Multiple sequence alignment - TraesCS4A01G379000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G379000 chr4A 100.000 3143 0 0 1 3143 656500454 656497312 0.000000e+00 5805.0
1 TraesCS4A01G379000 chr4A 95.436 1972 77 6 587 2547 656706997 656708966 0.000000e+00 3131.0
2 TraesCS4A01G379000 chr4A 78.040 1357 241 34 924 2242 656249679 656251016 0.000000e+00 802.0
3 TraesCS4A01G379000 chr4A 77.123 1460 254 47 1022 2444 656480037 656481453 0.000000e+00 773.0
4 TraesCS4A01G379000 chr4A 77.475 1283 245 26 924 2180 656029929 656031193 0.000000e+00 728.0
5 TraesCS4A01G379000 chr4A 77.011 1218 210 45 1022 2202 656748837 656747653 4.420000e-178 634.0
6 TraesCS4A01G379000 chr4A 85.008 627 51 15 2500 3090 656708991 656709610 5.800000e-167 597.0
7 TraesCS4A01G379000 chr4A 76.234 1216 223 44 1022 2202 656550844 656552028 4.520000e-163 584.0
8 TraesCS4A01G379000 chr4A 81.492 697 110 10 1507 2190 655442941 655443631 3.540000e-154 555.0
9 TraesCS4A01G379000 chr4A 79.733 750 130 13 1511 2242 656472942 656473687 9.990000e-145 523.0
10 TraesCS4A01G379000 chr4A 81.646 632 97 14 1824 2444 655663943 655664566 1.010000e-139 507.0
11 TraesCS4A01G379000 chr4A 85.591 347 25 12 1 346 656706682 656707004 1.080000e-89 340.0
12 TraesCS4A01G379000 chr7D 79.265 1360 213 46 924 2242 44538210 44539541 0.000000e+00 885.0
13 TraesCS4A01G379000 chr7D 78.907 1043 175 25 1506 2510 44531074 44532109 0.000000e+00 665.0
14 TraesCS4A01G379000 chr7D 78.888 971 157 33 1320 2260 44550971 44551923 5.760000e-172 614.0
15 TraesCS4A01G379000 chr7A 78.687 1356 223 43 924 2242 47007195 47008521 0.000000e+00 843.0
16 TraesCS4A01G379000 chr7A 79.855 963 160 20 1506 2443 47001066 47002019 0.000000e+00 673.0
17 TraesCS4A01G379000 chr5B 94.048 252 2 1 342 580 118947997 118947746 1.380000e-98 370.0
18 TraesCS4A01G379000 chr2B 94.000 250 1 2 344 580 777172112 777172360 1.780000e-97 366.0
19 TraesCS4A01G379000 chr2B 92.857 252 3 3 342 580 248136713 248136464 4.990000e-93 351.0
20 TraesCS4A01G379000 chr1B 94.000 250 1 2 344 580 33936311 33936063 1.780000e-97 366.0
21 TraesCS4A01G379000 chr3B 90.588 255 10 2 340 580 553569945 553569691 3.020000e-85 326.0
22 TraesCS4A01G379000 chr5D 87.747 253 16 4 342 580 353841778 353842029 6.640000e-72 281.0
23 TraesCS4A01G379000 chr2A 91.124 169 7 6 348 514 698124862 698125024 4.080000e-54 222.0
24 TraesCS4A01G379000 chrUn 100.000 28 0 0 2933 2960 48889932 48889905 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G379000 chr4A 656497312 656500454 3142 True 5805 5805 100.000000 1 3143 1 chr4A.!!$R1 3142
1 TraesCS4A01G379000 chr4A 656706682 656709610 2928 False 1356 3131 88.678333 1 3090 3 chr4A.!!$F8 3089
2 TraesCS4A01G379000 chr4A 656249679 656251016 1337 False 802 802 78.040000 924 2242 1 chr4A.!!$F4 1318
3 TraesCS4A01G379000 chr4A 656480037 656481453 1416 False 773 773 77.123000 1022 2444 1 chr4A.!!$F6 1422
4 TraesCS4A01G379000 chr4A 656029929 656031193 1264 False 728 728 77.475000 924 2180 1 chr4A.!!$F3 1256
5 TraesCS4A01G379000 chr4A 656747653 656748837 1184 True 634 634 77.011000 1022 2202 1 chr4A.!!$R2 1180
6 TraesCS4A01G379000 chr4A 656550844 656552028 1184 False 584 584 76.234000 1022 2202 1 chr4A.!!$F7 1180
7 TraesCS4A01G379000 chr4A 655442941 655443631 690 False 555 555 81.492000 1507 2190 1 chr4A.!!$F1 683
8 TraesCS4A01G379000 chr4A 656472942 656473687 745 False 523 523 79.733000 1511 2242 1 chr4A.!!$F5 731
9 TraesCS4A01G379000 chr4A 655663943 655664566 623 False 507 507 81.646000 1824 2444 1 chr4A.!!$F2 620
10 TraesCS4A01G379000 chr7D 44538210 44539541 1331 False 885 885 79.265000 924 2242 1 chr7D.!!$F2 1318
11 TraesCS4A01G379000 chr7D 44531074 44532109 1035 False 665 665 78.907000 1506 2510 1 chr7D.!!$F1 1004
12 TraesCS4A01G379000 chr7D 44550971 44551923 952 False 614 614 78.888000 1320 2260 1 chr7D.!!$F3 940
13 TraesCS4A01G379000 chr7A 47007195 47008521 1326 False 843 843 78.687000 924 2242 1 chr7A.!!$F2 1318
14 TraesCS4A01G379000 chr7A 47001066 47002019 953 False 673 673 79.855000 1506 2443 1 chr7A.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 450 0.033504 ACACTGCACTACAAGACCCG 59.966 55.0 0.0 0.0 0.00 5.28 F
575 578 0.105709 TGGCCATAGACGGATCTGGA 60.106 55.0 0.0 0.0 36.29 3.86 F
747 751 0.110688 CGCCGATTATGACCATTGCG 60.111 55.0 0.0 0.0 34.52 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1958 1.382522 TGATCCTCAAATCAAGCGGC 58.617 50.000 0.0 0.0 32.80 6.53 R
2000 2078 2.485426 TGCTCTTCGCTTTCCAGATTTG 59.515 45.455 0.0 0.0 40.11 2.32 R
2663 2878 0.706433 ACCCCAGCATCACTTCCAAT 59.294 50.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.666189 GAATCCGCTGCCAGAGTAAAC 59.334 52.381 0.00 0.00 0.00 2.01
41 42 0.450184 GCTCTCGTCTCTGTCTGTCC 59.550 60.000 0.00 0.00 0.00 4.02
80 81 3.766676 GATAGATCTATCGCCGAAGCA 57.233 47.619 23.55 0.00 39.83 3.91
103 104 0.108662 CTTTCTTGCCCCAAATCCGC 60.109 55.000 0.00 0.00 0.00 5.54
104 105 0.829602 TTTCTTGCCCCAAATCCGCA 60.830 50.000 0.00 0.00 0.00 5.69
145 146 0.389757 TGTCCGTTTCCATGTGTCGA 59.610 50.000 0.00 0.00 0.00 4.20
152 153 4.511454 CCGTTTCCATGTGTCGAATGATAT 59.489 41.667 0.00 0.00 0.00 1.63
156 157 4.798574 TCCATGTGTCGAATGATATCTCG 58.201 43.478 3.98 6.17 36.39 4.04
159 160 5.463392 CCATGTGTCGAATGATATCTCGTTT 59.537 40.000 12.49 0.00 36.46 3.60
167 168 5.601662 GAATGATATCTCGTTTCTCCACCA 58.398 41.667 3.98 0.00 30.62 4.17
181 182 4.104086 TCTCCACCACTCCTACATTTGAT 58.896 43.478 0.00 0.00 0.00 2.57
185 186 5.044919 TCCACCACTCCTACATTTGATGAAT 60.045 40.000 0.00 0.00 0.00 2.57
219 221 1.415374 CGATGAACACGGACGAAACT 58.585 50.000 0.00 0.00 0.00 2.66
220 222 1.124297 CGATGAACACGGACGAAACTG 59.876 52.381 0.00 0.00 0.00 3.16
221 223 0.865769 ATGAACACGGACGAAACTGC 59.134 50.000 0.00 0.00 0.00 4.40
222 224 0.179094 TGAACACGGACGAAACTGCT 60.179 50.000 0.00 0.00 0.00 4.24
223 225 0.232303 GAACACGGACGAAACTGCTG 59.768 55.000 0.00 0.00 0.00 4.41
224 226 0.461339 AACACGGACGAAACTGCTGT 60.461 50.000 0.00 0.00 0.00 4.40
225 227 0.386476 ACACGGACGAAACTGCTGTA 59.614 50.000 0.00 0.00 0.00 2.74
226 228 1.060713 CACGGACGAAACTGCTGTAG 58.939 55.000 0.00 0.00 0.00 2.74
227 229 0.666577 ACGGACGAAACTGCTGTAGC 60.667 55.000 0.00 0.00 42.50 3.58
228 230 0.388649 CGGACGAAACTGCTGTAGCT 60.389 55.000 5.38 0.00 42.66 3.32
229 231 1.797025 GGACGAAACTGCTGTAGCTT 58.203 50.000 5.38 0.00 42.66 3.74
230 232 1.461127 GGACGAAACTGCTGTAGCTTG 59.539 52.381 5.38 1.22 42.66 4.01
231 233 2.404215 GACGAAACTGCTGTAGCTTGA 58.596 47.619 5.38 0.00 42.66 3.02
232 234 2.408050 ACGAAACTGCTGTAGCTTGAG 58.592 47.619 5.38 0.00 42.66 3.02
233 235 2.224066 ACGAAACTGCTGTAGCTTGAGT 60.224 45.455 5.38 0.00 42.66 3.41
234 236 2.802816 CGAAACTGCTGTAGCTTGAGTT 59.197 45.455 5.38 4.12 42.66 3.01
235 237 3.120854 CGAAACTGCTGTAGCTTGAGTTC 60.121 47.826 5.38 6.88 42.66 3.01
236 238 3.475566 AACTGCTGTAGCTTGAGTTCA 57.524 42.857 5.38 0.00 42.66 3.18
237 239 3.692257 ACTGCTGTAGCTTGAGTTCAT 57.308 42.857 5.38 0.00 42.66 2.57
238 240 4.013267 ACTGCTGTAGCTTGAGTTCATT 57.987 40.909 5.38 0.00 42.66 2.57
239 241 5.152623 ACTGCTGTAGCTTGAGTTCATTA 57.847 39.130 5.38 0.00 42.66 1.90
240 242 5.174395 ACTGCTGTAGCTTGAGTTCATTAG 58.826 41.667 5.38 0.00 42.66 1.73
241 243 5.047021 ACTGCTGTAGCTTGAGTTCATTAGA 60.047 40.000 5.38 0.00 42.66 2.10
242 244 5.793817 TGCTGTAGCTTGAGTTCATTAGAA 58.206 37.500 5.38 0.00 42.66 2.10
310 313 7.594714 TCTAGATTTTAGATCCGTGTAGATGC 58.405 38.462 0.00 0.00 0.00 3.91
387 390 8.511604 AGTGAGTTTTATTCCATGAACATAGG 57.488 34.615 0.00 0.00 0.00 2.57
388 391 7.557719 AGTGAGTTTTATTCCATGAACATAGGG 59.442 37.037 0.00 0.00 0.00 3.53
389 392 7.556275 GTGAGTTTTATTCCATGAACATAGGGA 59.444 37.037 0.00 0.00 0.00 4.20
390 393 8.281531 TGAGTTTTATTCCATGAACATAGGGAT 58.718 33.333 0.00 0.00 0.00 3.85
391 394 9.793259 GAGTTTTATTCCATGAACATAGGGATA 57.207 33.333 0.00 0.00 0.00 2.59
392 395 9.574516 AGTTTTATTCCATGAACATAGGGATAC 57.425 33.333 0.00 0.00 0.00 2.24
393 396 9.349713 GTTTTATTCCATGAACATAGGGATACA 57.650 33.333 0.00 0.00 39.74 2.29
394 397 9.928618 TTTTATTCCATGAACATAGGGATACAA 57.071 29.630 0.00 0.00 39.74 2.41
396 399 9.739276 TTATTCCATGAACATAGGGATACAATC 57.261 33.333 0.00 0.00 39.74 2.67
397 400 6.762077 TCCATGAACATAGGGATACAATCA 57.238 37.500 0.00 0.00 39.74 2.57
398 401 6.533730 TCCATGAACATAGGGATACAATCAC 58.466 40.000 0.00 0.00 39.74 3.06
399 402 5.409520 CCATGAACATAGGGATACAATCACG 59.590 44.000 0.00 0.00 37.89 4.35
400 403 5.607939 TGAACATAGGGATACAATCACGT 57.392 39.130 0.00 0.00 37.89 4.49
401 404 5.356426 TGAACATAGGGATACAATCACGTG 58.644 41.667 9.94 9.94 37.89 4.49
402 405 4.336889 ACATAGGGATACAATCACGTGG 57.663 45.455 17.00 1.74 37.89 4.94
403 406 2.902705 TAGGGATACAATCACGTGGC 57.097 50.000 17.00 0.00 37.89 5.01
404 407 0.908910 AGGGATACAATCACGTGGCA 59.091 50.000 17.00 0.00 37.89 4.92
405 408 1.014352 GGGATACAATCACGTGGCAC 58.986 55.000 17.00 7.79 39.74 5.01
406 409 1.677518 GGGATACAATCACGTGGCACA 60.678 52.381 19.09 0.00 39.74 4.57
407 410 2.080693 GGATACAATCACGTGGCACAA 58.919 47.619 19.09 2.40 44.16 3.33
408 411 2.095853 GGATACAATCACGTGGCACAAG 59.904 50.000 19.09 9.22 44.16 3.16
415 418 3.416490 CGTGGCACAAGTTCCGTT 58.584 55.556 19.09 0.00 44.16 4.44
416 419 2.607457 CGTGGCACAAGTTCCGTTA 58.393 52.632 19.09 0.00 44.16 3.18
417 420 1.153353 CGTGGCACAAGTTCCGTTAT 58.847 50.000 19.09 0.00 44.16 1.89
418 421 2.339418 CGTGGCACAAGTTCCGTTATA 58.661 47.619 19.09 0.00 44.16 0.98
419 422 2.093152 CGTGGCACAAGTTCCGTTATAC 59.907 50.000 19.09 0.00 44.16 1.47
420 423 3.068560 GTGGCACAAGTTCCGTTATACA 58.931 45.455 13.86 0.00 44.16 2.29
421 424 3.687698 GTGGCACAAGTTCCGTTATACAT 59.312 43.478 13.86 0.00 44.16 2.29
422 425 3.687212 TGGCACAAGTTCCGTTATACATG 59.313 43.478 0.00 0.00 31.92 3.21
423 426 3.064820 GGCACAAGTTCCGTTATACATGG 59.935 47.826 0.00 0.00 0.00 3.66
424 427 3.486875 GCACAAGTTCCGTTATACATGGC 60.487 47.826 0.00 0.00 0.00 4.40
425 428 2.933906 ACAAGTTCCGTTATACATGGCG 59.066 45.455 0.00 0.00 0.00 5.69
426 429 2.234300 AGTTCCGTTATACATGGCGG 57.766 50.000 0.00 3.23 44.95 6.13
430 433 1.942677 CCGTTATACATGGCGGAACA 58.057 50.000 0.00 0.00 46.33 3.18
431 434 1.595794 CCGTTATACATGGCGGAACAC 59.404 52.381 0.00 0.00 46.33 3.32
432 435 2.546778 CGTTATACATGGCGGAACACT 58.453 47.619 0.00 0.00 0.00 3.55
433 436 2.284150 CGTTATACATGGCGGAACACTG 59.716 50.000 0.00 0.00 0.00 3.66
434 437 1.948104 TATACATGGCGGAACACTGC 58.052 50.000 0.00 0.00 35.42 4.40
435 438 0.035534 ATACATGGCGGAACACTGCA 60.036 50.000 0.00 0.00 37.62 4.41
436 439 0.953471 TACATGGCGGAACACTGCAC 60.953 55.000 0.00 0.00 37.62 4.57
437 440 1.968017 CATGGCGGAACACTGCACT 60.968 57.895 0.00 0.00 37.62 4.40
438 441 0.673333 CATGGCGGAACACTGCACTA 60.673 55.000 0.00 0.00 37.62 2.74
439 442 0.673644 ATGGCGGAACACTGCACTAC 60.674 55.000 0.00 0.00 37.62 2.73
440 443 1.301401 GGCGGAACACTGCACTACA 60.301 57.895 0.00 0.00 37.62 2.74
441 444 0.882927 GGCGGAACACTGCACTACAA 60.883 55.000 0.00 0.00 37.62 2.41
442 445 0.512952 GCGGAACACTGCACTACAAG 59.487 55.000 0.00 0.00 36.11 3.16
443 446 1.872237 GCGGAACACTGCACTACAAGA 60.872 52.381 0.00 0.00 36.11 3.02
444 447 1.792949 CGGAACACTGCACTACAAGAC 59.207 52.381 0.00 0.00 0.00 3.01
445 448 2.143925 GGAACACTGCACTACAAGACC 58.856 52.381 0.00 0.00 0.00 3.85
446 449 2.143925 GAACACTGCACTACAAGACCC 58.856 52.381 0.00 0.00 0.00 4.46
447 450 0.033504 ACACTGCACTACAAGACCCG 59.966 55.000 0.00 0.00 0.00 5.28
448 451 0.670546 CACTGCACTACAAGACCCGG 60.671 60.000 0.00 0.00 0.00 5.73
449 452 1.119574 ACTGCACTACAAGACCCGGT 61.120 55.000 0.00 0.00 0.00 5.28
450 453 0.670546 CTGCACTACAAGACCCGGTG 60.671 60.000 0.00 0.00 0.00 4.94
451 454 2.033194 GCACTACAAGACCCGGTGC 61.033 63.158 0.00 0.00 44.53 5.01
452 455 1.736645 CACTACAAGACCCGGTGCG 60.737 63.158 0.00 0.00 0.00 5.34
454 457 4.382320 TACAAGACCCGGTGCGGC 62.382 66.667 0.00 0.00 46.86 6.53
456 459 4.077184 CAAGACCCGGTGCGGCTA 62.077 66.667 0.00 0.00 46.86 3.93
457 460 3.081409 AAGACCCGGTGCGGCTAT 61.081 61.111 0.00 0.00 46.86 2.97
458 461 1.759299 AAGACCCGGTGCGGCTATA 60.759 57.895 0.00 0.00 46.86 1.31
459 462 1.332144 AAGACCCGGTGCGGCTATAA 61.332 55.000 0.00 0.00 46.86 0.98
460 463 1.300697 GACCCGGTGCGGCTATAAG 60.301 63.158 0.00 0.00 46.86 1.73
461 464 1.741327 GACCCGGTGCGGCTATAAGA 61.741 60.000 0.00 0.00 46.86 2.10
462 465 1.006102 CCCGGTGCGGCTATAAGAG 60.006 63.158 0.00 0.00 46.86 2.85
463 466 1.006102 CCGGTGCGGCTATAAGAGG 60.006 63.158 0.00 0.00 41.17 3.69
473 476 4.837896 GGCTATAAGAGGCCAAACAATC 57.162 45.455 5.01 0.00 46.84 2.67
474 477 4.464947 GGCTATAAGAGGCCAAACAATCT 58.535 43.478 5.01 0.00 46.84 2.40
475 478 4.276926 GGCTATAAGAGGCCAAACAATCTG 59.723 45.833 5.01 0.00 46.84 2.90
476 479 4.261363 GCTATAAGAGGCCAAACAATCTGC 60.261 45.833 5.01 0.00 0.00 4.26
477 480 1.999648 AAGAGGCCAAACAATCTGCA 58.000 45.000 5.01 0.00 0.00 4.41
478 481 1.999648 AGAGGCCAAACAATCTGCAA 58.000 45.000 5.01 0.00 0.00 4.08
479 482 1.615392 AGAGGCCAAACAATCTGCAAC 59.385 47.619 5.01 0.00 0.00 4.17
480 483 0.681175 AGGCCAAACAATCTGCAACC 59.319 50.000 5.01 0.00 0.00 3.77
481 484 0.320683 GGCCAAACAATCTGCAACCC 60.321 55.000 0.00 0.00 0.00 4.11
482 485 0.681175 GCCAAACAATCTGCAACCCT 59.319 50.000 0.00 0.00 0.00 4.34
483 486 1.892474 GCCAAACAATCTGCAACCCTA 59.108 47.619 0.00 0.00 0.00 3.53
484 487 2.497273 GCCAAACAATCTGCAACCCTAT 59.503 45.455 0.00 0.00 0.00 2.57
485 488 3.055891 GCCAAACAATCTGCAACCCTATT 60.056 43.478 0.00 0.00 0.00 1.73
486 489 4.563374 GCCAAACAATCTGCAACCCTATTT 60.563 41.667 0.00 0.00 0.00 1.40
487 490 5.550290 CCAAACAATCTGCAACCCTATTTT 58.450 37.500 0.00 0.00 0.00 1.82
488 491 5.409214 CCAAACAATCTGCAACCCTATTTTG 59.591 40.000 0.00 0.00 0.00 2.44
489 492 6.222389 CAAACAATCTGCAACCCTATTTTGA 58.778 36.000 0.00 0.00 0.00 2.69
490 493 5.391312 ACAATCTGCAACCCTATTTTGAC 57.609 39.130 0.00 0.00 0.00 3.18
491 494 5.079643 ACAATCTGCAACCCTATTTTGACT 58.920 37.500 0.00 0.00 0.00 3.41
492 495 5.539955 ACAATCTGCAACCCTATTTTGACTT 59.460 36.000 0.00 0.00 0.00 3.01
493 496 5.904362 ATCTGCAACCCTATTTTGACTTC 57.096 39.130 0.00 0.00 0.00 3.01
494 497 4.985538 TCTGCAACCCTATTTTGACTTCT 58.014 39.130 0.00 0.00 0.00 2.85
495 498 6.121776 TCTGCAACCCTATTTTGACTTCTA 57.878 37.500 0.00 0.00 0.00 2.10
496 499 6.173339 TCTGCAACCCTATTTTGACTTCTAG 58.827 40.000 0.00 0.00 0.00 2.43
497 500 5.876357 TGCAACCCTATTTTGACTTCTAGT 58.124 37.500 0.00 0.00 0.00 2.57
498 501 7.011499 TGCAACCCTATTTTGACTTCTAGTA 57.989 36.000 0.00 0.00 0.00 1.82
499 502 7.455058 TGCAACCCTATTTTGACTTCTAGTAA 58.545 34.615 0.00 0.00 0.00 2.24
500 503 8.107095 TGCAACCCTATTTTGACTTCTAGTAAT 58.893 33.333 0.00 0.00 0.00 1.89
501 504 8.957466 GCAACCCTATTTTGACTTCTAGTAATT 58.043 33.333 0.00 0.00 0.00 1.40
510 513 9.550406 TTTTGACTTCTAGTAATTTTCTTCGGA 57.450 29.630 0.00 0.00 0.00 4.55
511 514 9.550406 TTTGACTTCTAGTAATTTTCTTCGGAA 57.450 29.630 0.00 0.00 0.00 4.30
512 515 9.720769 TTGACTTCTAGTAATTTTCTTCGGAAT 57.279 29.630 0.00 0.00 33.58 3.01
513 516 9.151471 TGACTTCTAGTAATTTTCTTCGGAATG 57.849 33.333 0.00 0.00 33.58 2.67
514 517 9.367444 GACTTCTAGTAATTTTCTTCGGAATGA 57.633 33.333 0.00 0.00 33.58 2.57
515 518 9.720769 ACTTCTAGTAATTTTCTTCGGAATGAA 57.279 29.630 0.00 0.00 33.58 2.57
516 519 9.974750 CTTCTAGTAATTTTCTTCGGAATGAAC 57.025 33.333 0.00 0.00 33.58 3.18
517 520 9.720769 TTCTAGTAATTTTCTTCGGAATGAACT 57.279 29.630 0.00 0.00 33.58 3.01
518 521 9.367444 TCTAGTAATTTTCTTCGGAATGAACTC 57.633 33.333 0.00 0.00 33.58 3.01
519 522 7.379098 AGTAATTTTCTTCGGAATGAACTCC 57.621 36.000 0.00 0.00 33.58 3.85
520 523 5.644977 AATTTTCTTCGGAATGAACTCCC 57.355 39.130 0.00 0.00 33.58 4.30
521 524 4.367039 TTTTCTTCGGAATGAACTCCCT 57.633 40.909 0.00 0.00 33.58 4.20
522 525 4.367039 TTTCTTCGGAATGAACTCCCTT 57.633 40.909 0.00 0.00 33.58 3.95
523 526 4.367039 TTCTTCGGAATGAACTCCCTTT 57.633 40.909 0.00 0.00 31.87 3.11
524 527 3.939066 TCTTCGGAATGAACTCCCTTTC 58.061 45.455 0.00 0.00 31.87 2.62
525 528 2.781681 TCGGAATGAACTCCCTTTCC 57.218 50.000 0.00 0.00 37.15 3.13
526 529 2.266279 TCGGAATGAACTCCCTTTCCT 58.734 47.619 0.00 0.00 37.89 3.36
527 530 2.236395 TCGGAATGAACTCCCTTTCCTC 59.764 50.000 0.00 0.00 37.89 3.71
528 531 2.681097 CGGAATGAACTCCCTTTCCTCC 60.681 54.545 0.00 0.00 37.89 4.30
529 532 2.308866 GGAATGAACTCCCTTTCCTCCA 59.691 50.000 0.00 0.00 37.38 3.86
530 533 3.053320 GGAATGAACTCCCTTTCCTCCAT 60.053 47.826 0.00 0.00 37.38 3.41
531 534 4.166144 GGAATGAACTCCCTTTCCTCCATA 59.834 45.833 0.00 0.00 37.38 2.74
532 535 5.340027 GGAATGAACTCCCTTTCCTCCATAA 60.340 44.000 0.00 0.00 37.38 1.90
533 536 4.844349 TGAACTCCCTTTCCTCCATAAG 57.156 45.455 0.00 0.00 0.00 1.73
534 537 4.435137 TGAACTCCCTTTCCTCCATAAGA 58.565 43.478 0.00 0.00 0.00 2.10
535 538 4.471386 TGAACTCCCTTTCCTCCATAAGAG 59.529 45.833 0.00 0.00 42.83 2.85
536 539 4.354208 ACTCCCTTTCCTCCATAAGAGA 57.646 45.455 0.00 0.00 46.50 3.10
537 540 4.034410 ACTCCCTTTCCTCCATAAGAGAC 58.966 47.826 0.00 0.00 46.50 3.36
538 541 4.265078 ACTCCCTTTCCTCCATAAGAGACT 60.265 45.833 0.00 0.00 46.50 3.24
539 542 4.699994 TCCCTTTCCTCCATAAGAGACTT 58.300 43.478 0.00 0.00 46.50 3.01
540 543 4.471386 TCCCTTTCCTCCATAAGAGACTTG 59.529 45.833 0.00 0.00 46.50 3.16
541 544 4.471386 CCCTTTCCTCCATAAGAGACTTGA 59.529 45.833 0.00 0.00 46.50 3.02
542 545 5.131809 CCCTTTCCTCCATAAGAGACTTGAT 59.868 44.000 0.00 0.00 46.50 2.57
543 546 6.353429 CCCTTTCCTCCATAAGAGACTTGATT 60.353 42.308 0.00 0.00 46.50 2.57
544 547 7.115414 CCTTTCCTCCATAAGAGACTTGATTT 58.885 38.462 0.00 0.00 46.50 2.17
545 548 7.281999 CCTTTCCTCCATAAGAGACTTGATTTC 59.718 40.741 0.00 0.00 46.50 2.17
546 549 6.874278 TCCTCCATAAGAGACTTGATTTCA 57.126 37.500 0.00 0.00 46.50 2.69
547 550 6.882656 TCCTCCATAAGAGACTTGATTTCAG 58.117 40.000 0.00 0.00 46.50 3.02
548 551 5.526846 CCTCCATAAGAGACTTGATTTCAGC 59.473 44.000 0.00 0.00 46.50 4.26
549 552 6.053632 TCCATAAGAGACTTGATTTCAGCA 57.946 37.500 0.00 0.00 0.00 4.41
550 553 6.475504 TCCATAAGAGACTTGATTTCAGCAA 58.524 36.000 0.00 0.00 0.00 3.91
551 554 6.372659 TCCATAAGAGACTTGATTTCAGCAAC 59.627 38.462 0.00 0.00 0.00 4.17
552 555 6.149973 CCATAAGAGACTTGATTTCAGCAACA 59.850 38.462 0.00 0.00 0.00 3.33
553 556 7.308770 CCATAAGAGACTTGATTTCAGCAACAA 60.309 37.037 0.00 0.00 0.00 2.83
554 557 5.686159 AGAGACTTGATTTCAGCAACAAG 57.314 39.130 0.00 0.00 43.30 3.16
555 558 5.371526 AGAGACTTGATTTCAGCAACAAGA 58.628 37.500 0.00 0.00 41.16 3.02
556 559 6.002704 AGAGACTTGATTTCAGCAACAAGAT 58.997 36.000 0.00 0.00 41.16 2.40
557 560 6.010294 AGACTTGATTTCAGCAACAAGATG 57.990 37.500 0.00 0.00 41.16 2.90
558 561 5.048224 AGACTTGATTTCAGCAACAAGATGG 60.048 40.000 0.00 0.00 41.16 3.51
559 562 3.581024 TGATTTCAGCAACAAGATGGC 57.419 42.857 0.00 0.00 33.49 4.40
560 563 2.231964 TGATTTCAGCAACAAGATGGCC 59.768 45.455 0.00 0.00 33.49 5.36
561 564 1.702182 TTTCAGCAACAAGATGGCCA 58.298 45.000 8.56 8.56 33.49 5.36
562 565 1.927487 TTCAGCAACAAGATGGCCAT 58.073 45.000 20.96 20.96 33.49 4.40
563 566 2.804986 TCAGCAACAAGATGGCCATA 57.195 45.000 20.84 0.00 33.49 2.74
564 567 2.646930 TCAGCAACAAGATGGCCATAG 58.353 47.619 20.84 14.31 33.49 2.23
565 568 2.239402 TCAGCAACAAGATGGCCATAGA 59.761 45.455 20.84 2.94 33.49 1.98
566 569 2.357009 CAGCAACAAGATGGCCATAGAC 59.643 50.000 20.84 6.50 0.00 2.59
567 570 1.331756 GCAACAAGATGGCCATAGACG 59.668 52.381 20.84 10.25 0.00 4.18
568 571 1.942657 CAACAAGATGGCCATAGACGG 59.057 52.381 20.84 9.41 0.00 4.79
569 572 1.496060 ACAAGATGGCCATAGACGGA 58.504 50.000 20.84 0.00 0.00 4.69
570 573 2.050144 ACAAGATGGCCATAGACGGAT 58.950 47.619 20.84 0.00 0.00 4.18
571 574 2.037772 ACAAGATGGCCATAGACGGATC 59.962 50.000 20.84 4.09 0.00 3.36
572 575 2.301296 CAAGATGGCCATAGACGGATCT 59.699 50.000 20.84 6.84 39.15 2.75
573 576 1.898472 AGATGGCCATAGACGGATCTG 59.102 52.381 20.84 0.00 36.29 2.90
574 577 0.979665 ATGGCCATAGACGGATCTGG 59.020 55.000 19.18 0.00 36.29 3.86
575 578 0.105709 TGGCCATAGACGGATCTGGA 60.106 55.000 0.00 0.00 36.29 3.86
576 579 0.318762 GGCCATAGACGGATCTGGAC 59.681 60.000 6.47 0.00 36.29 4.02
577 580 1.040646 GCCATAGACGGATCTGGACA 58.959 55.000 6.47 0.00 36.29 4.02
578 581 1.412710 GCCATAGACGGATCTGGACAA 59.587 52.381 6.47 0.00 36.29 3.18
579 582 2.158957 GCCATAGACGGATCTGGACAAA 60.159 50.000 6.47 0.00 36.29 2.83
580 583 3.681594 GCCATAGACGGATCTGGACAAAA 60.682 47.826 6.47 0.00 36.29 2.44
581 584 4.513442 CCATAGACGGATCTGGACAAAAA 58.487 43.478 6.47 0.00 36.29 1.94
680 684 4.985413 ACACTTTGCATTTCGGATATGTG 58.015 39.130 9.63 3.33 0.00 3.21
689 693 8.310406 TGCATTTCGGATATGTGAAGTATTAG 57.690 34.615 9.63 0.00 0.00 1.73
747 751 0.110688 CGCCGATTATGACCATTGCG 60.111 55.000 0.00 0.00 34.52 4.85
809 814 3.319137 TGAGTAGCTCCATGACAACAC 57.681 47.619 0.00 0.00 0.00 3.32
914 919 5.717119 ACGTACAAACTAGGTACCATGAAG 58.283 41.667 15.94 8.26 38.26 3.02
916 921 6.154021 ACGTACAAACTAGGTACCATGAAGAT 59.846 38.462 15.94 0.00 38.26 2.40
917 922 6.475727 CGTACAAACTAGGTACCATGAAGATG 59.524 42.308 15.94 11.86 38.26 2.90
969 978 5.478233 TTATGTGCCGTACTAATGCTTTG 57.522 39.130 0.00 0.00 0.00 2.77
1173 1188 0.184692 TTCAGCACCACCACCATCAA 59.815 50.000 0.00 0.00 0.00 2.57
1224 1242 1.213537 CATTTGCCGCCTCAACAGG 59.786 57.895 0.00 0.00 43.82 4.00
1251 1269 5.508567 TCCAATGATCAAAAGATACTGCCA 58.491 37.500 0.00 0.00 0.00 4.92
1543 1590 0.976641 TGTCCTCACAGTGGGATCAC 59.023 55.000 0.33 0.00 43.93 3.06
1743 1817 4.671831 TGGGTGATATGGTGTCATTGTTT 58.328 39.130 0.00 0.00 34.96 2.83
1751 1825 4.764679 TGGTGTCATTGTTTGATACTGC 57.235 40.909 3.13 0.00 43.77 4.40
1926 2000 1.898863 ATGTCCCTAGGATGGCTGTT 58.101 50.000 11.48 0.00 32.73 3.16
1996 2074 6.346758 GCATTGTAACATTGATGGTGTGTTTG 60.347 38.462 0.00 0.00 37.30 2.93
2000 2078 4.503741 ACATTGATGGTGTGTTTGTAGC 57.496 40.909 0.00 0.00 0.00 3.58
2281 2379 4.275936 ACATGTTGTTTGTCTGAAGTAGCC 59.724 41.667 0.00 0.00 0.00 3.93
2300 2398 7.215789 AGTAGCCACTTCTTCTATCATCATTG 58.784 38.462 0.00 0.00 0.00 2.82
2302 2400 4.577693 GCCACTTCTTCTATCATCATTGCA 59.422 41.667 0.00 0.00 0.00 4.08
2327 2429 3.459232 TGTTATGCTATCTTGAGCGCT 57.541 42.857 11.27 11.27 45.99 5.92
2361 2463 9.485206 TGTTCTAACTTCTAAACAATGGAGTAC 57.515 33.333 0.00 0.00 0.00 2.73
2393 2497 2.016905 ACTGCTGTACTGTTCTCCCT 57.983 50.000 0.00 0.00 0.00 4.20
2547 2735 3.871006 CGCACACTTTGATCCTATTGCTA 59.129 43.478 0.00 0.00 0.00 3.49
2548 2736 4.260375 CGCACACTTTGATCCTATTGCTAC 60.260 45.833 0.00 0.00 0.00 3.58
2551 2739 4.878397 ACACTTTGATCCTATTGCTACTGC 59.122 41.667 0.00 0.00 40.20 4.40
2552 2740 5.121811 CACTTTGATCCTATTGCTACTGCT 58.878 41.667 0.00 0.00 40.48 4.24
2553 2741 5.236047 CACTTTGATCCTATTGCTACTGCTC 59.764 44.000 0.00 0.00 40.48 4.26
2554 2742 5.130145 ACTTTGATCCTATTGCTACTGCTCT 59.870 40.000 0.00 0.00 40.48 4.09
2567 2772 3.498774 ACTGCTCTTTGTGTGGAGATT 57.501 42.857 0.00 0.00 32.96 2.40
2608 2813 0.963962 AAGCTGGCTGTGATTTGGTG 59.036 50.000 0.00 0.00 0.00 4.17
2612 2817 1.955778 CTGGCTGTGATTTGGTGTTCA 59.044 47.619 0.00 0.00 0.00 3.18
2638 2843 4.486125 AGTTTTGGCCATTGTTGAAGTT 57.514 36.364 6.09 0.00 0.00 2.66
2656 2871 1.670295 GTTTTTGGCAAGGCTGTTTGG 59.330 47.619 0.00 0.00 0.00 3.28
2663 2878 3.287222 GGCAAGGCTGTTTGGTGATATA 58.713 45.455 0.00 0.00 0.00 0.86
2718 2933 1.734465 CTTCTGTGTCCAAGATTCGGC 59.266 52.381 0.00 0.00 0.00 5.54
2719 2934 0.389817 TCTGTGTCCAAGATTCGGCG 60.390 55.000 0.00 0.00 0.00 6.46
2721 2936 0.250124 TGTGTCCAAGATTCGGCGTT 60.250 50.000 6.85 0.00 0.00 4.84
2733 2948 4.508124 AGATTCGGCGTTATCTTGATCAAC 59.492 41.667 17.19 0.00 0.00 3.18
2743 2958 6.963242 CGTTATCTTGATCAACATGTTGGAAG 59.037 38.462 32.54 28.03 40.78 3.46
2762 2977 1.299850 GCTGGTGTTTGCCCGTTTC 60.300 57.895 0.00 0.00 0.00 2.78
2763 2978 1.362355 CTGGTGTTTGCCCGTTTCC 59.638 57.895 0.00 0.00 0.00 3.13
2779 2999 3.564225 CGTTTCCTTTTCTGTAAGGCTGT 59.436 43.478 0.00 0.00 43.62 4.40
2804 3024 0.874390 TGATGTCTCTTGCGTTTGCC 59.126 50.000 0.00 0.00 41.78 4.52
2825 3045 4.389382 GCCTTTTTGTTTGTGTTTAACCGT 59.611 37.500 0.00 0.00 0.00 4.83
2859 3079 1.134491 ACTCGGCACTGTTATTAGGCC 60.134 52.381 0.00 0.00 41.20 5.19
2875 3095 1.208614 GCCGTGCTCAAAGCTGAAG 59.791 57.895 0.11 0.00 42.97 3.02
2877 3097 1.208614 CGTGCTCAAAGCTGAAGCC 59.791 57.895 11.46 4.15 42.97 4.35
2883 3103 1.334869 CTCAAAGCTGAAGCCGTTGTT 59.665 47.619 13.20 0.00 43.38 2.83
2884 3104 1.333619 TCAAAGCTGAAGCCGTTGTTC 59.666 47.619 13.20 0.00 43.38 3.18
2885 3105 1.065401 CAAAGCTGAAGCCGTTGTTCA 59.935 47.619 0.00 0.00 43.38 3.18
2886 3106 1.609208 AAGCTGAAGCCGTTGTTCAT 58.391 45.000 0.00 0.00 43.38 2.57
2890 3110 2.653890 CTGAAGCCGTTGTTCATTGTG 58.346 47.619 0.00 0.00 33.49 3.33
2900 3153 6.472808 GCCGTTGTTCATTGTGTTTTACTTTA 59.527 34.615 0.00 0.00 0.00 1.85
2927 3180 2.461695 GGACTTCAGGATGTCCTCTCA 58.538 52.381 20.98 0.00 46.65 3.27
2928 3181 3.037549 GGACTTCAGGATGTCCTCTCAT 58.962 50.000 20.98 0.00 46.65 2.90
2929 3182 3.181467 GGACTTCAGGATGTCCTCTCATG 60.181 52.174 20.98 0.00 46.65 3.07
2930 3183 2.770802 ACTTCAGGATGTCCTCTCATGG 59.229 50.000 0.00 0.00 46.65 3.66
2931 3184 2.854736 TCAGGATGTCCTCTCATGGA 57.145 50.000 0.00 0.00 46.65 3.41
2939 3192 2.940514 TCCTCTCATGGACCAGGTAA 57.059 50.000 5.96 0.00 0.00 2.85
2940 3193 3.199442 TCCTCTCATGGACCAGGTAAA 57.801 47.619 5.96 0.00 0.00 2.01
2941 3194 3.736094 TCCTCTCATGGACCAGGTAAAT 58.264 45.455 5.96 0.00 0.00 1.40
2942 3195 3.455910 TCCTCTCATGGACCAGGTAAATG 59.544 47.826 5.96 7.44 0.00 2.32
2943 3196 3.200825 CCTCTCATGGACCAGGTAAATGT 59.799 47.826 5.96 0.00 0.00 2.71
2957 3210 7.047891 CCAGGTAAATGTGCTAATTCTCAGTA 58.952 38.462 0.00 0.00 0.00 2.74
2960 3213 7.766278 AGGTAAATGTGCTAATTCTCAGTACAG 59.234 37.037 0.00 0.00 41.07 2.74
2974 3227 0.453390 GTACAGCTTTGCCTGGATGC 59.547 55.000 0.00 0.00 37.16 3.91
3021 3274 3.569701 ACTGTTTGACCATGATGTTCCAC 59.430 43.478 0.00 0.00 0.00 4.02
3029 3282 7.194112 TGACCATGATGTTCCACTATCTAAA 57.806 36.000 0.00 0.00 0.00 1.85
3066 3319 4.981806 TGGCCGATTTATTTTCTTCTGG 57.018 40.909 0.00 0.00 0.00 3.86
3090 3343 3.387012 TCATGTCAGATCAGATGGGGAA 58.613 45.455 0.00 0.00 0.00 3.97
3091 3344 3.390311 TCATGTCAGATCAGATGGGGAAG 59.610 47.826 0.00 0.00 0.00 3.46
3092 3345 3.120468 TGTCAGATCAGATGGGGAAGA 57.880 47.619 0.00 0.00 0.00 2.87
3093 3346 3.453868 TGTCAGATCAGATGGGGAAGAA 58.546 45.455 0.00 0.00 0.00 2.52
3094 3347 3.198635 TGTCAGATCAGATGGGGAAGAAC 59.801 47.826 0.00 0.00 0.00 3.01
3095 3348 3.198635 GTCAGATCAGATGGGGAAGAACA 59.801 47.826 0.00 0.00 0.00 3.18
3096 3349 3.845992 TCAGATCAGATGGGGAAGAACAA 59.154 43.478 0.00 0.00 0.00 2.83
3097 3350 3.944015 CAGATCAGATGGGGAAGAACAAC 59.056 47.826 0.00 0.00 0.00 3.32
3098 3351 3.848975 AGATCAGATGGGGAAGAACAACT 59.151 43.478 0.00 0.00 0.00 3.16
3099 3352 5.032846 AGATCAGATGGGGAAGAACAACTA 58.967 41.667 0.00 0.00 0.00 2.24
3100 3353 4.826274 TCAGATGGGGAAGAACAACTAG 57.174 45.455 0.00 0.00 0.00 2.57
3101 3354 3.055094 TCAGATGGGGAAGAACAACTAGC 60.055 47.826 0.00 0.00 0.00 3.42
3102 3355 2.912956 AGATGGGGAAGAACAACTAGCA 59.087 45.455 0.00 0.00 0.00 3.49
3103 3356 2.859165 TGGGGAAGAACAACTAGCAG 57.141 50.000 0.00 0.00 0.00 4.24
3104 3357 2.334977 TGGGGAAGAACAACTAGCAGA 58.665 47.619 0.00 0.00 0.00 4.26
3105 3358 2.912956 TGGGGAAGAACAACTAGCAGAT 59.087 45.455 0.00 0.00 0.00 2.90
3106 3359 3.055094 TGGGGAAGAACAACTAGCAGATC 60.055 47.826 0.00 0.00 0.00 2.75
3107 3360 3.190874 GGGAAGAACAACTAGCAGATCG 58.809 50.000 0.00 0.00 0.00 3.69
3108 3361 3.368531 GGGAAGAACAACTAGCAGATCGT 60.369 47.826 0.00 0.00 0.00 3.73
3109 3362 3.860536 GGAAGAACAACTAGCAGATCGTC 59.139 47.826 0.00 0.00 0.00 4.20
3110 3363 3.138205 AGAACAACTAGCAGATCGTCG 57.862 47.619 0.00 0.00 0.00 5.12
3111 3364 2.488545 AGAACAACTAGCAGATCGTCGT 59.511 45.455 0.00 0.00 0.00 4.34
3112 3365 3.688185 AGAACAACTAGCAGATCGTCGTA 59.312 43.478 0.00 0.00 0.00 3.43
3113 3366 4.155462 AGAACAACTAGCAGATCGTCGTAA 59.845 41.667 0.00 0.00 0.00 3.18
3114 3367 3.756069 ACAACTAGCAGATCGTCGTAAC 58.244 45.455 0.00 0.00 0.00 2.50
3124 3377 1.154727 CGTCGTAACGCTTGGTTGC 60.155 57.895 0.00 0.00 42.82 4.17
3125 3378 1.205820 GTCGTAACGCTTGGTTGCC 59.794 57.895 0.00 0.00 39.75 4.52
3126 3379 1.227586 TCGTAACGCTTGGTTGCCA 60.228 52.632 0.00 0.00 39.75 4.92
3127 3380 0.604243 TCGTAACGCTTGGTTGCCAT 60.604 50.000 0.00 0.00 39.75 4.40
3128 3381 1.080298 CGTAACGCTTGGTTGCCATA 58.920 50.000 0.00 0.00 39.75 2.74
3129 3382 1.465387 CGTAACGCTTGGTTGCCATAA 59.535 47.619 0.00 0.00 39.75 1.90
3130 3383 2.096819 CGTAACGCTTGGTTGCCATAAT 59.903 45.455 0.00 0.00 39.75 1.28
3131 3384 3.310227 CGTAACGCTTGGTTGCCATAATA 59.690 43.478 0.00 0.00 39.75 0.98
3132 3385 4.201832 CGTAACGCTTGGTTGCCATAATAA 60.202 41.667 0.00 0.00 39.75 1.40
3133 3386 3.775661 ACGCTTGGTTGCCATAATAAC 57.224 42.857 0.00 0.00 31.53 1.89
3134 3387 3.352648 ACGCTTGGTTGCCATAATAACT 58.647 40.909 0.00 0.00 31.53 2.24
3135 3388 3.128589 ACGCTTGGTTGCCATAATAACTG 59.871 43.478 0.00 0.00 31.53 3.16
3136 3389 3.447742 GCTTGGTTGCCATAATAACTGC 58.552 45.455 0.00 0.00 31.53 4.40
3137 3390 3.737972 GCTTGGTTGCCATAATAACTGCC 60.738 47.826 0.00 0.00 31.53 4.85
3138 3391 2.383855 TGGTTGCCATAATAACTGCCC 58.616 47.619 0.00 0.00 0.00 5.36
3139 3392 2.291865 TGGTTGCCATAATAACTGCCCA 60.292 45.455 0.00 0.00 0.00 5.36
3140 3393 2.965147 GGTTGCCATAATAACTGCCCAT 59.035 45.455 0.00 0.00 0.00 4.00
3141 3394 4.148838 GGTTGCCATAATAACTGCCCATA 58.851 43.478 0.00 0.00 0.00 2.74
3142 3395 4.772100 GGTTGCCATAATAACTGCCCATAT 59.228 41.667 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.096281 GACAGACAGAGACGAGAGCG 59.904 60.000 0.00 0.00 44.79 5.03
41 42 9.405587 GATCTATCGACTTAAAAGGAGAGAATG 57.594 37.037 0.00 0.00 31.40 2.67
73 74 1.068954 GGCAAGAAAGAAGTGCTTCGG 60.069 52.381 6.32 0.00 43.97 4.30
76 77 1.332195 GGGGCAAGAAAGAAGTGCTT 58.668 50.000 0.00 0.00 38.36 3.91
80 81 2.899900 GGATTTGGGGCAAGAAAGAAGT 59.100 45.455 0.00 0.00 0.00 3.01
103 104 1.813513 AAAACAGATCAGACGGGCTG 58.186 50.000 3.89 3.89 46.31 4.85
104 105 2.568623 AAAAACAGATCAGACGGGCT 57.431 45.000 0.00 0.00 0.00 5.19
140 141 5.067283 TGGAGAAACGAGATATCATTCGACA 59.933 40.000 18.17 11.26 39.93 4.35
145 146 5.129485 AGTGGTGGAGAAACGAGATATCATT 59.871 40.000 5.32 0.00 0.00 2.57
152 153 0.966920 GGAGTGGTGGAGAAACGAGA 59.033 55.000 0.00 0.00 0.00 4.04
156 157 3.983044 ATGTAGGAGTGGTGGAGAAAC 57.017 47.619 0.00 0.00 0.00 2.78
159 160 3.516586 TCAAATGTAGGAGTGGTGGAGA 58.483 45.455 0.00 0.00 0.00 3.71
202 204 0.865769 GCAGTTTCGTCCGTGTTCAT 59.134 50.000 0.00 0.00 0.00 2.57
214 216 3.809832 TGAACTCAAGCTACAGCAGTTTC 59.190 43.478 3.70 4.59 45.16 2.78
219 221 5.405935 TCTAATGAACTCAAGCTACAGCA 57.594 39.130 3.70 0.00 45.16 4.41
220 222 6.713520 CATTCTAATGAACTCAAGCTACAGC 58.286 40.000 0.00 0.00 38.70 4.40
221 223 6.538021 AGCATTCTAATGAACTCAAGCTACAG 59.462 38.462 6.87 0.00 38.70 2.74
222 224 6.409704 AGCATTCTAATGAACTCAAGCTACA 58.590 36.000 6.87 0.00 38.70 2.74
223 225 6.018343 GGAGCATTCTAATGAACTCAAGCTAC 60.018 42.308 6.87 0.00 38.70 3.58
224 226 6.051717 GGAGCATTCTAATGAACTCAAGCTA 58.948 40.000 6.87 0.00 38.70 3.32
225 227 4.880696 GGAGCATTCTAATGAACTCAAGCT 59.119 41.667 6.87 0.00 38.70 3.74
226 228 4.880696 AGGAGCATTCTAATGAACTCAAGC 59.119 41.667 6.87 0.00 38.70 4.01
227 229 6.998968 AAGGAGCATTCTAATGAACTCAAG 57.001 37.500 6.87 0.00 38.70 3.02
228 230 7.765695 AAAAGGAGCATTCTAATGAACTCAA 57.234 32.000 6.87 0.00 38.70 3.02
229 231 7.765695 AAAAAGGAGCATTCTAATGAACTCA 57.234 32.000 6.87 0.00 38.70 3.41
230 232 9.167311 TCTAAAAAGGAGCATTCTAATGAACTC 57.833 33.333 6.87 4.72 38.70 3.01
231 233 9.692325 ATCTAAAAAGGAGCATTCTAATGAACT 57.308 29.630 6.87 0.00 38.70 3.01
286 289 7.598278 AGCATCTACACGGATCTAAAATCTAG 58.402 38.462 0.00 0.00 0.00 2.43
289 292 7.145985 TGTAGCATCTACACGGATCTAAAATC 58.854 38.462 2.81 0.00 0.00 2.17
361 364 8.960591 CCTATGTTCATGGAATAAAACTCACTT 58.039 33.333 0.00 0.00 0.00 3.16
362 365 7.557719 CCCTATGTTCATGGAATAAAACTCACT 59.442 37.037 0.00 0.00 0.00 3.41
363 366 7.556275 TCCCTATGTTCATGGAATAAAACTCAC 59.444 37.037 0.00 0.00 0.00 3.51
364 367 7.638444 TCCCTATGTTCATGGAATAAAACTCA 58.362 34.615 0.00 0.00 0.00 3.41
365 368 8.697507 ATCCCTATGTTCATGGAATAAAACTC 57.302 34.615 0.00 0.00 0.00 3.01
366 369 9.574516 GTATCCCTATGTTCATGGAATAAAACT 57.425 33.333 0.00 0.00 0.00 2.66
367 370 9.349713 TGTATCCCTATGTTCATGGAATAAAAC 57.650 33.333 0.00 0.00 0.00 2.43
368 371 9.928618 TTGTATCCCTATGTTCATGGAATAAAA 57.071 29.630 0.00 0.00 0.00 1.52
370 373 9.739276 GATTGTATCCCTATGTTCATGGAATAA 57.261 33.333 0.00 0.00 0.00 1.40
371 374 8.889445 TGATTGTATCCCTATGTTCATGGAATA 58.111 33.333 0.00 0.00 0.00 1.75
372 375 7.667219 GTGATTGTATCCCTATGTTCATGGAAT 59.333 37.037 0.00 0.00 0.00 3.01
373 376 6.998074 GTGATTGTATCCCTATGTTCATGGAA 59.002 38.462 0.00 0.00 0.00 3.53
374 377 6.533730 GTGATTGTATCCCTATGTTCATGGA 58.466 40.000 0.00 0.00 0.00 3.41
375 378 5.409520 CGTGATTGTATCCCTATGTTCATGG 59.590 44.000 0.00 0.00 0.00 3.66
376 379 5.991606 ACGTGATTGTATCCCTATGTTCATG 59.008 40.000 0.00 0.00 0.00 3.07
377 380 5.991606 CACGTGATTGTATCCCTATGTTCAT 59.008 40.000 10.90 0.00 0.00 2.57
378 381 5.356426 CACGTGATTGTATCCCTATGTTCA 58.644 41.667 10.90 0.00 0.00 3.18
379 382 4.750098 CCACGTGATTGTATCCCTATGTTC 59.250 45.833 19.30 0.00 0.00 3.18
380 383 4.703897 CCACGTGATTGTATCCCTATGTT 58.296 43.478 19.30 0.00 0.00 2.71
381 384 3.494398 GCCACGTGATTGTATCCCTATGT 60.494 47.826 19.30 0.00 0.00 2.29
382 385 3.067106 GCCACGTGATTGTATCCCTATG 58.933 50.000 19.30 0.00 0.00 2.23
383 386 2.703536 TGCCACGTGATTGTATCCCTAT 59.296 45.455 19.30 0.00 0.00 2.57
384 387 2.112190 TGCCACGTGATTGTATCCCTA 58.888 47.619 19.30 0.00 0.00 3.53
385 388 0.908910 TGCCACGTGATTGTATCCCT 59.091 50.000 19.30 0.00 0.00 4.20
386 389 1.014352 GTGCCACGTGATTGTATCCC 58.986 55.000 19.30 0.00 0.00 3.85
387 390 1.732941 TGTGCCACGTGATTGTATCC 58.267 50.000 19.30 0.00 0.00 2.59
388 391 2.742053 ACTTGTGCCACGTGATTGTATC 59.258 45.455 19.30 0.81 0.00 2.24
389 392 2.778299 ACTTGTGCCACGTGATTGTAT 58.222 42.857 19.30 0.00 0.00 2.29
390 393 2.248280 ACTTGTGCCACGTGATTGTA 57.752 45.000 19.30 0.00 0.00 2.41
391 394 1.333619 GAACTTGTGCCACGTGATTGT 59.666 47.619 19.30 4.05 0.00 2.71
392 395 1.334960 GGAACTTGTGCCACGTGATTG 60.335 52.381 19.30 0.72 0.00 2.67
393 396 0.951558 GGAACTTGTGCCACGTGATT 59.048 50.000 19.30 0.00 0.00 2.57
394 397 1.227999 CGGAACTTGTGCCACGTGAT 61.228 55.000 19.30 0.00 0.00 3.06
395 398 1.885388 CGGAACTTGTGCCACGTGA 60.885 57.895 19.30 0.00 0.00 4.35
396 399 1.711060 AACGGAACTTGTGCCACGTG 61.711 55.000 9.08 9.08 34.54 4.49
397 400 0.179078 TAACGGAACTTGTGCCACGT 60.179 50.000 0.00 0.00 35.95 4.49
398 401 1.153353 ATAACGGAACTTGTGCCACG 58.847 50.000 0.00 0.00 0.00 4.94
399 402 3.068560 TGTATAACGGAACTTGTGCCAC 58.931 45.455 0.00 0.00 0.00 5.01
400 403 3.404224 TGTATAACGGAACTTGTGCCA 57.596 42.857 0.00 0.00 0.00 4.92
401 404 3.064820 CCATGTATAACGGAACTTGTGCC 59.935 47.826 0.00 0.00 0.00 5.01
402 405 3.486875 GCCATGTATAACGGAACTTGTGC 60.487 47.826 0.00 0.00 0.00 4.57
403 406 3.242284 CGCCATGTATAACGGAACTTGTG 60.242 47.826 0.00 0.00 0.00 3.33
404 407 2.933906 CGCCATGTATAACGGAACTTGT 59.066 45.455 0.00 0.00 0.00 3.16
405 408 3.585748 CGCCATGTATAACGGAACTTG 57.414 47.619 0.00 0.00 0.00 3.16
411 414 1.595794 GTGTTCCGCCATGTATAACGG 59.404 52.381 0.00 0.00 46.97 4.44
412 415 2.284150 CAGTGTTCCGCCATGTATAACG 59.716 50.000 0.00 0.00 0.00 3.18
413 416 2.031683 GCAGTGTTCCGCCATGTATAAC 59.968 50.000 0.00 0.00 0.00 1.89
414 417 2.285083 GCAGTGTTCCGCCATGTATAA 58.715 47.619 0.00 0.00 0.00 0.98
415 418 1.208293 TGCAGTGTTCCGCCATGTATA 59.792 47.619 0.00 0.00 0.00 1.47
416 419 0.035534 TGCAGTGTTCCGCCATGTAT 60.036 50.000 0.00 0.00 0.00 2.29
417 420 0.953471 GTGCAGTGTTCCGCCATGTA 60.953 55.000 0.00 0.00 0.00 2.29
418 421 2.112928 TGCAGTGTTCCGCCATGT 59.887 55.556 0.00 0.00 0.00 3.21
419 422 0.673333 TAGTGCAGTGTTCCGCCATG 60.673 55.000 3.69 0.00 0.00 3.66
420 423 0.673644 GTAGTGCAGTGTTCCGCCAT 60.674 55.000 3.69 0.00 0.00 4.40
421 424 1.301401 GTAGTGCAGTGTTCCGCCA 60.301 57.895 3.69 0.00 0.00 5.69
422 425 0.882927 TTGTAGTGCAGTGTTCCGCC 60.883 55.000 3.69 0.00 0.00 6.13
423 426 0.512952 CTTGTAGTGCAGTGTTCCGC 59.487 55.000 3.69 0.00 0.00 5.54
424 427 1.792949 GTCTTGTAGTGCAGTGTTCCG 59.207 52.381 3.69 0.00 0.00 4.30
425 428 2.143925 GGTCTTGTAGTGCAGTGTTCC 58.856 52.381 3.69 0.00 0.00 3.62
426 429 2.143925 GGGTCTTGTAGTGCAGTGTTC 58.856 52.381 3.69 0.00 0.00 3.18
427 430 1.540363 CGGGTCTTGTAGTGCAGTGTT 60.540 52.381 3.69 0.00 0.00 3.32
428 431 0.033504 CGGGTCTTGTAGTGCAGTGT 59.966 55.000 3.69 0.00 0.00 3.55
429 432 0.670546 CCGGGTCTTGTAGTGCAGTG 60.671 60.000 3.69 0.00 0.00 3.66
430 433 1.119574 ACCGGGTCTTGTAGTGCAGT 61.120 55.000 6.32 0.00 0.00 4.40
431 434 0.670546 CACCGGGTCTTGTAGTGCAG 60.671 60.000 6.32 0.00 0.00 4.41
432 435 1.369692 CACCGGGTCTTGTAGTGCA 59.630 57.895 6.32 0.00 0.00 4.57
433 436 2.033194 GCACCGGGTCTTGTAGTGC 61.033 63.158 6.32 0.00 45.99 4.40
434 437 1.736645 CGCACCGGGTCTTGTAGTG 60.737 63.158 6.32 0.00 0.00 2.74
435 438 2.654877 CGCACCGGGTCTTGTAGT 59.345 61.111 6.32 0.00 0.00 2.73
436 439 2.125673 CCGCACCGGGTCTTGTAG 60.126 66.667 6.32 0.00 44.15 2.74
446 449 1.664965 GCCTCTTATAGCCGCACCG 60.665 63.158 0.00 0.00 0.00 4.94
447 450 1.301795 GGCCTCTTATAGCCGCACC 60.302 63.158 0.00 0.00 39.87 5.01
448 451 4.363034 GGCCTCTTATAGCCGCAC 57.637 61.111 0.00 0.00 39.87 5.34
453 456 4.261363 GCAGATTGTTTGGCCTCTTATAGC 60.261 45.833 3.32 0.00 0.00 2.97
454 457 4.883585 TGCAGATTGTTTGGCCTCTTATAG 59.116 41.667 3.32 0.00 0.00 1.31
455 458 4.854173 TGCAGATTGTTTGGCCTCTTATA 58.146 39.130 3.32 0.00 0.00 0.98
456 459 3.700538 TGCAGATTGTTTGGCCTCTTAT 58.299 40.909 3.32 0.00 0.00 1.73
457 460 3.153369 TGCAGATTGTTTGGCCTCTTA 57.847 42.857 3.32 0.00 0.00 2.10
458 461 1.999648 TGCAGATTGTTTGGCCTCTT 58.000 45.000 3.32 0.00 0.00 2.85
459 462 1.615392 GTTGCAGATTGTTTGGCCTCT 59.385 47.619 3.32 0.00 0.00 3.69
460 463 1.337167 GGTTGCAGATTGTTTGGCCTC 60.337 52.381 3.32 0.00 0.00 4.70
461 464 0.681175 GGTTGCAGATTGTTTGGCCT 59.319 50.000 3.32 0.00 0.00 5.19
462 465 0.320683 GGGTTGCAGATTGTTTGGCC 60.321 55.000 0.00 0.00 0.00 5.36
463 466 0.681175 AGGGTTGCAGATTGTTTGGC 59.319 50.000 0.00 0.00 0.00 4.52
464 467 4.806640 AATAGGGTTGCAGATTGTTTGG 57.193 40.909 0.00 0.00 0.00 3.28
465 468 6.146021 GTCAAAATAGGGTTGCAGATTGTTTG 59.854 38.462 0.00 0.00 0.00 2.93
466 469 6.041979 AGTCAAAATAGGGTTGCAGATTGTTT 59.958 34.615 0.00 0.00 0.00 2.83
467 470 5.539955 AGTCAAAATAGGGTTGCAGATTGTT 59.460 36.000 0.00 0.00 0.00 2.83
468 471 5.079643 AGTCAAAATAGGGTTGCAGATTGT 58.920 37.500 0.00 0.00 0.00 2.71
469 472 5.649782 AGTCAAAATAGGGTTGCAGATTG 57.350 39.130 0.00 0.00 0.00 2.67
470 473 6.012745 AGAAGTCAAAATAGGGTTGCAGATT 58.987 36.000 0.00 0.00 0.00 2.40
471 474 5.574188 AGAAGTCAAAATAGGGTTGCAGAT 58.426 37.500 0.00 0.00 0.00 2.90
472 475 4.985538 AGAAGTCAAAATAGGGTTGCAGA 58.014 39.130 0.00 0.00 0.00 4.26
473 476 5.940470 ACTAGAAGTCAAAATAGGGTTGCAG 59.060 40.000 0.00 0.00 0.00 4.41
474 477 5.876357 ACTAGAAGTCAAAATAGGGTTGCA 58.124 37.500 0.00 0.00 0.00 4.08
475 478 7.916914 TTACTAGAAGTCAAAATAGGGTTGC 57.083 36.000 0.00 0.00 0.00 4.17
484 487 9.550406 TCCGAAGAAAATTACTAGAAGTCAAAA 57.450 29.630 0.00 0.00 0.00 2.44
485 488 9.550406 TTCCGAAGAAAATTACTAGAAGTCAAA 57.450 29.630 0.00 0.00 0.00 2.69
486 489 9.720769 ATTCCGAAGAAAATTACTAGAAGTCAA 57.279 29.630 0.00 0.00 35.09 3.18
487 490 9.151471 CATTCCGAAGAAAATTACTAGAAGTCA 57.849 33.333 0.00 0.00 35.09 3.41
488 491 9.367444 TCATTCCGAAGAAAATTACTAGAAGTC 57.633 33.333 0.00 0.00 35.09 3.01
489 492 9.720769 TTCATTCCGAAGAAAATTACTAGAAGT 57.279 29.630 0.00 0.00 35.09 3.01
490 493 9.974750 GTTCATTCCGAAGAAAATTACTAGAAG 57.025 33.333 0.00 0.00 35.09 2.85
491 494 9.720769 AGTTCATTCCGAAGAAAATTACTAGAA 57.279 29.630 0.00 0.00 35.09 2.10
492 495 9.367444 GAGTTCATTCCGAAGAAAATTACTAGA 57.633 33.333 0.00 0.00 35.09 2.43
493 496 8.604890 GGAGTTCATTCCGAAGAAAATTACTAG 58.395 37.037 0.00 0.00 35.09 2.57
494 497 7.551617 GGGAGTTCATTCCGAAGAAAATTACTA 59.448 37.037 0.00 0.00 38.17 1.82
495 498 6.374613 GGGAGTTCATTCCGAAGAAAATTACT 59.625 38.462 0.00 0.00 38.17 2.24
496 499 6.374613 AGGGAGTTCATTCCGAAGAAAATTAC 59.625 38.462 0.00 0.00 38.17 1.89
497 500 6.481643 AGGGAGTTCATTCCGAAGAAAATTA 58.518 36.000 0.00 0.00 38.17 1.40
498 501 5.325239 AGGGAGTTCATTCCGAAGAAAATT 58.675 37.500 0.00 0.00 38.17 1.82
499 502 4.923415 AGGGAGTTCATTCCGAAGAAAAT 58.077 39.130 0.00 0.00 38.17 1.82
500 503 4.367039 AGGGAGTTCATTCCGAAGAAAA 57.633 40.909 0.00 0.00 38.17 2.29
501 504 4.367039 AAGGGAGTTCATTCCGAAGAAA 57.633 40.909 0.00 0.00 38.17 2.52
502 505 4.324267 GAAAGGGAGTTCATTCCGAAGAA 58.676 43.478 0.00 0.00 38.17 2.52
503 506 3.307480 GGAAAGGGAGTTCATTCCGAAGA 60.307 47.826 0.00 0.00 38.17 2.87
504 507 3.010420 GGAAAGGGAGTTCATTCCGAAG 58.990 50.000 0.00 0.00 38.17 3.79
505 508 2.642807 AGGAAAGGGAGTTCATTCCGAA 59.357 45.455 0.00 0.00 44.78 4.30
506 509 2.236395 GAGGAAAGGGAGTTCATTCCGA 59.764 50.000 0.00 0.00 44.78 4.55
507 510 2.633488 GAGGAAAGGGAGTTCATTCCG 58.367 52.381 0.00 0.00 44.78 4.30
508 511 2.308866 TGGAGGAAAGGGAGTTCATTCC 59.691 50.000 0.00 0.00 41.32 3.01
509 512 3.721087 TGGAGGAAAGGGAGTTCATTC 57.279 47.619 0.00 0.00 0.00 2.67
510 513 5.492524 TCTTATGGAGGAAAGGGAGTTCATT 59.507 40.000 0.00 0.00 0.00 2.57
511 514 5.039645 TCTTATGGAGGAAAGGGAGTTCAT 58.960 41.667 0.00 0.00 0.00 2.57
512 515 4.435137 TCTTATGGAGGAAAGGGAGTTCA 58.565 43.478 0.00 0.00 0.00 3.18
513 516 4.717280 TCTCTTATGGAGGAAAGGGAGTTC 59.283 45.833 0.00 0.00 42.10 3.01
514 517 4.471747 GTCTCTTATGGAGGAAAGGGAGTT 59.528 45.833 0.00 0.00 42.10 3.01
515 518 4.034410 GTCTCTTATGGAGGAAAGGGAGT 58.966 47.826 0.00 0.00 42.10 3.85
516 519 4.294347 AGTCTCTTATGGAGGAAAGGGAG 58.706 47.826 0.00 0.00 42.10 4.30
517 520 4.354208 AGTCTCTTATGGAGGAAAGGGA 57.646 45.455 0.00 0.00 42.10 4.20
518 521 4.471386 TCAAGTCTCTTATGGAGGAAAGGG 59.529 45.833 0.00 0.00 42.10 3.95
519 522 5.683876 TCAAGTCTCTTATGGAGGAAAGG 57.316 43.478 0.00 0.00 42.10 3.11
520 523 7.826252 TGAAATCAAGTCTCTTATGGAGGAAAG 59.174 37.037 0.00 0.00 42.10 2.62
521 524 7.689299 TGAAATCAAGTCTCTTATGGAGGAAA 58.311 34.615 0.00 0.00 42.10 3.13
522 525 7.257790 TGAAATCAAGTCTCTTATGGAGGAA 57.742 36.000 0.00 0.00 42.10 3.36
523 526 6.631314 GCTGAAATCAAGTCTCTTATGGAGGA 60.631 42.308 0.00 0.00 42.10 3.71
524 527 5.526846 GCTGAAATCAAGTCTCTTATGGAGG 59.473 44.000 0.00 0.00 42.10 4.30
525 528 6.111382 TGCTGAAATCAAGTCTCTTATGGAG 58.889 40.000 0.00 0.00 43.12 3.86
526 529 6.053632 TGCTGAAATCAAGTCTCTTATGGA 57.946 37.500 0.00 0.00 0.00 3.41
527 530 6.149973 TGTTGCTGAAATCAAGTCTCTTATGG 59.850 38.462 0.00 0.00 0.00 2.74
528 531 7.137490 TGTTGCTGAAATCAAGTCTCTTATG 57.863 36.000 0.00 0.00 0.00 1.90
529 532 7.663081 TCTTGTTGCTGAAATCAAGTCTCTTAT 59.337 33.333 9.19 0.00 38.53 1.73
530 533 6.992123 TCTTGTTGCTGAAATCAAGTCTCTTA 59.008 34.615 9.19 0.00 38.53 2.10
531 534 5.824624 TCTTGTTGCTGAAATCAAGTCTCTT 59.175 36.000 9.19 0.00 38.53 2.85
532 535 5.371526 TCTTGTTGCTGAAATCAAGTCTCT 58.628 37.500 9.19 0.00 38.53 3.10
533 536 5.679734 TCTTGTTGCTGAAATCAAGTCTC 57.320 39.130 9.19 0.00 38.53 3.36
534 537 5.048224 CCATCTTGTTGCTGAAATCAAGTCT 60.048 40.000 9.19 0.31 38.53 3.24
535 538 5.159209 CCATCTTGTTGCTGAAATCAAGTC 58.841 41.667 9.19 0.00 38.53 3.01
536 539 4.560108 GCCATCTTGTTGCTGAAATCAAGT 60.560 41.667 9.19 0.00 38.53 3.16
537 540 3.924686 GCCATCTTGTTGCTGAAATCAAG 59.075 43.478 0.00 0.00 38.69 3.02
538 541 3.306225 GGCCATCTTGTTGCTGAAATCAA 60.306 43.478 0.00 0.00 0.00 2.57
539 542 2.231964 GGCCATCTTGTTGCTGAAATCA 59.768 45.455 0.00 0.00 0.00 2.57
540 543 2.231964 TGGCCATCTTGTTGCTGAAATC 59.768 45.455 0.00 0.00 0.00 2.17
541 544 2.250031 TGGCCATCTTGTTGCTGAAAT 58.750 42.857 0.00 0.00 0.00 2.17
542 545 1.702182 TGGCCATCTTGTTGCTGAAA 58.298 45.000 0.00 0.00 0.00 2.69
543 546 1.927487 ATGGCCATCTTGTTGCTGAA 58.073 45.000 14.09 0.00 0.00 3.02
544 547 2.239402 TCTATGGCCATCTTGTTGCTGA 59.761 45.455 24.80 0.00 0.00 4.26
545 548 2.357009 GTCTATGGCCATCTTGTTGCTG 59.643 50.000 24.80 2.68 0.00 4.41
546 549 2.648059 GTCTATGGCCATCTTGTTGCT 58.352 47.619 24.80 0.00 0.00 3.91
547 550 1.331756 CGTCTATGGCCATCTTGTTGC 59.668 52.381 24.80 5.93 0.00 4.17
548 551 1.942657 CCGTCTATGGCCATCTTGTTG 59.057 52.381 24.80 8.53 0.00 3.33
549 552 1.837439 TCCGTCTATGGCCATCTTGTT 59.163 47.619 24.80 0.00 0.00 2.83
550 553 1.496060 TCCGTCTATGGCCATCTTGT 58.504 50.000 24.80 0.00 0.00 3.16
551 554 2.301296 AGATCCGTCTATGGCCATCTTG 59.699 50.000 24.80 14.01 31.36 3.02
552 555 2.301296 CAGATCCGTCTATGGCCATCTT 59.699 50.000 24.80 0.75 32.09 2.40
553 556 1.898472 CAGATCCGTCTATGGCCATCT 59.102 52.381 24.80 8.68 32.09 2.90
554 557 1.066573 CCAGATCCGTCTATGGCCATC 60.067 57.143 24.80 7.24 32.09 3.51
555 558 0.979665 CCAGATCCGTCTATGGCCAT 59.020 55.000 24.45 24.45 32.09 4.40
556 559 0.105709 TCCAGATCCGTCTATGGCCA 60.106 55.000 8.56 8.56 32.09 5.36
557 560 0.318762 GTCCAGATCCGTCTATGGCC 59.681 60.000 0.00 0.00 32.09 5.36
558 561 1.040646 TGTCCAGATCCGTCTATGGC 58.959 55.000 0.00 0.00 32.09 4.40
559 562 3.819564 TTTGTCCAGATCCGTCTATGG 57.180 47.619 0.00 0.00 32.09 2.74
747 751 0.667792 GTGCGTCCCAGAGAGACAAC 60.668 60.000 0.00 0.00 33.70 3.32
809 814 6.533819 TTAGGCGTACAATTTATTCGGATG 57.466 37.500 0.00 0.00 0.00 3.51
969 978 4.558538 TTGCTGACAAGAGAAAAGAAGC 57.441 40.909 0.00 0.00 0.00 3.86
1173 1188 2.040464 ATGATGGGGAGCGAGGGT 60.040 61.111 0.00 0.00 0.00 4.34
1219 1237 1.002069 TGATCATTGGAGGCCCTGTT 58.998 50.000 0.00 0.00 0.00 3.16
1224 1242 5.009410 CAGTATCTTTTGATCATTGGAGGCC 59.991 44.000 0.00 0.00 40.19 5.19
1276 1294 2.083628 AGGTCGACCCCTGTAATAGG 57.916 55.000 30.82 0.00 46.88 2.57
1543 1590 2.401766 GGATGCGTCTTGGCTGGTG 61.402 63.158 5.77 0.00 0.00 4.17
1884 1958 1.382522 TGATCCTCAAATCAAGCGGC 58.617 50.000 0.00 0.00 32.80 6.53
1996 2074 3.684788 TCTTCGCTTTCCAGATTTGCTAC 59.315 43.478 0.00 0.00 0.00 3.58
2000 2078 2.485426 TGCTCTTCGCTTTCCAGATTTG 59.515 45.455 0.00 0.00 40.11 2.32
2281 2379 7.468768 AAGCATGCAATGATGATAGAAGAAGTG 60.469 37.037 21.98 0.00 45.83 3.16
2288 2386 7.590279 CATAACAAGCATGCAATGATGATAGA 58.410 34.615 24.84 3.78 45.83 1.98
2302 2400 4.212847 CGCTCAAGATAGCATAACAAGCAT 59.787 41.667 0.00 0.00 42.91 3.79
2361 2463 3.482156 ACAGCAGTTCCATAGCATAGG 57.518 47.619 0.00 0.00 0.00 2.57
2525 2713 2.679837 AGCAATAGGATCAAAGTGTGCG 59.320 45.455 0.00 0.00 35.92 5.34
2547 2735 3.498774 AATCTCCACACAAAGAGCAGT 57.501 42.857 0.00 0.00 0.00 4.40
2548 2736 4.843220 AAAATCTCCACACAAAGAGCAG 57.157 40.909 0.00 0.00 0.00 4.24
2608 2813 3.874392 ATGGCCAAAACTATGCTGAAC 57.126 42.857 10.96 0.00 0.00 3.18
2612 2817 3.577848 TCAACAATGGCCAAAACTATGCT 59.422 39.130 10.96 0.00 0.00 3.79
2638 2843 0.908198 ACCAAACAGCCTTGCCAAAA 59.092 45.000 0.00 0.00 0.00 2.44
2656 2871 5.413833 CCCAGCATCACTTCCAATATATCAC 59.586 44.000 0.00 0.00 0.00 3.06
2663 2878 0.706433 ACCCCAGCATCACTTCCAAT 59.294 50.000 0.00 0.00 0.00 3.16
2718 2933 6.421377 TCCAACATGTTGATCAAGATAACG 57.579 37.500 34.76 16.21 42.93 3.18
2719 2934 7.253422 CCTTCCAACATGTTGATCAAGATAAC 58.747 38.462 34.76 2.70 42.93 1.89
2721 2936 5.357878 GCCTTCCAACATGTTGATCAAGATA 59.642 40.000 34.76 14.72 42.93 1.98
2733 2948 1.331214 AACACCAGCCTTCCAACATG 58.669 50.000 0.00 0.00 0.00 3.21
2763 2978 5.239306 TCACATCAACAGCCTTACAGAAAAG 59.761 40.000 0.00 0.00 0.00 2.27
2779 2999 3.044235 ACGCAAGAGACATCACATCAA 57.956 42.857 0.00 0.00 43.62 2.57
2804 3024 9.466741 CAAATACGGTTAAACACAAACAAAAAG 57.533 29.630 0.00 0.00 0.00 2.27
2854 3074 1.375908 CAGCTTTGAGCACGGCCTA 60.376 57.895 0.00 0.00 45.56 3.93
2859 3079 1.208614 GGCTTCAGCTTTGAGCACG 59.791 57.895 13.06 0.00 45.56 5.34
2875 3095 4.356289 AGTAAAACACAATGAACAACGGC 58.644 39.130 0.00 0.00 0.00 5.68
2920 3173 2.940514 TTACCTGGTCCATGAGAGGA 57.059 50.000 0.63 0.00 34.64 3.71
2921 3174 3.200825 ACATTTACCTGGTCCATGAGAGG 59.799 47.826 19.81 0.00 0.00 3.69
2922 3175 4.194640 CACATTTACCTGGTCCATGAGAG 58.805 47.826 19.81 9.11 0.00 3.20
2923 3176 3.622206 GCACATTTACCTGGTCCATGAGA 60.622 47.826 19.81 0.00 0.00 3.27
2924 3177 2.684881 GCACATTTACCTGGTCCATGAG 59.315 50.000 19.81 14.67 0.00 2.90
2925 3178 2.308570 AGCACATTTACCTGGTCCATGA 59.691 45.455 19.81 0.00 0.00 3.07
2926 3179 2.726821 AGCACATTTACCTGGTCCATG 58.273 47.619 0.63 9.55 0.00 3.66
2927 3180 4.584638 TTAGCACATTTACCTGGTCCAT 57.415 40.909 0.63 0.00 0.00 3.41
2928 3181 4.584638 ATTAGCACATTTACCTGGTCCA 57.415 40.909 0.63 0.00 0.00 4.02
2929 3182 5.193679 AGAATTAGCACATTTACCTGGTCC 58.806 41.667 0.63 0.00 0.00 4.46
2930 3183 5.880332 TGAGAATTAGCACATTTACCTGGTC 59.120 40.000 0.63 0.00 0.00 4.02
2931 3184 5.815581 TGAGAATTAGCACATTTACCTGGT 58.184 37.500 4.05 4.05 0.00 4.00
2932 3185 5.882557 ACTGAGAATTAGCACATTTACCTGG 59.117 40.000 0.00 0.00 0.00 4.45
2933 3186 6.992063 ACTGAGAATTAGCACATTTACCTG 57.008 37.500 0.00 0.00 0.00 4.00
2934 3187 7.620880 TGTACTGAGAATTAGCACATTTACCT 58.379 34.615 0.00 0.00 0.00 3.08
2935 3188 7.466050 GCTGTACTGAGAATTAGCACATTTACC 60.466 40.741 3.61 0.00 0.00 2.85
2936 3189 7.278868 AGCTGTACTGAGAATTAGCACATTTAC 59.721 37.037 3.61 0.00 33.81 2.01
2937 3190 7.331026 AGCTGTACTGAGAATTAGCACATTTA 58.669 34.615 3.61 0.00 33.81 1.40
2938 3191 6.176183 AGCTGTACTGAGAATTAGCACATTT 58.824 36.000 3.61 0.00 33.81 2.32
2939 3192 5.738909 AGCTGTACTGAGAATTAGCACATT 58.261 37.500 3.61 0.00 33.81 2.71
2940 3193 5.350504 AGCTGTACTGAGAATTAGCACAT 57.649 39.130 3.61 0.00 33.81 3.21
2941 3194 4.808414 AGCTGTACTGAGAATTAGCACA 57.192 40.909 3.61 0.00 33.81 4.57
2942 3195 5.672321 GCAAAGCTGTACTGAGAATTAGCAC 60.672 44.000 3.61 0.00 33.81 4.40
2943 3196 4.393062 GCAAAGCTGTACTGAGAATTAGCA 59.607 41.667 3.61 0.00 33.81 3.49
2957 3210 1.228644 TGCATCCAGGCAAAGCTGT 60.229 52.632 0.00 0.00 41.65 4.40
2960 3213 0.822164 AATCTGCATCCAGGCAAAGC 59.178 50.000 0.00 0.00 44.40 3.51
2974 3227 6.707608 TCACCATGTAAGCTAGCATAAATCTG 59.292 38.462 18.83 7.59 0.00 2.90
3029 3282 6.976934 ATCGGCCAAATTATAACCATTTCT 57.023 33.333 2.24 0.00 0.00 2.52
3035 3288 9.758651 AGAAAATAAATCGGCCAAATTATAACC 57.241 29.630 2.24 0.00 0.00 2.85
3066 3319 3.474600 CCCATCTGATCTGACATGAACC 58.525 50.000 4.21 0.00 0.00 3.62
3090 3343 2.488545 ACGACGATCTGCTAGTTGTTCT 59.511 45.455 0.00 0.00 0.00 3.01
3091 3344 2.864968 ACGACGATCTGCTAGTTGTTC 58.135 47.619 0.00 0.00 0.00 3.18
3092 3345 4.164294 GTTACGACGATCTGCTAGTTGTT 58.836 43.478 0.00 0.00 34.62 2.83
3093 3346 3.756069 GTTACGACGATCTGCTAGTTGT 58.244 45.455 0.00 0.00 36.55 3.32
3094 3347 6.991113 AGCGTTACGACGATCTGCTAGTTG 62.991 50.000 9.62 0.00 46.17 3.16
3095 3348 5.022100 AGCGTTACGACGATCTGCTAGTT 62.022 47.826 9.62 0.00 46.17 2.24
3096 3349 3.568501 AGCGTTACGACGATCTGCTAGT 61.569 50.000 9.62 0.00 46.17 2.57
3097 3350 1.003759 AGCGTTACGACGATCTGCTAG 60.004 52.381 9.62 0.00 46.17 3.42
3098 3351 1.012086 AGCGTTACGACGATCTGCTA 58.988 50.000 9.62 0.00 46.17 3.49
3099 3352 1.801332 AGCGTTACGACGATCTGCT 59.199 52.632 9.62 2.56 46.17 4.24
3100 3353 4.379221 AGCGTTACGACGATCTGC 57.621 55.556 9.62 0.00 46.17 4.26
3107 3360 1.205820 GGCAACCAAGCGTTACGAC 59.794 57.895 9.62 0.00 31.77 4.34
3108 3361 0.604243 ATGGCAACCAAGCGTTACGA 60.604 50.000 9.62 0.00 36.95 3.43
3109 3362 1.080298 TATGGCAACCAAGCGTTACG 58.920 50.000 0.00 0.00 36.95 3.18
3110 3363 3.775661 ATTATGGCAACCAAGCGTTAC 57.224 42.857 0.00 0.00 36.95 2.50
3111 3364 4.944930 AGTTATTATGGCAACCAAGCGTTA 59.055 37.500 0.00 0.00 36.95 3.18
3112 3365 3.761752 AGTTATTATGGCAACCAAGCGTT 59.238 39.130 0.00 0.00 36.95 4.84
3113 3366 3.128589 CAGTTATTATGGCAACCAAGCGT 59.871 43.478 0.00 0.00 36.95 5.07
3114 3367 3.694734 CAGTTATTATGGCAACCAAGCG 58.305 45.455 0.00 0.00 36.95 4.68
3115 3368 3.447742 GCAGTTATTATGGCAACCAAGC 58.552 45.455 0.00 0.00 36.95 4.01
3116 3369 3.181476 GGGCAGTTATTATGGCAACCAAG 60.181 47.826 0.00 0.00 44.55 3.61
3117 3370 2.763448 GGGCAGTTATTATGGCAACCAA 59.237 45.455 0.00 0.00 44.55 3.67
3118 3371 2.291865 TGGGCAGTTATTATGGCAACCA 60.292 45.455 0.00 0.00 44.55 3.67
3119 3372 2.383855 TGGGCAGTTATTATGGCAACC 58.616 47.619 0.00 0.00 44.55 3.77
3120 3373 5.982890 ATATGGGCAGTTATTATGGCAAC 57.017 39.130 0.00 0.00 44.55 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.