Multiple sequence alignment - TraesCS4A01G379200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G379200 chr4A 100.000 2903 0 0 1 2903 656749615 656746713 0.000000e+00 5361.0
1 TraesCS4A01G379200 chr4A 93.592 1623 83 9 641 2257 656550711 656552318 0.000000e+00 2401.0
2 TraesCS4A01G379200 chr4A 80.952 1218 193 23 746 1939 650831043 650832245 0.000000e+00 928.0
3 TraesCS4A01G379200 chr4A 77.303 1216 236 31 746 1939 656029996 656031193 0.000000e+00 680.0
4 TraesCS4A01G379200 chr4A 77.011 1218 210 45 779 1963 656499433 656498253 4.080000e-178 634.0
5 TraesCS4A01G379200 chr4A 77.914 978 162 39 981 1933 655659032 655659980 7.030000e-156 560.0
6 TraesCS4A01G379200 chr4A 79.420 379 66 10 1584 1954 655663943 655664317 1.030000e-64 257.0
7 TraesCS4A01G379200 chr4A 86.239 218 28 2 1 217 605540305 605540521 4.840000e-58 235.0
8 TraesCS4A01G379200 chr4A 81.148 244 39 4 734 970 655656024 655656267 3.820000e-44 189.0
9 TraesCS4A01G379200 chr4A 92.523 107 6 2 2452 2557 656553534 656553639 5.010000e-33 152.0
10 TraesCS4A01G379200 chr4A 90.991 111 5 3 2471 2576 675291913 675291803 8.380000e-31 145.0
11 TraesCS4A01G379200 chr4A 88.618 123 6 6 2477 2593 655665822 655665702 3.020000e-30 143.0
12 TraesCS4A01G379200 chr4A 91.429 105 2 3 499 596 656550525 656550629 1.400000e-28 137.0
13 TraesCS4A01G379200 chr4A 89.320 103 7 3 1 99 656549229 656549331 3.040000e-25 126.0
14 TraesCS4A01G379200 chr4A 95.161 62 0 2 2529 2588 656760636 656760696 8.560000e-16 95.3
15 TraesCS4A01G379200 chr7A 87.759 1111 85 32 295 1389 47034438 47033363 0.000000e+00 1251.0
16 TraesCS4A01G379200 chr7A 78.651 1260 222 38 732 1964 47007243 47008482 0.000000e+00 793.0
17 TraesCS4A01G379200 chr7A 76.882 1302 218 50 721 1954 47000484 47001770 0.000000e+00 660.0
18 TraesCS4A01G379200 chr7A 76.523 788 150 21 778 1539 47225296 47224518 5.830000e-107 398.0
19 TraesCS4A01G379200 chr7A 85.612 278 36 4 2627 2903 247180709 247180983 3.660000e-74 289.0
20 TraesCS4A01G379200 chr7A 95.690 116 4 1 2474 2588 47019637 47019522 4.940000e-43 185.0
21 TraesCS4A01G379200 chr7A 89.565 115 7 4 2471 2580 62888444 62888330 1.080000e-29 141.0
22 TraesCS4A01G379200 chr7A 100.000 30 0 0 2627 2656 253538286 253538257 4.040000e-04 56.5
23 TraesCS4A01G379200 chr7D 81.686 1234 184 26 746 1954 43169429 43168213 0.000000e+00 989.0
24 TraesCS4A01G379200 chr7D 79.461 1261 214 38 729 1964 44538262 44539502 0.000000e+00 852.0
25 TraesCS4A01G379200 chr7D 77.241 1305 211 50 721 1954 44530492 44531781 0.000000e+00 686.0
26 TraesCS4A01G379200 chr7D 94.000 100 4 2 2473 2571 44554611 44554513 1.800000e-32 150.0
27 TraesCS4A01G379200 chr7D 89.474 114 8 4 2446 2557 45271543 45271654 1.080000e-29 141.0
28 TraesCS4A01G379200 chr5B 92.527 281 19 1 2623 2903 462311973 462312251 4.510000e-108 401.0
29 TraesCS4A01G379200 chr1A 92.308 273 19 1 2627 2899 568461351 568461621 1.260000e-103 387.0
30 TraesCS4A01G379200 chr1A 84.116 277 40 3 2618 2894 372242578 372242850 6.170000e-67 265.0
31 TraesCS4A01G379200 chr5A 91.727 278 20 2 2627 2903 492684279 492684554 1.630000e-102 383.0
32 TraesCS4A01G379200 chr7B 85.866 283 30 6 2627 2903 645261575 645261297 2.830000e-75 292.0
33 TraesCS4A01G379200 chr3A 84.328 268 38 2 2627 2894 644721251 644721514 2.870000e-65 259.0
34 TraesCS4A01G379200 chr6A 83.395 271 34 5 2627 2897 120186361 120186102 1.040000e-59 241.0
35 TraesCS4A01G379200 chrUn 94.215 121 4 2 2470 2588 48887267 48887386 6.390000e-42 182.0
36 TraesCS4A01G379200 chrUn 90.090 111 6 4 2471 2576 354341786 354341676 3.900000e-29 139.0
37 TraesCS4A01G379200 chr3D 84.524 84 12 1 1866 1949 510331617 510331699 6.670000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G379200 chr4A 656746713 656749615 2902 True 5361.000000 5361 100.000 1 2903 1 chr4A.!!$R3 2902
1 TraesCS4A01G379200 chr4A 650831043 650832245 1202 False 928.000000 928 80.952 746 1939 1 chr4A.!!$F2 1193
2 TraesCS4A01G379200 chr4A 656549229 656553639 4410 False 704.000000 2401 91.716 1 2557 4 chr4A.!!$F6 2556
3 TraesCS4A01G379200 chr4A 656029996 656031193 1197 False 680.000000 680 77.303 746 1939 1 chr4A.!!$F3 1193
4 TraesCS4A01G379200 chr4A 656498253 656499433 1180 True 634.000000 634 77.011 779 1963 1 chr4A.!!$R2 1184
5 TraesCS4A01G379200 chr4A 655656024 655664317 8293 False 335.333333 560 79.494 734 1954 3 chr4A.!!$F5 1220
6 TraesCS4A01G379200 chr7A 47033363 47034438 1075 True 1251.000000 1251 87.759 295 1389 1 chr7A.!!$R2 1094
7 TraesCS4A01G379200 chr7A 47007243 47008482 1239 False 793.000000 793 78.651 732 1964 1 chr7A.!!$F2 1232
8 TraesCS4A01G379200 chr7A 47000484 47001770 1286 False 660.000000 660 76.882 721 1954 1 chr7A.!!$F1 1233
9 TraesCS4A01G379200 chr7A 47224518 47225296 778 True 398.000000 398 76.523 778 1539 1 chr7A.!!$R3 761
10 TraesCS4A01G379200 chr7D 43168213 43169429 1216 True 989.000000 989 81.686 746 1954 1 chr7D.!!$R1 1208
11 TraesCS4A01G379200 chr7D 44538262 44539502 1240 False 852.000000 852 79.461 729 1964 1 chr7D.!!$F2 1235
12 TraesCS4A01G379200 chr7D 44530492 44531781 1289 False 686.000000 686 77.241 721 1954 1 chr7D.!!$F1 1233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 1167 0.040958 GCTGGCTGTCGTTCACAAAG 60.041 55.0 0.0 0.0 33.31 2.77 F
972 1932 0.541863 CCCTAAAGGACATCTGCCGT 59.458 55.0 0.0 0.0 38.24 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 5491 0.174389 AGCTCACGCTCGTTGATCAT 59.826 50.0 0.00 0.0 45.15 2.45 R
2641 11800 0.104120 ATTAGGATACGTGCGCTGCA 59.896 50.0 9.73 0.0 46.39 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.238514 GGAGTAGTTATGACGATGATGCC 58.761 47.826 0.00 0.00 0.00 4.40
32 33 4.021894 GGAGTAGTTATGACGATGATGCCT 60.022 45.833 0.00 0.00 0.00 4.75
34 35 3.827008 AGTTATGACGATGATGCCTGT 57.173 42.857 0.00 0.00 0.00 4.00
42 43 1.135888 CGATGATGCCTGTGTGTTGTG 60.136 52.381 0.00 0.00 0.00 3.33
48 49 0.808125 GCCTGTGTGTTGTGTTGACA 59.192 50.000 0.00 0.00 0.00 3.58
50 51 2.731968 GCCTGTGTGTTGTGTTGACAAG 60.732 50.000 0.00 0.00 42.87 3.16
75 80 5.762045 CCTTATTTGAAGAAGTGTGTGTGG 58.238 41.667 0.00 0.00 0.00 4.17
90 95 2.556189 TGTGTGGGATATTTGTGTGTGC 59.444 45.455 0.00 0.00 0.00 4.57
108 670 4.893241 CGCTCAACGGTTTGTGAC 57.107 55.556 0.00 0.00 38.44 3.67
122 684 0.321564 TGTGACGGCTTTCATCTGGG 60.322 55.000 0.00 0.00 0.00 4.45
261 1144 2.079170 TCAGTTGAACCCAATGCCAA 57.921 45.000 0.00 0.00 34.39 4.52
278 1161 0.370273 CAATACGCTGGCTGTCGTTC 59.630 55.000 15.82 0.00 39.79 3.95
284 1167 0.040958 GCTGGCTGTCGTTCACAAAG 60.041 55.000 0.00 0.00 33.31 2.77
392 1283 6.968131 AGGAAAACTTTGAACTTTTGAAGC 57.032 33.333 0.00 0.00 0.00 3.86
393 1284 5.874810 AGGAAAACTTTGAACTTTTGAAGCC 59.125 36.000 0.00 0.00 0.00 4.35
394 1285 5.064707 GGAAAACTTTGAACTTTTGAAGCCC 59.935 40.000 0.00 0.00 0.00 5.19
395 1286 4.817318 AACTTTGAACTTTTGAAGCCCA 57.183 36.364 0.00 0.00 0.00 5.36
396 1287 4.123497 ACTTTGAACTTTTGAAGCCCAC 57.877 40.909 0.00 0.00 0.00 4.61
397 1288 2.861462 TTGAACTTTTGAAGCCCACG 57.139 45.000 0.00 0.00 0.00 4.94
469 1362 2.723618 CGGCGAAATCGGTTGTTAGTTG 60.724 50.000 0.00 0.00 40.23 3.16
482 1375 1.464997 GTTAGTTGAGCTTTCCCTGCG 59.535 52.381 0.00 0.00 35.28 5.18
484 1377 0.685097 AGTTGAGCTTTCCCTGCGTA 59.315 50.000 0.00 0.00 35.28 4.42
485 1378 1.279271 AGTTGAGCTTTCCCTGCGTAT 59.721 47.619 0.00 0.00 35.28 3.06
486 1379 2.500098 AGTTGAGCTTTCCCTGCGTATA 59.500 45.455 0.00 0.00 35.28 1.47
487 1380 2.866762 GTTGAGCTTTCCCTGCGTATAG 59.133 50.000 0.00 0.00 35.28 1.31
488 1381 2.108168 TGAGCTTTCCCTGCGTATAGT 58.892 47.619 0.00 0.00 35.28 2.12
489 1382 2.100916 TGAGCTTTCCCTGCGTATAGTC 59.899 50.000 0.00 0.00 35.28 2.59
490 1383 1.067212 AGCTTTCCCTGCGTATAGTCG 59.933 52.381 0.00 0.00 35.28 4.18
491 1384 1.066605 GCTTTCCCTGCGTATAGTCGA 59.933 52.381 0.00 0.00 0.00 4.20
492 1385 2.288273 GCTTTCCCTGCGTATAGTCGAT 60.288 50.000 0.00 0.00 0.00 3.59
493 1386 3.566523 CTTTCCCTGCGTATAGTCGATC 58.433 50.000 0.00 0.00 0.00 3.69
494 1387 2.563261 TCCCTGCGTATAGTCGATCT 57.437 50.000 0.00 0.00 0.00 2.75
549 1458 2.050350 TACCTCGCTGGAAGACGGG 61.050 63.158 1.32 0.00 39.71 5.28
626 1556 5.533154 CGTCCATTCTCCAGAGTAGAGTAAT 59.467 44.000 0.00 0.00 32.93 1.89
636 1566 5.659079 CCAGAGTAGAGTAATTCCCTTCAGT 59.341 44.000 0.00 0.00 0.00 3.41
637 1567 6.155393 CCAGAGTAGAGTAATTCCCTTCAGTT 59.845 42.308 0.00 0.00 0.00 3.16
638 1568 7.038659 CAGAGTAGAGTAATTCCCTTCAGTTG 58.961 42.308 0.00 0.00 0.00 3.16
639 1569 6.155393 AGAGTAGAGTAATTCCCTTCAGTTGG 59.845 42.308 0.00 0.00 0.00 3.77
644 1596 4.846940 AGTAATTCCCTTCAGTTGGTCTCT 59.153 41.667 0.00 0.00 0.00 3.10
655 1607 5.482908 TCAGTTGGTCTCTATCTGCTTTTC 58.517 41.667 0.00 0.00 0.00 2.29
656 1608 4.633565 CAGTTGGTCTCTATCTGCTTTTCC 59.366 45.833 0.00 0.00 0.00 3.13
658 1610 4.744795 TGGTCTCTATCTGCTTTTCCTC 57.255 45.455 0.00 0.00 0.00 3.71
660 1612 4.780021 TGGTCTCTATCTGCTTTTCCTCTT 59.220 41.667 0.00 0.00 0.00 2.85
661 1613 5.958380 TGGTCTCTATCTGCTTTTCCTCTTA 59.042 40.000 0.00 0.00 0.00 2.10
724 1677 6.074463 CGTACTAAACGTTTGCTTCTTCTTCT 60.074 38.462 23.46 0.00 46.72 2.85
725 1678 6.679327 ACTAAACGTTTGCTTCTTCTTCTT 57.321 33.333 23.46 0.00 0.00 2.52
726 1679 6.716438 ACTAAACGTTTGCTTCTTCTTCTTC 58.284 36.000 23.46 0.00 0.00 2.87
727 1680 4.553756 AACGTTTGCTTCTTCTTCTTCC 57.446 40.909 0.00 0.00 0.00 3.46
740 1693 7.142995 TCTTCTTCTTCCTCCTCTTTTCTTT 57.857 36.000 0.00 0.00 0.00 2.52
752 1707 3.815401 CTCTTTTCTTTTTCCCAGCGAGA 59.185 43.478 0.00 0.00 0.00 4.04
972 1932 0.541863 CCCTAAAGGACATCTGCCGT 59.458 55.000 0.00 0.00 38.24 5.68
1025 4742 0.600255 CCCGTCCTCCAATACGCATC 60.600 60.000 0.00 0.00 37.78 3.91
1084 4822 2.380084 TATCTTATCGCGGCAATCCC 57.620 50.000 6.13 0.00 0.00 3.85
1464 5247 3.430790 CCATAGCTGAGACATTCCGACAA 60.431 47.826 0.00 0.00 0.00 3.18
1577 5381 3.004315 ACTTTAGATGTTTGGGTGTTGCG 59.996 43.478 0.00 0.00 0.00 4.85
1596 5400 2.376808 GGGACTATGATGCCGAGATG 57.623 55.000 0.00 0.00 0.00 2.90
1601 5405 2.902486 ACTATGATGCCGAGATGTGGAT 59.098 45.455 0.00 0.00 0.00 3.41
1668 5472 5.931441 CGCTTAATTTGAAGGGGATAGAG 57.069 43.478 0.00 0.00 36.12 2.43
1684 5491 6.215636 GGGGATAGAGATTCCTAAAATGGCTA 59.784 42.308 0.00 0.00 30.15 3.93
1723 5530 3.944015 GCTATTGATTGAGCAGTGTCCTT 59.056 43.478 0.00 0.00 38.62 3.36
1939 10072 6.599244 CCATCTTAATGCTTTGGACTACTTGA 59.401 38.462 0.00 0.00 0.00 3.02
1949 10082 1.394917 GGACTACTTGATTGCTGTGCG 59.605 52.381 0.00 0.00 0.00 5.34
1954 10087 0.239082 CTTGATTGCTGTGCGCTTGA 59.761 50.000 9.73 0.00 40.11 3.02
1991 10124 4.456280 TGTCCAGTCATGTCATGTCTAC 57.544 45.455 12.54 8.85 0.00 2.59
1993 10126 3.089284 TCCAGTCATGTCATGTCTACGT 58.911 45.455 12.54 0.00 0.00 3.57
2053 10189 5.047377 ACGGAATCATTTGGTGCTTGTAAAT 60.047 36.000 0.00 0.00 0.00 1.40
2068 10204 8.026607 GTGCTTGTAAATTTTCATGCTACCTTA 58.973 33.333 25.41 10.29 36.27 2.69
2105 10241 8.713971 TGATGGTGTAAACAATGGAGTATCTAT 58.286 33.333 0.00 0.00 38.25 1.98
2152 10288 9.979578 ATGATTACTTTCAGTTTGCATGTTAAA 57.020 25.926 0.00 0.00 0.00 1.52
2187 10323 0.749649 TGGTGACAATTTGTGCCCAC 59.250 50.000 6.80 8.79 37.44 4.61
2188 10324 0.749649 GGTGACAATTTGTGCCCACA 59.250 50.000 16.88 0.00 39.98 4.17
2189 10325 1.269726 GGTGACAATTTGTGCCCACAG 60.270 52.381 16.88 0.00 42.94 3.66
2190 10326 1.039068 TGACAATTTGTGCCCACAGG 58.961 50.000 6.80 0.00 42.94 4.00
2217 10354 3.569194 TTTTGGCAGGAGTAAGTCACA 57.431 42.857 0.00 0.00 0.00 3.58
2218 10355 3.569194 TTTGGCAGGAGTAAGTCACAA 57.431 42.857 0.00 0.00 0.00 3.33
2257 10394 2.037772 ACCTTGTTGTAGTCTGCTGGAG 59.962 50.000 0.00 0.00 0.00 3.86
2258 10395 2.613977 CCTTGTTGTAGTCTGCTGGAGG 60.614 54.545 0.00 0.00 0.00 4.30
2259 10396 0.976641 TGTTGTAGTCTGCTGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2260 10397 0.391793 GTTGTAGTCTGCTGGAGGGC 60.392 60.000 0.00 0.00 0.00 5.19
2262 10399 1.260538 TGTAGTCTGCTGGAGGGCTG 61.261 60.000 0.00 0.00 0.00 4.85
2263 10400 1.687146 TAGTCTGCTGGAGGGCTGG 60.687 63.158 0.00 0.00 33.09 4.85
2265 10402 3.324930 TCTGCTGGAGGGCTGGTG 61.325 66.667 0.00 0.00 33.09 4.17
2266 10403 3.324930 CTGCTGGAGGGCTGGTGA 61.325 66.667 0.00 0.00 0.00 4.02
2268 10405 1.306911 TGCTGGAGGGCTGGTGATA 60.307 57.895 0.00 0.00 0.00 2.15
2269 10406 0.695462 TGCTGGAGGGCTGGTGATAT 60.695 55.000 0.00 0.00 0.00 1.63
2270 10407 0.475906 GCTGGAGGGCTGGTGATATT 59.524 55.000 0.00 0.00 0.00 1.28
2271 10408 1.816961 GCTGGAGGGCTGGTGATATTG 60.817 57.143 0.00 0.00 0.00 1.90
2273 10410 2.705658 CTGGAGGGCTGGTGATATTGTA 59.294 50.000 0.00 0.00 0.00 2.41
2274 10411 2.705658 TGGAGGGCTGGTGATATTGTAG 59.294 50.000 0.00 0.00 0.00 2.74
2276 10413 3.136626 GGAGGGCTGGTGATATTGTAGTT 59.863 47.826 0.00 0.00 0.00 2.24
2277 10414 4.347000 GGAGGGCTGGTGATATTGTAGTTA 59.653 45.833 0.00 0.00 0.00 2.24
2278 10415 5.511545 GGAGGGCTGGTGATATTGTAGTTAG 60.512 48.000 0.00 0.00 0.00 2.34
2279 10416 4.065789 GGGCTGGTGATATTGTAGTTAGC 58.934 47.826 0.00 0.00 0.00 3.09
2281 10418 5.011738 GGGCTGGTGATATTGTAGTTAGCTA 59.988 44.000 0.00 0.00 0.00 3.32
2282 10419 6.159988 GGCTGGTGATATTGTAGTTAGCTAG 58.840 44.000 0.00 0.00 0.00 3.42
2283 10420 6.159988 GCTGGTGATATTGTAGTTAGCTAGG 58.840 44.000 0.00 0.00 0.00 3.02
2284 10421 6.097915 TGGTGATATTGTAGTTAGCTAGGC 57.902 41.667 0.00 0.00 0.00 3.93
2289 10426 3.526931 TTGTAGTTAGCTAGGCTGCTG 57.473 47.619 17.85 1.46 43.87 4.41
2291 10428 2.832129 TGTAGTTAGCTAGGCTGCTGTT 59.168 45.455 17.85 8.44 43.87 3.16
2292 10429 4.021229 TGTAGTTAGCTAGGCTGCTGTTA 58.979 43.478 17.85 7.72 43.87 2.41
2293 10430 3.810310 AGTTAGCTAGGCTGCTGTTAG 57.190 47.619 17.85 1.12 43.87 2.34
2294 10431 2.159028 AGTTAGCTAGGCTGCTGTTAGC 60.159 50.000 17.85 17.38 43.87 3.09
2295 10432 2.601664 AGCTAGGCTGCTGTTAGCT 58.398 52.632 20.13 20.13 43.84 3.32
2296 10433 1.781786 AGCTAGGCTGCTGTTAGCTA 58.218 50.000 22.61 6.52 46.03 3.32
2297 10434 1.686052 AGCTAGGCTGCTGTTAGCTAG 59.314 52.381 22.61 14.52 46.03 3.42
2299 10436 2.801342 GCTAGGCTGCTGTTAGCTAGTG 60.801 54.545 17.63 0.00 42.97 2.74
2302 10439 2.832129 AGGCTGCTGTTAGCTAGTGTTA 59.168 45.455 0.00 0.00 42.97 2.41
2303 10440 3.452627 AGGCTGCTGTTAGCTAGTGTTAT 59.547 43.478 0.00 0.00 42.97 1.89
2304 10441 4.080863 AGGCTGCTGTTAGCTAGTGTTATT 60.081 41.667 0.00 0.00 42.97 1.40
2305 10442 4.636206 GGCTGCTGTTAGCTAGTGTTATTT 59.364 41.667 0.00 0.00 42.97 1.40
2306 10443 5.123979 GGCTGCTGTTAGCTAGTGTTATTTT 59.876 40.000 0.00 0.00 42.97 1.82
2307 10444 6.315393 GGCTGCTGTTAGCTAGTGTTATTTTA 59.685 38.462 0.00 0.00 42.97 1.52
2308 10445 7.402640 GCTGCTGTTAGCTAGTGTTATTTTAG 58.597 38.462 2.24 0.00 42.97 1.85
2309 10446 7.064728 GCTGCTGTTAGCTAGTGTTATTTTAGT 59.935 37.037 2.24 0.00 42.97 2.24
2311 10448 7.876068 TGCTGTTAGCTAGTGTTATTTTAGTGT 59.124 33.333 2.24 0.00 42.97 3.55
2328 10469 6.627395 TTAGTGTATGGTTGTGGTCTTTTG 57.373 37.500 0.00 0.00 0.00 2.44
2329 10470 3.317993 AGTGTATGGTTGTGGTCTTTTGC 59.682 43.478 0.00 0.00 0.00 3.68
2333 10474 3.971245 TGGTTGTGGTCTTTTGCTTTT 57.029 38.095 0.00 0.00 0.00 2.27
2334 10475 5.606348 ATGGTTGTGGTCTTTTGCTTTTA 57.394 34.783 0.00 0.00 0.00 1.52
2335 10476 5.606348 TGGTTGTGGTCTTTTGCTTTTAT 57.394 34.783 0.00 0.00 0.00 1.40
2336 10477 5.983540 TGGTTGTGGTCTTTTGCTTTTATT 58.016 33.333 0.00 0.00 0.00 1.40
2337 10478 5.814705 TGGTTGTGGTCTTTTGCTTTTATTG 59.185 36.000 0.00 0.00 0.00 1.90
2338 10479 5.815222 GGTTGTGGTCTTTTGCTTTTATTGT 59.185 36.000 0.00 0.00 0.00 2.71
2339 10480 6.315144 GGTTGTGGTCTTTTGCTTTTATTGTT 59.685 34.615 0.00 0.00 0.00 2.83
2340 10481 7.492994 GGTTGTGGTCTTTTGCTTTTATTGTTA 59.507 33.333 0.00 0.00 0.00 2.41
2341 10482 8.539674 GTTGTGGTCTTTTGCTTTTATTGTTAG 58.460 33.333 0.00 0.00 0.00 2.34
2343 10484 7.704472 TGTGGTCTTTTGCTTTTATTGTTAGTG 59.296 33.333 0.00 0.00 0.00 2.74
2344 10485 7.918562 GTGGTCTTTTGCTTTTATTGTTAGTGA 59.081 33.333 0.00 0.00 0.00 3.41
2345 10486 7.918562 TGGTCTTTTGCTTTTATTGTTAGTGAC 59.081 33.333 0.00 0.00 0.00 3.67
2346 10487 8.135529 GGTCTTTTGCTTTTATTGTTAGTGACT 58.864 33.333 0.00 0.00 0.00 3.41
2370 10511 6.533819 TTTTTACCGATATATCTGTTGGCG 57.466 37.500 14.07 0.00 0.00 5.69
2371 10512 2.080286 ACCGATATATCTGTTGGCGC 57.920 50.000 10.93 0.00 0.00 6.53
2372 10513 1.337823 ACCGATATATCTGTTGGCGCC 60.338 52.381 22.73 22.73 0.00 6.53
2374 10515 1.995484 CGATATATCTGTTGGCGCCTG 59.005 52.381 29.70 14.96 0.00 4.85
2375 10516 2.352715 CGATATATCTGTTGGCGCCTGA 60.353 50.000 29.70 19.70 0.00 3.86
2376 10517 2.820059 TATATCTGTTGGCGCCTGAG 57.180 50.000 29.70 19.66 0.00 3.35
2379 11191 3.429141 CTGTTGGCGCCTGAGCAG 61.429 66.667 29.70 21.25 39.83 4.24
2398 11210 4.385405 GCTCCGCTGTCAGGCTGT 62.385 66.667 15.27 0.00 0.00 4.40
2399 11211 2.345244 CTCCGCTGTCAGGCTGTT 59.655 61.111 15.27 0.00 0.00 3.16
2400 11212 1.591703 CTCCGCTGTCAGGCTGTTA 59.408 57.895 15.27 3.86 0.00 2.41
2401 11213 0.737715 CTCCGCTGTCAGGCTGTTAC 60.738 60.000 15.27 6.90 0.00 2.50
2402 11214 2.094659 CCGCTGTCAGGCTGTTACG 61.095 63.158 15.27 13.59 0.00 3.18
2403 11215 2.094659 CGCTGTCAGGCTGTTACGG 61.095 63.158 15.27 12.29 0.00 4.02
2405 11217 1.014564 GCTGTCAGGCTGTTACGGTC 61.015 60.000 15.27 4.45 0.00 4.79
2406 11218 0.317160 CTGTCAGGCTGTTACGGTCA 59.683 55.000 15.27 3.45 0.00 4.02
2408 11220 2.165641 CTGTCAGGCTGTTACGGTCATA 59.834 50.000 15.27 0.00 0.00 2.15
2409 11221 2.094390 TGTCAGGCTGTTACGGTCATAC 60.094 50.000 15.27 1.47 0.00 2.39
2410 11222 2.165845 GTCAGGCTGTTACGGTCATACT 59.834 50.000 15.27 0.00 0.00 2.12
2411 11223 3.379372 GTCAGGCTGTTACGGTCATACTA 59.621 47.826 15.27 0.00 0.00 1.82
2413 11225 2.361438 AGGCTGTTACGGTCATACTAGC 59.639 50.000 0.00 0.00 0.00 3.42
2414 11226 2.545322 GGCTGTTACGGTCATACTAGCC 60.545 54.545 0.00 0.00 42.12 3.93
2417 11229 4.299155 CTGTTACGGTCATACTAGCCATG 58.701 47.826 0.00 0.00 0.00 3.66
2418 11230 3.057734 GTTACGGTCATACTAGCCATGC 58.942 50.000 0.00 0.00 0.00 4.06
2419 11231 1.119684 ACGGTCATACTAGCCATGCA 58.880 50.000 0.00 0.00 0.00 3.96
2421 11574 2.071540 CGGTCATACTAGCCATGCATG 58.928 52.381 20.19 20.19 0.00 4.06
2425 11578 2.974794 TCATACTAGCCATGCATGTCCT 59.025 45.455 24.58 20.72 0.00 3.85
2427 11580 0.914644 ACTAGCCATGCATGTCCTGT 59.085 50.000 24.58 14.69 0.00 4.00
2428 11581 1.306148 CTAGCCATGCATGTCCTGTG 58.694 55.000 24.58 9.73 0.00 3.66
2429 11582 0.749091 TAGCCATGCATGTCCTGTGC 60.749 55.000 24.58 18.60 42.81 4.57
2438 11591 4.074259 TGCATGTCCTGTGCCATATTATC 58.926 43.478 0.00 0.00 41.83 1.75
2439 11592 4.074259 GCATGTCCTGTGCCATATTATCA 58.926 43.478 0.00 0.00 36.61 2.15
2440 11593 4.083110 GCATGTCCTGTGCCATATTATCAC 60.083 45.833 0.00 0.00 36.61 3.06
2441 11594 4.769345 TGTCCTGTGCCATATTATCACA 57.231 40.909 0.00 0.00 38.27 3.58
2502 11661 0.103937 GCTCAGATGGTAGAGCGCTT 59.896 55.000 13.26 4.13 46.53 4.68
2529 11688 0.759436 ACGCGAGAGGTATGGGGATT 60.759 55.000 15.93 0.00 0.00 3.01
2547 11706 3.202151 GGATTGATACCCCACTTCTCCAA 59.798 47.826 0.00 0.00 0.00 3.53
2549 11708 4.946160 TTGATACCCCACTTCTCCAATT 57.054 40.909 0.00 0.00 0.00 2.32
2550 11709 4.503714 TGATACCCCACTTCTCCAATTC 57.496 45.455 0.00 0.00 0.00 2.17
2577 11736 8.791327 TTTTTGCAGATCTGAATATACTGTGA 57.209 30.769 27.04 0.00 0.00 3.58
2578 11737 8.791327 TTTTGCAGATCTGAATATACTGTGAA 57.209 30.769 27.04 0.50 0.00 3.18
2579 11738 8.791327 TTTGCAGATCTGAATATACTGTGAAA 57.209 30.769 27.04 0.00 0.00 2.69
2580 11739 8.791327 TTGCAGATCTGAATATACTGTGAAAA 57.209 30.769 27.04 0.00 0.00 2.29
2581 11740 8.791327 TGCAGATCTGAATATACTGTGAAAAA 57.209 30.769 27.04 0.00 0.00 1.94
2601 11760 6.884280 AAAAACACTCCTCTTACCAATCAG 57.116 37.500 0.00 0.00 0.00 2.90
2602 11761 5.568620 AAACACTCCTCTTACCAATCAGT 57.431 39.130 0.00 0.00 0.00 3.41
2603 11762 4.810191 ACACTCCTCTTACCAATCAGTC 57.190 45.455 0.00 0.00 0.00 3.51
2604 11763 3.193691 ACACTCCTCTTACCAATCAGTCG 59.806 47.826 0.00 0.00 0.00 4.18
2605 11764 3.444034 CACTCCTCTTACCAATCAGTCGA 59.556 47.826 0.00 0.00 0.00 4.20
2606 11765 3.697045 ACTCCTCTTACCAATCAGTCGAG 59.303 47.826 0.00 0.00 0.00 4.04
2607 11766 3.697045 CTCCTCTTACCAATCAGTCGAGT 59.303 47.826 0.00 0.00 0.00 4.18
2608 11767 4.087182 TCCTCTTACCAATCAGTCGAGTT 58.913 43.478 0.00 0.00 0.00 3.01
2609 11768 4.158025 TCCTCTTACCAATCAGTCGAGTTC 59.842 45.833 0.00 0.00 0.00 3.01
2610 11769 4.158764 CCTCTTACCAATCAGTCGAGTTCT 59.841 45.833 0.00 0.00 0.00 3.01
2611 11770 5.312120 TCTTACCAATCAGTCGAGTTCTC 57.688 43.478 0.00 0.00 0.00 2.87
2612 11771 5.010933 TCTTACCAATCAGTCGAGTTCTCT 58.989 41.667 0.00 0.00 0.00 3.10
2613 11772 3.859411 ACCAATCAGTCGAGTTCTCTC 57.141 47.619 0.00 0.00 37.35 3.20
2614 11773 3.157881 ACCAATCAGTCGAGTTCTCTCA 58.842 45.455 0.00 0.00 40.44 3.27
2615 11774 3.766591 ACCAATCAGTCGAGTTCTCTCAT 59.233 43.478 0.00 0.00 40.44 2.90
2616 11775 4.221703 ACCAATCAGTCGAGTTCTCTCATT 59.778 41.667 0.00 0.00 40.44 2.57
2617 11776 5.174395 CCAATCAGTCGAGTTCTCTCATTT 58.826 41.667 0.00 0.00 40.44 2.32
2618 11777 5.063186 CCAATCAGTCGAGTTCTCTCATTTG 59.937 44.000 0.00 0.00 40.44 2.32
2619 11778 4.855715 TCAGTCGAGTTCTCTCATTTGT 57.144 40.909 0.00 0.00 40.44 2.83
2620 11779 5.201713 TCAGTCGAGTTCTCTCATTTGTT 57.798 39.130 0.00 0.00 40.44 2.83
2621 11780 6.327279 TCAGTCGAGTTCTCTCATTTGTTA 57.673 37.500 0.00 0.00 40.44 2.41
2622 11781 6.925211 TCAGTCGAGTTCTCTCATTTGTTAT 58.075 36.000 0.00 0.00 40.44 1.89
2623 11782 7.378966 TCAGTCGAGTTCTCTCATTTGTTATT 58.621 34.615 0.00 0.00 40.44 1.40
2624 11783 8.520351 TCAGTCGAGTTCTCTCATTTGTTATTA 58.480 33.333 0.00 0.00 40.44 0.98
2625 11784 9.307121 CAGTCGAGTTCTCTCATTTGTTATTAT 57.693 33.333 0.00 0.00 40.44 1.28
2626 11785 9.877178 AGTCGAGTTCTCTCATTTGTTATTATT 57.123 29.630 0.00 0.00 40.44 1.40
2637 11796 9.370126 CTCATTTGTTATTATTAGTAAGCGTGC 57.630 33.333 0.00 0.00 0.00 5.34
2638 11797 8.884726 TCATTTGTTATTATTAGTAAGCGTGCA 58.115 29.630 0.00 0.00 0.00 4.57
2639 11798 8.943925 CATTTGTTATTATTAGTAAGCGTGCAC 58.056 33.333 6.82 6.82 0.00 4.57
2640 11799 6.263615 TGTTATTATTAGTAAGCGTGCACG 57.736 37.500 34.01 34.01 43.27 5.34
2641 11800 5.806502 TGTTATTATTAGTAAGCGTGCACGT 59.193 36.000 36.80 22.79 42.22 4.49
2642 11801 4.772046 ATTATTAGTAAGCGTGCACGTG 57.228 40.909 36.80 12.28 42.22 4.49
2643 11802 0.719465 ATTAGTAAGCGTGCACGTGC 59.281 50.000 36.80 33.11 42.22 5.34
2658 11817 3.202467 TGCAGCGCACGTATCCTA 58.798 55.556 11.47 0.00 31.71 2.94
2659 11818 1.513622 TGCAGCGCACGTATCCTAA 59.486 52.632 11.47 0.00 31.71 2.69
2660 11819 0.104120 TGCAGCGCACGTATCCTAAT 59.896 50.000 11.47 0.00 31.71 1.73
2661 11820 0.784778 GCAGCGCACGTATCCTAATC 59.215 55.000 11.47 0.00 0.00 1.75
2662 11821 1.603172 GCAGCGCACGTATCCTAATCT 60.603 52.381 11.47 0.00 0.00 2.40
2663 11822 2.743938 CAGCGCACGTATCCTAATCTT 58.256 47.619 11.47 0.00 0.00 2.40
2664 11823 2.472861 CAGCGCACGTATCCTAATCTTG 59.527 50.000 11.47 0.00 0.00 3.02
2665 11824 2.100916 AGCGCACGTATCCTAATCTTGT 59.899 45.455 11.47 0.00 0.00 3.16
2666 11825 3.317149 AGCGCACGTATCCTAATCTTGTA 59.683 43.478 11.47 0.00 0.00 2.41
2667 11826 3.424529 GCGCACGTATCCTAATCTTGTAC 59.575 47.826 0.30 0.00 0.00 2.90
2668 11827 4.792057 GCGCACGTATCCTAATCTTGTACT 60.792 45.833 0.30 0.00 0.00 2.73
2669 11828 5.561532 GCGCACGTATCCTAATCTTGTACTA 60.562 44.000 0.30 0.00 0.00 1.82
2670 11829 5.850128 CGCACGTATCCTAATCTTGTACTAC 59.150 44.000 0.00 0.00 0.00 2.73
2671 11830 6.512253 CGCACGTATCCTAATCTTGTACTACA 60.512 42.308 0.00 0.00 0.00 2.74
2672 11831 7.198390 GCACGTATCCTAATCTTGTACTACAA 58.802 38.462 1.67 1.67 36.54 2.41
2673 11832 7.866393 GCACGTATCCTAATCTTGTACTACAAT 59.134 37.037 2.02 0.00 37.48 2.71
2692 11851 9.498176 ACTACAATAAAAACATAAACTCCGTCT 57.502 29.630 0.00 0.00 0.00 4.18
2704 11863 9.106070 ACATAAACTCCGTCTTATGATTTTACC 57.894 33.333 8.41 0.00 37.60 2.85
2705 11864 9.326413 CATAAACTCCGTCTTATGATTTTACCT 57.674 33.333 0.00 0.00 37.60 3.08
2706 11865 7.611213 AAACTCCGTCTTATGATTTTACCTG 57.389 36.000 0.00 0.00 0.00 4.00
2707 11866 5.671493 ACTCCGTCTTATGATTTTACCTGG 58.329 41.667 0.00 0.00 0.00 4.45
2708 11867 5.424252 ACTCCGTCTTATGATTTTACCTGGA 59.576 40.000 0.00 0.00 0.00 3.86
2709 11868 5.667466 TCCGTCTTATGATTTTACCTGGAC 58.333 41.667 0.00 0.00 0.00 4.02
2710 11869 5.188163 TCCGTCTTATGATTTTACCTGGACA 59.812 40.000 0.00 0.00 0.00 4.02
2711 11870 6.055588 CCGTCTTATGATTTTACCTGGACAT 58.944 40.000 0.00 0.00 0.00 3.06
2712 11871 6.542370 CCGTCTTATGATTTTACCTGGACATT 59.458 38.462 0.00 0.00 0.00 2.71
2713 11872 7.067008 CCGTCTTATGATTTTACCTGGACATTT 59.933 37.037 0.00 0.00 0.00 2.32
2714 11873 9.104965 CGTCTTATGATTTTACCTGGACATTTA 57.895 33.333 0.00 0.00 0.00 1.40
2721 11880 9.233649 TGATTTTACCTGGACATTTAAATACGT 57.766 29.630 0.00 0.00 0.00 3.57
2722 11881 9.498307 GATTTTACCTGGACATTTAAATACGTG 57.502 33.333 0.00 0.00 0.00 4.49
2723 11882 7.982761 TTTACCTGGACATTTAAATACGTGT 57.017 32.000 0.00 0.00 0.00 4.49
2724 11883 7.599630 TTACCTGGACATTTAAATACGTGTC 57.400 36.000 0.00 10.04 40.07 3.67
2725 11884 5.553123 ACCTGGACATTTAAATACGTGTCA 58.447 37.500 17.20 6.75 42.00 3.58
2726 11885 5.410439 ACCTGGACATTTAAATACGTGTCAC 59.590 40.000 17.20 9.85 42.00 3.67
2739 11898 3.103793 CGTGTCACGGACAATGATTTC 57.896 47.619 17.75 0.00 44.49 2.17
2740 11899 2.478514 CGTGTCACGGACAATGATTTCA 59.521 45.455 17.75 0.00 44.49 2.69
2741 11900 3.059257 CGTGTCACGGACAATGATTTCAA 60.059 43.478 17.75 0.00 44.49 2.69
2742 11901 4.378356 CGTGTCACGGACAATGATTTCAAT 60.378 41.667 17.75 0.00 44.49 2.57
2743 11902 4.853196 GTGTCACGGACAATGATTTCAATG 59.147 41.667 8.09 0.00 44.49 2.82
2744 11903 4.518590 TGTCACGGACAATGATTTCAATGT 59.481 37.500 0.98 0.98 42.19 2.71
2776 11935 9.753674 TTTATTTTAGATCAAGTCATTGGTCCT 57.246 29.630 0.00 0.00 46.08 3.85
2777 11936 7.636150 ATTTTAGATCAAGTCATTGGTCCTG 57.364 36.000 0.00 0.00 46.08 3.86
2778 11937 5.762179 TTAGATCAAGTCATTGGTCCTGT 57.238 39.130 0.00 0.00 46.08 4.00
2779 11938 4.647564 AGATCAAGTCATTGGTCCTGTT 57.352 40.909 0.00 0.00 46.08 3.16
2780 11939 4.990526 AGATCAAGTCATTGGTCCTGTTT 58.009 39.130 0.00 0.00 46.08 2.83
2781 11940 4.763793 AGATCAAGTCATTGGTCCTGTTTG 59.236 41.667 0.00 0.00 46.08 2.93
2782 11941 4.163441 TCAAGTCATTGGTCCTGTTTGA 57.837 40.909 0.00 0.00 37.02 2.69
2783 11942 3.882888 TCAAGTCATTGGTCCTGTTTGAC 59.117 43.478 0.00 0.00 37.02 3.18
2788 11947 4.058797 GGTCCTGTTTGACCGGTG 57.941 61.111 14.63 0.00 44.98 4.94
2789 11948 1.448497 GGTCCTGTTTGACCGGTGA 59.552 57.895 14.63 0.00 44.98 4.02
2790 11949 0.179040 GGTCCTGTTTGACCGGTGAA 60.179 55.000 14.63 7.32 44.98 3.18
2791 11950 1.670791 GTCCTGTTTGACCGGTGAAA 58.329 50.000 14.63 15.25 0.00 2.69
2792 11951 1.602377 GTCCTGTTTGACCGGTGAAAG 59.398 52.381 20.05 8.97 0.00 2.62
2793 11952 1.487142 TCCTGTTTGACCGGTGAAAGA 59.513 47.619 20.05 17.50 0.00 2.52
2794 11953 1.602377 CCTGTTTGACCGGTGAAAGAC 59.398 52.381 20.05 10.49 0.00 3.01
2795 11954 2.561569 CTGTTTGACCGGTGAAAGACT 58.438 47.619 20.05 0.00 0.00 3.24
2796 11955 2.943033 CTGTTTGACCGGTGAAAGACTT 59.057 45.455 20.05 0.00 0.00 3.01
2797 11956 3.349022 TGTTTGACCGGTGAAAGACTTT 58.651 40.909 20.05 0.00 0.00 2.66
2798 11957 3.375922 TGTTTGACCGGTGAAAGACTTTC 59.624 43.478 20.05 19.17 40.08 2.62
2799 11958 2.992124 TGACCGGTGAAAGACTTTCA 57.008 45.000 23.67 23.67 46.68 2.69
2819 11978 7.712264 TTTCATTGTTGAAATGTTGTGATCC 57.288 32.000 0.00 0.00 44.81 3.36
2820 11979 5.782047 TCATTGTTGAAATGTTGTGATCCC 58.218 37.500 0.00 0.00 0.00 3.85
2821 11980 5.303845 TCATTGTTGAAATGTTGTGATCCCA 59.696 36.000 0.00 0.00 0.00 4.37
2822 11981 5.604758 TTGTTGAAATGTTGTGATCCCAA 57.395 34.783 0.00 0.00 0.00 4.12
2823 11982 5.604758 TGTTGAAATGTTGTGATCCCAAA 57.395 34.783 0.00 0.00 0.00 3.28
2824 11983 5.982356 TGTTGAAATGTTGTGATCCCAAAA 58.018 33.333 0.00 0.00 0.00 2.44
2825 11984 6.590068 TGTTGAAATGTTGTGATCCCAAAAT 58.410 32.000 0.00 0.00 0.00 1.82
2826 11985 7.052873 TGTTGAAATGTTGTGATCCCAAAATT 58.947 30.769 0.84 0.84 34.45 1.82
2827 11986 7.226325 TGTTGAAATGTTGTGATCCCAAAATTC 59.774 33.333 6.77 5.93 32.35 2.17
2828 11987 6.229733 TGAAATGTTGTGATCCCAAAATTCC 58.770 36.000 6.77 0.00 32.35 3.01
2829 11988 3.932545 TGTTGTGATCCCAAAATTCCG 57.067 42.857 0.00 0.00 0.00 4.30
2830 11989 3.491342 TGTTGTGATCCCAAAATTCCGA 58.509 40.909 0.00 0.00 0.00 4.55
2831 11990 3.891977 TGTTGTGATCCCAAAATTCCGAA 59.108 39.130 0.00 0.00 0.00 4.30
2832 11991 4.342378 TGTTGTGATCCCAAAATTCCGAAA 59.658 37.500 0.00 0.00 0.00 3.46
2833 11992 5.163405 TGTTGTGATCCCAAAATTCCGAAAA 60.163 36.000 0.00 0.00 0.00 2.29
2834 11993 5.736951 TGTGATCCCAAAATTCCGAAAAT 57.263 34.783 0.00 0.00 0.00 1.82
2835 11994 6.842437 TGTGATCCCAAAATTCCGAAAATA 57.158 33.333 0.00 0.00 0.00 1.40
2836 11995 7.233389 TGTGATCCCAAAATTCCGAAAATAA 57.767 32.000 0.00 0.00 0.00 1.40
2837 11996 7.671302 TGTGATCCCAAAATTCCGAAAATAAA 58.329 30.769 0.00 0.00 0.00 1.40
2838 11997 8.150945 TGTGATCCCAAAATTCCGAAAATAAAA 58.849 29.630 0.00 0.00 0.00 1.52
2839 11998 9.161629 GTGATCCCAAAATTCCGAAAATAAAAT 57.838 29.630 0.00 0.00 0.00 1.82
2840 11999 9.160496 TGATCCCAAAATTCCGAAAATAAAATG 57.840 29.630 0.00 0.00 0.00 2.32
2841 12000 9.377312 GATCCCAAAATTCCGAAAATAAAATGA 57.623 29.630 0.00 0.00 0.00 2.57
2842 12001 9.732130 ATCCCAAAATTCCGAAAATAAAATGAA 57.268 25.926 0.00 0.00 0.00 2.57
2843 12002 9.561069 TCCCAAAATTCCGAAAATAAAATGAAA 57.439 25.926 0.00 0.00 0.00 2.69
2863 12022 2.979401 AAAATCGCGCATGTAACACA 57.021 40.000 8.75 0.00 0.00 3.72
2864 12023 2.241259 AAATCGCGCATGTAACACAC 57.759 45.000 8.75 0.00 0.00 3.82
2865 12024 1.152510 AATCGCGCATGTAACACACA 58.847 45.000 8.75 0.00 42.69 3.72
2866 12025 1.152510 ATCGCGCATGTAACACACAA 58.847 45.000 8.75 0.00 41.55 3.33
2867 12026 0.233590 TCGCGCATGTAACACACAAC 59.766 50.000 8.75 0.00 41.55 3.32
2868 12027 0.724453 CGCGCATGTAACACACAACC 60.724 55.000 8.75 0.00 41.55 3.77
2869 12028 0.309302 GCGCATGTAACACACAACCA 59.691 50.000 0.30 0.00 41.55 3.67
2870 12029 1.268794 GCGCATGTAACACACAACCAA 60.269 47.619 0.30 0.00 41.55 3.67
2871 12030 2.796383 GCGCATGTAACACACAACCAAA 60.796 45.455 0.30 0.00 41.55 3.28
2872 12031 3.439293 CGCATGTAACACACAACCAAAA 58.561 40.909 0.00 0.00 41.55 2.44
2873 12032 3.241784 CGCATGTAACACACAACCAAAAC 59.758 43.478 0.00 0.00 41.55 2.43
2874 12033 4.177026 GCATGTAACACACAACCAAAACA 58.823 39.130 0.00 0.00 41.55 2.83
2875 12034 4.032331 GCATGTAACACACAACCAAAACAC 59.968 41.667 0.00 0.00 41.55 3.32
2876 12035 4.848562 TGTAACACACAACCAAAACACA 57.151 36.364 0.00 0.00 32.95 3.72
2877 12036 5.392767 TGTAACACACAACCAAAACACAT 57.607 34.783 0.00 0.00 32.95 3.21
2878 12037 5.164233 TGTAACACACAACCAAAACACATG 58.836 37.500 0.00 0.00 32.95 3.21
2879 12038 3.951775 ACACACAACCAAAACACATGT 57.048 38.095 0.00 0.00 0.00 3.21
2880 12039 3.843999 ACACACAACCAAAACACATGTC 58.156 40.909 0.00 0.00 0.00 3.06
2881 12040 3.509575 ACACACAACCAAAACACATGTCT 59.490 39.130 0.00 0.00 0.00 3.41
2882 12041 4.021544 ACACACAACCAAAACACATGTCTT 60.022 37.500 0.00 0.00 0.00 3.01
2883 12042 4.562394 CACACAACCAAAACACATGTCTTC 59.438 41.667 0.00 0.00 0.00 2.87
2884 12043 4.219507 ACACAACCAAAACACATGTCTTCA 59.780 37.500 0.00 0.00 0.00 3.02
2885 12044 4.562394 CACAACCAAAACACATGTCTTCAC 59.438 41.667 0.00 0.00 0.00 3.18
2886 12045 4.219507 ACAACCAAAACACATGTCTTCACA 59.780 37.500 0.00 0.00 36.78 3.58
2887 12046 5.105392 ACAACCAAAACACATGTCTTCACAT 60.105 36.000 0.00 0.00 44.72 3.21
2888 12047 6.096141 ACAACCAAAACACATGTCTTCACATA 59.904 34.615 0.00 0.00 41.69 2.29
2889 12048 6.317789 ACCAAAACACATGTCTTCACATAG 57.682 37.500 0.00 0.00 41.69 2.23
2890 12049 6.061441 ACCAAAACACATGTCTTCACATAGA 58.939 36.000 0.00 0.00 41.69 1.98
2891 12050 6.545666 ACCAAAACACATGTCTTCACATAGAA 59.454 34.615 0.00 0.00 41.69 2.10
2892 12051 7.068103 ACCAAAACACATGTCTTCACATAGAAA 59.932 33.333 0.00 0.00 41.69 2.52
2893 12052 8.084073 CCAAAACACATGTCTTCACATAGAAAT 58.916 33.333 0.00 0.00 41.69 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.731968 GCCTTGTCAACACAACACACAG 60.732 50.000 0.00 0.00 37.61 3.66
32 33 1.201181 GCCTTGTCAACACAACACACA 59.799 47.619 0.00 0.00 37.61 3.72
34 35 0.814457 GGCCTTGTCAACACAACACA 59.186 50.000 0.00 0.00 37.61 3.72
42 43 5.705609 TCTTCAAATAAGGCCTTGTCAAC 57.294 39.130 28.77 0.00 0.00 3.18
48 49 5.010012 CACACACTTCTTCAAATAAGGCCTT 59.990 40.000 24.18 24.18 0.00 4.35
50 51 4.278419 ACACACACTTCTTCAAATAAGGCC 59.722 41.667 0.00 0.00 0.00 5.19
75 80 1.064060 GAGCGGCACACACAAATATCC 59.936 52.381 1.45 0.00 0.00 2.59
203 770 7.014134 TCACGTATGGTATAGATCCGGTTTTAA 59.986 37.037 0.00 0.00 0.00 1.52
251 1134 1.735360 CCAGCGTATTGGCATTGGG 59.265 57.895 0.00 0.00 34.64 4.12
261 1144 0.736325 GTGAACGACAGCCAGCGTAT 60.736 55.000 0.00 0.00 40.23 3.06
278 1161 3.713288 TGACTACGACTTGGACTTTGTG 58.287 45.455 0.00 0.00 0.00 3.33
284 1167 2.993899 CCAACATGACTACGACTTGGAC 59.006 50.000 0.00 0.00 31.49 4.02
397 1288 2.742589 CCTTTTCTTCCTTCACGCCTAC 59.257 50.000 0.00 0.00 0.00 3.18
402 1293 4.712763 CGATTTCCTTTTCTTCCTTCACG 58.287 43.478 0.00 0.00 0.00 4.35
469 1362 2.745102 GACTATACGCAGGGAAAGCTC 58.255 52.381 0.00 0.00 0.00 4.09
482 1375 4.728534 CTTGGCTGCTAGATCGACTATAC 58.271 47.826 0.00 0.00 0.00 1.47
484 1377 2.029470 GCTTGGCTGCTAGATCGACTAT 60.029 50.000 0.00 0.00 0.00 2.12
485 1378 1.338337 GCTTGGCTGCTAGATCGACTA 59.662 52.381 0.00 0.00 0.00 2.59
486 1379 0.103937 GCTTGGCTGCTAGATCGACT 59.896 55.000 0.00 0.00 0.00 4.18
487 1380 0.103937 AGCTTGGCTGCTAGATCGAC 59.896 55.000 0.00 0.00 42.10 4.20
488 1381 0.826715 AAGCTTGGCTGCTAGATCGA 59.173 50.000 0.00 0.00 43.24 3.59
489 1382 1.329906 CAAAGCTTGGCTGCTAGATCG 59.670 52.381 0.00 0.00 43.24 3.69
490 1383 2.636830 TCAAAGCTTGGCTGCTAGATC 58.363 47.619 0.00 0.00 43.24 2.75
491 1384 2.795231 TCAAAGCTTGGCTGCTAGAT 57.205 45.000 0.00 0.00 43.24 1.98
492 1385 2.636830 GATCAAAGCTTGGCTGCTAGA 58.363 47.619 0.00 7.89 43.24 2.43
493 1386 1.674962 GGATCAAAGCTTGGCTGCTAG 59.325 52.381 0.00 0.00 43.24 3.42
494 1387 1.004628 TGGATCAAAGCTTGGCTGCTA 59.995 47.619 0.00 0.00 43.24 3.49
626 1556 4.467795 CAGATAGAGACCAACTGAAGGGAA 59.532 45.833 0.00 0.00 0.00 3.97
636 1566 4.780021 AGAGGAAAAGCAGATAGAGACCAA 59.220 41.667 0.00 0.00 0.00 3.67
637 1567 4.357325 AGAGGAAAAGCAGATAGAGACCA 58.643 43.478 0.00 0.00 0.00 4.02
638 1568 5.351948 AAGAGGAAAAGCAGATAGAGACC 57.648 43.478 0.00 0.00 0.00 3.85
639 1569 8.421002 AGAATAAGAGGAAAAGCAGATAGAGAC 58.579 37.037 0.00 0.00 0.00 3.36
644 1596 9.965902 AGAAAAGAATAAGAGGAAAAGCAGATA 57.034 29.630 0.00 0.00 0.00 1.98
655 1607 9.508642 AAAGTGTTCCTAGAAAAGAATAAGAGG 57.491 33.333 0.00 0.00 0.00 3.69
660 1612 9.635404 TTGGAAAAGTGTTCCTAGAAAAGAATA 57.365 29.630 13.44 0.00 39.31 1.75
661 1613 8.533569 TTGGAAAAGTGTTCCTAGAAAAGAAT 57.466 30.769 13.44 0.00 39.31 2.40
724 1677 5.137412 TGGGAAAAAGAAAAGAGGAGGAA 57.863 39.130 0.00 0.00 0.00 3.36
725 1678 4.729868 CTGGGAAAAAGAAAAGAGGAGGA 58.270 43.478 0.00 0.00 0.00 3.71
726 1679 3.256879 GCTGGGAAAAAGAAAAGAGGAGG 59.743 47.826 0.00 0.00 0.00 4.30
727 1680 3.057946 CGCTGGGAAAAAGAAAAGAGGAG 60.058 47.826 0.00 0.00 0.00 3.69
740 1693 2.859165 ACTGATTTCTCGCTGGGAAA 57.141 45.000 6.15 6.15 37.15 3.13
752 1707 1.571919 GACGCCGAGCATACTGATTT 58.428 50.000 0.00 0.00 0.00 2.17
972 1932 1.982395 ATTGGAGGCTCCGACGACA 60.982 57.895 25.84 5.15 40.17 4.35
1025 4742 1.365699 GTGGTGTACAATGGTAGCGG 58.634 55.000 0.00 0.00 0.00 5.52
1084 4822 2.872245 CCGGGTTGCAGATGTAGTAATG 59.128 50.000 0.00 0.00 0.00 1.90
1464 5247 3.866379 TTGTGCTGGGCGGCTCATT 62.866 57.895 1.47 0.00 35.98 2.57
1577 5381 1.620819 ACATCTCGGCATCATAGTCCC 59.379 52.381 0.00 0.00 0.00 4.46
1595 5399 8.328758 AGTTAATCTGGTATTGAAAGATCCACA 58.671 33.333 0.00 0.00 30.35 4.17
1596 5400 8.738645 AGTTAATCTGGTATTGAAAGATCCAC 57.261 34.615 0.00 0.00 30.35 4.02
1668 5472 7.173218 TCGTTGATCATAGCCATTTTAGGAATC 59.827 37.037 0.00 0.00 0.00 2.52
1684 5491 0.174389 AGCTCACGCTCGTTGATCAT 59.826 50.000 0.00 0.00 45.15 2.45
1723 5530 1.371512 CGCAATGCAAAAGACGGCA 60.372 52.632 5.91 0.00 45.23 5.69
1981 10114 5.924825 AGAAGTACCAAAACGTAGACATGAC 59.075 40.000 0.00 0.00 0.00 3.06
1982 10115 6.092955 AGAAGTACCAAAACGTAGACATGA 57.907 37.500 0.00 0.00 0.00 3.07
1983 10116 7.310664 TCTAGAAGTACCAAAACGTAGACATG 58.689 38.462 0.00 0.00 0.00 3.21
1984 10117 7.458409 TCTAGAAGTACCAAAACGTAGACAT 57.542 36.000 0.00 0.00 0.00 3.06
1985 10118 6.882610 TCTAGAAGTACCAAAACGTAGACA 57.117 37.500 0.00 0.00 0.00 3.41
1986 10119 6.805760 CCTTCTAGAAGTACCAAAACGTAGAC 59.194 42.308 26.83 0.00 36.72 2.59
1991 10124 5.634020 CAGTCCTTCTAGAAGTACCAAAACG 59.366 44.000 26.83 11.36 36.72 3.60
1993 10126 6.989155 TCAGTCCTTCTAGAAGTACCAAAA 57.011 37.500 26.83 8.12 36.72 2.44
2020 10153 4.082245 ACCAAATGATTCCGTCATCCAAAC 60.082 41.667 0.00 0.00 46.80 2.93
2044 10180 8.980143 TTAAGGTAGCATGAAAATTTACAAGC 57.020 30.769 0.00 0.00 0.00 4.01
2105 10241 2.109128 TGGGGAAAACAGTTCTATGGCA 59.891 45.455 0.00 0.00 0.00 4.92
2152 10288 2.170187 TCACCATGCCTTTTGTGCTTTT 59.830 40.909 0.00 0.00 0.00 2.27
2216 10353 6.446781 AGGTGATTAAGATTGCACATCTTG 57.553 37.500 23.19 0.00 38.66 3.02
2217 10354 6.435277 ACAAGGTGATTAAGATTGCACATCTT 59.565 34.615 20.44 20.44 40.95 2.40
2218 10355 5.948162 ACAAGGTGATTAAGATTGCACATCT 59.052 36.000 5.80 5.80 33.09 2.90
2226 10363 7.119846 GCAGACTACAACAAGGTGATTAAGATT 59.880 37.037 0.00 0.00 0.00 2.40
2257 10394 4.065789 GCTAACTACAATATCACCAGCCC 58.934 47.826 0.00 0.00 0.00 5.19
2258 10395 4.962155 AGCTAACTACAATATCACCAGCC 58.038 43.478 0.00 0.00 0.00 4.85
2259 10396 6.159988 CCTAGCTAACTACAATATCACCAGC 58.840 44.000 0.00 0.00 0.00 4.85
2260 10397 6.015010 AGCCTAGCTAACTACAATATCACCAG 60.015 42.308 0.00 0.00 36.99 4.00
2262 10399 6.159988 CAGCCTAGCTAACTACAATATCACC 58.840 44.000 0.00 0.00 36.40 4.02
2263 10400 5.635700 GCAGCCTAGCTAACTACAATATCAC 59.364 44.000 0.00 0.00 36.40 3.06
2265 10402 5.866633 CAGCAGCCTAGCTAACTACAATATC 59.133 44.000 0.00 0.00 44.54 1.63
2266 10403 5.305644 ACAGCAGCCTAGCTAACTACAATAT 59.694 40.000 0.00 0.00 44.54 1.28
2268 10405 3.452627 ACAGCAGCCTAGCTAACTACAAT 59.547 43.478 0.00 0.00 44.54 2.71
2269 10406 2.832129 ACAGCAGCCTAGCTAACTACAA 59.168 45.455 0.00 0.00 44.54 2.41
2270 10407 2.457598 ACAGCAGCCTAGCTAACTACA 58.542 47.619 0.00 0.00 44.54 2.74
2271 10408 3.528597 AACAGCAGCCTAGCTAACTAC 57.471 47.619 0.00 0.00 44.54 2.73
2273 10410 2.159028 GCTAACAGCAGCCTAGCTAACT 60.159 50.000 10.26 0.00 44.54 2.24
2274 10411 2.159028 AGCTAACAGCAGCCTAGCTAAC 60.159 50.000 16.17 0.00 45.06 2.34
2276 10413 1.781786 AGCTAACAGCAGCCTAGCTA 58.218 50.000 16.17 0.00 45.06 3.32
2277 10414 2.601664 AGCTAACAGCAGCCTAGCT 58.398 52.632 13.21 13.21 45.56 3.32
2278 10415 1.410882 ACTAGCTAACAGCAGCCTAGC 59.589 52.381 9.72 9.72 45.56 3.42
2279 10416 2.428890 ACACTAGCTAACAGCAGCCTAG 59.571 50.000 0.38 0.00 45.56 3.02
2281 10418 1.270907 ACACTAGCTAACAGCAGCCT 58.729 50.000 0.38 0.00 45.56 4.58
2282 10419 2.100605 AACACTAGCTAACAGCAGCC 57.899 50.000 0.38 0.00 45.56 4.85
2283 10420 5.803020 AAATAACACTAGCTAACAGCAGC 57.197 39.130 0.38 0.00 45.56 5.25
2284 10421 8.383619 CACTAAAATAACACTAGCTAACAGCAG 58.616 37.037 0.38 0.00 45.56 4.24
2292 10429 9.162764 CAACCATACACTAAAATAACACTAGCT 57.837 33.333 0.00 0.00 0.00 3.32
2293 10430 8.943002 ACAACCATACACTAAAATAACACTAGC 58.057 33.333 0.00 0.00 0.00 3.42
2295 10432 9.221933 CCACAACCATACACTAAAATAACACTA 57.778 33.333 0.00 0.00 0.00 2.74
2296 10433 7.722285 ACCACAACCATACACTAAAATAACACT 59.278 33.333 0.00 0.00 0.00 3.55
2297 10434 7.878036 ACCACAACCATACACTAAAATAACAC 58.122 34.615 0.00 0.00 0.00 3.32
2299 10436 8.331730 AGACCACAACCATACACTAAAATAAC 57.668 34.615 0.00 0.00 0.00 1.89
2302 10439 7.833285 AAAGACCACAACCATACACTAAAAT 57.167 32.000 0.00 0.00 0.00 1.82
2303 10440 7.484975 CAAAAGACCACAACCATACACTAAAA 58.515 34.615 0.00 0.00 0.00 1.52
2304 10441 6.460399 GCAAAAGACCACAACCATACACTAAA 60.460 38.462 0.00 0.00 0.00 1.85
2305 10442 5.009210 GCAAAAGACCACAACCATACACTAA 59.991 40.000 0.00 0.00 0.00 2.24
2306 10443 4.517453 GCAAAAGACCACAACCATACACTA 59.483 41.667 0.00 0.00 0.00 2.74
2307 10444 3.317993 GCAAAAGACCACAACCATACACT 59.682 43.478 0.00 0.00 0.00 3.55
2308 10445 3.317993 AGCAAAAGACCACAACCATACAC 59.682 43.478 0.00 0.00 0.00 2.90
2309 10446 3.561143 AGCAAAAGACCACAACCATACA 58.439 40.909 0.00 0.00 0.00 2.29
2311 10448 5.606348 AAAAGCAAAAGACCACAACCATA 57.394 34.783 0.00 0.00 0.00 2.74
2317 10458 7.704472 CACTAACAATAAAAGCAAAAGACCACA 59.296 33.333 0.00 0.00 0.00 4.17
2348 10489 4.449743 GCGCCAACAGATATATCGGTAAAA 59.550 41.667 17.31 0.00 34.14 1.52
2350 10491 3.581755 GCGCCAACAGATATATCGGTAA 58.418 45.455 17.31 0.00 34.14 2.85
2351 10492 2.094390 GGCGCCAACAGATATATCGGTA 60.094 50.000 24.80 0.00 34.14 4.02
2352 10493 1.337823 GGCGCCAACAGATATATCGGT 60.338 52.381 24.80 12.14 36.79 4.69
2353 10494 1.066858 AGGCGCCAACAGATATATCGG 60.067 52.381 31.54 10.87 0.00 4.18
2354 10495 1.995484 CAGGCGCCAACAGATATATCG 59.005 52.381 31.54 5.26 0.00 2.92
2355 10496 3.257393 CTCAGGCGCCAACAGATATATC 58.743 50.000 31.54 4.42 0.00 1.63
2356 10497 2.613977 GCTCAGGCGCCAACAGATATAT 60.614 50.000 31.54 0.00 0.00 0.86
2357 10498 1.270305 GCTCAGGCGCCAACAGATATA 60.270 52.381 31.54 1.30 0.00 0.86
2358 10499 0.533755 GCTCAGGCGCCAACAGATAT 60.534 55.000 31.54 0.76 0.00 1.63
2359 10500 1.153369 GCTCAGGCGCCAACAGATA 60.153 57.895 31.54 4.15 0.00 1.98
2360 10501 2.437359 GCTCAGGCGCCAACAGAT 60.437 61.111 31.54 2.66 0.00 2.90
2362 10503 3.429141 CTGCTCAGGCGCCAACAG 61.429 66.667 31.54 24.11 42.25 3.16
2383 11195 1.292223 GTAACAGCCTGACAGCGGA 59.708 57.895 0.00 0.00 38.01 5.54
2392 11204 2.361438 GCTAGTATGACCGTAACAGCCT 59.639 50.000 0.00 0.00 0.00 4.58
2396 11208 3.491964 GCATGGCTAGTATGACCGTAACA 60.492 47.826 11.72 0.00 0.00 2.41
2397 11209 3.057734 GCATGGCTAGTATGACCGTAAC 58.942 50.000 11.72 0.00 0.00 2.50
2398 11210 2.696187 TGCATGGCTAGTATGACCGTAA 59.304 45.455 11.72 0.00 0.00 3.18
2399 11211 2.312390 TGCATGGCTAGTATGACCGTA 58.688 47.619 11.72 0.00 0.00 4.02
2400 11212 1.119684 TGCATGGCTAGTATGACCGT 58.880 50.000 11.72 0.00 0.00 4.83
2401 11213 2.071540 CATGCATGGCTAGTATGACCG 58.928 52.381 19.40 0.00 31.77 4.79
2402 11214 3.070018 GACATGCATGGCTAGTATGACC 58.930 50.000 29.41 1.64 33.93 4.02
2403 11215 3.070018 GGACATGCATGGCTAGTATGAC 58.930 50.000 30.93 8.93 35.67 3.06
2405 11217 3.072211 CAGGACATGCATGGCTAGTATG 58.928 50.000 30.93 17.57 35.67 2.39
2406 11218 2.707791 ACAGGACATGCATGGCTAGTAT 59.292 45.455 30.93 8.01 35.67 2.12
2408 11220 0.914644 ACAGGACATGCATGGCTAGT 59.085 50.000 30.93 24.89 35.67 2.57
2409 11221 1.306148 CACAGGACATGCATGGCTAG 58.694 55.000 30.93 24.26 35.67 3.42
2410 11222 0.749091 GCACAGGACATGCATGGCTA 60.749 55.000 30.93 0.00 42.88 3.93
2411 11223 2.050350 GCACAGGACATGCATGGCT 61.050 57.895 30.93 14.98 42.88 4.75
2413 11225 1.679641 TGGCACAGGACATGCATGG 60.680 57.895 29.41 14.61 45.27 3.66
2414 11226 4.005902 TGGCACAGGACATGCATG 57.994 55.556 25.09 25.09 45.27 4.06
2427 11580 9.230122 CAACATAATACCTGTGATAATATGGCA 57.770 33.333 0.00 0.00 0.00 4.92
2428 11581 9.231297 ACAACATAATACCTGTGATAATATGGC 57.769 33.333 0.00 0.00 0.00 4.40
2467 11625 4.092279 TCTGAGCTACATCCCCTGATATG 58.908 47.826 0.00 0.00 0.00 1.78
2468 11626 4.410481 TCTGAGCTACATCCCCTGATAT 57.590 45.455 0.00 0.00 0.00 1.63
2469 11627 3.903530 TCTGAGCTACATCCCCTGATA 57.096 47.619 0.00 0.00 0.00 2.15
2471 11629 2.323599 CATCTGAGCTACATCCCCTGA 58.676 52.381 0.00 0.00 0.00 3.86
2472 11630 1.347050 CCATCTGAGCTACATCCCCTG 59.653 57.143 0.00 0.00 0.00 4.45
2502 11661 1.310216 TACCTCTCGCGTGCTAAGCA 61.310 55.000 5.77 0.00 35.60 3.91
2511 11670 0.319900 CAATCCCCATACCTCTCGCG 60.320 60.000 0.00 0.00 0.00 5.87
2529 11688 4.111577 AGAATTGGAGAAGTGGGGTATCA 58.888 43.478 0.00 0.00 0.00 2.15
2556 11715 8.791327 TTTTTCACAGTATATTCAGATCTGCA 57.209 30.769 18.36 7.83 0.00 4.41
2578 11737 6.365520 ACTGATTGGTAAGAGGAGTGTTTTT 58.634 36.000 0.00 0.00 0.00 1.94
2579 11738 5.941788 ACTGATTGGTAAGAGGAGTGTTTT 58.058 37.500 0.00 0.00 0.00 2.43
2580 11739 5.552178 GACTGATTGGTAAGAGGAGTGTTT 58.448 41.667 0.00 0.00 0.00 2.83
2581 11740 4.322049 CGACTGATTGGTAAGAGGAGTGTT 60.322 45.833 0.00 0.00 0.00 3.32
2582 11741 3.193691 CGACTGATTGGTAAGAGGAGTGT 59.806 47.826 0.00 0.00 0.00 3.55
2583 11742 3.444034 TCGACTGATTGGTAAGAGGAGTG 59.556 47.826 0.00 0.00 0.00 3.51
2584 11743 3.697045 CTCGACTGATTGGTAAGAGGAGT 59.303 47.826 0.00 0.00 0.00 3.85
2585 11744 3.697045 ACTCGACTGATTGGTAAGAGGAG 59.303 47.826 0.00 0.00 32.32 3.69
2586 11745 3.698289 ACTCGACTGATTGGTAAGAGGA 58.302 45.455 0.00 0.00 32.32 3.71
2587 11746 4.158764 AGAACTCGACTGATTGGTAAGAGG 59.841 45.833 0.00 0.00 32.32 3.69
2588 11747 5.124776 AGAGAACTCGACTGATTGGTAAGAG 59.875 44.000 0.00 0.00 33.42 2.85
2589 11748 5.010933 AGAGAACTCGACTGATTGGTAAGA 58.989 41.667 0.00 0.00 34.09 2.10
2590 11749 5.106118 TGAGAGAACTCGACTGATTGGTAAG 60.106 44.000 0.00 0.00 45.25 2.34
2591 11750 4.765339 TGAGAGAACTCGACTGATTGGTAA 59.235 41.667 0.00 0.00 45.25 2.85
2592 11751 4.332828 TGAGAGAACTCGACTGATTGGTA 58.667 43.478 0.00 0.00 45.25 3.25
2593 11752 3.157881 TGAGAGAACTCGACTGATTGGT 58.842 45.455 0.00 0.00 45.25 3.67
2594 11753 3.857549 TGAGAGAACTCGACTGATTGG 57.142 47.619 0.00 0.00 45.25 3.16
2595 11754 5.636965 ACAAATGAGAGAACTCGACTGATTG 59.363 40.000 0.00 0.00 45.25 2.67
2596 11755 5.788450 ACAAATGAGAGAACTCGACTGATT 58.212 37.500 0.00 0.00 45.25 2.57
2597 11756 5.398603 ACAAATGAGAGAACTCGACTGAT 57.601 39.130 0.00 0.00 45.25 2.90
2598 11757 4.855715 ACAAATGAGAGAACTCGACTGA 57.144 40.909 0.00 0.00 45.25 3.41
2599 11758 7.588143 AATAACAAATGAGAGAACTCGACTG 57.412 36.000 0.00 0.00 45.25 3.51
2600 11759 9.877178 AATAATAACAAATGAGAGAACTCGACT 57.123 29.630 0.00 0.00 45.25 4.18
2611 11770 9.370126 GCACGCTTACTAATAATAACAAATGAG 57.630 33.333 0.00 0.00 0.00 2.90
2612 11771 8.884726 TGCACGCTTACTAATAATAACAAATGA 58.115 29.630 0.00 0.00 0.00 2.57
2613 11772 8.943925 GTGCACGCTTACTAATAATAACAAATG 58.056 33.333 0.00 0.00 0.00 2.32
2614 11773 7.849026 CGTGCACGCTTACTAATAATAACAAAT 59.151 33.333 28.16 0.00 0.00 2.32
2615 11774 7.148606 ACGTGCACGCTTACTAATAATAACAAA 60.149 33.333 37.35 0.00 44.43 2.83
2616 11775 6.310956 ACGTGCACGCTTACTAATAATAACAA 59.689 34.615 37.35 0.00 44.43 2.83
2617 11776 5.806502 ACGTGCACGCTTACTAATAATAACA 59.193 36.000 37.35 0.00 44.43 2.41
2618 11777 6.118195 CACGTGCACGCTTACTAATAATAAC 58.882 40.000 37.35 0.00 44.43 1.89
2619 11778 5.276489 GCACGTGCACGCTTACTAATAATAA 60.276 40.000 37.35 0.00 44.43 1.40
2620 11779 4.207635 GCACGTGCACGCTTACTAATAATA 59.792 41.667 37.35 0.00 44.43 0.98
2621 11780 3.000925 GCACGTGCACGCTTACTAATAAT 59.999 43.478 37.35 12.01 44.43 1.28
2622 11781 2.346244 GCACGTGCACGCTTACTAATAA 59.654 45.455 37.35 0.00 44.43 1.40
2623 11782 1.921887 GCACGTGCACGCTTACTAATA 59.078 47.619 37.35 0.00 44.43 0.98
2624 11783 0.719465 GCACGTGCACGCTTACTAAT 59.281 50.000 37.35 14.16 44.43 1.73
2625 11784 2.146954 GCACGTGCACGCTTACTAA 58.853 52.632 37.35 0.00 44.43 2.24
2626 11785 3.850923 GCACGTGCACGCTTACTA 58.149 55.556 37.35 0.00 44.43 1.82
2641 11800 0.104120 ATTAGGATACGTGCGCTGCA 59.896 50.000 9.73 0.00 46.39 4.41
2642 11801 0.784778 GATTAGGATACGTGCGCTGC 59.215 55.000 9.73 0.00 46.39 5.25
2643 11802 2.423926 AGATTAGGATACGTGCGCTG 57.576 50.000 9.73 3.37 46.39 5.18
2644 11803 2.100916 ACAAGATTAGGATACGTGCGCT 59.899 45.455 9.73 0.00 46.39 5.92
2645 11804 2.470821 ACAAGATTAGGATACGTGCGC 58.529 47.619 0.00 0.00 46.39 6.09
2646 11805 4.856664 AGTACAAGATTAGGATACGTGCG 58.143 43.478 0.00 0.00 46.39 5.34
2647 11806 6.732154 TGTAGTACAAGATTAGGATACGTGC 58.268 40.000 0.00 0.00 46.39 5.34
2685 11844 5.753921 GTCCAGGTAAAATCATAAGACGGAG 59.246 44.000 0.00 0.00 0.00 4.63
2686 11845 5.188163 TGTCCAGGTAAAATCATAAGACGGA 59.812 40.000 0.00 0.00 0.00 4.69
2687 11846 5.424757 TGTCCAGGTAAAATCATAAGACGG 58.575 41.667 0.00 0.00 0.00 4.79
2688 11847 7.553881 AATGTCCAGGTAAAATCATAAGACG 57.446 36.000 0.00 0.00 0.00 4.18
2695 11854 9.233649 ACGTATTTAAATGTCCAGGTAAAATCA 57.766 29.630 11.05 0.00 0.00 2.57
2696 11855 9.498307 CACGTATTTAAATGTCCAGGTAAAATC 57.502 33.333 11.05 0.00 0.00 2.17
2697 11856 9.016438 ACACGTATTTAAATGTCCAGGTAAAAT 57.984 29.630 11.05 0.00 0.00 1.82
2698 11857 8.393671 ACACGTATTTAAATGTCCAGGTAAAA 57.606 30.769 11.05 0.00 0.00 1.52
2699 11858 7.660617 TGACACGTATTTAAATGTCCAGGTAAA 59.339 33.333 11.05 0.00 40.63 2.01
2700 11859 7.118101 GTGACACGTATTTAAATGTCCAGGTAA 59.882 37.037 11.05 0.00 40.63 2.85
2701 11860 6.591062 GTGACACGTATTTAAATGTCCAGGTA 59.409 38.462 11.05 0.00 40.63 3.08
2702 11861 5.410439 GTGACACGTATTTAAATGTCCAGGT 59.590 40.000 11.05 0.05 40.63 4.00
2703 11862 5.445407 CGTGACACGTATTTAAATGTCCAGG 60.445 44.000 19.77 0.00 40.63 4.45
2704 11863 5.445407 CCGTGACACGTATTTAAATGTCCAG 60.445 44.000 25.18 7.47 40.58 3.86
2705 11864 4.389382 CCGTGACACGTATTTAAATGTCCA 59.611 41.667 25.18 0.66 40.58 4.02
2706 11865 4.626604 TCCGTGACACGTATTTAAATGTCC 59.373 41.667 25.18 4.99 40.58 4.02
2707 11866 5.118971 TGTCCGTGACACGTATTTAAATGTC 59.881 40.000 25.18 11.12 40.58 3.06
2708 11867 4.989797 TGTCCGTGACACGTATTTAAATGT 59.010 37.500 25.18 1.31 40.58 2.71
2709 11868 5.518529 TGTCCGTGACACGTATTTAAATG 57.481 39.130 25.18 7.86 40.58 2.32
2710 11869 6.369340 TCATTGTCCGTGACACGTATTTAAAT 59.631 34.615 25.18 13.07 42.60 1.40
2711 11870 5.695363 TCATTGTCCGTGACACGTATTTAAA 59.305 36.000 25.18 11.55 42.60 1.52
2712 11871 5.228665 TCATTGTCCGTGACACGTATTTAA 58.771 37.500 25.18 13.33 42.60 1.52
2713 11872 4.807443 TCATTGTCCGTGACACGTATTTA 58.193 39.130 25.18 8.15 42.60 1.40
2714 11873 3.655486 TCATTGTCCGTGACACGTATTT 58.345 40.909 25.18 4.75 42.60 1.40
2715 11874 3.306917 TCATTGTCCGTGACACGTATT 57.693 42.857 25.18 6.50 42.60 1.89
2716 11875 3.520290 ATCATTGTCCGTGACACGTAT 57.480 42.857 25.18 10.91 42.60 3.06
2717 11876 3.306917 AATCATTGTCCGTGACACGTA 57.693 42.857 25.18 8.35 42.60 3.57
2718 11877 2.163818 AATCATTGTCCGTGACACGT 57.836 45.000 25.18 4.71 42.60 4.49
2719 11878 2.478514 TGAAATCATTGTCCGTGACACG 59.521 45.455 21.02 21.02 42.60 4.49
2720 11879 4.481930 TTGAAATCATTGTCCGTGACAC 57.518 40.909 6.27 0.00 42.60 3.67
2721 11880 4.518590 ACATTGAAATCATTGTCCGTGACA 59.481 37.500 5.38 3.02 41.09 3.58
2722 11881 5.046910 ACATTGAAATCATTGTCCGTGAC 57.953 39.130 5.38 0.00 36.14 3.67
2723 11882 5.295431 GACATTGAAATCATTGTCCGTGA 57.705 39.130 20.09 0.00 44.80 4.35
2750 11909 9.753674 AGGACCAATGACTTGATCTAAAATAAA 57.246 29.630 0.00 0.00 34.04 1.40
2751 11910 9.177608 CAGGACCAATGACTTGATCTAAAATAA 57.822 33.333 0.00 0.00 34.04 1.40
2752 11911 8.328758 ACAGGACCAATGACTTGATCTAAAATA 58.671 33.333 0.00 0.00 34.04 1.40
2753 11912 7.177878 ACAGGACCAATGACTTGATCTAAAAT 58.822 34.615 0.00 0.00 34.04 1.82
2754 11913 6.542821 ACAGGACCAATGACTTGATCTAAAA 58.457 36.000 0.00 0.00 34.04 1.52
2755 11914 6.126863 ACAGGACCAATGACTTGATCTAAA 57.873 37.500 0.00 0.00 34.04 1.85
2756 11915 5.762179 ACAGGACCAATGACTTGATCTAA 57.238 39.130 0.00 0.00 34.04 2.10
2757 11916 5.762179 AACAGGACCAATGACTTGATCTA 57.238 39.130 0.00 0.00 34.04 1.98
2758 11917 4.647564 AACAGGACCAATGACTTGATCT 57.352 40.909 0.00 0.00 34.04 2.75
2759 11918 4.761739 TCAAACAGGACCAATGACTTGATC 59.238 41.667 0.00 0.00 34.04 2.92
2760 11919 4.520492 GTCAAACAGGACCAATGACTTGAT 59.480 41.667 10.13 0.00 37.87 2.57
2761 11920 3.882888 GTCAAACAGGACCAATGACTTGA 59.117 43.478 10.13 5.74 37.87 3.02
2762 11921 4.228912 GTCAAACAGGACCAATGACTTG 57.771 45.455 10.13 4.04 37.87 3.16
2772 11931 1.602377 CTTTCACCGGTCAAACAGGAC 59.398 52.381 2.59 0.00 36.90 3.85
2773 11932 1.487142 TCTTTCACCGGTCAAACAGGA 59.513 47.619 2.59 0.00 36.90 3.86
2774 11933 1.602377 GTCTTTCACCGGTCAAACAGG 59.398 52.381 2.59 0.00 39.46 4.00
2775 11934 2.561569 AGTCTTTCACCGGTCAAACAG 58.438 47.619 2.59 0.00 0.00 3.16
2776 11935 2.702592 AGTCTTTCACCGGTCAAACA 57.297 45.000 2.59 0.00 0.00 2.83
2777 11936 3.375922 TGAAAGTCTTTCACCGGTCAAAC 59.624 43.478 21.59 0.00 44.21 2.93
2778 11937 3.611970 TGAAAGTCTTTCACCGGTCAAA 58.388 40.909 21.59 2.73 44.21 2.69
2779 11938 3.269538 TGAAAGTCTTTCACCGGTCAA 57.730 42.857 21.59 0.00 44.21 3.18
2780 11939 2.992124 TGAAAGTCTTTCACCGGTCA 57.008 45.000 21.59 0.00 44.21 4.02
2796 11955 6.183360 TGGGATCACAACATTTCAACAATGAA 60.183 34.615 0.00 0.00 43.70 2.57
2797 11956 5.303845 TGGGATCACAACATTTCAACAATGA 59.696 36.000 0.00 0.00 0.00 2.57
2798 11957 5.539979 TGGGATCACAACATTTCAACAATG 58.460 37.500 0.00 0.00 0.00 2.82
2799 11958 5.804944 TGGGATCACAACATTTCAACAAT 57.195 34.783 0.00 0.00 0.00 2.71
2800 11959 5.604758 TTGGGATCACAACATTTCAACAA 57.395 34.783 6.21 0.00 0.00 2.83
2801 11960 5.604758 TTTGGGATCACAACATTTCAACA 57.395 34.783 10.68 0.00 0.00 3.33
2802 11961 7.307930 GGAATTTTGGGATCACAACATTTCAAC 60.308 37.037 20.20 9.60 32.58 3.18
2803 11962 6.709846 GGAATTTTGGGATCACAACATTTCAA 59.290 34.615 20.20 7.93 32.58 2.69
2804 11963 6.229733 GGAATTTTGGGATCACAACATTTCA 58.770 36.000 20.20 0.00 32.58 2.69
2805 11964 5.348451 CGGAATTTTGGGATCACAACATTTC 59.652 40.000 20.20 17.72 32.58 2.17
2806 11965 5.011533 TCGGAATTTTGGGATCACAACATTT 59.988 36.000 20.20 10.29 32.58 2.32
2807 11966 4.526262 TCGGAATTTTGGGATCACAACATT 59.474 37.500 19.52 19.52 34.46 2.71
2808 11967 4.085733 TCGGAATTTTGGGATCACAACAT 58.914 39.130 10.68 6.72 0.00 2.71
2809 11968 3.491342 TCGGAATTTTGGGATCACAACA 58.509 40.909 10.68 4.01 0.00 3.33
2810 11969 4.513198 TTCGGAATTTTGGGATCACAAC 57.487 40.909 10.68 0.00 0.00 3.32
2811 11970 5.537300 TTTTCGGAATTTTGGGATCACAA 57.463 34.783 6.21 6.21 0.00 3.33
2812 11971 5.736951 ATTTTCGGAATTTTGGGATCACA 57.263 34.783 0.00 0.00 0.00 3.58
2813 11972 8.541133 TTTTATTTTCGGAATTTTGGGATCAC 57.459 30.769 0.00 0.00 0.00 3.06
2814 11973 9.160496 CATTTTATTTTCGGAATTTTGGGATCA 57.840 29.630 0.00 0.00 0.00 2.92
2815 11974 9.377312 TCATTTTATTTTCGGAATTTTGGGATC 57.623 29.630 0.00 0.00 0.00 3.36
2816 11975 9.732130 TTCATTTTATTTTCGGAATTTTGGGAT 57.268 25.926 0.00 0.00 0.00 3.85
2817 11976 9.561069 TTTCATTTTATTTTCGGAATTTTGGGA 57.439 25.926 0.00 0.00 0.00 4.37
2843 12002 2.977169 GTGTGTTACATGCGCGATTTTT 59.023 40.909 12.10 0.00 0.00 1.94
2844 12003 2.031595 TGTGTGTTACATGCGCGATTTT 60.032 40.909 12.10 0.00 33.42 1.82
2845 12004 1.533299 TGTGTGTTACATGCGCGATTT 59.467 42.857 12.10 0.00 33.42 2.17
2846 12005 1.152510 TGTGTGTTACATGCGCGATT 58.847 45.000 12.10 0.00 33.42 3.34
2847 12006 1.136085 GTTGTGTGTTACATGCGCGAT 60.136 47.619 12.10 0.00 39.48 4.58
2848 12007 0.233590 GTTGTGTGTTACATGCGCGA 59.766 50.000 12.10 0.00 39.48 5.87
2849 12008 0.724453 GGTTGTGTGTTACATGCGCG 60.724 55.000 0.00 0.00 39.48 6.86
2850 12009 0.309302 TGGTTGTGTGTTACATGCGC 59.691 50.000 0.00 0.00 39.48 6.09
2851 12010 2.765108 TTGGTTGTGTGTTACATGCG 57.235 45.000 0.00 0.00 39.48 4.73
2852 12011 4.032331 GTGTTTTGGTTGTGTGTTACATGC 59.968 41.667 0.00 0.00 39.48 4.06
2853 12012 5.164233 TGTGTTTTGGTTGTGTGTTACATG 58.836 37.500 0.00 0.00 39.48 3.21
2854 12013 5.392767 TGTGTTTTGGTTGTGTGTTACAT 57.607 34.783 0.00 0.00 39.48 2.29
2855 12014 4.848562 TGTGTTTTGGTTGTGTGTTACA 57.151 36.364 0.00 0.00 37.56 2.41
2856 12015 5.164954 ACATGTGTTTTGGTTGTGTGTTAC 58.835 37.500 0.00 0.00 0.00 2.50
2857 12016 5.184096 AGACATGTGTTTTGGTTGTGTGTTA 59.816 36.000 1.15 0.00 0.00 2.41
2858 12017 4.021544 AGACATGTGTTTTGGTTGTGTGTT 60.022 37.500 1.15 0.00 0.00 3.32
2859 12018 3.509575 AGACATGTGTTTTGGTTGTGTGT 59.490 39.130 1.15 0.00 0.00 3.72
2860 12019 4.108699 AGACATGTGTTTTGGTTGTGTG 57.891 40.909 1.15 0.00 0.00 3.82
2861 12020 4.219507 TGAAGACATGTGTTTTGGTTGTGT 59.780 37.500 9.90 0.00 0.00 3.72
2862 12021 4.562394 GTGAAGACATGTGTTTTGGTTGTG 59.438 41.667 9.90 0.00 0.00 3.33
2863 12022 4.219507 TGTGAAGACATGTGTTTTGGTTGT 59.780 37.500 9.90 0.00 0.00 3.32
2864 12023 4.742417 TGTGAAGACATGTGTTTTGGTTG 58.258 39.130 9.90 0.00 0.00 3.77
2865 12024 5.596836 ATGTGAAGACATGTGTTTTGGTT 57.403 34.783 9.90 0.00 41.52 3.67
2866 12025 6.061441 TCTATGTGAAGACATGTGTTTTGGT 58.939 36.000 9.90 0.55 43.03 3.67
2867 12026 6.558771 TCTATGTGAAGACATGTGTTTTGG 57.441 37.500 9.90 0.00 43.03 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.