834 CGAGAAAGCTTCTTGAAATCTTCCTA 59.408 38.462 0.00 0.00 42.69 2.94
2262 3163 7.201513 CGAGAAAGCTTCTTGAAATCTTCCTAG 60.202 40.741 0.00 0.00 42.69 3.02
2263 3164 7.684529 AGAAAGCTTCTTGAAATCTTCCTAGA 58.315 34.615 0.00 0.00 36.36 2.43
2264 3165 8.328014 AGAAAGCTTCTTGAAATCTTCCTAGAT 58.672 33.333 0.00 0.00 38.69 1.98
2293 3194 9.707957 AATATAAGGGTATTGTGGATGTTTTGA 57.292 29.630 0.00 0.00 0.00 2.69
2294 3195 5.982890 AAGGGTATTGTGGATGTTTTGAG 57.017 39.130 0.00 0.00 0.00 3.02
2295 3196 5.255397 AGGGTATTGTGGATGTTTTGAGA 57.745 39.130 0.00 0.00 0.00 3.27
2296 3197 5.831103 AGGGTATTGTGGATGTTTTGAGAT 58.169 37.500 0.00 0.00 0.00 2.75
2297 3198 6.256053 AGGGTATTGTGGATGTTTTGAGATT 58.744 36.000 0.00 0.00 0.00 2.40
2298 3199 6.725834 AGGGTATTGTGGATGTTTTGAGATTT 59.274 34.615 0.00 0.00 0.00 2.17
2299 3200 7.235399 AGGGTATTGTGGATGTTTTGAGATTTT 59.765 33.333 0.00 0.00 0.00 1.82
2300 3201 7.877612 GGGTATTGTGGATGTTTTGAGATTTTT 59.122 33.333 0.00 0.00 0.00 1.94
2301 3202 8.925700 GGTATTGTGGATGTTTTGAGATTTTTC 58.074 33.333 0.00 0.00 0.00 2.29
2302 3203 9.474920 GTATTGTGGATGTTTTGAGATTTTTCA 57.525 29.630 0.00 0.00 0.00 2.69
2304 3205 7.949903 TGTGGATGTTTTGAGATTTTTCATG 57.050 32.000 0.00 0.00 0.00 3.07
2305 3206 6.424509 TGTGGATGTTTTGAGATTTTTCATGC 59.575 34.615 0.00 0.00 0.00 4.06
2306 3207 5.933463 TGGATGTTTTGAGATTTTTCATGCC 59.067 36.000 0.00 0.00 0.00 4.40
2307 3208 5.933463 GGATGTTTTGAGATTTTTCATGCCA 59.067 36.000 0.00 0.00 0.00 4.92
2308 3209 6.427547 GGATGTTTTGAGATTTTTCATGCCAA 59.572 34.615 0.00 0.00 0.00 4.52
2309 3210 7.041235 GGATGTTTTGAGATTTTTCATGCCAAA 60.041 33.333 0.00 0.00 0.00 3.28
2310 3211 7.621428 TGTTTTGAGATTTTTCATGCCAAAA 57.379 28.000 5.42 5.42 32.00 2.44
2311 3212 8.223177 TGTTTTGAGATTTTTCATGCCAAAAT 57.777 26.923 12.68 12.68 36.69 1.82
2312 3213 8.684520 TGTTTTGAGATTTTTCATGCCAAAATT 58.315 25.926 13.57 3.03 34.61 1.82
2313 3214 9.518906 GTTTTGAGATTTTTCATGCCAAAATTT 57.481 25.926 13.57 9.80 34.61 1.82
2314 3215 9.517609 TTTTGAGATTTTTCATGCCAAAATTTG 57.482 25.926 13.57 0.00 34.61 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.916360 ACCCTTTTAGAAAAGAGAAAAGTCTAA 57.084 29.630 14.88 0.00 46.39 2.10
15 16 9.562408 CTACCCTTTTAGAAAAGAGAAAAGTCT 57.438 33.333 14.88 0.00 46.39 3.24
16 17 9.339850 ACTACCCTTTTAGAAAAGAGAAAAGTC 57.660 33.333 14.88 0.00 46.39 3.01
17 18 9.696572 AACTACCCTTTTAGAAAAGAGAAAAGT 57.303 29.630 14.88 8.53 46.39 2.66
19 20 9.128404 GGAACTACCCTTTTAGAAAAGAGAAAA 57.872 33.333 14.88 0.00 46.39 2.29
20 21 7.443272 CGGAACTACCCTTTTAGAAAAGAGAAA 59.557 37.037 14.88 0.00 46.39 2.52
21 22 6.932960 CGGAACTACCCTTTTAGAAAAGAGAA 59.067 38.462 14.88 1.06 46.39 2.87
22 23 6.042437 ACGGAACTACCCTTTTAGAAAAGAGA 59.958 38.462 14.88 1.15 46.39 3.10
23 24 6.228995 ACGGAACTACCCTTTTAGAAAAGAG 58.771 40.000 14.88 5.64 46.39 2.85
24 25 6.178607 ACGGAACTACCCTTTTAGAAAAGA 57.821 37.500 14.88 0.00 46.39 2.52
25 26 5.410746 GGACGGAACTACCCTTTTAGAAAAG 59.589 44.000 7.63 7.63 43.82 2.27
57 58 1.755179 CGAACAGGATTTGGCCTCAT 58.245 50.000 3.32 0.00 35.66 2.90
59 60 0.960364 TGCGAACAGGATTTGGCCTC 60.960 55.000 3.32 0.00 35.66 4.70
84 109 7.872113 ATTTTCTTTTAGAATCAGGAGCGAT 57.128 32.000 0.00 0.00 33.67 4.58
112 137 1.340114 GGAGGAGCGACCCAGATTTTT 60.340 52.381 0.00 0.00 40.05 1.94
113 138 0.253327 GGAGGAGCGACCCAGATTTT 59.747 55.000 0.00 0.00 40.05 1.82
114 139 0.909610 TGGAGGAGCGACCCAGATTT 60.910 55.000 0.00 0.00 40.05 2.17
309 1082 2.156051 GACGTTGGTCTTCGAGCCCT 62.156 60.000 0.00 0.00 40.15 5.19
346 1119 2.564553 ATCTGGCTCTTGACGGCGAC 62.565 60.000 16.62 8.59 0.00 5.19
388 1161 0.829990 GCTCTTCCTCTTCCTCTGGG 59.170 60.000 0.00 0.00 0.00 4.45
467 1248 3.358076 CTCCTCGACCTTCACGGGC 62.358 68.421 0.00 0.00 37.50 6.13
522 1303 2.825836 GCCTCTTGGACGCCCATG 60.826 66.667 0.00 0.00 43.12 3.66
607 1388 5.014333 AGAGATATGGACCTATAGACGGTGT 59.986 44.000 0.00 0.00 34.19 4.16
617 1413 7.891825 AGGTAGAGTAAGAGATATGGACCTA 57.108 40.000 0.00 0.00 31.87 3.08
806 1621 7.934855 ATCACAGACTTGCAAAATCTTAGAT 57.065 32.000 9.63 11.91 0.00 1.98
857 1672 1.162698 TCAGCAACTGCAGAATCAGC 58.837 50.000 23.35 15.53 45.16 4.26
885 1704 7.436080 TCAATCTAACAAAGCTTGAAGCAAAAG 59.564 33.333 20.45 8.51 45.56 2.27
890 1711 7.699812 CCTTATCAATCTAACAAAGCTTGAAGC 59.300 37.037 9.59 9.59 42.11 3.86
891 1712 8.186821 CCCTTATCAATCTAACAAAGCTTGAAG 58.813 37.037 0.00 0.00 42.11 3.02
893 1714 6.095440 GCCCTTATCAATCTAACAAAGCTTGA 59.905 38.462 0.00 0.00 42.78 3.02
895 1716 5.360999 GGCCCTTATCAATCTAACAAAGCTT 59.639 40.000 0.00 0.00 0.00 3.74
896 1717 4.889995 GGCCCTTATCAATCTAACAAAGCT 59.110 41.667 0.00 0.00 0.00 3.74
941 1767 3.561143 AGTTGGGTTGTGTGCTGAATAA 58.439 40.909 0.00 0.00 0.00 1.40
955 1781 1.072331 CTAGTGCCTGTTGAGTTGGGT 59.928 52.381 0.00 0.00 0.00 4.51
978 1804 0.886490 CCCTGAGTGCCTGTTGACAC 60.886 60.000 0.00 0.00 37.05 3.67
1015 1849 3.119708 GCCACCTTGATGACTTTGATGAC 60.120 47.826 0.00 0.00 0.00 3.06
1016 1850 3.084039 GCCACCTTGATGACTTTGATGA 58.916 45.455 0.00 0.00 0.00 2.92
1017 1851 2.821378 TGCCACCTTGATGACTTTGATG 59.179 45.455 0.00 0.00 0.00 3.07
1018 1852 3.159213 TGCCACCTTGATGACTTTGAT 57.841 42.857 0.00 0.00 0.00 2.57
1019 1853 2.655090 TGCCACCTTGATGACTTTGA 57.345 45.000 0.00 0.00 0.00 2.69
1020 1854 3.947910 ATTGCCACCTTGATGACTTTG 57.052 42.857 0.00 0.00 0.00 2.77
1021 1855 4.019174 CCTATTGCCACCTTGATGACTTT 58.981 43.478 0.00 0.00 0.00 2.66
1022 1856 3.266772 TCCTATTGCCACCTTGATGACTT 59.733 43.478 0.00 0.00 0.00 3.01
1023 1857 2.846206 TCCTATTGCCACCTTGATGACT 59.154 45.455 0.00 0.00 0.00 3.41
1139 1983 1.891060 CTCAGCGTCACGGAGCAAAC 61.891 60.000 0.00 0.00 33.71 2.93
1141 1985 2.049156 CTCAGCGTCACGGAGCAA 60.049 61.111 0.00 0.00 33.71 3.91
1149 1993 0.618981 TAGACTCCCTCTCAGCGTCA 59.381 55.000 0.00 0.00 0.00 4.35
1179 2023 0.035725 TCAGCCACAGAAGCATGGAG 60.036 55.000 0.00 0.00 38.34 3.86
1274 2160 5.100259 GTGACCAAATCAGAATCTTGCATG 58.900 41.667 0.00 0.00 38.28 4.06
1302 2194 9.897744 TTAAACAACAACATTCAGATCAAGATC 57.102 29.630 1.81 1.81 38.09 2.75
1382 2274 5.329399 ACAGTGAGGTTCAGATCTACTTCT 58.671 41.667 8.67 0.00 0.00 2.85
1446 2338 1.620822 AAGGTGGTCTTGGCATCAAC 58.379 50.000 0.00 0.00 33.76 3.18
1448 2340 2.238521 GAAAAGGTGGTCTTGGCATCA 58.761 47.619 0.00 0.00 35.55 3.07
1449 2341 2.238521 TGAAAAGGTGGTCTTGGCATC 58.761 47.619 0.00 0.00 35.55 3.91
1450 2342 2.380064 TGAAAAGGTGGTCTTGGCAT 57.620 45.000 0.00 0.00 35.55 4.40
1475 2373 7.382218 GTGAAACATAAGAAAACAGGGACATTG 59.618 37.037 0.00 0.00 36.32 2.82
1630 2531 7.496346 AGTGTAGATGATTTTGGTCCTTCTA 57.504 36.000 0.00 0.00 0.00 2.10
1765 2666 2.236146 TGCTCCATCGGACACTAATGTT 59.764 45.455 0.00 0.00 39.95 2.71
1864 2765 5.465532 TGGCAATTGAAACATCTGCTTAA 57.534 34.783 10.34 0.00 33.49 1.85
1938 2839 7.490079 GCCCGTCCTAAATTTTTCGATTAAATT 59.510 33.333 11.06 11.06 36.91 1.82
1939 2840 6.976349 GCCCGTCCTAAATTTTTCGATTAAAT 59.024 34.615 0.00 0.00 0.00 1.40
1940 2841 6.072064 TGCCCGTCCTAAATTTTTCGATTAAA 60.072 34.615 0.00 0.00 0.00 1.52
1941 2842 5.415077 TGCCCGTCCTAAATTTTTCGATTAA 59.585 36.000 0.00 0.00 0.00 1.40
1942 2843 4.942483 TGCCCGTCCTAAATTTTTCGATTA 59.058 37.500 0.00 0.00 0.00 1.75
1943 2844 3.759618 TGCCCGTCCTAAATTTTTCGATT 59.240 39.130 0.00 0.00 0.00 3.34
1944 2845 3.349022 TGCCCGTCCTAAATTTTTCGAT 58.651 40.909 0.00 0.00 0.00 3.59
1945 2846 2.780714 TGCCCGTCCTAAATTTTTCGA 58.219 42.857 0.00 0.00 0.00 3.71
1946 2847 3.775661 ATGCCCGTCCTAAATTTTTCG 57.224 42.857 0.00 0.00 0.00 3.46
1947 2848 4.202080 GGGTATGCCCGTCCTAAATTTTTC 60.202 45.833 1.89 0.00 46.51 2.29
1948 2849 3.702548 GGGTATGCCCGTCCTAAATTTTT 59.297 43.478 1.89 0.00 46.51 1.94
1949 2850 3.293337 GGGTATGCCCGTCCTAAATTTT 58.707 45.455 1.89 0.00 46.51 1.82
1950 2851 2.940158 GGGTATGCCCGTCCTAAATTT 58.060 47.619 1.89 0.00 46.51 1.82
1951 2852 2.651382 GGGTATGCCCGTCCTAAATT 57.349 50.000 1.89 0.00 46.51 1.82
1962 2863 3.222603 CAATTAAGTCCAGGGGTATGCC 58.777 50.000 0.00 0.00 0.00 4.40
1963 2864 3.222603 CCAATTAAGTCCAGGGGTATGC 58.777 50.000 0.00 0.00 0.00 3.14
1964 2865 3.832527 CCCAATTAAGTCCAGGGGTATG 58.167 50.000 0.00 0.00 35.83 2.39
1965 2866 2.177016 GCCCAATTAAGTCCAGGGGTAT 59.823 50.000 0.00 0.00 39.96 2.73
1966 2867 1.567175 GCCCAATTAAGTCCAGGGGTA 59.433 52.381 0.00 0.00 39.96 3.69
1967 2868 0.335019 GCCCAATTAAGTCCAGGGGT 59.665 55.000 0.00 0.00 39.96 4.95
1968 2869 0.397114 GGCCCAATTAAGTCCAGGGG 60.397 60.000 0.00 0.00 39.96 4.79
1969 2870 0.751643 CGGCCCAATTAAGTCCAGGG 60.752 60.000 0.00 0.00 42.55 4.45
1970 2871 0.254747 TCGGCCCAATTAAGTCCAGG 59.745 55.000 0.00 0.00 0.00 4.45
1971 2872 2.348411 ATCGGCCCAATTAAGTCCAG 57.652 50.000 0.00 0.00 0.00 3.86
1972 2873 2.818751 AATCGGCCCAATTAAGTCCA 57.181 45.000 0.00 0.00 0.00 4.02
1973 2874 4.037565 CCTTTAATCGGCCCAATTAAGTCC 59.962 45.833 14.40 0.00 31.97 3.85
1974 2875 4.643334 ACCTTTAATCGGCCCAATTAAGTC 59.357 41.667 14.40 0.00 31.97 3.01
1975 2876 4.606210 ACCTTTAATCGGCCCAATTAAGT 58.394 39.130 14.40 9.62 31.97 2.24
1976 2877 5.591067 TGTACCTTTAATCGGCCCAATTAAG 59.409 40.000 14.40 9.17 31.97 1.85
1977 2878 5.507637 TGTACCTTTAATCGGCCCAATTAA 58.492 37.500 11.97 11.97 0.00 1.40
1978 2879 5.113446 TGTACCTTTAATCGGCCCAATTA 57.887 39.130 0.00 0.00 0.00 1.40
1979 2880 3.970842 TGTACCTTTAATCGGCCCAATT 58.029 40.909 0.00 0.00 0.00 2.32
1980 2881 3.655615 TGTACCTTTAATCGGCCCAAT 57.344 42.857 0.00 0.00 0.00 3.16
1981 2882 3.436577 TTGTACCTTTAATCGGCCCAA 57.563 42.857 0.00 0.00 0.00 4.12
1982 2883 3.436577 TTTGTACCTTTAATCGGCCCA 57.563 42.857 0.00 0.00 0.00 5.36
1983 2884 4.787260 TTTTTGTACCTTTAATCGGCCC 57.213 40.909 0.00 0.00 0.00 5.80
1984 2885 7.013942 AGGATATTTTTGTACCTTTAATCGGCC 59.986 37.037 0.00 0.00 0.00 6.13
1985 2886 7.937649 AGGATATTTTTGTACCTTTAATCGGC 58.062 34.615 0.00 0.00 0.00 5.54
1986 2887 9.730420 CAAGGATATTTTTGTACCTTTAATCGG 57.270 33.333 0.00 0.00 38.65 4.18
1987 2888 9.730420 CCAAGGATATTTTTGTACCTTTAATCG 57.270 33.333 0.00 0.00 38.65 3.34
1989 2890 8.482943 GCCCAAGGATATTTTTGTACCTTTAAT 58.517 33.333 0.00 0.00 38.65 1.40
1990 2891 7.676468 AGCCCAAGGATATTTTTGTACCTTTAA 59.324 33.333 0.00 0.00 38.65 1.52
1991 2892 7.186268 AGCCCAAGGATATTTTTGTACCTTTA 58.814 34.615 0.00 0.00 38.65 1.85
1992 2893 6.022958 AGCCCAAGGATATTTTTGTACCTTT 58.977 36.000 0.00 0.00 38.65 3.11
1993 2894 5.589831 AGCCCAAGGATATTTTTGTACCTT 58.410 37.500 0.00 0.00 40.91 3.50
1994 2895 5.201243 GAGCCCAAGGATATTTTTGTACCT 58.799 41.667 0.00 0.00 0.00 3.08
1995 2896 4.953579 TGAGCCCAAGGATATTTTTGTACC 59.046 41.667 0.00 0.00 0.00 3.34
1996 2897 6.524101 TTGAGCCCAAGGATATTTTTGTAC 57.476 37.500 0.00 0.00 0.00 2.90
1997 2898 7.546250 TTTTGAGCCCAAGGATATTTTTGTA 57.454 32.000 0.00 0.00 33.23 2.41
1998 2899 6.432403 TTTTGAGCCCAAGGATATTTTTGT 57.568 33.333 0.00 0.00 33.23 2.83
1999 2900 6.372381 CCTTTTTGAGCCCAAGGATATTTTTG 59.628 38.462 0.00 0.00 39.73 2.44
2000 2901 6.475504 CCTTTTTGAGCCCAAGGATATTTTT 58.524 36.000 0.00 0.00 39.73 1.94
2001 2902 5.571454 GCCTTTTTGAGCCCAAGGATATTTT 60.571 40.000 1.21 0.00 39.73 1.82
2002 2903 4.080919 GCCTTTTTGAGCCCAAGGATATTT 60.081 41.667 1.21 0.00 39.73 1.40
2003 2904 3.452264 GCCTTTTTGAGCCCAAGGATATT 59.548 43.478 1.21 0.00 39.73 1.28
2004 2905 3.033909 GCCTTTTTGAGCCCAAGGATAT 58.966 45.455 1.21 0.00 39.73 1.63
2005 2906 2.456577 GCCTTTTTGAGCCCAAGGATA 58.543 47.619 1.21 0.00 39.73 2.59
2006 2907 1.269958 GCCTTTTTGAGCCCAAGGAT 58.730 50.000 1.21 0.00 39.73 3.24
2007 2908 0.831711 GGCCTTTTTGAGCCCAAGGA 60.832 55.000 0.00 0.00 43.76 3.36
2008 2909 1.673477 GGCCTTTTTGAGCCCAAGG 59.327 57.895 0.00 0.00 43.76 3.61
2014 2915 3.511540 AGAATAACTGGGCCTTTTTGAGC 59.488 43.478 4.53 0.00 0.00 4.26
2015 2916 4.766891 TGAGAATAACTGGGCCTTTTTGAG 59.233 41.667 4.53 0.00 0.00 3.02
2016 2917 4.735369 TGAGAATAACTGGGCCTTTTTGA 58.265 39.130 4.53 0.00 0.00 2.69
2017 2918 5.394553 GGATGAGAATAACTGGGCCTTTTTG 60.395 44.000 4.53 0.00 0.00 2.44
2018 2919 4.711846 GGATGAGAATAACTGGGCCTTTTT 59.288 41.667 4.53 0.00 0.00 1.94
2019 2920 4.281657 GGATGAGAATAACTGGGCCTTTT 58.718 43.478 4.53 0.00 0.00 2.27
2020 2921 3.685550 CGGATGAGAATAACTGGGCCTTT 60.686 47.826 4.53 0.00 0.00 3.11
2021 2922 2.158755 CGGATGAGAATAACTGGGCCTT 60.159 50.000 4.53 0.00 0.00 4.35
2022 2923 1.417890 CGGATGAGAATAACTGGGCCT 59.582 52.381 4.53 0.00 0.00 5.19
2023 2924 1.141053 ACGGATGAGAATAACTGGGCC 59.859 52.381 0.00 0.00 0.00 5.80
2024 2925 2.622064 ACGGATGAGAATAACTGGGC 57.378 50.000 0.00 0.00 0.00 5.36
2025 2926 5.531122 TCTAACGGATGAGAATAACTGGG 57.469 43.478 0.00 0.00 0.00 4.45
2026 2927 6.642950 GTGATCTAACGGATGAGAATAACTGG 59.357 42.308 0.00 0.00 34.33 4.00
2027 2928 6.642950 GGTGATCTAACGGATGAGAATAACTG 59.357 42.308 0.00 0.00 34.33 3.16
2028 2929 6.239345 GGGTGATCTAACGGATGAGAATAACT 60.239 42.308 0.00 0.00 34.33 2.24
2029 2930 5.927115 GGGTGATCTAACGGATGAGAATAAC 59.073 44.000 0.00 0.00 34.33 1.89
2030 2931 5.600898 TGGGTGATCTAACGGATGAGAATAA 59.399 40.000 0.00 0.00 34.33 1.40
2031 2932 5.144832 TGGGTGATCTAACGGATGAGAATA 58.855 41.667 0.00 0.00 34.33 1.75
2032 2933 3.967326 TGGGTGATCTAACGGATGAGAAT 59.033 43.478 0.00 0.00 34.33 2.40
2033 2934 3.371034 TGGGTGATCTAACGGATGAGAA 58.629 45.455 0.00 0.00 34.33 2.87
2034 2935 3.026707 TGGGTGATCTAACGGATGAGA 57.973 47.619 0.00 0.00 34.33 3.27
2035 2936 5.667539 ATATGGGTGATCTAACGGATGAG 57.332 43.478 0.00 0.00 34.33 2.90
2036 2937 7.733773 ATTATATGGGTGATCTAACGGATGA 57.266 36.000 0.00 0.00 34.33 2.92
2037 2938 8.474831 TGTATTATATGGGTGATCTAACGGATG 58.525 37.037 0.00 0.00 34.33 3.51
2038 2939 8.475639 GTGTATTATATGGGTGATCTAACGGAT 58.524 37.037 0.00 0.00 37.37 4.18
2039 2940 7.362315 CGTGTATTATATGGGTGATCTAACGGA 60.362 40.741 0.00 0.00 0.00 4.69
2040 2941 6.750501 CGTGTATTATATGGGTGATCTAACGG 59.249 42.308 0.00 0.00 0.00 4.44
2041 2942 7.272731 CACGTGTATTATATGGGTGATCTAACG 59.727 40.741 7.58 0.00 0.00 3.18
2042 2943 7.063074 GCACGTGTATTATATGGGTGATCTAAC 59.937 40.741 18.38 0.00 0.00 2.34
2043 2944 7.039293 AGCACGTGTATTATATGGGTGATCTAA 60.039 37.037 18.38 0.00 0.00 2.10
2044 2945 6.436218 AGCACGTGTATTATATGGGTGATCTA 59.564 38.462 18.38 0.00 0.00 1.98
2045 2946 5.246203 AGCACGTGTATTATATGGGTGATCT 59.754 40.000 18.38 0.00 0.00 2.75
2046 2947 5.479306 AGCACGTGTATTATATGGGTGATC 58.521 41.667 18.38 0.00 0.00 2.92
2047 2948 5.479306 GAGCACGTGTATTATATGGGTGAT 58.521 41.667 18.38 0.00 0.00 3.06
2048 2949 4.262292 GGAGCACGTGTATTATATGGGTGA 60.262 45.833 18.38 0.00 0.00 4.02
2049 2950 3.994392 GGAGCACGTGTATTATATGGGTG 59.006 47.826 18.38 0.00 0.00 4.61
2050 2951 3.305813 CGGAGCACGTGTATTATATGGGT 60.306 47.826 18.38 0.00 37.93 4.51
2051 2952 3.250744 CGGAGCACGTGTATTATATGGG 58.749 50.000 18.38 0.00 37.93 4.00
2052 2953 3.250744 CCGGAGCACGTGTATTATATGG 58.749 50.000 18.38 5.05 42.24 2.74
2053 2954 3.673338 CACCGGAGCACGTGTATTATATG 59.327 47.826 18.38 4.52 42.24 1.78
2054 2955 3.319972 ACACCGGAGCACGTGTATTATAT 59.680 43.478 18.38 0.00 42.24 0.86
2055 2956 2.689471 ACACCGGAGCACGTGTATTATA 59.311 45.455 18.38 0.00 42.24 0.98
2056 2957 1.479323 ACACCGGAGCACGTGTATTAT 59.521 47.619 18.38 0.00 42.24 1.28
2057 2958 0.889994 ACACCGGAGCACGTGTATTA 59.110 50.000 18.38 0.00 42.24 0.98
2058 2959 0.889994 TACACCGGAGCACGTGTATT 59.110 50.000 18.38 3.05 42.24 1.89
2059 2960 1.108776 ATACACCGGAGCACGTGTAT 58.891 50.000 18.38 7.99 40.99 2.29
2060 2961 0.889994 AATACACCGGAGCACGTGTA 59.110 50.000 18.38 5.49 40.54 2.90
2061 2962 0.889994 TAATACACCGGAGCACGTGT 59.110 50.000 18.38 2.77 42.24 4.49
2062 2963 2.218953 ATAATACACCGGAGCACGTG 57.781 50.000 9.46 12.28 42.24 4.49
2063 2964 4.304110 CATTATAATACACCGGAGCACGT 58.696 43.478 9.46 0.00 42.24 4.49
2064 2965 3.122948 GCATTATAATACACCGGAGCACG 59.877 47.826 9.46 0.00 43.80 5.34
2065 2966 4.062293 TGCATTATAATACACCGGAGCAC 58.938 43.478 9.46 0.00 0.00 4.40
2066 2967 4.062293 GTGCATTATAATACACCGGAGCA 58.938 43.478 9.46 7.85 28.49 4.26
2067 2968 3.435671 GGTGCATTATAATACACCGGAGC 59.564 47.826 25.31 11.31 41.56 4.70
2072 2973 9.738832 AAATTTTACGGTGCATTATAATACACC 57.261 29.630 27.91 27.91 45.41 4.16
2074 2975 9.953697 GGAAATTTTACGGTGCATTATAATACA 57.046 29.630 0.00 0.00 0.00 2.29
2075 2976 9.401873 GGGAAATTTTACGGTGCATTATAATAC 57.598 33.333 0.00 0.00 0.00 1.89
2076 2977 8.578151 GGGGAAATTTTACGGTGCATTATAATA 58.422 33.333 0.00 0.00 0.00 0.98
2077 2978 7.289084 AGGGGAAATTTTACGGTGCATTATAAT 59.711 33.333 0.00 0.00 0.00 1.28
2078 2979 6.608002 AGGGGAAATTTTACGGTGCATTATAA 59.392 34.615 0.00 0.00 0.00 0.98
2079 2980 6.130569 AGGGGAAATTTTACGGTGCATTATA 58.869 36.000 0.00 0.00 0.00 0.98
2080 2981 4.959839 AGGGGAAATTTTACGGTGCATTAT 59.040 37.500 0.00 0.00 0.00 1.28
2081 2982 4.345854 AGGGGAAATTTTACGGTGCATTA 58.654 39.130 0.00 0.00 0.00 1.90
2082 2983 3.169908 AGGGGAAATTTTACGGTGCATT 58.830 40.909 0.00 0.00 0.00 3.56
2083 2984 2.758423 GAGGGGAAATTTTACGGTGCAT 59.242 45.455 0.00 0.00 0.00 3.96
2084 2985 2.164338 GAGGGGAAATTTTACGGTGCA 58.836 47.619 0.00 0.00 0.00 4.57
2085 2986 1.475280 GGAGGGGAAATTTTACGGTGC 59.525 52.381 0.00 0.00 0.00 5.01
2086 2987 3.081710 AGGAGGGGAAATTTTACGGTG 57.918 47.619 0.00 0.00 0.00 4.94
2087 2988 4.932911 TTAGGAGGGGAAATTTTACGGT 57.067 40.909 0.00 0.00 0.00 4.83
2088 2989 6.406512 CCAATTTAGGAGGGGAAATTTTACGG 60.407 42.308 0.00 0.00 33.92 4.02
2089 2990 6.153851 ACCAATTTAGGAGGGGAAATTTTACG 59.846 38.462 0.00 0.00 33.92 3.18
2090 2991 7.490657 ACCAATTTAGGAGGGGAAATTTTAC 57.509 36.000 0.00 0.00 33.92 2.01
2091 2992 8.403474 AGTACCAATTTAGGAGGGGAAATTTTA 58.597 33.333 0.00 0.00 33.92 1.52
2092 2993 7.253421 AGTACCAATTTAGGAGGGGAAATTTT 58.747 34.615 0.00 0.00 33.92 1.82
2093 2994 6.811574 AGTACCAATTTAGGAGGGGAAATTT 58.188 36.000 0.00 0.00 33.92 1.82
2094 2995 6.417503 AGTACCAATTTAGGAGGGGAAATT 57.582 37.500 0.00 0.00 36.02 1.82
2095 2996 5.397559 CGAGTACCAATTTAGGAGGGGAAAT 60.398 44.000 0.00 0.00 0.00 2.17
2096 2997 4.080751 CGAGTACCAATTTAGGAGGGGAAA 60.081 45.833 0.00 0.00 0.00 3.13
2097 2998 3.453353 CGAGTACCAATTTAGGAGGGGAA 59.547 47.826 0.00 0.00 0.00 3.97
2098 2999 3.036091 CGAGTACCAATTTAGGAGGGGA 58.964 50.000 0.00 0.00 0.00 4.81
2099 3000 2.770232 ACGAGTACCAATTTAGGAGGGG 59.230 50.000 0.00 0.00 0.00 4.79
2100 3001 3.431766 CCACGAGTACCAATTTAGGAGGG 60.432 52.174 0.00 0.00 0.00 4.30
2101 3002 3.449737 TCCACGAGTACCAATTTAGGAGG 59.550 47.826 0.00 0.00 0.00 4.30
2102 3003 4.730949 TCCACGAGTACCAATTTAGGAG 57.269 45.455 0.00 0.00 0.00 3.69
2103 3004 5.687166 ATTCCACGAGTACCAATTTAGGA 57.313 39.130 0.00 0.00 0.00 2.94
2104 3005 6.753107 AAATTCCACGAGTACCAATTTAGG 57.247 37.500 0.00 0.00 0.00 2.69
2105 3006 8.079809 ACAAAAATTCCACGAGTACCAATTTAG 58.920 33.333 0.00 0.00 0.00 1.85
2106 3007 7.863375 CACAAAAATTCCACGAGTACCAATTTA 59.137 33.333 0.00 0.00 0.00 1.40
2107 3008 6.699642 CACAAAAATTCCACGAGTACCAATTT 59.300 34.615 0.00 0.00 0.00 1.82
2108 3009 6.212955 CACAAAAATTCCACGAGTACCAATT 58.787 36.000 0.00 0.00 0.00 2.32
2109 3010 5.278758 CCACAAAAATTCCACGAGTACCAAT 60.279 40.000 0.00 0.00 0.00 3.16
2110 3011 4.036971 CCACAAAAATTCCACGAGTACCAA 59.963 41.667 0.00 0.00 0.00 3.67
2111 3012 3.566322 CCACAAAAATTCCACGAGTACCA 59.434 43.478 0.00 0.00 0.00 3.25
2112 3013 3.057806 CCCACAAAAATTCCACGAGTACC 60.058 47.826 0.00 0.00 0.00 3.34
2113 3014 3.816523 TCCCACAAAAATTCCACGAGTAC 59.183 43.478 0.00 0.00 0.00 2.73
2114 3015 4.088056 TCCCACAAAAATTCCACGAGTA 57.912 40.909 0.00 0.00 0.00 2.59
2115 3016 2.938838 TCCCACAAAAATTCCACGAGT 58.061 42.857 0.00 0.00 0.00 4.18
2116 3017 3.317993 AGTTCCCACAAAAATTCCACGAG 59.682 43.478 0.00 0.00 0.00 4.18
2117 3018 3.292460 AGTTCCCACAAAAATTCCACGA 58.708 40.909 0.00 0.00 0.00 4.35
2118 3019 3.726291 AGTTCCCACAAAAATTCCACG 57.274 42.857 0.00 0.00 0.00 4.94
2119 3020 8.445275 AATAAAAGTTCCCACAAAAATTCCAC 57.555 30.769 0.00 0.00 0.00 4.02
2120 3021 9.467796 AAAATAAAAGTTCCCACAAAAATTCCA 57.532 25.926 0.00 0.00 0.00 3.53
2124 3025 9.467796 TCCAAAAATAAAAGTTCCCACAAAAAT 57.532 25.926 0.00 0.00 0.00 1.82
2125 3026 8.863872 TCCAAAAATAAAAGTTCCCACAAAAA 57.136 26.923 0.00 0.00 0.00 1.94
2164 3065 9.448438 GGCTCAAAAATTGGGTAGAATATTTTT 57.552 29.630 0.00 0.00 39.47 1.94
2165 3066 8.601546 TGGCTCAAAAATTGGGTAGAATATTTT 58.398 29.630 0.00 0.00 33.05 1.82
2166 3067 8.144862 TGGCTCAAAAATTGGGTAGAATATTT 57.855 30.769 0.00 0.00 32.32 1.40
2167 3068 7.732222 TGGCTCAAAAATTGGGTAGAATATT 57.268 32.000 0.00 0.00 32.32 1.28
2168 3069 7.732222 TTGGCTCAAAAATTGGGTAGAATAT 57.268 32.000 0.00 0.00 32.32 1.28
2169 3070 7.546250 TTTGGCTCAAAAATTGGGTAGAATA 57.454 32.000 0.00 0.00 32.32 1.75
2170 3071 6.432403 TTTGGCTCAAAAATTGGGTAGAAT 57.568 33.333 0.00 0.00 32.32 2.40
2171 3072 5.878406 TTTGGCTCAAAAATTGGGTAGAA 57.122 34.783 0.00 0.00 32.32 2.10
2172 3073 5.878406 TTTTGGCTCAAAAATTGGGTAGA 57.122 34.783 9.70 0.00 39.85 2.59
2187 3088 2.601905 AGTTGAGGAGCATTTTTGGCT 58.398 42.857 0.00 0.00 46.07 4.75
2188 3089 3.062042 CAAGTTGAGGAGCATTTTTGGC 58.938 45.455 0.00 0.00 0.00 4.52
2189 3090 4.589216 TCAAGTTGAGGAGCATTTTTGG 57.411 40.909 0.08 0.00 0.00 3.28
2190 3091 7.486802 AAATTCAAGTTGAGGAGCATTTTTG 57.513 32.000 5.56 0.00 0.00 2.44
2191 3092 7.467675 GCAAAATTCAAGTTGAGGAGCATTTTT 60.468 33.333 16.93 9.20 26.27 1.94
2192 3093 6.017687 GCAAAATTCAAGTTGAGGAGCATTTT 60.018 34.615 14.98 14.98 27.84 1.82
2193 3094 5.467735 GCAAAATTCAAGTTGAGGAGCATTT 59.532 36.000 5.56 6.20 0.00 2.32
2194 3095 4.992951 GCAAAATTCAAGTTGAGGAGCATT 59.007 37.500 5.56 0.00 0.00 3.56
2195 3096 4.282703 AGCAAAATTCAAGTTGAGGAGCAT 59.717 37.500 5.56 0.00 0.00 3.79
2196 3097 3.638160 AGCAAAATTCAAGTTGAGGAGCA 59.362 39.130 5.56 0.00 0.00 4.26
2197 3098 4.248691 AGCAAAATTCAAGTTGAGGAGC 57.751 40.909 5.56 7.54 0.00 4.70
2198 3099 7.922811 ACTAAAAGCAAAATTCAAGTTGAGGAG 59.077 33.333 5.56 0.00 0.00 3.69
2199 3100 7.781056 ACTAAAAGCAAAATTCAAGTTGAGGA 58.219 30.769 5.56 0.00 0.00 3.71
2200 3101 8.424274 AACTAAAAGCAAAATTCAAGTTGAGG 57.576 30.769 5.56 0.00 0.00 3.86
2229 3130 7.707104 ATTTCAAGAAGCTTTCTCGAAAGAAA 58.293 30.769 20.35 11.50 43.57 2.52
2230 3131 7.227512 AGATTTCAAGAAGCTTTCTCGAAAGAA 59.772 33.333 20.35 6.11 43.57 2.52
2231 3132 6.708054 AGATTTCAAGAAGCTTTCTCGAAAGA 59.292 34.615 20.35 0.10 43.57 2.52
2232 3133 6.896969 AGATTTCAAGAAGCTTTCTCGAAAG 58.103 36.000 13.62 13.62 43.57 2.62
2233 3134 6.867662 AGATTTCAAGAAGCTTTCTCGAAA 57.132 33.333 0.00 7.37 44.20 3.46
2234 3135 6.073003 GGAAGATTTCAAGAAGCTTTCTCGAA 60.073 38.462 0.00 0.00 39.61 3.71
2235 3136 5.409826 GGAAGATTTCAAGAAGCTTTCTCGA 59.590 40.000 0.00 0.00 39.61 4.04
2236 3137 5.411053 AGGAAGATTTCAAGAAGCTTTCTCG 59.589 40.000 0.00 0.00 39.61 4.04
2237 3138 6.816134 AGGAAGATTTCAAGAAGCTTTCTC 57.184 37.500 0.00 0.00 39.61 2.87
2238 3139 7.684529 TCTAGGAAGATTTCAAGAAGCTTTCT 58.315 34.615 0.00 3.42 43.15 2.52
2239 3140 7.913674 TCTAGGAAGATTTCAAGAAGCTTTC 57.086 36.000 0.00 0.00 0.00 2.62
2267 3168 9.707957 TCAAAACATCCACAATACCCTTATATT 57.292 29.630 0.00 0.00 0.00 1.28
2268 3169 9.354673 CTCAAAACATCCACAATACCCTTATAT 57.645 33.333 0.00 0.00 0.00 0.86
2269 3170 8.553153 TCTCAAAACATCCACAATACCCTTATA 58.447 33.333 0.00 0.00 0.00 0.98
2270 3171 7.410174 TCTCAAAACATCCACAATACCCTTAT 58.590 34.615 0.00 0.00 0.00 1.73
2271 3172 6.785076 TCTCAAAACATCCACAATACCCTTA 58.215 36.000 0.00 0.00 0.00 2.69
2272 3173 5.640147 TCTCAAAACATCCACAATACCCTT 58.360 37.500 0.00 0.00 0.00 3.95
2273 3174 5.255397 TCTCAAAACATCCACAATACCCT 57.745 39.130 0.00 0.00 0.00 4.34
2274 3175 6.530019 AATCTCAAAACATCCACAATACCC 57.470 37.500 0.00 0.00 0.00 3.69
2275 3176 8.831715 AAAAATCTCAAAACATCCACAATACC 57.168 30.769 0.00 0.00 0.00 2.73
2276 3177 9.474920 TGAAAAATCTCAAAACATCCACAATAC 57.525 29.630 0.00 0.00 0.00 1.89
2278 3179 8.995220 CATGAAAAATCTCAAAACATCCACAAT 58.005 29.630 0.00 0.00 0.00 2.71
2279 3180 7.041916 GCATGAAAAATCTCAAAACATCCACAA 60.042 33.333 0.00 0.00 0.00 3.33
2280 3181 6.424509 GCATGAAAAATCTCAAAACATCCACA 59.575 34.615 0.00 0.00 0.00 4.17
2281 3182 6.128472 GGCATGAAAAATCTCAAAACATCCAC 60.128 38.462 0.00 0.00 0.00 4.02
2282 3183 5.933463 GGCATGAAAAATCTCAAAACATCCA 59.067 36.000 0.00 0.00 0.00 3.41
2283 3184 5.933463 TGGCATGAAAAATCTCAAAACATCC 59.067 36.000 0.00 0.00 0.00 3.51
2284 3185 7.424227 TTGGCATGAAAAATCTCAAAACATC 57.576 32.000 0.00 0.00 0.00 3.06
2285 3186 7.804843 TTTGGCATGAAAAATCTCAAAACAT 57.195 28.000 0.00 0.00 0.00 2.71
2286 3187 7.621428 TTTTGGCATGAAAAATCTCAAAACA 57.379 28.000 0.00 0.00 30.78 2.83
2287 3188 9.518906 AAATTTTGGCATGAAAAATCTCAAAAC 57.481 25.926 15.72 0.00 36.46 2.43
2288 3189 9.517609 CAAATTTTGGCATGAAAAATCTCAAAA 57.482 25.926 15.72 0.00 36.46 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.